Citrus Sinensis ID: 010548

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccccccHHHHHHHHHccccccccccccccEEcccccccccEEEEEEEcccccccccHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHcHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHcccccccccEEEEcccccccccccccccEEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEEEEEcccHHHHccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEccccccHHHHHHHHHHcHccccccccccccEcccccccccccEEEEEcccccccHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHcccccccccccccEEccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccEEEcccccEEHHHHHHHHHHHHHccHHHHHHHHHHHccccccccEEEEccccHHHccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccccEEEEEEEEcccccEEEEEEEEcccccHHHHHccHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
mpggsgsssrtgVRVVVVGDRGTGKSSLIAAAatesvpekvppvhaptrlppdfypdrvpvtiidtssslenkGKLNEELKRADAVVLTYACNqqstlsrlssywlpelrrleIKVPIIVAGCkldlrgdhnatsleevmgPIMQQFREIETCVEcsattmiqvpDVFYYAQKavlhptaplfdhdeqtlKPRCVRALKRIFIICDhdmdgalndAELNEFQVKcfnaplqpaeiVGVKRVVQEkqhdgvndlgltLSGFLFLHALFIEKGRLETTWAVLRKfgygddlelrddflpvptklspdqsVELASEAVEFLRGIFglydidndgavrpaELEDlfltapespwdeapykdaaettaLGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFrcllfgpqnagkSALLNSflerpfsenyapttgeqYAVNvvdqpggnkktlILQEIPEEGVKKILSNkealascdvtifvydr
Flexible Loop (DISEMBL)
mpggsgsssrtgvRVVVVGDRGTGKSSLIAaaatesvpekvppvhaptrlppdfypdRVPVTIIdtssslenkgKLNEELKRADAVVLTYAcnqqstlsrlssywlpELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTaplfdhdeqTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTrkrsvdrkkqqternvfrcllfgpqNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIlsnkealascdvtifvydr
Low Complexity Region (SEG)
MPggsgsssrtgvrvvvvgdrgtgKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR
Disordered region (IsUnstruct)
*************RVVVVG**********************************FYPDRVPVTII***************LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL****SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVT*************RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY**
Disordered Region (DISOPRED)
**************VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP***************CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRV****************VFRCLLFGPQNAGKSALLNSFL***************YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR
Disordered Region (DISEMBL)
***********GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALR*************TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR
Disordered Region (DISPRO)
*********RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDR*KQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
P0CO78	686	Mitochondrial Rho GTPase	yes	no	0.978	0.723	0.421	1e-116
P0CO79	686	Mitochondrial Rho GTPase	N/A	no	0.978	0.723	0.421	1e-116
Q4PB75	752	Mitochondrial Rho GTPase	N/A	no	0.978	0.659	0.398	1e-114
Q2HJF8	631	Mitochondrial Rho GTPase	yes	no	0.976	0.784	0.426	1e-111
Q5ZM83	618	Mitochondrial Rho GTPase	yes	no	0.954	0.783	0.435	1e-110
Q8IXI2	618	Mitochondrial Rho GTPase	no	no	0.958	0.786	0.426	1e-109
Q8BG51	631	Mitochondrial Rho GTPase	yes	no	0.966	0.776	0.422	1e-109
Q5ZM73	619	Mitochondrial Rho GTPase	no	no	0.960	0.786	0.424	1e-109
Q6NVC5	619	Mitochondrial Rho GTPase	yes	no	0.960	0.786	0.422	1e-108
Q8IMX7	652	Mitochondrial Rho GTPase	yes	no	0.974	0.757	0.394	1e-106

>sp|P0CO78|GEM1_CRYNJ Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GEM1 PE=3 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/543 (42%), Positives = 315/543 (58%), Gaps = 47/543 (8%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+VGD G GKSS+I +   E+    VP V     +PP+  P+    +I+DTSS+
Sbjct: 4   RDLVRIVLVGDDGVGKSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSN 63

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
             ++  L   + RA  + L Y+    S+  R++ YWLP  RR  I VP+I+ G K+DLRG
Sbjct: 64  PRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRG 123

Query: 130 DH-NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
                  LE+   PIM++F+E+ET VECSA   + V +VFY+AQKAVLHPTAPL+D  E 
Sbjct: 124 GRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREH 183

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHD 248
           TLKP+C+ ALKRIF I D D DG LN  ELN+FQ KCF+ PLQ  E+ G+  +V+     
Sbjct: 184 TLKPKCLEALKRIFTISDVDKDGLLNAHELNQFQQKCFSTPLQSQELDGILEIVRSYDPY 243

Query: 249 GVNDL---------------------------------GLTLSGFLFLHALFIEKGRLET 275
            V  L                                 G+T  GFL+LH +FI++GR+ET
Sbjct: 244 AVQPLPSSSPNTPLSRDSSYGQLHYFNNNVVPPSPPQEGITELGFLYLHTMFIQQGRMET 303

Query: 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRP 335
           TW VLRKFGYG+ L+LR+DFL     +  D SVEL+    +FL  IF  YD D DGA+  
Sbjct: 304 TWTVLRKFGYGESLDLREDFLAPKFDVPSDCSVELSPLGNQFLTDIFEAYDKDQDGALSQ 363

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVG 395
            EL+DLF T+P +PW    + D   T  +G +TL+G++++W++ TLL+ R +L  L Y+G
Sbjct: 364 NELDDLFSTSPGNPWLSQGFPDTTITDDMGRVTLQGWLAQWSMTTLLNHRTTLNYLAYLG 423

Query: 396 YGGDPA------AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS 449
           Y   PA       AL VTR R  DR++++  RNVF C + G   +GK++LL SF+ RPF 
Sbjct: 424 YSSSPATDLPTPTALHVTRPRKQDRRQRKVTRNVFLCYVLGATGSGKTSLLRSFVNRPFK 483

Query: 450 ------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
                   Y PTT     VN V+   G +K L+LQE   +   +IL N + L   D+ I+
Sbjct: 484 GGEDGLGGYEPTTKVLSVVNSVEME-GVEKYLVLQEFGSKYESEILRNSKRLDMADIIIY 542

Query: 504 VYD 506
           V+D
Sbjct: 543 VHD 545

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|P0CO79|GEM1_CRYNB Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GEM1 PE=3 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/543 (42%), Positives = 315/543 (58%), Gaps = 47/543 (8%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+VGD G GKSS+I +   E+    VP V     +PP+  P+    +I+DTSS+
Sbjct: 4   RDLVRIVLVGDDGVGKSSIITSLIKEAFVTNVPHVVPEVTIPPEITPENFTTSIVDTSSN 63

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
             ++  L   + RA  + L Y+    S+  R++ YWLP  RR  I VP+I+ G K+DLRG
Sbjct: 64  PRSRPHLLSSISRAHVICLVYSIADPSSFDRVAEYWLPLFRREGINVPVILVGNKIDLRG 123

Query: 130 DH-NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
                  LE+   PIM++F+E+ET VECSA   + V +VFY+AQKAVLHPTAPL+D  E 
Sbjct: 124 GRVTNQGLEDESAPIMREFKEVETVVECSALLPLNVSEVFYFAQKAVLHPTAPLYDSREH 183

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHD 248
           TLKP+C+ ALKRIF I D D DG LN  ELN+FQ KCF+ PLQ  E+ G+  +V+     
Sbjct: 184 TLKPKCLEALKRIFTISDVDKDGLLNAHELNQFQQKCFSTPLQSQELDGILEIVRSYDPY 243

Query: 249 GVNDL---------------------------------GLTLSGFLFLHALFIEKGRLET 275
            V  L                                 G+T  GFL+LH +FI++GR+ET
Sbjct: 244 AVQPLPSSSPNTPLSRDSSYGQLHYFNNNVVPPSPPQEGITELGFLYLHTMFIQQGRMET 303

Query: 276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRP 335
           TW VLRKFGYG+ L+LR+DFL     +  D SVEL+    +FL  IF  YD D DGA+  
Sbjct: 304 TWTVLRKFGYGESLDLREDFLAPKFDVPSDCSVELSPLGNQFLTDIFEAYDKDQDGALSQ 363

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVG 395
            EL+DLF T+P +PW    + D   T  +G +TL+G++++W++ TLL+ R +L  L Y+G
Sbjct: 364 NELDDLFSTSPGNPWLSQGFPDTTITDDMGRVTLQGWLAQWSMTTLLNHRTTLNYLAYLG 423

Query: 396 YGGDPA------AALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFS 449
           Y   PA       AL VTR R  DR++++  RNVF C + G   +GK++LL SF+ RPF 
Sbjct: 424 YSSSPATDLPTPTALHVTRPRKQDRRQRKVTRNVFLCYVLGATGSGKTSLLRSFVNRPFK 483

Query: 450 ------ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
                   Y PTT     VN V+   G +K L+LQE   +   +IL N + L   D+ I+
Sbjct: 484 GGEDGLGGYEPTTKVLSVVNSVEME-GVEKYLVLQEFGSKYESEILRNSKRLDMADIIIY 542

Query: 504 VYD 506
           V+D
Sbjct: 543 VHD 545

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q4PB75|GEM1_USTMA Mitochondrial Rho GTPase 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=GEM1 PE=3 SV=1

 Score =  414 bits (1063), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/565 (39%), Positives = 326/565 (57%), Gaps = 69/565 (12%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+V+ GD   GKS+LI +   E+   KV  V  P  LPP+  P+ V   I+DTSSS
Sbjct: 2   RKDVRIVLAGDPDVGKSTLITSLVKEAYVAKVQKVVPPITLPPEVAPEAVVTKIVDTSSS 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR- 128
            E++  L  EL+RA+ + + Y+ +  S+  R+ +YWLP +R L + VP+I+ G K+DLR 
Sbjct: 62  PEHRANLEAELRRANVICIVYSISAPSSFDRIPTYWLPYIRSLGVNVPVILVGNKIDLRS 121

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQ 188
           GD    +LE+ + P+M +F+E+ETCVECSA   + V +VFY+AQKAVL+PTAPL+D  E 
Sbjct: 122 GDVTNAALEDELAPVMAEFKEVETCVECSARIPLNVSEVFYFAQKAVLYPTAPLYDSREH 181

Query: 189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQE---- 244
            LKP CV ALKRIF +CD D DG L+D ELN+FQ KCF+ PLQ  E+ G+K +V +    
Sbjct: 182 VLKPACVDALKRIFRLCDSDKDGLLSDGELNDFQRKCFDTPLQAQELEGIKDLVVQAPIA 241

Query: 245 -----------------------KQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLR 281
                                    H  + +  LT++GFL+LH LFI++GRLETTW VLR
Sbjct: 242 GLRYNHENSSVAASGSSANGDIPSHHPHLREGSLTMAGFLYLHTLFIQRGRLETTWTVLR 301

Query: 282 KFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
            FGYG DL L+D F+     + P+ SVEL+    +FL  IF ++D D DGA+   EL+ L
Sbjct: 302 TFGYGVDLSLQDSFVKPAFAVPPECSVELSPNGYQFLTDIFEVHDKDRDGALSEEELDSL 361

Query: 342 FLTAPES--PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY--- 396
           F+TAP++  PW    +  +  T   G +TL+G++++W++ TLLD R +LA L Y+GY   
Sbjct: 362 FITAPDNRHPWQGTGFPTSTITDEHGAVTLQGWLAQWSMTTLLDHRTTLAYLAYLGYPSF 421

Query: 397 -----------------------GGDPA-----------AALRVTRKRSVDRKKQ-QTER 421
                                  G  P+            AL++TR R  D+KK+   +R
Sbjct: 422 PLSGSSGSASTPAPIPLTPTGPPGSRPSRNRTPCPPSTITALKLTRPRKTDKKKKGAIQR 481

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           +VF   + G   +GK+A+L + + + F+  Y PT      V+ V+Q  G ++ L+LQE  
Sbjct: 482 SVFLGFVLGAAGSGKTAILRNMVGKRFANAYEPTQKMMSVVSTVEQ-AGAERYLVLQEFG 540

Query: 482 EEGVKKILSNKEALASCDVTIFVYD 506
                ++L N   L++ DV +FVYD
Sbjct: 541 SRYEAEVLRNTAKLSAADVIVFVYD 565

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q2HJF8|MIRO1_BOVIN Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 PE=2 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/521 (42%), Positives = 313/521 (60%), Gaps = 26/521 (4%)

Query: 1   MPGGSGSSSRTG-----VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY 55
           MP G G   R       VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  
Sbjct: 1   MPAGRGRPLRAADMKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVT 60

Query: 56  PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRL 112
           P+RVP  I+D S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    
Sbjct: 61  PERVPTHIVDYSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDK 120

Query: 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ 172
           + ++P+I+ G K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQ
Sbjct: 121 DSRLPLILVGNKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQ 176

Query: 173 KAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQP 232
           KAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P
Sbjct: 177 KAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAP 236

Query: 233 AEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELR 292
             +  VK VV++   DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L 
Sbjct: 237 QALEDVKNVVRKHISDGVADGGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLT 296

Query: 293 DDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE 352
            ++L    K+ PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW  
Sbjct: 297 PEYLFPLLKIPPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWG- 355

Query: 353 APYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVT 407
               +   T   G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VT
Sbjct: 356 PDVNNTVCTNEKGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVT 415

Query: 408 RKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVV 465
           R + +D +K+QT+RNVFRC + G +N GKS +L + L R  +         +  YA+N V
Sbjct: 416 RDKKIDLQKKQTQRNVFRCNVIGMKNCGKSGVLQALLGRNLTRQKKIRDDHKSYYAINTV 475

Query: 466 DQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506
               G +K L+L +I E    + L+  E L  CDV   VYD
Sbjct: 476 -YVYGQEKYLLLHDISES---EFLTEAEIL--CDVVCLVYD 510

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5ZM83|MIRO2_CHICK Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1

 Score =  400 bits (1027), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/503 (43%), Positives = 302/503 (60%), Gaps = 19/503 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           VR++++G+   GK+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + 
Sbjct: 5   VRILLLGEAQVGKTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQT 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRG 129
           + +L EE+ +A+ V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+ 
Sbjct: 65  EDELQEEIAKANVVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ- 123

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
                S  EV+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ 
Sbjct: 124 ---MGSSMEVILPIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQ 180

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDG 249
           L+P C RAL RIF + D D +  L+D ELN FQ  CF  PL P  +  VK VV +   DG
Sbjct: 181 LRPACSRALTRIFNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDG 240

Query: 250 VNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVE 309
           V D GLTL+GFLFL+ LFI++GR ETTW +LR+FGY D+LEL DD+L    +L P  S E
Sbjct: 241 VQDNGLTLNGFLFLNTLFIQRGRHETTWTILRRFGYDDELELTDDYLYPQFRLPPGCSTE 300

Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
           L     +FL+ +F  +D D DGA+ PAEL++ F   P  PW    Y     TT  G L+L
Sbjct: 301 LNHLGYQFLQRLFEKHDKDQDGALSPAELQNFFSVFPCMPWGPELYNTVC-TTDKGLLSL 359

Query: 370 KGFVSKWALMTLLDPRHSLANLIYVGY-----GGDPAAALRVTRKRSVDRKKQQTERNVF 424
            GF+ +W L+  LD RH L  L Y+GY           AL VTR++ +D +K QT+RNVF
Sbjct: 360 HGFLCQWTLIAYLDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVF 419

Query: 425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
            C + G + AGKSA L +FL R   ++  +P     Y +N V Q  G +K LIL E+  E
Sbjct: 420 LCKVLGARGAGKSAFLQAFLGRSLAAQRESPGEPSPYTINTV-QVNGQEKYLILHEVSAE 478

Query: 484 GVKKILSNKEALASCDVTIFVYD 506
                   K + A+CDV   +YD
Sbjct: 479 ----TQFTKPSDAACDVACLIYD 497

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8IXI2|MIRO1_HUMAN Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2

 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/507 (42%), Positives = 308/507 (60%), Gaps = 21/507 (4%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S +
Sbjct: 2   KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G K D
Sbjct: 62  EQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +
Sbjct: 122 LV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHI 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD 
Sbjct: 238 SDGVADSGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T   G 
Sbjct: 298 TTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFKVFPYIPWG-PDVNNTVCTNERGW 356

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+R
Sbjct: 357 ITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAVTVTRDKKIDLQKKQTQR 416

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           NVFRC + G +N GKS +L + L R     +         YA+N V    G +K L+L +
Sbjct: 417 NVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSYYAINTV-YVYGQEKYLLLHD 475

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYD 506
           I E    + L+  E +  CDV   VYD
Sbjct: 476 ISE---SEFLTEAEII--CDVVCLVYD 497

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8BG51|MIRO1_MOUSE Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot1 PE=2 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 308/511 (60%), Gaps = 21/511 (4%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIID 65
            S  +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D
Sbjct: 11  ASDMKKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVD 70

Query: 66  TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAG 122
            S + ++  +L++E+ +A+ + + YA N + ++ +++S W+P   E    + ++P+I+ G
Sbjct: 71  YSEAEQSDEQLHQEISQANVICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVG 130

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
            K DL      +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL
Sbjct: 131 NKSDLV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPL 186

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           +  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV
Sbjct: 187 YCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVV 246

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           ++   DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+
Sbjct: 247 RKHLSDGVADSGLTLRGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKI 306

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
            PD + EL   A  FL+  F  +D+D D A+ P EL+DLF   P  PW      +   T 
Sbjct: 307 PPDCTTELNHHAYLFLQSTFDKHDLDRDCALSPDELKDLFQVFPYIPWG-PDVNNTVCTN 365

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQ 417
             G +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+
Sbjct: 366 ERGWITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKK 425

Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTL 475
           QT+RNVFRC + G +  GK+ +L S L R            +  YA+N V    G +K L
Sbjct: 426 QTQRNVFRCNVIGVKGCGKTGVLQSLLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYL 484

Query: 476 ILQEIPEEGVKKILSNKEALASCDVTIFVYD 506
           +L +I E    + L+  E +  CDV   VYD
Sbjct: 485 LLHDISE---SEFLTEAETI--CDVVCLVYD 510

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5ZM73|MIRO1_CHICK Mitochondrial Rho GTPase 1 OS=Gallus gallus GN=RHOT1 PE=2 SV=1

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/507 (42%), Positives = 305/507 (60%), Gaps = 20/507 (3%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           +  VR+++VG+   GK+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S +
Sbjct: 2   KKDVRILLVGEPRVGKTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            +N  +L  E+ +A+ + + YA N ++++ +++S W+P   E    + ++P+I+ G K D
Sbjct: 62  EQNDEQLYHEISQANVICIVYAVNNKNSIDKVTSRWIPLINERTDKDSRLPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L      +S+E ++ PIM Q+ EIETCVECSA  +    ++FYYAQKAVLHPT PL+  +
Sbjct: 122 LV---EYSSMETIL-PIMNQYTEIETCVECSAKNLKNRSELFYYAQKAVLHPTGPLYCPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPACIKALTRIFRISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKNV 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD 
Sbjct: 238 SDGVADNGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTPEYLFPLLKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+ IF  +D+D D A+ P EL+DLF   P  PW              G 
Sbjct: 298 TTELNHHAYLFLQSIFDKHDLDRDCALSPDELKDLFKVFPYMPWGPDVNNTVCTNGKGGW 357

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +GF+S+W L T LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+R
Sbjct: 358 ITYQGFLSQWTLTTYLDVQRCLEYLGYLGYSILAEQESQASAITVTRDKKIDLQKKQTQR 417

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQE 479
           NVFRC + G +  GKS +L + L R            +  YA+N V    G +K L+L +
Sbjct: 418 NVFRCNVVGMKGCGKSGVLQALLGRNLMRQRQIRAEHKSYYAINTV-YVYGQEKYLLLHD 476

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYD 506
           + +    + L++ E +  CDV   VYD
Sbjct: 477 VSDS---EFLTDAETI--CDVVCLVYD 498

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6NVC5|MIRO1_DANRE Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rhot1a PE=2 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/507 (42%), Positives = 307/507 (60%), Gaps = 20/507 (3%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+++VG+   GK+SLI +  +E  P++VPP      +P D  P+RVP  I+D S +
Sbjct: 2   RKDVRILLVGEPKVGKTSLIMSLVSEEFPDEVPPRAEEITIPADVTPERVPTHIVDYSEA 61

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLD 126
            ++  +L +E+ +A+ + + Y+ N + ++ +++S+W+P   E    + +VP+I+ G K D
Sbjct: 62  EQSDEQLYQEITKANVICIVYSVNNKKSIEKVTSHWIPLINERTDKDSRVPLILVGNKSD 121

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           L  +H  +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +
Sbjct: 122 L-VEH--SSMETIL-PIMNQYSEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYSPE 177

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
           E+ +KP C++AL RIF I D D DG LND ELN FQ  CFN PL P  +  VK VV++  
Sbjct: 178 EKEMKPSCIKALTRIFKISDLDNDGILNDNELNFFQRTCFNIPLAPQALEDVKNVVRKNM 237

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            DGV D GLTL GFLFLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD 
Sbjct: 238 TDGVKDNGLTLKGFLFLHTLFIQRGRHETTWTVLRRFGYDDDLELTQEYLFPLFKIPPDC 297

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           + EL   A  FL+ +F  +D D D A+ P EL+DLF   P  PW      +   T   G 
Sbjct: 298 TTELNHNAYLFLQSVFDKHDKDRDCALSPDELKDLFKVFPYMPWG-PDVNNTVCTNEQGW 356

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTER 421
           +T +G++S+W L T LD +  L  L Y+GY         AAA+ VTR + +D +K+QT+R
Sbjct: 357 ITYQGYLSQWTLTTYLDVQRCLEYLGYLGYSIIQEQESQAAAITVTRNKRIDLQKKQTQR 416

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           +VFRC + G +  GKS  L +FL R     +         YA++     G  K  L+ + 
Sbjct: 417 SVFRCNVLGARGCGKSGFLQAFLGRNLVRQKRIREDHKSYYAISTTYVYGQEKYLLLHEV 476

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYD 506
           +P+    + LS  EA  +CDV   VYD
Sbjct: 477 LPD---VEFLS--EADLACDVVCLVYD 498

Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8IMX7|MIRO_DROME Mitochondrial Rho GTPase OS=Drosophila melanogaster GN=Miro PE=1 SV=1

 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/537 (39%), Positives = 313/537 (58%), Gaps = 43/537 (8%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G   +S R  VR+++VGD G GK+SLI +  +E  PE+VPP      +P +  P++VP +
Sbjct: 2   GQYTASQRKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIPANVTPEQVPTS 61

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR------------ 110
           I+D S+  +++  L  E+ +A  V + YA +   TL R++S+WLP +R            
Sbjct: 62  IVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGEGD 121

Query: 111 ----------RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT 160
                     R  I+ PI++ G K+DL      ++++ V+  IM+ + EIE+CVECSA +
Sbjct: 122 AEAEAEGDTQREPIRKPIVLVGNKIDLI---EYSTMDSVLA-IMEDYPEIESCVECSAKS 177

Query: 161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNE 220
           +  + ++FYYAQKAVLHPT+PL+  +EQ L   C ++L RIF ICD D D  LND ELN 
Sbjct: 178 LHNISEMFYYAQKAVLHPTSPLYMMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNL 237

Query: 221 FQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVL 280
           FQ +CFN PLQP  +  VK V+Q+   DG+ +  +TL GFLFLH LFI++GR ETTWAVL
Sbjct: 238 FQRRCFNTPLQPQILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVL 297

Query: 281 RKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED 340
           R+FGY D LE+  ++L  P K+ P  S EL+    +FL  +F  YD D DGA+ P E + 
Sbjct: 298 RRFGYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGALSPEEHKM 357

Query: 341 LFLTAPESPWDEAP--YKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGY-- 396
           LF T P +PW  +    K        G +TL G++ +W LMTL+D   ++  L Y+G+  
Sbjct: 358 LFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTLIDVVKTMEYLAYLGFNV 417

Query: 397 --GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP 454
                  AA+ VTR+R +D  K+Q+ R+V++C + GP+ +GK+ +   FL     E+   
Sbjct: 418 HENDSQLAAIHVTRERRIDLAKRQSSRSVYKCHVIGPKGSGKTGMCRGFL----VEDMHK 473

Query: 455 TTGEQYAVNVVD-----QPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506
             G+++  NVV+     Q  G +K LIL++I        L  +E   +CDV   VYD
Sbjct: 474 LIGKEFKTNVVNCINSVQVYGQEKHLILRDIDVRHALDPLQPQE--VNCDVACLVYD 528

Mitochondrial GTPase involved in mitochondrial trafficking. Milt and Miro form an essential protein complex that links Khc to mitochondria for light chain-independent, anterograde transport of mitochondria. Required for axonal transport to synapses within nerve terminals. Required presynaptically but not postsynaptically at neuromuscular junctions (NMJs).

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
224082628	645	predicted protein [Populus trichocarpa]	0.998	0.784	0.759	0.0
225450975	647	PREDICTED: mitochondrial Rho GTPase 1 [V	0.994	0.778	0.728	0.0
296088320	684	unnamed protein product [Vitis vinifera]	0.994	0.736	0.728	0.0
255559464	644	rac-GTP binding protein, putative [Ricin	0.998	0.785	0.743	0.0
225436934	639	PREDICTED: mitochondrial Rho GTPase 1 [V	0.952	0.755	0.733	0.0
150036254	647	ATP/GTP/Ca++ binding protein [Cucumis me	0.986	0.772	0.712	0.0
449462328	639	PREDICTED: LOW QUALITY PROTEIN: mitochon	0.976	0.774	0.708	0.0
449442827	647	PREDICTED: mitochondrial Rho GTPase 1-li	0.986	0.772	0.71	0.0
449482860	648	PREDICTED: mitochondrial Rho GTPase 1-li	0.986	0.771	0.708	0.0
224125274	651	predicted protein [Populus trichocarpa]	0.978	0.761	0.697	0.0

>gi|224082628|ref|XP_002306771.1| predicted protein [Populus trichocarpa] gi|222856220|gb|EEE93767.1| predicted protein [Populus trichocarpa]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/508 (75%), Positives = 452/508 (88%), Gaps = 2/508 (0%)

Query: 1   MPGGSGSSS--RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR 58
           MPGG+ +++  +TGVR+VVVGDRGTGKSSLIAAAATES PE + PV  PTRLP DF+PDR
Sbjct: 1   MPGGNSAAAGGKTGVRIVVVGDRGTGKSSLIAAAATESFPENLSPVLPPTRLPADFFPDR 60

Query: 59  VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI 118
           VP+TIIDTS+SLE++GKLNEELKRAD ++LTYAC+   TL+RLSS+WL E RRLE+KVP+
Sbjct: 61  VPITIIDTSASLESRGKLNEELKRADVIILTYACDFPLTLTRLSSFWLQEFRRLEVKVPV 120

Query: 119 IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
           IV GCK+DLR ++   SLE VMGPIMQQ+REIETC+ECSA T++QVPDVFYYAQKAVLHP
Sbjct: 121 IVVGCKVDLRDENQPISLEPVMGPIMQQYREIETCIECSAVTLMQVPDVFYYAQKAVLHP 180

Query: 179 TAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGV 238
           TAPLFD D Q L+PRC+RAL+RIFI+CD DMDGALNDAELN+FQVKCF+APLQPAEIVGV
Sbjct: 181 TAPLFDQDTQALQPRCIRALRRIFILCDSDMDGALNDAELNDFQVKCFDAPLQPAEIVGV 240

Query: 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPV 298
           +RVVQEK+ +GVNDLGLTL GFLFLH+LFI+KGRLETTWAVLRKFGYG+DL+LRDDFLP 
Sbjct: 241 RRVVQEKKKEGVNDLGLTLEGFLFLHSLFIDKGRLETTWAVLRKFGYGNDLKLRDDFLPA 300

Query: 299 PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDA 358
           P+K +PDQSVEL  EAVEF+R +F L+D DN GA+RP EL++LF TAPE+PW EAPYKDA
Sbjct: 301 PSKDAPDQSVELTIEAVEFVRRVFRLFDTDNYGALRPTELDELFSTAPENPWGEAPYKDA 360

Query: 359 AETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQ 418
           AE T  GNLTLKGF+S+WALMT+LDPR SLANL+Y+GYGG+PA+AL VTR+RSVDRKKQQ
Sbjct: 361 AERTTQGNLTLKGFLSEWALMTMLDPRGSLANLLYIGYGGNPASALHVTRRRSVDRKKQQ 420

Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           TERNVF CL+FGP+NAGKS LLNSFL RPFSE++    GE+YAVNVVDQ GGNKKTLIL+
Sbjct: 421 TERNVFHCLVFGPKNAGKSTLLNSFLGRPFSESHELIAGERYAVNVVDQHGGNKKTLILR 480

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYD 506
           EIPE+GVKK LSNKE+L+S DV +FV D
Sbjct: 481 EIPEDGVKKFLSNKESLSSSDVAVFVCD 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450975|ref|XP_002284757.1| PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera]

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/504 (72%), Positives = 438/504 (86%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G + S +RTGVR+VV GDRGTGKSSLI  AA E+ P  V PV  PTRLP DFYPDRVP+T
Sbjct: 7   GATNSGNRTGVRIVVAGDRGTGKSSLIVTAAAENFPANVAPVLPPTRLPDDFYPDRVPIT 66

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAG 122
           IIDTSSSLEN+  L +EL+RADAVVLTYAC+Q +TL RLS++WLPELRRLE+KVP+IV G
Sbjct: 67  IIDTSSSLENRSALADELRRADAVVLTYACDQPATLDRLSTFWLPELRRLEVKVPVIVVG 126

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
           CKLDLR ++   SLE+VM PIMQQFREIETC+ECSA+T IQ+P+VFYYAQKAVLHPT PL
Sbjct: 127 CKLDLRDENQQMSLEQVMSPIMQQFREIETCIECSASTHIQIPEVFYYAQKAVLHPTGPL 186

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           FD + QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EI GVKRVV
Sbjct: 187 FDQETQTLKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNAPLQPSEISGVKRVV 246

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           QEK H+GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++LR+D +P+  K 
Sbjct: 247 QEKLHEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLREDLIPLSFKR 306

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
           +PDQ++EL +EA+EFL+GIF L+DID DGA+ P EL DLF TAPESPW EAPYKDAAE T
Sbjct: 307 APDQNMELTTEALEFLKGIFSLFDIDGDGALHPDELVDLFSTAPESPWIEAPYKDAAEKT 366

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERN 422
           ALG L+L GF+S+WAL+TLLDP  SL NLIY+GY GDP +A+RVTRKR +DRKKQQ++RN
Sbjct: 367 ALGGLSLDGFLSEWALLTLLDPVSSLENLIYIGYAGDPPSAMRVTRKRRLDRKKQQSDRN 426

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           VF+C +FGP+ AGKS LLN+FL RPFS++Y PT  E+YAVNVVDQPGG+KKTL+L+EI E
Sbjct: 427 VFQCFVFGPKEAGKSGLLNAFLGRPFSDSYNPTIDERYAVNVVDQPGGSKKTLVLREIAE 486

Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
           +GV+K+LS +++LA+CD+ +FVYD
Sbjct: 487 DGVRKLLSKRDSLAACDIALFVYD 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088320|emb|CBI36765.3| unnamed protein product [Vitis vinifera]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/504 (72%), Positives = 438/504 (86%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT 62
           G + S +RTGVR+VV GDRGTGKSSLI  AA E+ P  V PV  PTRLP DFYPDRVP+T
Sbjct: 44  GATNSGNRTGVRIVVAGDRGTGKSSLIVTAAAENFPANVAPVLPPTRLPDDFYPDRVPIT 103

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAG 122
           IIDTSSSLEN+  L +EL+RADAVVLTYAC+Q +TL RLS++WLPELRRLE+KVP+IV G
Sbjct: 104 IIDTSSSLENRSALADELRRADAVVLTYACDQPATLDRLSTFWLPELRRLEVKVPVIVVG 163

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPL 182
           CKLDLR ++   SLE+VM PIMQQFREIETC+ECSA+T IQ+P+VFYYAQKAVLHPT PL
Sbjct: 164 CKLDLRDENQQMSLEQVMSPIMQQFREIETCIECSASTHIQIPEVFYYAQKAVLHPTGPL 223

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVV 242
           FD + QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EI GVKRVV
Sbjct: 224 FDQETQTLKPRCVRALKRIFILCDHDRDGALSDAELNDFQVKCFNAPLQPSEISGVKRVV 283

Query: 243 QEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKL 302
           QEK H+GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++LR+D +P+  K 
Sbjct: 284 QEKLHEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLREDLIPLSFKR 343

Query: 303 SPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETT 362
           +PDQ++EL +EA+EFL+GIF L+DID DGA+ P EL DLF TAPESPW EAPYKDAAE T
Sbjct: 344 APDQNMELTTEALEFLKGIFSLFDIDGDGALHPDELVDLFSTAPESPWIEAPYKDAAEKT 403

Query: 363 ALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERN 422
           ALG L+L GF+S+WAL+TLLDP  SL NLIY+GY GDP +A+RVTRKR +DRKKQQ++RN
Sbjct: 404 ALGGLSLDGFLSEWALLTLLDPVSSLENLIYIGYAGDPPSAMRVTRKRRLDRKKQQSDRN 463

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           VF+C +FGP+ AGKS LLN+FL RPFS++Y PT  E+YAVNVVDQPGG+KKTL+L+EI E
Sbjct: 464 VFQCFVFGPKEAGKSGLLNAFLGRPFSDSYNPTIDERYAVNVVDQPGGSKKTLVLREIAE 523

Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
           +GV+K+LS +++LA+CD+ +FVYD
Sbjct: 524 DGVRKLLSKRDSLAACDIALFVYD 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559464|ref|XP_002520752.1| rac-GTP binding protein, putative [Ricinus communis] gi|223540137|gb|EEF41714.1| rac-GTP binding protein, putative [Ricinus communis]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/507 (74%), Positives = 439/507 (86%), Gaps = 1/507 (0%)

Query: 1   MPGGSG-SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRV 59
           MPGG+  +  + GVRVVV GDR TGKSSLIAAAATE+ PE VP V  PTRLP DF+PDR+
Sbjct: 1   MPGGNSITGGKVGVRVVVAGDRFTGKSSLIAAAATETYPENVPRVLPPTRLPADFFPDRI 60

Query: 60  PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
           P+TIIDTS++LE++GKL EELKRAD VVLTY+C+Q  TLSRLSS+WL ELRRLE+KVP+I
Sbjct: 61  PITIIDTSAALESRGKLIEELKRADVVVLTYSCDQPLTLSRLSSFWLEELRRLEVKVPVI 120

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT 179
           V GCKLDLR +    SLE+VMGPIMQQ REIETC+ECSA T++QVPDVF+YAQKAVLHPT
Sbjct: 121 VVGCKLDLRDEAYPVSLEQVMGPIMQQHREIETCIECSAVTLMQVPDVFFYAQKAVLHPT 180

Query: 180 APLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVK 239
           APLFD +  TLKPRC RAL+RIF++CDHDMDGALND ELN FQVKCFNAPLQPAEIVGV+
Sbjct: 181 APLFDQEHHTLKPRCERALRRIFLLCDHDMDGALNDLELNNFQVKCFNAPLQPAEIVGVR 240

Query: 240 RVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVP 299
           RVVQEK+ DGVND+GLTL GFLFLH+LFI++GR+ETTW VLRKFGY D+L+LRDD LPVP
Sbjct: 241 RVVQEKKRDGVNDIGLTLEGFLFLHSLFIDRGRIETTWTVLRKFGYDDELKLRDDLLPVP 300

Query: 300 TKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAA 359
            K +PDQS+EL  E VEFLRGIF L+DIDN GA+RP+EL++LF TAPE+PW EAPYKDAA
Sbjct: 301 YKHAPDQSIELTIEVVEFLRGIFRLFDIDNHGALRPSELDELFSTAPENPWCEAPYKDAA 360

Query: 360 ETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQT 419
           E T   +LT KGF+S W LMTLL+P+ SLANLIYVGY G+PA+AL VTR+R+VDRKKQQT
Sbjct: 361 ERTMQRSLTFKGFLSGWDLMTLLNPKSSLANLIYVGYSGNPASALHVTRRRTVDRKKQQT 420

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           ERNVF CL+FGP+NAGKSALLNSFL RPFSE++    GE +A NVVDQ GG KKTLIL+E
Sbjct: 421 ERNVFHCLVFGPKNAGKSALLNSFLGRPFSESFHLPIGEHFAANVVDQLGGIKKTLILRE 480

Query: 480 IPEEGVKKILSNKEALASCDVTIFVYD 506
           +PE+GVKK LSNKE+LA+CDV +FVYD
Sbjct: 481 VPEDGVKKYLSNKESLAACDVAVFVYD 507

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436934|ref|XP_002275434.1| PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera] gi|296086704|emb|CBI32339.3| unnamed protein product [Vitis vinifera]

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/484 (73%), Positives = 414/484 (85%), Gaps = 1/484 (0%)

Query: 23  TGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR 82
           TGKSSLI+ AATE+ PE V PV  PTRLP DFYPDRVPVTIIDTSSSLE++ KL EELKR
Sbjct: 20  TGKSSLISTAATETFPETVQPVLPPTRLPADFYPDRVPVTIIDTSSSLEHRAKLAEELKR 79

Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142
           ADAVVLTY+C+  + LSR  ++WL ELRRLE++ P+IV GCKLDLR +    SLE+VM P
Sbjct: 80  ADAVVLTYSCDN-TNLSRPITFWLHELRRLEVRAPVIVVGCKLDLRDERQRISLEQVMSP 138

Query: 143 IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIF 202
           IMQQFREIETC+ECSA + +QVPDVFYYAQKAVLHPTAPLFD + QTLKPRC+RALKRIF
Sbjct: 139 IMQQFREIETCIECSAASQVQVPDVFYYAQKAVLHPTAPLFDQETQTLKPRCIRALKRIF 198

Query: 203 IICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF 262
           I+CD DMDGAL+DAELNEFQV+CFNAPLQPAEIVGVKRVVQEK  DGVN LGLTLSGFLF
Sbjct: 199 ILCDRDMDGALSDAELNEFQVQCFNAPLQPAEIVGVKRVVQEKLPDGVNHLGLTLSGFLF 258

Query: 263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIF 322
           LHALFIEKGRLETTW VLRKFGY D ++L   FLP+P K +PDQSVEL SE++EFL+ +F
Sbjct: 259 LHALFIEKGRLETTWTVLRKFGYDDAIKLSGSFLPIPAKRAPDQSVELTSESLEFLKRVF 318

Query: 323 GLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLL 382
            L+DIDNDGA+R  +L+DLF TAPESPW EAPY+DAAE TA+G L+L GF+S+WALMTLL
Sbjct: 319 NLFDIDNDGALRHDDLDDLFSTAPESPWHEAPYRDAAERTAMGALSLNGFLSEWALMTLL 378

Query: 383 DPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNS 442
           DP  SLANLIY+GY GDP++ALR TR+RS+DRKK+QTERNVF+C++FGP+NAGKS+LL S
Sbjct: 379 DPASSLANLIYIGYAGDPSSALRATRRRSLDRKKRQTERNVFQCVVFGPKNAGKSSLLTS 438

Query: 443 FLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI 502
           FL RPFS NY  T  E+YA N +D+  G +KTLIL+EIPE+  KK LSNK++LA+CD  I
Sbjct: 439 FLGRPFSGNYTSTVDERYATNGIDELQGTRKTLILREIPEDRFKKFLSNKQSLAACDAAI 498

Query: 503 FVYD 506
           FVYD
Sbjct: 499 FVYD 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150036254|gb|ABR67417.1| ATP/GTP/Ca++ binding protein [Cucumis melo subsp. melo]

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/500 (71%), Positives = 427/500 (85%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SGGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR ++   SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDRGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+EAPYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNEAPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYSGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP G KKTLIL+EIPE+GVK
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEGTKKTLILREIPEDGVK 490

Query: 487 KILSNKEALASCDVTIFVYD 506
           K+LS+KE+LA+CD+ +FV+D
Sbjct: 491 KLLSSKESLAACDIALFVHD 510

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462328|ref|XP_004148893.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/497 (70%), Positives = 420/497 (84%), Gaps = 2/497 (0%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R  VR+VV GDRGTGKSSLIAAAATES P+ VP V  PT LP DFY D VP+TIID+SSS
Sbjct: 8   RPSVRIVVAGDRGTGKSSLIAAAATESFPDNVPSVLPPTHLPADFYADGVPLTIIDSSSS 67

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
           ++NK KL EELKRADAV+LTYAC+Q  TL+RL+SYWL ELR+LE+K P+I+ GCKLDLR 
Sbjct: 68  MDNKSKLYEELKRADAVLLTYACDQPMTLNRLTSYWLNELRQLEVKAPVILVGCKLDLRD 127

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
           +H+  S+E+++ PIM+QFREIETC+ECSA T++QVP+VFYYAQ+AVLHPTAPLFD + Q+
Sbjct: 128 EHHPMSMEDIVAPIMKQFREIETCIECSAATLLQVPEVFYYAQRAVLHPTAPLFDLERQS 187

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDG 249
           LKPRC  AL+R+F +CD DMDGAL+D ELNEFQVKCFNAPLQPAEIVGVKR+VQE    G
Sbjct: 188 LKPRCKNALRRVFTLCDRDMDGALSDEELNEFQVKCFNAPLQPAEIVGVKRIVQENLPSG 247

Query: 250 VNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVE 309
           VND GLTL GFLFLHALFIEKGRLETTWAVLRKFGY DDL L  D+LPVP+K +PDQS+E
Sbjct: 248 VNDRGLTLPGFLFLHALFIEKGRLETTWAVLRKFGYDDDLNLSGDYLPVPSKQAPDQSME 307

Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
           L++EA++FLRG+F L D DNDGA+RP ELE+LF TAPESPWDE PYKD+AE TALGNLTL
Sbjct: 308 LSNEALDFLRGVFQLLDTDNDGALRPTELEELFSTAPESPWDEPPYKDSAERTALGNLTL 367

Query: 370 KGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLF 429
            GF+S+WALMT+LDP  SLANLIY+GYGGDPA ALRVTR+R VDRKKQ+TERNVF+C +F
Sbjct: 368 NGFLSQWALMTILDPPRSLANLIYIGYGGDPAKALRVTRRRLVDRKKQKTERNVFQCFVF 427

Query: 430 GPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL 489
           GP+ AGKSA+LN+ + R    N    T + Y +N++++  G +KTLIL+EIPE+GV K L
Sbjct: 428 GPKKAGKSAILNTLIRRSHLNNXRWLTEDGYVMNMLER--GGQKTLILREIPEDGVHKFL 485

Query: 490 SNKEALASCDVTIFVYD 506
           SN+E LA CDV +FVYD
Sbjct: 486 SNEECLAGCDVAVFVYD 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442827|ref|XP_004139182.1| PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/500 (71%), Positives = 426/500 (85%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SRGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR +    SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDEDQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDHGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+E+PYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNESPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYPGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP G KKTLIL+EIPE+GVK
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEGTKKTLILREIPEDGVK 490

Query: 487 KILSNKEALASCDVTIFVYD 506
           K+LS+KE+LA+CD+ +FV+D
Sbjct: 491 KLLSSKESLAACDIALFVHD 510

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482860|ref|XP_004156425.1| PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis sativus]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/501 (70%), Positives = 426/501 (85%), Gaps = 1/501 (0%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT 66
           S  RT VR+V+ GDRGTGKSSLI  AA ++ P  VPPV  PTRLP DFYPDRVP TIIDT
Sbjct: 11  SRGRTEVRIVIAGDRGTGKSSLIVTAAADNFPVNVPPVLPPTRLPEDFYPDRVPTTIIDT 70

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
           SS  E+  K+ EELKRADAVVLTYAC+Q +TL RLS++WLP+LR+LE++VP+IV GCKLD
Sbjct: 71  SSRTEDSAKVAEELKRADAVVLTYACDQPNTLDRLSTFWLPKLRQLEVRVPVIVVGCKLD 130

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHD 186
           LR +    SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD +
Sbjct: 131 LRDEDQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQE 190

Query: 187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQ 246
            QTLKPRCVRALKRIFI+CDHD DGAL+DAELN+FQVKCFNAPLQP+EIVGVKRVVQEK 
Sbjct: 191 TQTLKPRCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQEKL 250

Query: 247 HDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ 306
            +GVND GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +PDQ
Sbjct: 251 PEGVNDHGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNDIKLSDELIPTLGKRAPDQ 310

Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGN 366
           SVEL +EA+EFLRGIF LYD D DGA+RP +LE+LF TAPESPW+E+PYKD+AE  A+G 
Sbjct: 311 SVELTNEALEFLRGIFELYDGDGDGALRPRDLEELFSTAPESPWNESPYKDSAERNAMGG 370

Query: 367 LTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRC 426
           L++  F+S W+LMTLL+P +++ NLIY+GY GDPA+A+RVTRKR +DRKKQQ +RNV +C
Sbjct: 371 LSIDDFLSLWSLMTLLNPVYTIENLIYIGYPGDPASAVRVTRKRRLDRKKQQLDRNVLQC 430

Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGV 485
            +FGP+ AGKS+LL++FL RPFS  Y PTT E+YAVNVVDQP   NKKTLIL+EIPE+GV
Sbjct: 431 FVFGPKKAGKSSLLDAFLARPFSVTYTPTTEERYAVNVVDQPEVRNKKTLILREIPEDGV 490

Query: 486 KKILSNKEALASCDVTIFVYD 506
           KK+LS+KE+LA+CD+ +FV+D
Sbjct: 491 KKLLSSKESLAACDIALFVHD 511

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125274|ref|XP_002319545.1| predicted protein [Populus trichocarpa] gi|222857921|gb|EEE95468.1| predicted protein [Populus trichocarpa]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/503 (69%), Positives = 422/503 (83%), Gaps = 7/503 (1%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           ++GVR+VV GDRGTGKSSLI  A +++ P  +PPV  PTR+P DFYPDRVP+TIIDTSS 
Sbjct: 13  KSGVRIVVAGDRGTGKSSLIVTAISDTFPSSIPPVLPPTRMPDDFYPDRVPITIIDTSSK 72

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
           +E+ GK+ EELKRADAVVLTYAC++  TL RLS++WLPELR+LE+KVP+IV GCKLDLR 
Sbjct: 73  VEDAGKVAEELKRADAVVLTYACDRPETLDRLSTFWLPELRQLEVKVPVIVVGCKLDLRD 132

Query: 130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT 189
           ++   SLE+VM PIMQQFREIETC+ECSA   IQ+P+VFYYAQKAVLHPT PLFD + QT
Sbjct: 133 ENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQESQT 192

Query: 190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEK---- 245
           LKPRCVRALKRIFI+CD D DGAL+DAELNEFQVKCFNAPLQP+EIVGVK+VV+EK    
Sbjct: 193 LKPRCVRALKRIFILCDLDRDGALSDAELNEFQVKCFNAPLQPSEIVGVKKVVEEKLPGG 252

Query: 246 --QHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLS 303
                GVN+ GLTL+GFLFLHALFIEKGRLETTW VLRKFGY +D++L D+ +P   K +
Sbjct: 253 GVNDRGVNERGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKLTDELIP-SFKRA 311

Query: 304 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTA 363
           PDQS EL SEAVE+LR I+ L+D D D  +RPAELED+F TAPESPWDE PYKDAAE TA
Sbjct: 312 PDQSAELTSEAVEYLRNIYELFDSDGDNNLRPAELEDIFSTAPESPWDEPPYKDAAEKTA 371

Query: 364 LGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNV 423
           L  L++  F+S+WALMTLLDP  ++ NLIY+GY GDP AA+R+TR+R +DRKKQQ++RNV
Sbjct: 372 LSGLSVNAFLSEWALMTLLDPSRAVENLIYIGYSGDPTAAVRLTRRRRLDRKKQQSDRNV 431

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F C +FGP+ +GKSAL+NSF+ RPF +NYAPTT E YAV+VVD PGG KKTL+L+EIPE+
Sbjct: 432 FHCFVFGPKKSGKSALVNSFIGRPFYDNYAPTTEESYAVHVVDLPGGIKKTLVLREIPED 491

Query: 484 GVKKILSNKEALASCDVTIFVYD 506
           GVKK+L NKE+LA CD+ +FVYD
Sbjct: 492 GVKKLLLNKESLAPCDIAVFVYD 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2099232	643	MIRO2 "MIRO-related GTP-ase 2"	0.950	0.749	0.680	9.7e-183
TAIR|locus:2146385	648	MIRO1 "MIRO-related GTP-ase 1"	0.948	0.742	0.666	2.5e-177
TAIR|locus:2096224	648	MIRO3 "MIRO-related GTP-ase 3"	0.948	0.742	0.506	2e-127
UNIPROTKB|Q5ZM83	618	RHOT2 "Mitochondrial Rho GTPas	0.930	0.763	0.435	3.9e-99
UNIPROTKB|G1K237	631	RHOT1 "Mitochondrial Rho GTPas	0.928	0.746	0.430	2.8e-98
UNIPROTKB|F1NSQ4	618	RHOT1 "Mitochondrial Rho GTPas	0.928	0.762	0.428	3.5e-98
UNIPROTKB|Q2HJF8	631	RHOT1 "Mitochondrial Rho GTPas	0.928	0.746	0.430	4.5e-98
UNIPROTKB|F1PP14	691	RHOT1 "Mitochondrial Rho GTPas	0.928	0.681	0.428	4.5e-98
UNIPROTKB|J9NUJ0	720	RHOT1 "Mitochondrial Rho GTPas	0.928	0.654	0.428	4.5e-98
UNIPROTKB|F1P577	547	RHOT2 "Mitochondrial Rho GTPas	0.930	0.862	0.431	5.8e-98

TAIR|locus:2099232 MIRO2 "MIRO-related GTP-ase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1773 (629.2 bits), Expect = 9.7e-183, P = 9.7e-183
 Identities = 328/482 (68%), Positives = 401/482 (83%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI+A A+E+ P+ VP V  P  LP D +PD +P+TI+DT SS++N+ KL EE ++AD
Sbjct:    27 KSSLISAVASETFPDNVPRVLPPITLPADAFPDYIPITIVDTPSSIDNRIKLIEEFRKAD 86

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
              V+LTYAC+Q STL RLSSYWLPELRRLEIK P+IV GCKLDLR + +   LE++M PIM
Sbjct:    87 VVLLTYACDQPSTLDRLSSYWLPELRRLEIKAPVIVVGCKLDLRDERSPARLEDIMSPIM 146

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             +++REIETC+ECSA T+IQVPDVFY+A KAVLHPT PLFD ++Q LKPR  RA++RIF +
Sbjct:   147 KEYREIETCIECSALTLIQVPDVFYFASKAVLHPTFPLFDQEKQCLKPRLRRAVQRIFNL 206

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
             CDHD+DGALNDAELN+FQV CF APL P E++GVK+VVQE+Q DGV DLGLTL GFLFL 
Sbjct:   207 CDHDLDGALNDAELNDFQVNCFGAPLDPVELMGVKKVVQERQPDGVTDLGLTLPGFLFLF 266

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGL 324
             +LFIE+GR ET WA+LRK GY D LEL  + LPVP K SPDQS+EL +EA++FL GIF L
Sbjct:   267 SLFIERGRPETAWAILRKCGYNDSLELHAELLPVPAKQSPDQSIELTNEAMDFLSGIFQL 326

Query:   325 YDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDP 384
             YD+DNDGA++PAEL+DLF TAP+SPW E PYK+AAE T  G+LT+ GF+S+WALMTLLDP
Sbjct:   327 YDLDNDGALQPAELDDLFQTAPDSPWLEDPYKEAAEKTPGGSLTINGFLSEWALMTLLDP 386

Query:   385 RHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL 444
             R SLANL Y+GYG DPA+   VTRKRSVDRKKQ+TERNVF+C +FGP+ +GKSALL+SFL
Sbjct:   387 RKSLANLTYIGYGHDPASTFSVTRKRSVDRKKQRTERNVFQCFVFGPKKSGKSALLDSFL 446

Query:   445 ERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504
              R FS +Y  T GE+YA NV+DQPGG+KKTLIL+EIPE+ VKK L+NKE+LA+CDV + V
Sbjct:   447 GRKFSNSYKATMGERYAANVIDQPGGSKKTLILREIPEDRVKKFLTNKESLAACDVAVVV 506

Query:   505 YD 506
             YD
Sbjct:   507 YD 508

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2146385 MIRO1 "MIRO-related GTP-ase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 322/483 (66%), Positives = 394/483 (81%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI AAAT+S P  VPPV    +LP +F+PD +PVTI+DTSS  E++  + EELKRAD
Sbjct:    30 KSSLIVAAATDSFPPNVPPVLPDYKLPIEFFPDGIPVTIVDTSSRPEDRDIVAEELKRAD 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
             AVVLTYAC++  TL RLS YWLPELRRLE+K+PIIVAGCKLD R D+N  SLE+VM PIM
Sbjct:    90 AVVLTYACDRPETLERLSEYWLPELRRLEVKIPIIVAGCKLDFRDDNNQVSLEQVMSPIM 149

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             QQFREIETC+ECSA   +Q  +VFYYAQK VLHPT PLFD D Q LKPRCVRALKRIFI+
Sbjct:   150 QQFREIETCIECSALKQLQAQEVFYYAQKTVLHPTGPLFDQDSQALKPRCVRALKRIFIL 209

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
             CDHD DGAL++AELN+FQVKCF+APLQP+EI GVKRVVQEK  +GVN+ GLT++GFLFLH
Sbjct:   210 CDHDRDGALSEAELNDFQVKCFHAPLQPSEIEGVKRVVQEKLPEGVNERGLTVTGFLFLH 269

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPT-KLSPDQSVELASEAVEFLRGIFG 323
             ALFIEKGRLETTW VLRKFGY +D+ L ++ LP    K +PDQS EL + A++FL+G++ 
Sbjct:   270 ALFIEKGRLETTWTVLRKFGYNNDIRLAEELLPSAIFKRAPDQSFELTNAAIDFLKGMYM 329

Query:   324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLD 383
             L+D D D  +RP E+EDLF TAPESPW EAPY+DAAE TALG L+   F+S W+LMTLL+
Sbjct:   330 LFDDDQDNNLRPQEIEDLFSTAPESPWKEAPYEDAAEKTALGGLSFDAFLSMWSLMTLLE 389

Query:   384 PRHSLANLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSF 443
             P  S+ NLIY+G+ GDP+ A+RVTR+R +DRKKQQ ER VF+C +FGP NAGKSALLN F
Sbjct:   390 PARSVENLIYIGFPGDPSTAIRVTRRRRLDRKKQQCERKVFQCFVFGPNNAGKSALLNCF 449

Query:   444 LERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF 503
             L R +++N   TT E+YAVN+VD+ G  KKTLI++EIPE+GV+ + S+KE+LA+CD+ +F
Sbjct:   450 LGRSYTDNQESTTDERYAVNMVDESGA-KKTLIMREIPEDGVQGLFSSKESLAACDIAVF 508

Query:   504 VYD 506
             VYD
Sbjct:   509 VYD 511

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;NAS

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0000003 "reproduction" evidence=RCA

GO:0000741 "karyogamy" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

TAIR|locus:2096224 MIRO3 "MIRO-related GTP-ase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 248/490 (50%), Positives = 342/490 (69%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             KSSLI AAA  +    +P +   T LP +F+PDR+P T+IDTSS  E+KGK+ +E+++AD
Sbjct:    27 KSSLIMAAARNTFHPNIPSLLPYTNLPSEFFPDRIPATVIDTSSRPEDKGKVVKEVRQAD 86

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM 144
             A+VLT+A ++  TL RLS YWLP  R+LE++VPIIVAG ++D +  +N  S+E++   +M
Sbjct:    87 AIVLTFAFDRPETLDRLSKYWLPLFRQLEVRVPIIVAGYEVDNKEAYNHFSIEQITSALM 146

Query:   145 QQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFII 204
             +Q+RE+ET ++ SA  + Q  DV YYAQKAV+ P  P+FD +   LKPRC+ ALKRIF++
Sbjct:   147 KQYREVETSIQWSAQRLDQAKDVLYYAQKAVIDPVGPVFDQENNVLKPRCIAALKRIFLL 206

Query:   205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH 264
              DH+MDG L+D ELNE Q KCF+ PL P EI  +K V+Q     GVN+ GLTL GFLFL+
Sbjct:   207 SDHNMDGILSDEELNELQKKCFDTPLVPCEIKQMKNVMQVTFPQGVNERGLTLDGFLFLN 266

Query:   265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPT-KLSPDQSVELASEAVEFLRGIFG 323
                IE+ R++T W +LRKFGY +DL L DD +P  + K   DQSVEL + A+EFLR ++ 
Sbjct:   267 TRLIEEARIQTLWTMLRKFGYSNDLRLGDDLVPYSSFKRQADQSVELTNVAIEFLREVYE 326

Query:   324 LYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLD 383
              +D + D  + P E+  LF TAPESPW +  YKD  E    G L+L+ F+S W+LMTL+D
Sbjct:   327 FFDSNGDNNLEPHEMGYLFETAPESPWTKPLYKDVTEENMDGGLSLEAFLSLWSLMTLID 386

Query:   384 PRHSLANLIYVGY-GGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNS 442
             P  SL  L+Y+ +   DP++A+RVTRKR +DRK++++ER V +C +FGP+NAGKSALLN 
Sbjct:   387 PPRSLEYLMYIRFPSDDPSSAVRVTRKRVLDRKEKKSERKVVQCFVFGPKNAGKSALLNQ 446

Query:   443 FLERPF---SENYAPTTGEQYAVNVVDQPG---GNKKTLILQEIPEEGVKKILSNKEALA 496
             F+ R +   S N   +T E YAVN+V +PG      KTL+L+E+  +    +LS KEALA
Sbjct:   447 FIGRSYDDDSNNNNGSTDEHYAVNMVKEPGVISDTDKTLVLKEVRIKDDGFMLS-KEALA 505

Query:   497 SCDVTIFVYD 506
             +CDV IF+YD
Sbjct:   506 ACDVAIFIYD 515

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

UNIPROTKB|Q5ZM83 RHOT2 "Mitochondrial Rho GTPase 2" [Gallus gallus (taxid:9031)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 214/491 (43%), Positives = 295/491 (60%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + + +L EE+ +A+
Sbjct:    17 KTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQTEDELQEEIAKAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+     +S+E ++ 
Sbjct:    77 VVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ---MGSSMEVIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ L+P C RAL RI
Sbjct:   133 PIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQLRPACSRALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F + D D +  L+D ELN FQ  CF  PL P  +  VK VV +   DGV D GLTL+GFL
Sbjct:   193 FNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDGVQDNGLTLNGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FL+ LFI++GR ETTW +LR+FGY D+LEL DD+L    +L P  S EL     +FL+ +
Sbjct:   253 FLNTLFIQRGRHETTWTILRRFGYDDELELTDDYLYPQFRLPPGCSTELNHLGYQFLQRL 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D D DGA+ PAEL++ F   P  PW    Y     TT  G L+L GF+ +W L+  
Sbjct:   313 FEKHDKDQDGALSPAELQNFFSVFPCMPWGPELYNTVC-TTDKGLLSLHGFLCQWTLIAY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD RH L  L Y+GY           AL VTR++ +D +K QT+RNVF C + G + AGK
Sbjct:   372 LDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVFLCKVLGARGAGK 431

Query:   437 SALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL 495
             SA L +FL R  + +  +P     Y +N V Q  G +K LIL E+  E        K + 
Sbjct:   432 SAFLQAFLGRSLAAQRESPGEPSPYTINTV-QVNGQEKYLILHEVSAE----TQFTKPSD 486

Query:   496 ASCDVTIFVYD 506
             A+CDV   +YD
Sbjct:   487 AACDVACLIYD 497

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISS

GO:0019725 "cellular homeostasis" evidence=ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0047497 "mitochondrion transport along microtubule" evidence=ISS

UNIPROTKB|G1K237 RHOT1 "Mitochondrial Rho GTPase" [Bos taurus (taxid:9913)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 212/492 (43%), Positives = 299/492 (60%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADGGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVGTNEKGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNCGK 444

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R  +         +  YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLTRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYD 506
             L  CDV   VYD
Sbjct:   501 L--CDVVCLVYD 510

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1NSQ4 RHOT1 "Mitochondrial Rho GTPase" [Gallus gallus (taxid:9031)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 211/492 (42%), Positives = 298/492 (60%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + +N  +L  E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQNDEQLYHEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N ++++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKNSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FRISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKNVSDGVADNGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDLEL  ++L    K+ PD + EL   A  FL+ I
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLELTPEYLFPLLKIPPDCTTELNHHAYLFLQSI 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYMPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +  GK
Sbjct:   372 LDVQRCLEYLGYLGYSILAEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVVGMKGCGK 431

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R            +  YA+N V    G +K L+L ++ +    + L++ E 
Sbjct:   432 SGVLQALLGRNLMRQRQIRAEHKSYYAINTV-YVYGQEKYLLLHDVSDS---EFLTDAET 487

Query:   495 LASCDVTIFVYD 506
             +  CDV   VYD
Sbjct:   488 I--CDVVCLVYD 497

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

UNIPROTKB|Q2HJF8 RHOT1 "Mitochondrial Rho GTPase 1" [Bos taurus (taxid:9913)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 212/492 (43%), Positives = 299/492 (60%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADGGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNEKGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNCGK 444

Query:   437 SALLNSFLERPFSENYAPTTGEQ--YAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R  +         +  YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLTRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYD 506
             L  CDV   VYD
Sbjct:   501 L--CDVVCLVYD 510

GO:0047497 "mitochondrion transport along microtubule" evidence=ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISS

GO:0019725 "cellular homeostasis" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1PP14 RHOT1 "Mitochondrial Rho GTPase" [Canis lupus familiaris (taxid:9615)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 211/492 (42%), Positives = 299/492 (60%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    17 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 76

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    77 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 132

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   133 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 192

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   193 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 252

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   253 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 312

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   313 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 371

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N+GK
Sbjct:   372 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNSGK 431

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   432 SGVLQALLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 487

Query:   495 LASCDVTIFVYD 506
             +  CDV   VYD
Sbjct:   488 I--CDVVCLVYD 497

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|J9NUJ0 RHOT1 "Mitochondrial Rho GTPase" [Canis lupus familiaris (taxid:9615)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 211/492 (42%), Positives = 299/492 (60%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI +  +E  PE+VPP      +P D  P+RVP  I+D S + ++  +L++E+ +A+
Sbjct:    30 KTSLIMSLVSEEFPEEVPPRAEEITIPADVTPERVPTHIVDYSEAEQSDEQLHQEISQAN 89

Query:    85 AVVLTYACNQQSTLSRLSSYWLP---ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              + + YA N + ++ +++S W+P   E    + ++P+I+ G K DL      +S+E ++ 
Sbjct:    90 VICIVYAVNNKHSIDKVTSRWIPLINERTDKDSRLPLILVGNKSDLV---EYSSMETIL- 145

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RI
Sbjct:   146 PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRI 205

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F I D D DG LNDAELN FQ  CFN PL P  +  VK VV++   DGV D GLTL GFL
Sbjct:   206 FKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFL 265

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FLH LFI++GR ETTW VLR+FGY DDL+L  ++L    K+ PD + EL   A  FL+  
Sbjct:   266 FLHTLFIQRGRHETTWTVLRRFGYDDDLDLTPEYLFPLLKIPPDCTTELNHHAYLFLQST 325

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D+D D A+ P EL+DLF   P  PW      +   T   G +T +GF+S+W L T 
Sbjct:   326 FDKHDLDRDCALSPDELKDLFKVFPYIPWGP-DVNNTVCTNERGWITYQGFLSQWTLTTY 384

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD +  L  L Y+GY         A+A+ VTR + +D +K+QT+RNVFRC + G +N+GK
Sbjct:   385 LDVQRCLEYLGYLGYSILTEQESQASAITVTRDKKIDLQKKQTQRNVFRCNVIGMKNSGK 444

Query:   437 SALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEA 494
             S +L + L R     +         YA+N V    G +K L+L +I E    + L+  E 
Sbjct:   445 SGVLQALLGRNLMRQKKIRDDHKSYYAINTV-YVYGQEKYLLLHDISES---EFLTEAEI 500

Query:   495 LASCDVTIFVYD 506
             +  CDV   VYD
Sbjct:   501 I--CDVVCLVYD 510

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1P577 RHOT2 "Mitochondrial Rho GTPase 2" [Gallus gallus (taxid:9031)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 212/491 (43%), Positives = 293/491 (59%)

Query:    25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD 84
             K+SLI A   E  PE+VPP      +P D  P++VP  I+D S S + + +L EE+ +A+
Sbjct:    51 KTSLIMALVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSESEQTEDELQEEIAKAN 110

Query:    85 AVVLTYACNQQSTLSRLSSYWLPELR---RLEIKVPIIVAGCKLDLRGDHNATSLEEVMG 141
              V + Y   +++T+ ++ + W+P +        ++PII+ G K DL+     +S+E ++ 
Sbjct:   111 VVCVVYDVTKEATIEKIRTKWIPMVNGGAEKGARIPIILVGNKSDLQ---MGSSMEVIL- 166

Query:   142 PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRI 201
             PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ L+P C RAL RI
Sbjct:   167 PIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQLRPACSRALTRI 226

Query:   202 FIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL 261
             F + D D +  L+D ELN FQ  CF  PL P  +  VK VV +   DGV D GLTL+GFL
Sbjct:   227 FNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDGVQDNGLTLNGFL 286

Query:   262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGI 321
             FL+ LFI++GR ETTW +LR+FGY D+LEL DD+L    +L P  S EL     +FL+ +
Sbjct:   287 FLNTLFIQRGRHETTWTILRRFGYDDELELTDDYLYPQFRLPPGCSTELNHLGYQFLQRL 346

Query:   322 FGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL 381
             F  +D D DGA+ PAEL++ F   P  PW    Y     TT  G L+L GF+ +W L+  
Sbjct:   347 FEKHDKDQDGALSPAELQNFFSVFPCMPWGPELYNTVC-TTDKGLLSLHGFLCQWTLIAY 405

Query:   382 LDPRHSLANLIYVGYG-----GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGK 436
             LD RH L  L Y+GY           AL VTR++ +D +K QT+RNVF C + G +  GK
Sbjct:   406 LDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVFLCKVLGARGEGK 465

Query:   437 SALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEAL 495
             +A L +FL R  + +   P     Y +N V Q  G +K LIL E+  E        K + 
Sbjct:   466 TAFLQAFLGRSLAAQRENPGEPSPYTINTV-QVNGQEKYLILHEVSAE----TQFTKPSD 520

Query:   496 ASCDVTIFVYD 506
             A+CDV   +YD
Sbjct:   521 AACDVACLIYD 531

GO:0003924 "GTPase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019725 "cellular homeostasis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.833.1 hypothetical protein (640 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-85
pfam08356	89	pfam08356, EF_assoc_2, EF hand associated	5e-42
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	1e-29
pfam08355	75	pfam08355, EF_assoc_1, EF hand associated	7e-29
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-21
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-17
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-17
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-14
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-13
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-12
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-12
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-11
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	6e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	8e-10
pfam00071	162	pfam00071, Ras, Ras family	2e-09
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-08
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-08
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	5e-08
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	6e-08
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	8e-08
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-07
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-07
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-07
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	5e-07
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-05
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-05
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-04
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-04
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-04
cd00880	161	cd00880, Era_like, E	2e-04
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-04
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-04
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-04
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	5e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-04
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	7e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	8e-04
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	0.002
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	0.002
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.003
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	0.004
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	0.004

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score =  260 bits (667), Expect = 1e-85
 Identities = 89/168 (52%), Positives = 117/168 (69%)

Query: 11  TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
             VR+V++GD G GKSSLI +  +E  PE VP V     +P D  P+RVP TI+DTSS  
Sbjct: 1   KDVRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRP 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           +++  L  E+++A+ + L Y+ ++ STL R+ + WLP +RRL +KVPII+ G K DLR  
Sbjct: 61  QDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 120

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
            +   LEE M PIM +FREIETCVECSA T+I V +VFYYAQKAVLHP
Sbjct: 121 SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|192013 pfam08356, EF_assoc_2, EF hand associated

 Score =  144 bits (366), Expect = 5e-42
 Identities = 56/88 (63%), Positives = 66/88 (75%)

Query: 227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYG 286
           N PLQP ++ G+KRVVQE+  DGVN+ GLTL GFLFL+ LFIE+GR ETTW +LRKFGY 
Sbjct: 1   NKPLQPEDLEGIKRVVQEEIPDGVNEKGLTLKGFLFLNKLFIERGRHETTWTILRKFGYT 60

Query: 287 DDLELRDDFLPVPTKLSPDQSVELASEA 314
           D L LRDDFL     + PDQSVEL+   
Sbjct: 61  DSLSLRDDFLHPKFDVPPDQSVELSPAG 88

This region predominantly appears near EF-hands (pfam00036) in GTP-binding proteins. It is found in all three eukaryotic kingdoms. Length = 89

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score =  113 bits (286), Expect = 1e-29
 Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 3/88 (3%)

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           +RNVF C + G + +GKSALL +FL R FS+N Y+PT   +YAVN V+ P G +K LIL+
Sbjct: 1   QRNVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVP-GQEKYLILR 59

Query: 479 EIPEEGVKKILSNKEALASCDVTIFVYD 506
           E+ E+    IL N   LA+CDV   VYD
Sbjct: 60  EVGEDEE-AILLNDAELAACDVACLVYD 86

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|192012 pfam08355, EF_assoc_1, EF hand associated

 Score =  108 bits (272), Expect = 7e-29
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYG----GDPAAAL 404
           PW E  + D+  T   G LTL+G++++W+L TLLD + +L  L Y+G+         +A+
Sbjct: 1   PWLETNFPDSTVTNEDGYLTLQGWLAQWSLTTLLDYKTTLEYLAYLGFPVGEQESQTSAI 60

Query: 405 RVTRKRSVDRKKQQT 419
            VTR+R +DRKK QT
Sbjct: 61  TVTRERKLDRKKGQT 75

This region typically appears on the C-terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis). The EF hand associated region is found in yeast, vertebrates and plants. Length = 75

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 88.2 bits (219), Expect = 4e-21
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP--DRVPVTIIDTSSSLE 71
           +VVV+GD+G+GKSSL++       P +   +   T          D   + I D     E
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKL 125
            K +    +K ADA++L Y    + +L+ +S    WLP LR+L  K+P+I+ G KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 79.9 bits (198), Expect = 1e-17
 Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 39/180 (21%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV-------TII 64
           +++VVVGD   GK+ L+ +  T   P E VP V        D Y   V V        + 
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVF-------DNYSANVTVDGKQVNLGLW 53

Query: 65  DTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV 116
           DT+          EE  R         D  +L ++ +  S+   + + W PE++     V
Sbjct: 54  DTAGQ--------EEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNV 105

Query: 117 PIIVAGCKLDLRGDHNATS-LEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVF 168
           PII+ G K+DLR D N    LE+   PI  +      +EI     +ECSA T   + +VF
Sbjct: 106 PIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 50/168 (29%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 16  VVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVTIIDTSSSL 70
           VVVG  G GKSSL+ A     V E V  V   TR  PD Y       +V + ++DT    
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGE-VSDVPGTTRD-PDVYVKELDKGKVKLVLVDTPGLD 58

Query: 71  ENKGKLNEE-----LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL 125
           E  G   EE     L+ AD ++L      + +        L  LR+  I  PII+ G K+
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGI--PIILVGNKI 116

Query: 126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQK 173
           DL        +EE++              E SA T   V ++F    +
Sbjct: 117 DLL---EEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 46/192 (23%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIID-TSSSLENK 73
           +VVVGD   GK+ L+    T + PE                 D VP T+ +  S+ +E  
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPE-----------------DYVP-TVFENYSADVEVD 42

Query: 74  GKL----------NEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK 115
           GK            E+  R         D  ++ ++ +  ++   +   W PE++     
Sbjct: 43  GKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPN 102

Query: 116 VPIIVAGCKLDLRGD-HNATSLEEV-MGPIMQQF-----REIETC--VECSATTMIQVPD 166
           VPII+ G KLDLR D      L +    P+  +      + I     +ECSA T   V +
Sbjct: 103 VPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVRE 162

Query: 167 VFYYAQKAVLHP 178
           VF  A +A L+ 
Sbjct: 163 VFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV---HAPTRLPPDFYPDRVPVTIIDTSS 68
           V++VVVGD G GK+ L+   A  S PE+ VP V   +  T   P+     + + + DT+ 
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKI--IELALWDTAG 61

Query: 69  SLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIV 120
                    E+  R         D +++ Y+ +  ++L  +   W PE+       PI++
Sbjct: 62  --------QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVL 113

Query: 121 AGCKLDLRGDHNATSLEEVMGP-IMQQFREIETC--------VECSATTMIQVPDVFYYA 171
            G K DLR D N+ S     G   +   +             +ECSA  M  V +VF  A
Sbjct: 114 VGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAA 173

Query: 172 QKAVL 176
               L
Sbjct: 174 INVAL 178

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 11/176 (6%)

Query: 12  GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
             ++V+VGD   GK++L+   A +S PE  VP V        +    R+ +++ DTS S 
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSP 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
                       +DAV++ +  ++  TL  +   W  E+R      P+++ GCK DLR D
Sbjct: 61  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTD 120

Query: 131 -HNATSL-EEVMGPI-----MQQFREI--ETCVECSATTM-IQVPDVFYYAQKAVL 176
               T L  +   P+         ++I     VECSA T    V DVF  A  A L
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPP-----VHAPTRLPPDFYPDRVPVTIIDTS 67
            ++VV+GD G GK++L+     +  PE  PP       A T  P   Y   + + + DT+
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP---YRRNIKLQLWDTA 62

Query: 68  SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLD 126
              E +    E  + A+ +++ Y    + +   L+  WL ELR L    VPI++ G K+D
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 127 LRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSA--TTMIQVPDVFYYAQK 173
           L  + +              L  +    +         +E SA   T   V ++F    +
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182

Query: 174 AVLHPTAPLFDHDEQTLKPR 193
            +L     L   +E     R
Sbjct: 183 KLLEEIEKLVLKNELRQLDR 202

Length = 219

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 44/169 (26%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIID 65
            ++V++GD G GK+SL+         E     +  T +  DF    + V        I D
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSEN----YKST-IGVDFKSKTIEVDGKKVKLQIWD 55

Query: 66  TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCK 124
           T+     +   +   + A   +L Y    + +   L   WL EL+      +PII+ G K
Sbjct: 56  TAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLD-KWLNELKEYAPPNIPIILVGNK 114

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIE--TCVECSATTMIQVPDVFYYA 171
            DL  D    S EE      QQF +       E SA T   V + F   
Sbjct: 115 SDLE-DERQVSTEEA-----QQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 13  VRVVVVGDRGTGKSSLIAAAA--TESVPEKVPPVHAPTRLPPDFY------PDRVPVTII 64
           ++ VVVGD   GK+ LI A A        ++   H PT    D Y       +R    + 
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 65  DTSSSLENKGKLNEELK-------RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP 117
             S SL       +  K       R+D V+L ++    ++L  + + W PE+R    +VP
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP 122

Query: 118 IIVAGCKLDLR 128
           +I+ GCKLDLR
Sbjct: 123 VILVGCKLDLR 133

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 57.8 bits (139), Expect = 8e-10
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 11/172 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VVVGD   GK++L+   A +  PE  VP V        +    R+ +++ DTS S   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-- 130
                     +DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 131 -------HNATSLEEVMGPIMQQFREIETCVECSAT-TMIQVPDVFYYAQKA 174
                  H  T +    G  M +     T +ECSA  +   V D+F+ A  A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 24/174 (13%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDT 66
           ++V+VGD G GKSSL+        PE+    + PT +  DFY   + V        I DT
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEE----YIPT-IGVDFYTKTIEVDGKTVKLQIWDT 55

Query: 67  SSSLENKGKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCK 124
            +  E    L     R A   +L Y    + +   +   WL E+ R  +  VPI++ G K
Sbjct: 56  -AGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADENVPIVLVGNK 113

Query: 125 LDLRGDHNATSLEEVMGPIMQQF-REIETC-VECSATTMIQVPDVFYYAQKAVL 176
            DL       S EE      +   +E+    +E SA T   V + F    + +L
Sbjct: 114 CDLEDQR-VVSTEEG-----EALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 30/176 (17%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPV--TIID 65
           ++ V+VGD   GK+SLI +  T   P      + PT    D +      D  PV   + D
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYP----TEYVPTAF--DNFSVVVLVDGKPVRLQLCD 54

Query: 66  TSSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK 124
           T+   +   KL        D  +L ++    S+   +S  W+PE+R+   K PII+ G +
Sbjct: 55  TAGQ-DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQ 113

Query: 125 LDLRGDHN-----ATSLEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVF 168
            DLR D N     A   E+   P+ Q        +I  C  +ECSA T   + +VF
Sbjct: 114 ADLRTDVNVLIQLARYGEK---PVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
             F+ ++ G    GK+ LLN  +   F E Y PT G       ++    N K  +     
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 482 EEGVKKILSNKEALASCDVTIFVYD 506
           +E  + +          +  + VYD
Sbjct: 64  QEEYRSLRPEYY--RGANGILIVYD 86

Length = 219

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 22/178 (12%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPV---HAPTRLPPDFYPDRVPVTIIDTSSSL 70
           ++V+VGD   GK+SL+        PE+  P    +  T    D  P  V + + DT+   
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKP--VQLALWDTAGQE 60

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           E +        +A  +++ +A +   +L  + + W+ E+RR    VP+I+ G K DLR +
Sbjct: 61  EYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQE 120

Query: 131 HNATSLEEVMGPIMQQFREIETC------------VECSATTMIQVPDVFYYAQKAVL 176
             A +          +F  I+              +ECSA T   V DVF  A +A L
Sbjct: 121 --AVAKGN---YATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAAL 173

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 10/178 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+    T + P E +P V              V + + DT+   E
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + +  ++ ++    S+   +   W PE+      VPI++ G K DLR D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 132 NATSL--EEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVLHPTA 180
           +      E+   PI  Q      ++I     +ECSA     V +VF  A +AVL+PT 
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR------GDH-NATS 135
           AD  +L ++   +++   +   W+PELR     VPI++ G KLDLR       DH  A  
Sbjct: 73  ADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFADHPGAVP 132

Query: 136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
           +    G  +++       +ECS+ T   V  VF  A K VL
Sbjct: 133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV-------TII 64
           ++ VVVGD   GK+ L+ +  T + P E +P V        D Y   V V        + 
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-------DNYSANVMVDGKPVNLGLW 54

Query: 65  DTSSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123
           DT+   E+  +L      + D  ++ ++    ++   + + W PE+R      PII+ G 
Sbjct: 55  DTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 113

Query: 124 KLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKA 174
           KLDLR D +      E+ + PI     +   +EI     +ECSA T   +  VF  A +A
Sbjct: 114 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 173

Query: 175 V 175
           V
Sbjct: 174 V 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 36/174 (20%)

Query: 14  RVVVVGDRGTGKSSL-IAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIID 65
           ++VV+G  G GKS+L I   + E V E  P +        D Y  ++ V        I+D
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-------DSYRKQIVVDGETYTLDILD 53

Query: 66  TSSSLENKGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRR--LEIK----VPI 118
           T+   E     ++ ++  D  +L Y+  +++S         +  +R   L +K    VPI
Sbjct: 54  TAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEE------IKNIREQILRVKDKEDVPI 107

Query: 119 IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYY 170
           ++ G K DL  +    S EE      +   E   C  +E SA T I + ++F  
Sbjct: 108 VLVGNKCDL-ENERQVSTEEG-----EALAEEWGCPFLETSAKTNINIDELFNT 155

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
           + ++ G + +GKS+LL+  +   F        G+  AV+ + +  G+   L + +     
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTL-EVDGDTGLLNIWD-FGGR 58

Query: 485 VKKILSNKEALASCDVTIFVYD 506
            +    +   +   D  + VYD
Sbjct: 59  EELKFEHIIFMKWADAILLVYD 80

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 26/181 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD------RVPVTIIDTS 67
           ++V+VGD   GK+ L+   + +  PE    V+ PT    ++  D      +V + + DT+
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTVFE-NYVADIEVDGKQVELALWDTA 57

Query: 68  SSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLD 126
              E+  +L        D +++ ++ +   +L  +   W PE++     VPII+ G K D
Sbjct: 58  GQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 116

Query: 127 LRGDHNATSLEEVM-----------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
           LR D    ++ E+            G  M +       +ECSA T   V +VF  A +A 
Sbjct: 117 LRND--EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAA 174

Query: 176 L 176
           L
Sbjct: 175 L 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 12/175 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ + A ++ PE+ VP V     +       +  + + DT+   E
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ-E 59

Query: 72  NKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           +  +L        D  ++ ++    ++   +   W+PEL+     VP ++ G ++DLR D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDD 119

Query: 131 HN--ATSLEEVMGPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVL 176
               A   +    PI  +      +EI  C  VECSA T   +  VF  A  A+L
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VVVGD   GK++L+   A ++ PE  VP V        +    R+ + + DTS S   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
                     +DAV++ +  ++  TL  +   W  E +       +++ GCKLD+R D +
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 133 ATSLEEV----MGPIMQQ-----FREIETC--VECSATTMIQ-VPDVFYYAQKAVLHPTA 180
             +L E+    + P+  +      R++     VECS+      V DVF+    A +    
Sbjct: 123 --TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREH 180

Query: 181 PLFDHDEQTLKPRCVRALKRI 201
           P              R LKRI
Sbjct: 181 PSLKRSTSR------RGLKRI 195

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DFYPDRVPVT 62
           G  S      +++++GD G GKSSL+ +  + SV +  P +    ++        R+ +T
Sbjct: 6   GQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLT 65

Query: 63  IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK---VPII 119
           I DT+     +   +   + A  ++L Y   ++ T + LS  W  E+         V ++
Sbjct: 66  IWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKML 125

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQ---FRE--------IETCVECSATTMIQVPDVF 168
           V G K+D R      S EE M    +    F E        +E C E  A  +++VP + 
Sbjct: 126 V-GNKVD-RESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLL 183

Query: 169 YYAQKAV 175
                AV
Sbjct: 184 EEGSTAV 190

Length = 211

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++V+VGD   GK++++   A +  PE  VP V        +    RV +++ DTS S   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-- 130
                     +DAV+L +  ++          W  E+        I++ GCK DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 131 -------HNATSLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLHPTAPL 182
                       +    G  M +    E  +ECSA T+   +  +F  A    ++  +PL
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 40/175 (22%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF------YPD-RVPVTIID 65
            +++++GD G GKSSL++        E+    +  T +  DF          RV + I D
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQ----YKST-IGVDFKTKTIEVDGKRVKLQIWD 55

Query: 66  TSSSLENKGKLNEELKR---------ADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIK 115
           T+          +E  R         A   +L Y    + +   L + WL ELR      
Sbjct: 56  TAG---------QERFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYASPN 105

Query: 116 VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           V I++ G K DL  +    S EE      + F E       E SA T   V + F
Sbjct: 106 VVIMLVGNKSDLE-EQRQVSREEA-----EAFAEEHGLPFFETSAKTNTNVEEAF 154

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 427 LLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIP-- 481
           ++ G    GKS+LLN+ L     E       T      V  +D+    K  L+L + P  
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKG---KVKLVLVDTPGL 57

Query: 482 -EEGVKKILSN-KEALASCDVTIFVYD 506
            E G        +  L   D+ + V D
Sbjct: 58  DEFGGLGREELARLLLRGADLILLVVD 84

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 30/184 (16%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRV-----PVTI--I 64
           ++ VVVGD   GK+ L+ +  T   P E VP V        D Y   V     P T+   
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-------DNYAVTVMIGGEPYTLGLF 54

Query: 65  DTSSSLENKGKLNE-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC 123
           DT+   E+  +L      + D  ++ ++    S+   +   W+PE+     K P ++ G 
Sbjct: 55  DTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 113

Query: 124 KLDLRGDHNATSLEEV----MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQ 172
           ++DLR D   +++E++      PI  +      R+++    VECSA T   + +VF  A 
Sbjct: 114 QIDLRDD--PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Query: 173 KAVL 176
            A L
Sbjct: 172 LAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 22/177 (12%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPD--RVPVTIIDTSS 68
           +VVV+GD   GK+SL+        P+    V+ PT       D + D   V +++ DT+ 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQ----VYEPTVFENYIHDIFVDGLAVELSLWDTAG 57

Query: 69  SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
             E     +        ++L ++ +   +L  + S WL E+R     V +++   K DLR
Sbjct: 58  QEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLR 117

Query: 129 GDHNATSLEEVMGPIMQQFRE-------IETC--VECSATTMIQVPDVFYYAQKAVL 176
              N    E   G     + E       I  C  +ECSA     V + F  A +  L
Sbjct: 118 EPRN----ERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL 170

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 428 LFGPQNAGKSALLNSFLERPFSE--NYAPTTGEQYAVNVVDQPGGNKKTLI----LQEIP 481
           +FG  N GKS+LLN+ L +          TT +         P G    LI    L E  
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGP-VVLIDTPGLDEEG 60

Query: 482 EEGVKKILSNKEALASCDVTIFVYD 506
             G +++   ++     D+ + V D
Sbjct: 61  GLGRERVEEARQVADRADLVLLVVD 85

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           F+ +L G    GK++LL  F++  FSENY  T G  +    ++  G   K + LQ
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDG---KKVKLQ 52

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 425 RCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT--------GEQYAVNVVDQPGGNKKT 474
           R  L G  N GKS L+N+    +     +Y  TT        G    + +VD PG     
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPG----- 55

Query: 475 LILQEIPEEGVKKILSNKEALASCDVTIFVYD 506
           LI      +GV+      EA+   D+ + V D
Sbjct: 56  LIEGASEGKGVEGFNRFLEAIREADLILLVVD 87

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 30/170 (17%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           RVVV G  G GKSSL+      +  E  +P +    R           + I DT+ S + 
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK------VPIIVAGCKLD 126
                  + +  A +L Y+   + +L  L   +  EL   EIK      +PI++ G K D
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIY--ELIC-EIKGNNLEKIPIMLVGNKCD 119

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETC--------VECSATTMIQVPDVF 168
                  +   EV         E            +E SA T   V ++F
Sbjct: 120 ------ESPSREV------SSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 33/171 (19%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAPTRLPPDFYPDRVPVTIIDTSSS 69
           R+V +G  G GK++LI     ++   K    V  +H       +    +V + I+DTS S
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELH---SKEYEVAGVKVTIDILDTSGS 57

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRR--LEIK----VPIIVAGC 123
                     ++  DA  L Y+ +   +   +       LR   LE+K    VPI+V G 
Sbjct: 58  YSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKR-----LREEILEVKEDKFVPIVVVGN 112

Query: 124 KLDLRG-----DHNATSLEEVMGPIMQQFREIETC-VECSATTMIQVPDVF 168
           K+D          +A S  E+         +     VE SA     V +VF
Sbjct: 113 KIDSLAERQVEAADALSTVEL---------DWNNGFVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 13  VRVVVVGDRGTGKSSL-IAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            +V++VG  G GKS+L +     E V +  P      R       + V + I+DT+   +
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGD 130
                +   +  +  +L ++     + + L+ +    LR + +  VP+++ G K DL  D
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLE-D 119

Query: 131 HNATSLEEVMGPIMQ---QFREIETCVECSATTMIQVPDVFY 169
               S+EE      Q    +      VE SA T   V  VF+
Sbjct: 120 KRQVSVEEAANLAEQWGVNY------VETSAKTRANVDKVFF 155

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR---VPVTIIDTSSS 69
           ++VV++GD   GK+SL+         + V  V         FY  +     ++I DT+  
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGA------FYLKQWGPYNISIWDTAGR 54

Query: 70  LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG 129
            +  G  +   + A AV+LTY  +   +L  L   +L             V G KLDL  
Sbjct: 55  EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 130 DHNATSLEEVMGP 142
           +      E+  G 
Sbjct: 115 EGALAGQEKDAGD 127

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVP---PVHAPTRLPPDFYPDRVPVTIIDTSSSL 70
           + +++GD G GKS L+     +      P    V   TR+  +    ++ + I DT+   
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI-IEVNGQKIKLQIWDTAGQE 62

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRG 129
             +       + A   ++ Y   ++ST + LSS WL + R L      I + G K DL  
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEA 121

Query: 130 DHNATSLEEVMGPIMQQFREIE--TCVECSATTMIQVPDVFYYAQKAV 175
             + T  E        QF +      +ECSA T   V D F    K +
Sbjct: 122 QRDVTYEEAK------QFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 24/166 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +VVV+G  G GKS+L     + +  EK  P         DFY      D  P    I+DT
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPT------IEDFYRKEIEVDSSPSVLEILDT 56

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCK 124
           + + +     +  +K     ++ Y+   Q T   +      +  ++  E KVPII+ G K
Sbjct: 57  AGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYE-KVPIILVGNK 115

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           +DL  +   +S E       +   E   C  +E SA +   V ++F
Sbjct: 116 VDLESEREVSSAEG------RALAEEWGCPFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 26/168 (15%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIID 65
           ++++++GD G GKSSL+     ++  E      + T +  DF          +V + I D
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDED----LSST-IGVDFKVKTVTVDGKKVKLAIWD 55

Query: 66  TSSSLENKGKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAG 122
           T+   E    L     R A  V+L Y   ++ T   L   WL EL           ++ G
Sbjct: 56  TAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVG 113

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
            K+D           EV     Q+F        +E SA T I V   F
Sbjct: 114 NKIDKEN-------REVTREEGQKFARKHNMLFIETSAKTRIGVQQAF 154

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIP- 481
            + ++ G  N GKS LLN  L    S   Y P T   Y   V+++  G      L +   
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAG 60

Query: 482 EEGVKKI--LSNKEALAS---CDVTIFVYD 506
           +E    I  L  +   +S    D+ I V D
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLD 90

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQ 478
           F+ +L G    GKS+LL+ F +  FSE Y  T G  +    ++  G   K + LQ
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG---KRVKLQ 52

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 409 KRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTTG--------- 457
           K  ++  K +   + F+  + G  N GKS+LLN+ L  +R    +   TT          
Sbjct: 189 KDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL 248

Query: 458 EQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506
               + ++D  G  +    ++ +   G++K  S K A+   D+ I+V D
Sbjct: 249 NGILIKLLDTAGIREHADFVERL---GIEK--SFK-AIKQADLVIYVLD 291

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	100.0
COG1160	444	Predicted GTPases [General function prediction onl	100.0
PRK03003	472	GTP-binding protein Der; Reviewed	100.0
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.97
PRK00093	435	GTP-binding protein Der; Reviewed	99.97
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.97
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.96
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.96
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.96
PF08356	89	EF_assoc_2: EF hand associated; InterPro: IPR01356	99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.96
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.95
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.95
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.95
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.95
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.95
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.95
KOG0394	210	consensus Ras-related GTPase [General function pre	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.94
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.94
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.94
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.94
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.94
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.94
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.93
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.93
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.93
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.93
PTZ00369	189	Ras-like protein; Provisional	99.93
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.93
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.93
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.93
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.93
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.93
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.93
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.93
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.93
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.93
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.93
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.93
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.93
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.93
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.93
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.93
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.93
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.93
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.93
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.92
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.92
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.92
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.92
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.92
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.92
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.92
PLN03110	216	Rab GTPase; Provisional	99.92
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.92
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.92
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.92
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.92
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.92
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.92
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.92
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.92
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.92
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.92
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.92
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.92
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.92
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.92
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.91
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.91
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.91
PLN03118	211	Rab family protein; Provisional	99.91
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.91
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.91
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.91
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.91
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.91
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.91
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.91
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.91
PLN00223	181	ADP-ribosylation factor; Provisional	99.91
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.91
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.91
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.91
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.9
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.9
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.9
PLN03108	210	Rab family protein; Provisional	99.9
PTZ00133	182	ADP-ribosylation factor; Provisional	99.9
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.9
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.9
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.9
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.89
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.89
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.89
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.89
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.89
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.89
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.89
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.89
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.88
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.88
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.88
KOG0395	196	consensus Ras-related GTPase [General function pre	99.88
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.88
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.88
COG0486	454	ThdF Predicted GTPase [General function prediction	99.87
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.87
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.87
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.87
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.87
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.87
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.86
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.86
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.86
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.85
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.85
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.85
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.85
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.85
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.84
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.84
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.84
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.84
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.83
PRK15494	339	era GTPase Era; Provisional	99.83
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.83
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.82
PRK12299	335	obgE GTPase CgtA; Reviewed	99.82
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.81
PLN00023	334	GTP-binding protein; Provisional	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.8
COG1100	219	GTPase SAR1 and related small G proteins [General	99.8
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.8
PRK04213	201	GTP-binding protein; Provisional	99.8
PRK03003	472	GTP-binding protein Der; Reviewed	99.8
cd00881	189	GTP_translation_factor GTP translation factor fami	99.8
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.8
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.79
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.79
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.79
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.79
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.79
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.78
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.78
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.78
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.78
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.78
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.78
PRK00089	292	era GTPase Era; Reviewed	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.77
PTZ00099	176	rab6; Provisional	99.77
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.77
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.77
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.77
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.77
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.77
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.76
PRK12298	390	obgE GTPase CgtA; Reviewed	99.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.76
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.76
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.76
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.76
PRK12297	424	obgE GTPase CgtA; Reviewed	99.75
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.75
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.75
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.74
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.74
PRK00093	435	GTP-binding protein Der; Reviewed	99.74
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.74
PRK11058	426	GTPase HflX; Provisional	99.74
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.73
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.73
KOG0394	210	consensus Ras-related GTPase [General function pre	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.72
PRK12296	500	obgE GTPase CgtA; Reviewed	99.72
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.72
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.72
CHL00189	742	infB translation initiation factor 2; Provisional	99.72
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.72
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.72
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.71
PRK05306	787	infB translation initiation factor IF-2; Validated	99.71
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.71
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.7
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.7
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.7
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.67
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.67
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.67
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.67
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.67
PF08355	76	EF_assoc_1: EF hand associated; InterPro: IPR01356	99.67
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.67
COG0218	200	Predicted GTPase [General function prediction only	99.67
KOG1673	205	consensus Ras GTPases [General function prediction	99.66
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.65
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.65
PRK05433	600	GTP-binding protein LepA; Provisional	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.65
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.65
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.65
PRK12317	425	elongation factor 1-alpha; Reviewed	99.65
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.64
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.64
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.63
PRK10218	607	GTP-binding protein; Provisional	99.63
PRK00007	693	elongation factor G; Reviewed	99.63
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.63
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.63
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.63
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.62
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.62
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.62
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.61
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.61
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.61
PRK13351	687	elongation factor G; Reviewed	99.61
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.61
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.6
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.6
COG2229	187	Predicted GTPase [General function prediction only	99.6
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.6
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.59
PRK12739	691	elongation factor G; Reviewed	99.58
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.58
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.58
PRK04004	586	translation initiation factor IF-2; Validated	99.57
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.57
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.57
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.57
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.57
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.57
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.57
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.57
PRK12736	394	elongation factor Tu; Reviewed	99.56
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.56
PRK12289	352	GTPase RsgA; Reviewed	99.56
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.56
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.55
PRK12735	396	elongation factor Tu; Reviewed	99.55
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.55
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.55
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.55
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.55
COG1084	346	Predicted GTPase [General function prediction only	99.55
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.54
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.54
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.54
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.54
CHL00071	409	tufA elongation factor Tu	99.53
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.53
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.53
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.53
COG2262	411	HflX GTPases [General function prediction only]	99.53
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.52
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.52
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.52
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.52
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.52
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.52
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.52
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.51
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.51
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.51
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.51
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.51
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.51
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.51
PLN00023	334	GTP-binding protein; Provisional	99.5
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.5
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.5
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.5
PLN03110	216	Rab GTPase; Provisional	99.5
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.5
PRK12288	347	GTPase RsgA; Reviewed	99.5
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.5
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.49
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.49
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.49
COG3596	296	Predicted GTPase [General function prediction only	99.49
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.49
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.48
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.48
PLN03127	447	Elongation factor Tu; Provisional	99.48
PRK00049	396	elongation factor Tu; Reviewed	99.48
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.48
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.48
PTZ00369	189	Ras-like protein; Provisional	99.48
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.48
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.48
PRK09866	741	hypothetical protein; Provisional	99.48
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.47
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.47
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.47
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.47
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.47
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.47
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.46
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.46
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.46
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.46
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.46
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.46
COG0536	369	Obg Predicted GTPase [General function prediction	99.46
PLN03126	478	Elongation factor Tu; Provisional	99.46
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.46
PRK12740	668	elongation factor G; Reviewed	99.45
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.45
COG1163	365	DRG Predicted GTPase [General function prediction	99.45
PLN03108	210	Rab family protein; Provisional	99.45
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.44
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.44
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.44
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.44
PRK00098	298	GTPase RsgA; Reviewed	99.44
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.43
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.43
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.43
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.42
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.42
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.42
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.42
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.42
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.42
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.41
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.41
PLN03118	211	Rab family protein; Provisional	99.41
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.41
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.41
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.41
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.4
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.4
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.39
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.39
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.39
PRK09602	396	translation-associated GTPase; Reviewed	99.38
PLN00043	447	elongation factor 1-alpha; Provisional	99.38
PTZ00141	446	elongation factor 1- alpha; Provisional	99.38
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.38
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.37
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.37
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.36
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.36
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.36
COG1100	219	GTPase SAR1 and related small G proteins [General	99.36
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.36
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.35
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.35
KOG1145	683	consensus Mitochondrial translation initiation fac	99.34
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.34
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.34
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.33
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.33
PTZ00133	182	ADP-ribosylation factor; Provisional	99.33
PLN00223	181	ADP-ribosylation factor; Provisional	99.32
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.32
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.32
COG0486	454	ThdF Predicted GTPase [General function prediction	99.31
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.3
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.3
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.29
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.29
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.29
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.29
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.29
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.29
PRK13796	365	GTPase YqeH; Provisional	99.29
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.28
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.27
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.27
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.27
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.27
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.27
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.26
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.26
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.26
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.25
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.25
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.25
KOG0090	238	consensus Signal recognition particle receptor, be	99.24
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.23
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.23
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.23
COG1159	298	Era GTPase [General function prediction only]	99.23
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.22
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.21
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.21
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.21
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.2
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.2
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.18
PRK13768	253	GTPase; Provisional	99.18
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.18
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.17
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.17
KOG0395	196	consensus Ras-related GTPase [General function pre	99.16
PRK14845	1049	translation initiation factor IF-2; Provisional	99.16
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.16
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.16
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.15
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.15
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.14
PRK15494	339	era GTPase Era; Provisional	99.13
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.13
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.12
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.12
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.12
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.12
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.11
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.11
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.1
PTZ00258	390	GTP-binding protein; Provisional	99.1
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.09
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.09
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.08
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.08
PRK07560	731	elongation factor EF-2; Reviewed	99.08
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.08
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.08
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.07
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.07
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.05
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.05
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.04
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.04
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.04
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.04
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.03
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.03
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.03
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.02
COG1161	322	Predicted GTPases [General function prediction onl	99.02
PTZ00416	836	elongation factor 2; Provisional	99.02
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.99
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.99
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.99
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.99
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.97
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.96
COG1162	301	Predicted GTPases [General function prediction onl	98.96
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.95
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.94
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.94
PRK00089	292	era GTPase Era; Reviewed	98.93
PRK04213	201	GTP-binding protein; Provisional	98.92
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.91
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.91
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.9
PRK11058	426	GTPase HflX; Provisional	98.9
KOG1673	205	consensus Ras GTPases [General function prediction	98.89
PRK09601	364	GTP-binding protein YchF; Reviewed	98.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.89
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.87
KOG0410	410	consensus Predicted GTP binding protein [General f	98.87
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.86
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.86
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.86
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.85
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	98.85
cd00881	189	GTP_translation_factor GTP translation factor fami	98.85
KOG0037	221	consensus Ca2+-binding protein, EF-Hand protein su	98.84
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.84
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.84
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.83
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.82
PRK01889	356	GTPase RsgA; Reviewed	98.81
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.8
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.8
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.79
KOG2486	320	consensus Predicted GTPase [General function predi	98.78
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.77
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.76
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	98.76
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.75

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=100.00  E-value=6.2e-92  Score=702.96  Aligned_cols=499  Identities=54%  Similarity=0.886  Sum_probs=466.2

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccC
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (507)
                      |+....++.+||+++|+.||||||||-+|+...|+.++|+..+.++++.++.+..+...|+||+..++........++.|
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA   80 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA   80 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence            34455778899999999999999999999999999999999999999999999999999999998777777778999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      |++++||+++++.|.+.+..+|++.+++..   .++|||+||||+|+...... +.+..+..++.+|.++..+++|||++
T Consensus        81 ~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~  159 (625)
T KOG1707|consen   81 DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALT  159 (625)
T ss_pred             CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhh
Confidence            999999999999999999999999999987   68999999999999876555 44556899999999999999999999


Q ss_pred             CCCchHHHHHHHHHHcCCCCCCCccchhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKR  240 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~  240 (507)
                      -.++.++|....+++++|..|+|+...+.+.++|.++|.|+|.+||.|.|+.|+++|++.+|++||+.++++.+++.++.
T Consensus       160 ~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~  239 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKN  239 (625)
T ss_pred             hhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHH
Q 010548          241 VVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRG  320 (507)
Q Consensus       241 ~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~  320 (507)
                      ++.+.+|+|+...++|+.|||+|+++|+++||+||+|++||+|||+|+|+|..+|+|..+.++|+|++|||+.|++||..
T Consensus       240 vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~  319 (625)
T KOG1707|consen  240 VVQEICPDGVYERGLTLPGFLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVD  319 (625)
T ss_pred             HHHhhcCchhhhccccccchHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999548999999999999999999999


Q ss_pred             hhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhhhcCHHHHHHHHHhhCCCCC-
Q 010548          321 IFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGGD-  399 (507)
Q Consensus       321 ~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~d~~~~l~~l~~lg~~~~-  399 (507)
                      +|++||+|+||+|+++|++++|+++|+.||....+....+.+..|++|++||+|+|.++|++|+..+++||.|+||+.. 
T Consensus       320 ~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~  399 (625)
T KOG1707|consen  320 VFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDA  399 (625)
T ss_pred             HHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999976 


Q ss_pred             --ccccceeccccchhhhhccccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEE
Q 010548          400 --PAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL  477 (507)
Q Consensus       400 --~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~  477 (507)
                        +.+++.++|+|+.+++++++.+++++|.++|+.++|||.+++.|+++.+...+..+...++.++.+... +..+++++
T Consensus       400 ~~~~~ai~vtRkr~~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL  478 (625)
T KOG1707|consen  400 GSQASAIRVTRKRKLDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLIL  478 (625)
T ss_pred             cccccceehhhhhhhhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEE
Confidence              899999999999999889999999999999999999999999999999988666788888999999988 66667776


Q ss_pred             ecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          478 QEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       478 Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      -.+|......+.+ .+  ..||+++++||.
T Consensus       479 ~ei~~~~~~~l~~-ke--~~cDv~~~~YDs  505 (625)
T KOG1707|consen  479 REIGEDDQDFLTS-KE--AACDVACLVYDS  505 (625)
T ss_pred             eecCccccccccC-cc--ceeeeEEEeccc
Confidence            6666543333332 23  789999999994

>COG1160 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=4.7e-37  Score=304.55  Aligned_cols=149  Identities=19%  Similarity=0.088  Sum_probs=120.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccch---------hhhHHhh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENK---------GKLNEEL   80 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~   80 (507)
                      ..|+|||+||||||||||||++.+  .+++...+++|.   .....+.+..|.++||+|.+...         .+...++
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r--~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCe--eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            579999999999999999999999  778888888884   34444678889999999987433         1334688


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      .+||++|||+|...+.+..+..  +.+.+++.  ++|+|+|+||+|....     .....+.+...++   .++++||.|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~--ia~~Lr~~--~kpviLvvNK~D~~~~-----e~~~~efyslG~g---~~~~ISA~H  149 (444)
T COG1160          82 EEADVILFVVDGREGITPADEE--IAKILRRS--KKPVILVVNKIDNLKA-----EELAYEFYSLGFG---EPVPISAEH  149 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEEcccCchh-----hhhHHHHHhcCCC---CceEeehhh
Confidence            9999999999999887776644  88888855  7999999999997632     3345566667776   479999999


Q ss_pred             CCCchHHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKAV  175 (507)
Q Consensus       161 g~gi~~l~~~i~~~i  175 (507)
                      |.|+.+|++.+.+.+
T Consensus       150 g~Gi~dLld~v~~~l  164 (444)
T COG1160         150 GRGIGDLLDAVLELL  164 (444)
T ss_pred             ccCHHHHHHHHHhhc
Confidence            999999999987754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=2.1e-32  Score=287.10  Aligned_cols=151  Identities=21%  Similarity=0.117  Sum_probs=109.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc--------chhhhHHh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEE   79 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~   79 (507)
                      ...+|+|+|++|||||||+|+|++..+.  .....+++|   ....+...+..+.+|||||++.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~--~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREA--VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcc--cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            3479999999999999999999987642  222233333   2223334567899999999763        22334567


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++.||++|+|||++++.++...  .|...+++.  ++|+++|+||+|+.....     +....+...++   .+++|||+
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~~~-----~~~~~~~~g~~---~~~~iSA~  182 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERGEA-----DAAALWSLGLG---EPHPVSAL  182 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCccch-----hhHHHHhcCCC---CeEEEEcC
Confidence            8999999999999998776543  377777765  799999999999864311     12223333443   35799999


Q ss_pred             cCCCchHHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKAV  175 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i  175 (507)
                      +|.|++++++.|.+.+
T Consensus       183 ~g~gi~eL~~~i~~~l  198 (472)
T PRK03003        183 HGRGVGDLLDAVLAAL  198 (472)
T ss_pred             CCCCcHHHHHHHHhhc
Confidence            9999999999987653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.97  E-value=1.1e-30  Score=272.56  Aligned_cols=147  Identities=16%  Similarity=0.114  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc--------chhhhHHhhcc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELKR   82 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~~   82 (507)
                      +|+|+|++|||||||+|+|++...  ......+++|.   ...+.+.+..+.+|||||...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~--~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRD--AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCc--ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998773  22223333332   223345677899999999742        33345568899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +|++++|+|++++.+..+..  +...+++.  ++|+++|+||+|+......     ...  ...++. .+++++||++|.
T Consensus        79 ad~vl~vvD~~~~~~~~d~~--i~~~l~~~--~~piilVvNK~D~~~~~~~-----~~~--~~~lg~-~~~~~vSa~~g~  146 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEE--IAKWLRKS--GKPVILVANKIDGKKEDAV-----AAE--FYSLGF-GEPIPISAEHGR  146 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHH--HHHHHHHh--CCCEEEEEECccCCccccc-----HHH--HHhcCC-CCeEEEeCCcCC
Confidence            99999999999876655533  66677766  7999999999998754322     111  123332 268999999999


Q ss_pred             CchHHHHHHHHH
Q 010548          163 QVPDVFYYAQKA  174 (507)
Q Consensus       163 gi~~l~~~i~~~  174 (507)
                      |+.++++.+.+.
T Consensus       147 gv~~ll~~i~~~  158 (429)
T TIGR03594       147 GIGDLLDAILEL  158 (429)
T ss_pred             ChHHHHHHHHHh
Confidence            999999987654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.97  E-value=1.2e-29  Score=265.18  Aligned_cols=147  Identities=15%  Similarity=0.066  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc--------chhhhHHhhc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE--------NKGKLNEELK   81 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~   81 (507)
                      .+|+|+|++|||||||+|+|++...  ......+++|.   .......+..+.+|||||+..        .......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~--~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRD--AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998773  22222233331   122334568899999999876        2223446789


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      .+|++|+|+|++++.+..+..  +...+++.  ++|+++|+||+|+.....     .....  ..++. ..++++||++|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~~~--~~piilv~NK~D~~~~~~-----~~~~~--~~lg~-~~~~~iSa~~g  147 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEE--IAKILRKS--NKPVILVVNKVDGPDEEA-----DAYEF--YSLGL-GEPYPISAEHG  147 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCccchh-----hHHHH--HhcCC-CCCEEEEeeCC
Confidence            999999999999875554432  45556665  799999999999754211     11111  22332 24799999999


Q ss_pred             CCchHHHHHHHH
Q 010548          162 IQVPDVFYYAQK  173 (507)
Q Consensus       162 ~gi~~l~~~i~~  173 (507)
                      .|++++++.+.+
T Consensus       148 ~gv~~l~~~I~~  159 (435)
T PRK00093        148 RGIGDLLDAILE  159 (435)
T ss_pred             CCHHHHHHHHHh
Confidence            999999998865

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.97  E-value=1.3e-29  Score=277.86  Aligned_cols=150  Identities=19%  Similarity=0.098  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc--------chhhhHHhh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE--------NKGKLNEEL   80 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~   80 (507)
                      ..+|+|+|++|||||||+|+|++...  ......+++|   ......+.+..+.+|||||...        +......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~--~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRRE--AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            46899999999999999999998763  3333344454   2223334567899999999763        223344678


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      +.+|++|+|+|++++.+..+  ..|...++..  ++|+|+|+||+|+....     ......+...++   ..++|||++
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-----~~~~~~~~lg~~---~~~~iSA~~  420 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-----YDAAEFWKLGLG---EPYPISAMH  420 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-----hhHHHHHHcCCC---CeEEEECCC
Confidence            99999999999987644333  3477778765  89999999999986431     122223333333   468999999


Q ss_pred             CCCchHHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKAV  175 (507)
Q Consensus       161 g~gi~~l~~~i~~~i  175 (507)
                      |.||++++++|.+.+
T Consensus       421 g~GI~eLl~~i~~~l  435 (712)
T PRK09518        421 GRGVGDLLDEALDSL  435 (712)
T ss_pred             CCCchHHHHHHHHhc
Confidence            999999999987653

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.8e-29  Score=222.14  Aligned_cols=168  Identities=18%  Similarity=0.287  Sum_probs=145.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      .....+||+|+|++|||||+|+.||..+.|.+.+.+++.- ++ ....++.+.++++||||+|+++|+.....||++|++
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            3556799999999999999999999999998886654432 22 555667788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      ||+|||+++.+||..+.. |+.+++++.. ++|.++||||||+.+.+.+  ..++...++..++.. .++|+|||++.||
T Consensus        85 ii~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v--~~~~a~~fa~~~~~~-~f~ETSAK~~~NV  160 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEKRVV--STEEAQEFADELGIP-IFLETSAKDSTNV  160 (205)
T ss_pred             EEEEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhheec--CHHHHHHHHHhcCCc-ceeecccCCccCH
Confidence            999999999999999997 9999999864 6799999999999998887  455678888888763 3999999999999


Q ss_pred             hHHHHHHHHHHcCCC
Q 010548          165 PDVFYYAQKAVLHPT  179 (507)
Q Consensus       165 ~~l~~~i~~~i~~~~  179 (507)
                      ++.|..|...+....
T Consensus       161 e~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  161 EDAFLTLAKELKQRK  175 (205)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999988775443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.3e-29  Score=220.53  Aligned_cols=165  Identities=21%  Similarity=0.271  Sum_probs=142.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+++|+.+||||||+-|+..+.|.+...+++..  .|....++...+++.||||+|+++|.++.+.|+++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35689999999999999999999999998875554432  3355566667899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||+++.+||..++. |..++++.. +++-+.|||||+||...+.+  ..++...++...+.  .|+|+|||+|.||++
T Consensus        83 vvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~R~V--~~~ea~~yAe~~gl--l~~ETSAKTg~Nv~~  157 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLERREV--EFEEAQAYAESQGL--LFFETSAKTGENVNE  157 (200)
T ss_pred             EEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhcccc--cHHHHHHHHHhcCC--EEEEEecccccCHHH
Confidence            9999999999999997 999999875 35667789999999998877  45667888888876  699999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 010548          167 VFYYAQKAVLHPT  179 (507)
Q Consensus       167 l~~~i~~~i~~~~  179 (507)
                      +|..|.+.+....
T Consensus       158 if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  158 IFQAIAEKLPCSD  170 (200)
T ss_pred             HHHHHHHhccCcc
Confidence            9999999886554

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.6e-29  Score=221.66  Aligned_cols=173  Identities=16%  Similarity=0.271  Sum_probs=151.2

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHH
Q 010548            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (507)
Q Consensus         1 m~~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (507)
                      +++|+.+.....+||+++|++|||||+|+.|+..+.|...+.++.. +.. ..+..+...+.+++|||+|++++..+...
T Consensus         1 ~~~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~s   80 (207)
T KOG0078|consen    1 LSAMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTA   80 (207)
T ss_pred             CCccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHH
Confidence            4678877788899999999999999999999999998777554222 111 33344567889999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      |+++|+++++|||+++..||+++.. |++.+.++.+ ++|++|||||+|+...+.+  ..+..+.++.++|.  +++|+|
T Consensus        81 YyrgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V--~~e~ge~lA~e~G~--~F~EtS  155 (207)
T KOG0078|consen   81 YYRGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQV--SKERGEALAREYGI--KFFETS  155 (207)
T ss_pred             HHhhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccc--cHHHHHHHHHHhCC--eEEEcc
Confidence            9999999999999999999999997 9999999865 8999999999999998877  56778999999986  799999


Q ss_pred             cccCCCchHHHHHHHHHHcCC
Q 010548          158 ATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~~  178 (507)
                      |++|.||.+.|..|++.++.+
T Consensus       156 Ak~~~NI~eaF~~La~~i~~k  176 (207)
T KOG0078|consen  156 AKTNFNIEEAFLSLARDILQK  176 (207)
T ss_pred             ccCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999988753

>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins

Probab=99.96  E-value=1.6e-29  Score=196.50  Aligned_cols=89  Identities=63%  Similarity=1.017  Sum_probs=85.3

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCC
Q 010548          227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ  306 (507)
Q Consensus       227 ~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~  306 (507)
                      +.+++++++++++++|++.+|+|++++|||++||++|+++|+++||+||+|+|||+|||+|+|+|.++|++..++++|+|
T Consensus         1 n~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p~l~v~~~~   80 (89)
T PF08356_consen    1 NKPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYPKLDVPPDQ   80 (89)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCCCccCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999993389999999


Q ss_pred             ceecCHhHH
Q 010548          307 SVELASEAV  315 (507)
Q Consensus       307 ~~~~s~~~~  315 (507)
                      ++|||+.|+
T Consensus        81 svELS~~gy   89 (89)
T PF08356_consen   81 SVELSPEGY   89 (89)
T ss_pred             eeecCcCcC
Confidence            999999984

It is found in all three eukaryotic kingdoms.

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=5.9e-28  Score=220.16  Aligned_cols=164  Identities=26%  Similarity=0.404  Sum_probs=136.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||+.+++.+.|...+.++.. .......++...+++.+|||+|++++..+...+++.+|++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            6999999999999999999999999776555443 333334455567899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC---------ccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN---------ATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      ++++.||+.+...|++.+++..++.|++|||||+|+.+.+.         . ...++...+++.++. .+++||||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-v~~~~~~~~a~~~~~-~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP-ITTAQGEELRKQIGA-AAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC-CCHHHHHHHHHHcCC-CEEEECCCCccc
Confidence            99999999985459999987767899999999999966431         1 245567778877764 259999999999


Q ss_pred             CchHHHHHHHHHHcCC
Q 010548          163 QVPDVFYYAQKAVLHP  178 (507)
Q Consensus       163 gi~~l~~~i~~~i~~~  178 (507)
                      ||+++|+.+++.+..+
T Consensus       160 nV~~~F~~~~~~~~~~  175 (176)
T cd04133         160 NVKAVFDAAIKVVLQP  175 (176)
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999987554

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.3e-28  Score=213.93  Aligned_cols=166  Identities=18%  Similarity=0.233  Sum_probs=141.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..+.+||+++|+.+|||||||+|++.+.|...+..++.---  ..+.+....+++++|||+|+++|+.+++.|+++++++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            45569999999999999999999999999888876333211  2233446678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-C-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-I-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      |+|||+++..||++... |++.+++.. . ++-|+|||||.||.+++++  ..++.+..+++++.  .|+++||+.|.||
T Consensus        99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqv--s~eEg~~kAkel~a--~f~etsak~g~NV  173 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQV--SIEEGERKAKELNA--EFIETSAKAGENV  173 (221)
T ss_pred             EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhh--hHHHHHHHHHHhCc--EEEEecccCCCCH
Confidence            99999999999999986 999988764 3 4778899999999999887  45566688888886  6999999999999


Q ss_pred             hHHHHHHHHHHcCCC
Q 010548          165 PDVFYYAQKAVLHPT  179 (507)
Q Consensus       165 ~~l~~~i~~~i~~~~  179 (507)
                      .++|..|..++....
T Consensus       174 k~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  174 KQLFRRIAAALPGME  188 (221)
T ss_pred             HHHHHHHHHhccCcc
Confidence            999999888775543

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=6.6e-28  Score=221.16  Aligned_cols=164  Identities=26%  Similarity=0.378  Sum_probs=137.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ...+||+++|++|||||||+++++.+.|...+.++. ..++....++...+.+.+|||+|++++..+.+.+++++|++|+
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            346899999999999999999999999877755433 3334444556667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEe
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      |||++++.||+.+...|.+.+++..++.|++|||||+|+...            +.+  ..++...++++++.. +|+||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~~-~~~E~  159 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPV--SYDQGANMAKQIGAA-TYIEC  159 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCC--CHHHHHHHHHHcCCC-EEEEC
Confidence            999999999999855599999988788999999999999642            223  456688888888742 69999


Q ss_pred             CcccCCC-chHHHHHHHHHHc
Q 010548          157 SATTMIQ-VPDVFYYAQKAVL  176 (507)
Q Consensus       157 SA~~g~g-i~~l~~~i~~~i~  176 (507)
                      ||++|.| |+++|+.+++.++
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999988654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=99.95  E-value=1.6e-27  Score=220.86  Aligned_cols=168  Identities=26%  Similarity=0.398  Sum_probs=136.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ..+||+++|++|||||||+.++..+.|...+.++.. .+.....++...+.+.+|||+|++++..++..+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            458999999999999999999999998766544432 2333334556678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ||++++.||+.+...|...++...++.|++|||||+|+.+....          ....++...++++++.. ++++|||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~-~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV-KYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc-EEEEeCCC
Confidence            99999999999976698888776678999999999999754210          01334566777777632 69999999


Q ss_pred             cCCCchHHHHHHHHHHcCCC
Q 010548          160 TMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~~~  179 (507)
                      +|.||+++|+.+++.+..+.
T Consensus       161 ~g~~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             CCCCHHHHHHHHHHHHhccc
Confidence            99999999999999887654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=7.3e-28  Score=203.43  Aligned_cols=169  Identities=21%  Similarity=0.296  Sum_probs=143.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      +.....+||+++|.+|||||||+-+++.+.|....+.++. ++. ..+.++.+.+++.||||+|+++|+.+.+.|+++|.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            3455679999999999999999999999999777665222 222 34556678899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      ++|+|||++.+++|..+.. |++++.-++  +++-.++||||+|...++.+  ..++...++++++.  -++||||++.+
T Consensus        86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V--~reEG~kfAr~h~~--LFiE~SAkt~~  160 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVV--DREEGLKFARKHRC--LFIECSAKTRE  160 (209)
T ss_pred             eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccc--cHHHHHHHHHhhCc--EEEEcchhhhc
Confidence            9999999999999999965 999998875  45677899999998877776  56678888999986  49999999999


Q ss_pred             CchHHHHHHHHHHcCCCC
Q 010548          163 QVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       163 gi~~l~~~i~~~i~~~~~  180 (507)
                      ||...|+.++..+...+.
T Consensus       161 ~V~~~FeelveKIi~tp~  178 (209)
T KOG0080|consen  161 NVQCCFEELVEKIIETPS  178 (209)
T ss_pred             cHHHHHHHHHHHHhcCcc
Confidence            999999999999876543

>cd04131 Rnd Rnd subfamily

Probab=99.95  E-value=1.6e-27  Score=218.09  Aligned_cols=162  Identities=28%  Similarity=0.372  Sum_probs=134.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      ++||+++|++|||||||++++.++.|...+.++. ..+.....++...+.+.+|||+|++.+..+.+.+++.+|++|+||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            4799999999999999999999999877754433 333334455566789999999999999988999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      |++++.||+++...|.+.+++..++.|+++||||+|+...            +.+  ..++...++++++.. +|+||||
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v--~~~e~~~~a~~~~~~-~~~E~SA  157 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPV--SYEQGCAIAKQLGAE-IYLECSA  157 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCC--CHHHHHHHHHHhCCC-EEEECcc
Confidence            9999999999754599999988788999999999999642            223  455678888888742 6999999


Q ss_pred             ccCCC-chHHHHHHHHHHc
Q 010548          159 TTMIQ-VPDVFYYAQKAVL  176 (507)
Q Consensus       159 ~~g~g-i~~l~~~i~~~i~  176 (507)
                      ++|+| |+++|..+++..+
T Consensus       158 ~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         158 FTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCCcCHHHHHHHHHHHHh
Confidence            99995 9999999988654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=3.1e-27  Score=217.82  Aligned_cols=163  Identities=18%  Similarity=0.214  Sum_probs=136.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+++|++|||||||+.++..+.+...+.++.. .. +....++...+.+.+|||+|++.+..++..+++.+|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            3468999999999999999999999887665543221 11 122344555689999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|||++++.||+.+.. |++.+.+..++.|+||||||+|+...+.+  ..+++..+++..+.  ++++|||++|.||+++
T Consensus        84 lVfD~t~~~Sf~~~~~-w~~~i~~~~~~~piilVGNK~DL~~~~~v--~~~~~~~~a~~~~~--~~~e~SAk~g~~V~~~  158 (189)
T cd04121          84 LVYDITNRWSFDGIDR-WIKEIDEHAPGVPKILVGNRLHLAFKRQV--ATEQAQAYAERNGM--TFFEVSPLCNFNITES  158 (189)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccchhccCC--CHHHHHHHHHHcCC--EEEEecCCCCCCHHHH
Confidence            9999999999999975 99999887778999999999999876665  35567788877763  7999999999999999


Q ss_pred             HHHHHHHHcC
Q 010548          168 FYYAQKAVLH  177 (507)
Q Consensus       168 ~~~i~~~i~~  177 (507)
                      |++|++.+..
T Consensus       159 F~~l~~~i~~  168 (189)
T cd04121         159 FTELARIVLM  168 (189)
T ss_pred             HHHHHHHHHH
Confidence            9999987753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.95  E-value=4.3e-27  Score=222.63  Aligned_cols=167  Identities=25%  Similarity=0.304  Sum_probs=139.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ....+||+++|++|||||||+++|+.+.|...+.++ ...++....+....+.+.||||+|++.+..+...++++||++|
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            345789999999999999999999999987775443 3444444555667889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEE
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      +|||++++.||+.+...|+..+++..++.|+||||||+|+...            +.+  ..++...++++++.. .|++
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~V--s~~e~~~~a~~~~~~-~~~E  166 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPI--SYEQGCALAKQLGAE-VYLE  166 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcC--CHHHHHHHHHHcCCC-EEEE
Confidence            9999999999998644599999887778999999999999642            233  445678889888742 5899


Q ss_pred             eCcccCC-CchHHHHHHHHHHcCC
Q 010548          156 CSATTMI-QVPDVFYYAQKAVLHP  178 (507)
Q Consensus       156 ~SA~~g~-gi~~l~~~i~~~i~~~  178 (507)
                      |||++|. ||+++|+.+++.++..
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHh
Confidence            9999998 8999999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-27  Score=206.50  Aligned_cols=163  Identities=19%  Similarity=0.257  Sum_probs=141.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+|++++|+.|||||+|+.|++.+.|.+....+..---  ....++.+.++++||||+|++.+.+....||+.|.++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            4568999999999999999999999999777654221111  22345577899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||+++++||..+.. |+..+++.. +|..++|+|||+||...+.+  ..++.+.++++.+-  .++++||++++||+|
T Consensus        84 LVydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~rR~V--s~EEGeaFA~ehgL--ifmETSakt~~~VEE  158 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEARREV--SKEEGEAFAREHGL--IFMETSAKTAENVEE  158 (216)
T ss_pred             EEEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhccccc--cHHHHHHHHHHcCc--eeehhhhhhhhhHHH
Confidence            9999999999999997 999999884 78999999999999998877  67789999999886  488999999999999


Q ss_pred             HHHHHHHHHcC
Q 010548          167 VFYYAQKAVLH  177 (507)
Q Consensus       167 l~~~i~~~i~~  177 (507)
                      .|......+..
T Consensus       159 aF~nta~~Iy~  169 (216)
T KOG0098|consen  159 AFINTAKEIYR  169 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99988776643

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.95  E-value=4.2e-27  Score=214.97  Aligned_cols=161  Identities=22%  Similarity=0.356  Sum_probs=131.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||++++..+.|...+.++. ..+.....+....+.+.+|||+|++++...+..+++.+|++|+|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            799999999999999999999999876654443 2333333444556889999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC-----------ccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      ++++.|++.+...|...++...+++|+|+|+||+|+.....           . ...++...++++++. ..+++|||++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~-v~~~~~~~~a~~~~~-~~~~e~SA~t  159 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP-ITPETGEKLARDLKA-VKYVECSALT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCC-cCHHHHHHHHHHhCC-cEEEEecCCC
Confidence            99999999997669999987767899999999999865411           1 233455667766653 2699999999


Q ss_pred             CCCchHHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKAV  175 (507)
Q Consensus       161 g~gi~~l~~~i~~~i  175 (507)
                      |.|++++|+.+++++
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04120 Rab12 Rab12 subfamily

Probab=99.95  E-value=1.1e-26  Score=216.23  Aligned_cols=161  Identities=19%  Similarity=0.342  Sum_probs=132.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +.|+++|+.|||||||++++..+.|...+.++.. ++. ....+....+.+.+|||+|++.+..++..++++||++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3699999999999999999999998777655433 221 23444555689999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.||+.+.. |+..+++.. .+.|+++||||+|+...+.+  .......++++.... .+++|||++|.||+++|+
T Consensus        81 Dvtd~~Sf~~l~~-w~~~i~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~a~~~~~~-~~~etSAktg~gV~e~F~  156 (202)
T cd04120          81 DITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETDREI--SRQQGEKFAQQITGM-RFCEASAKDNFNVDEIFL  156 (202)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCCC-EEEEecCCCCCCHHHHHH
Confidence            9999999999986 999887754 47999999999999876655  344456666665322 699999999999999999


Q ss_pred             HHHHHHcC
Q 010548          170 YAQKAVLH  177 (507)
Q Consensus       170 ~i~~~i~~  177 (507)
                      ++++.+..
T Consensus       157 ~l~~~~~~  164 (202)
T cd04120         157 KLVDDILK  164 (202)
T ss_pred             HHHHHHHH
Confidence            99987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=205.15  Aligned_cols=173  Identities=21%  Similarity=0.272  Sum_probs=142.6

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (507)
                      |+.......+||+|+|++|||||||+|++++++|...+..++.  -.|....++..-+.++||||+|+++|.++--.+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            3443445679999999999999999999999999777554332  22344555666789999999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhc-C----CCCcEEEEEecccCCCCC-CccchhhhhHHHHHHhcccCcEEE
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRL-E----IKVPIIVAGCKLDLRGDH-NATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~-~----~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      +||++++|||++++.||+.+.. |.+++-.. .    ..-|+||+|||+|+.... .+ .....+..++...+.+ ||||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~-VS~~~Aq~WC~s~gni-pyfE  157 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ-VSEKKAQTWCKSKGNI-PYFE  157 (210)
T ss_pred             CCceEEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccce-eeHHHHHHHHHhcCCc-eeEE
Confidence            9999999999999999999997 98875443 2    257999999999998742 23 3667788999999877 8999


Q ss_pred             eCcccCCCchHHHHHHHHHHcCCC
Q 010548          156 CSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      +|||...||.+.|+.+.+.++..+
T Consensus       158 tSAK~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  158 TSAKEATNVDEAFEEIARRALANE  181 (210)
T ss_pred             ecccccccHHHHHHHHHHHHHhcc
Confidence            999999999999999999886554

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=1.7e-26  Score=217.43  Aligned_cols=169  Identities=26%  Similarity=0.368  Sum_probs=139.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+|||++|||||||+++|+.+.|...+.+ ....+.....++...+.+.+|||+|++.+..+.+.+++.+|++|+||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            37999999999999999999999998777544 44444444556667789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC----------ccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      |+++++||+.+...|...++...++.|+||||||+|+..+..          .....+....+++.++.. +|+||||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~-~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV-SYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC-EEEEcCCCc
Confidence            999999999997779988888778999999999999965311          002345677788888743 799999999


Q ss_pred             CCC-chHHHHHHHHHHcCCCCC
Q 010548          161 MIQ-VPDVFYYAQKAVLHPTAP  181 (507)
Q Consensus       161 g~g-i~~l~~~i~~~i~~~~~~  181 (507)
                      +.| |+++|+.++.+++.+..+
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC
Confidence            985 999999999987765444

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=2.2e-26  Score=208.47  Aligned_cols=165  Identities=53%  Similarity=0.908  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +||+++|++|||||||+++|.++.+...+++..+.++....+....+++.+|||+|.+.+...+..+++.+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            48999999999999999999999987666666666666666667789999999999988877778888999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~  172 (507)
                      +++.+++.+...|.+.++....++|+++|+||+|+.+.......++....++..+....++++|||++|.|++++|+.+.
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~  160 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQ  160 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence            99999999876699988876668999999999999765432112334445555565444799999999999999999999


Q ss_pred             HHHcC
Q 010548          173 KAVLH  177 (507)
Q Consensus       173 ~~i~~  177 (507)
                      +.++.
T Consensus       161 ~~~~~  165 (166)
T cd01893         161 KAVLH  165 (166)
T ss_pred             HHhcC
Confidence            88764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.94  E-value=2.2e-26  Score=209.70  Aligned_cols=162  Identities=17%  Similarity=0.306  Sum_probs=133.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+++|++|||||||++++.++.|...+.++.. .+.....+....+.+.+|||+|++++..++..+++.+|++|+||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            47999999999999999999999998766544433 33334455566788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.||+.+.. |...+.+.  .+++|+++|+||+|+...+.+  ..+....+++.++.  ++++|||++|.||+++|
T Consensus        82 d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~a~~~~~--~~~e~Sa~~~~~v~~~f  156 (172)
T cd04141          82 SVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQV--TTEEGRNLAREFNC--PFFETSAALRHYIDDAF  156 (172)
T ss_pred             ECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCcc--CHHHHHHHHHHhCC--EEEEEecCCCCCHHHHH
Confidence            9999999999986 87777653  347999999999999776555  33455677777763  79999999999999999


Q ss_pred             HHHHHHHcCC
Q 010548          169 YYAQKAVLHP  178 (507)
Q Consensus       169 ~~i~~~i~~~  178 (507)
                      ++|.+.+...
T Consensus       157 ~~l~~~~~~~  166 (172)
T cd04141         157 HGLVREIRRK  166 (172)
T ss_pred             HHHHHHHHHh
Confidence            9999877643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.94  E-value=2.6e-26  Score=209.51  Aligned_cols=160  Identities=24%  Similarity=0.343  Sum_probs=131.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||+.+++.+.|...+.++.. .......++...+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            7999999999999999999999988776544333 222333455556889999999999999888999999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC-----------ccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----------ATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      ++++.||+.+...|...++...++.|+++|+||+|+.....           . ...++...++++++.. ++++|||++
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~-~~~e~Sa~~  159 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP-ITYPQGLAMAKEIGAV-KYLECSALT  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCC-CCHHHHHHHHHHcCCc-EEEEecccc
Confidence            99999999997669888877767899999999999965321           1 2345566778777643 789999999


Q ss_pred             CCCchHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKA  174 (507)
Q Consensus       161 g~gi~~l~~~i~~~  174 (507)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=6e-27  Score=195.11  Aligned_cols=162  Identities=23%  Similarity=0.277  Sum_probs=142.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..-+|.+|+|++|||||||+-++..+.|..++.++.. +.. .+.++.+..+++.||||+|++.|+.+...++++.++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            3457899999999999999999999999888665332 222 34555677899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|||+++.+||.+... |+++++..++..|-++||||+|.+..+.+  ..+.+..++.+.+.  .+||+|||.+.|++.+
T Consensus        86 vVYDVTn~ESF~Nv~r-WLeei~~ncdsv~~vLVGNK~d~~~RrvV--~t~dAr~~A~~mgi--e~FETSaKe~~NvE~m  160 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKR-WLEEIRNNCDSVPKVLVGNKNDDPERRVV--DTEDARAFALQMGI--ELFETSAKENENVEAM  160 (198)
T ss_pred             EEEECcchhhhHhHHH-HHHHHHhcCccccceecccCCCCccceee--ehHHHHHHHHhcCc--hheehhhhhcccchHH
Confidence            9999999999999996 99999999999999999999999887666  56778889998885  6999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |.-|.+.++
T Consensus       161 F~cit~qvl  169 (198)
T KOG0079|consen  161 FHCITKQVL  169 (198)
T ss_pred             HHHHHHHHH
Confidence            999988764

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=3.9e-26  Score=211.30  Aligned_cols=167  Identities=22%  Similarity=0.269  Sum_probs=132.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      .||+++|++|||||||+++|.++.|...+.++. ..+.....++...+.+.+|||+|++.+..+...+++.+|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            389999999999999999999998876644432 2322223344456889999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc----------chhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ++++.||+.+...|+..++...++.|+++|+||+|+.......          ...+....++...+. .+|++|||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA-LRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC-CEEEEccCCcC
Confidence            9999999998766999998877789999999999997653210          122334555555553 36999999999


Q ss_pred             CCchHHHHHHHHHHcCCCC
Q 010548          162 IQVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~~~~~  180 (507)
                      .||+++|++|++.+..+..
T Consensus       160 ~~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         160 RGVNEAFTEAARVALNVRP  178 (189)
T ss_pred             CCHHHHHHHHHHHHhcccc
Confidence            9999999999999876554

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=99.94  E-value=1e-25  Score=204.03  Aligned_cols=160  Identities=23%  Similarity=0.324  Sum_probs=130.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||++++.++.|...++++.. ... ....+....+.+.+|||||++.+......+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            37999999999999999999999988766554332 221 2234455568899999999999999899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||++++.+++.+.. |+..++... ++.|+++|+||+|+...+..  ..+....+++..+.  ++++|||++|.|++++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~e~f  156 (166)
T cd04122          82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQRDV--TYEEAKQFADENGL--LFLECSAKTGENVEDAF  156 (166)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCc--CHHHHHHHHHHcCC--EEEEEECCCCCCHHHHH
Confidence            99999999999986 888876653 47899999999999876555  33455666766653  79999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      ..+.+.+.
T Consensus       157 ~~l~~~~~  164 (166)
T cd04122         157 LETAKKIY  164 (166)
T ss_pred             HHHHHHHh
Confidence            99987653

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.94  E-value=2.6e-25  Score=210.29  Aligned_cols=162  Identities=18%  Similarity=0.283  Sum_probs=131.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+++|++|||||||+++++.+.+...+.++.....  .........+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            6789999999999999999999999888766555433222  22233445689999999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|||++++.|++.+.. |+..+++..++.|+++||||+|+... .+ . .+.. .+....+  .+|++|||++|.||+++
T Consensus        91 lvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~-~~~~-~~~~~~~--~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071         91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-QV-K-AKQV-TFHRKKN--LQYYEISAKSNYNFEKP  163 (219)
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc-cC-C-HHHH-HHHHhcC--CEEEEcCCCCCCCHHHH
Confidence            9999999999999986 99999887778999999999999643 22 1 2222 4444443  36999999999999999


Q ss_pred             HHHHHHHHcCC
Q 010548          168 FYYAQKAVLHP  178 (507)
Q Consensus       168 ~~~i~~~i~~~  178 (507)
                      |++|.+.+...
T Consensus       164 f~~l~~~~~~~  174 (219)
T PLN03071        164 FLYLARKLAGD  174 (219)
T ss_pred             HHHHHHHHHcC
Confidence            99999888643

>cd04136 Rap_like Rap-like subfamily

Probab=99.94  E-value=9.3e-26  Score=203.26  Aligned_cols=159  Identities=25%  Similarity=0.321  Sum_probs=128.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+++|++|||||||+++++.+.+...+.++... ......+....+.+.+|||||++++..++..+++.+|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            379999999999999999999998887665554332 2233344455678899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.+++.+.. |...+.+.  ..++|+++|+||+|+...+..  ..+....+++.++  .++++|||++|.|+.++|
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04136          81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVV--SREEGQALARQWG--CPFYETSAKSKINVDEVF  155 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--cHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence            9999999999886 88877654  247999999999999765444  3344556666666  379999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      ++|.+.+
T Consensus       156 ~~l~~~~  162 (163)
T cd04136         156 ADLVRQI  162 (163)
T ss_pred             HHHHHhc
Confidence            9998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=1e-25  Score=205.42  Aligned_cols=162  Identities=25%  Similarity=0.399  Sum_probs=130.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      |+|+|++|||||||++++.++.+...+.+.. ........++...+.+.+|||+|++.+..+...+++.+|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            6899999999999999999998866644332 222223344455678999999999999888889999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC----------ccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           94 QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      ++.|++.+...|+..+.+..+++|+++|+||+|+.....          .....++...+++.++.. ++++|||++|.|
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~e~Sa~~~~~  159 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV-KYLECSALTQEG  159 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCc-EEEEecCCCCCC
Confidence            999999997679999988777899999999999975321          001234456677777643 699999999999


Q ss_pred             chHHHHHHHHHHcC
Q 010548          164 VPDVFYYAQKAVLH  177 (507)
Q Consensus       164 i~~l~~~i~~~i~~  177 (507)
                      |+++|+.+.+.++.
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04175 Rap1 Rap1 subgroup

Probab=99.94  E-value=1.8e-25  Score=201.83  Aligned_cols=159  Identities=25%  Similarity=0.342  Sum_probs=128.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      ++||+++|++|||||||+++++.+.+...+.++... ......+....+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            379999999999999999999988876665544332 2233444455788899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.+++.+.. |...+.+.  ..+.|+++|+||+|+......  ..+....+++.++.  ++++|||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~  155 (164)
T cd04175          81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWGC--AFLETSAKAKINVNEIF  155 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEE--cHHHHHHHHHHhCC--EEEEeeCCCCCCHHHHH
Confidence            9999999999886 77776543  357999999999999775444  23345566666663  79999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      .++.+.+
T Consensus       156 ~~l~~~l  162 (164)
T cd04175         156 YDLVRQI  162 (164)
T ss_pred             HHHHHHh
Confidence            9998754

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04140 ARHI_like ARHI subfamily

Probab=99.93  E-value=2.2e-25  Score=201.68  Aligned_cols=156  Identities=22%  Similarity=0.269  Sum_probs=125.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||+++++++.|...+.++.+... .........+.+.+|||+|++.+..+...+++.+|++|+|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            7999999999999999999999988766555443322 223344556889999999999999888899999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ++++.+++.+.. |+..++...    +++|+++|+||+|+...+.+  .......++..++  .++++|||++|.|++++
T Consensus        82 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~SA~~g~~v~~~  156 (165)
T cd04140          82 VTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREV--SSNEGAACATEWN--CAFMETSAKTNHNVQEL  156 (165)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCee--cHHHHHHHHHHhC--CcEEEeecCCCCCHHHH
Confidence            999999999886 777776532    47999999999999765544  2333455555554  36999999999999999


Q ss_pred             HHHHHH
Q 010548          168 FYYAQK  173 (507)
Q Consensus       168 ~~~i~~  173 (507)
                      |++|.+
T Consensus       157 f~~l~~  162 (165)
T cd04140         157 FQELLN  162 (165)
T ss_pred             HHHHHh
Confidence            999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04126 Rab20 Rab20 subfamily

Probab=99.93  E-value=2.9e-25  Score=208.99  Aligned_cols=159  Identities=25%  Similarity=0.287  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +||+|+|.+|||||||+++|+.+.|....++......   ......+.+.+|||+|++.+..+...+++.+|++|+|||+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~---~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv   77 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFY---LKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV   77 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEE---EEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence            5899999999999999999999988643333222211   1123467899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC-------------------CCCccchhhhhHHHHHHhccc---
Q 010548           93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------------------DHNATSLEEVMGPIMQQFREI---  150 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~-------------------~~~~~~~~~~~~~~~~~~~~~---  150 (507)
                      +++.||+.+...|....+...++.|+|||+||+|+.+                   .+.+  ..++...++++++..   
T Consensus        78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v--~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV--TLEDAKAFYKRINKYKML  155 (220)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC--CHHHHHHHHHHhCccccc
Confidence            9999999998744444433345799999999999975                   2333  445677788777532   


Q ss_pred             ---------CcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          151 ---------ETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       151 ---------~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                               .+|+||||++|.||+++|..+++.++
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                     36999999999999999999998764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01865 Rab3 Rab3 subfamily

Probab=99.93  E-value=2.9e-25  Score=200.84  Aligned_cols=159  Identities=18%  Similarity=0.249  Sum_probs=128.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||++++.+..+...+.++... +. .........+.+.+|||+|++.+......+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999987665543321 11 11222344588999999999999888999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.+++.+.. |...+++.. .++|+++|+||+|+.+.+..  ..+....++..++.  +++++||++|.|++++|+
T Consensus        82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l~~  156 (165)
T cd01865          82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDERVV--SSERGRQLADQLGF--EFFEASAKENINVKQVFE  156 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcCC--EEEEEECCCCCCHHHHHH
Confidence            9999999999986 999887764 47899999999999776544  23445566666653  699999999999999999


Q ss_pred             HHHHHHc
Q 010548          170 YAQKAVL  176 (507)
Q Consensus       170 ~i~~~i~  176 (507)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (165)
T cd01865         157 RLVDIIC  163 (165)
T ss_pred             HHHHHHH
Confidence            9987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.93  E-value=3.4e-25  Score=200.81  Aligned_cols=160  Identities=17%  Similarity=0.284  Sum_probs=130.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||++++.+..|...+.++.....  ....+....+.+.+|||+|++.+......+++.+|++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            58999999999999999999999998777554333221  2233445567899999999998888888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||++++.+++.+.. |+..+.+.. .+.|+++|+||+|+.+.+..  ..+....++..++.  ++++|||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~  157 (167)
T cd01867          83 YDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYGI--KFLETSAKANINVEEAF  157 (167)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHH
Confidence            99999999999986 999887753 47899999999999865544  33445566666653  79999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      +++.+.+.
T Consensus       158 ~~i~~~~~  165 (167)
T cd01867         158 FTLAKDIK  165 (167)
T ss_pred             HHHHHHHH
Confidence            99998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=2.7e-25  Score=205.72  Aligned_cols=163  Identities=21%  Similarity=0.321  Sum_probs=131.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ..+||+++|++|||||||++++.++.+...+.++.. .+.....++...+.+.+|||+|++++..++..+++.+|++++|
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            458999999999999999999999888766544332 2223344556678899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ||++++.+++.+.. |...+.+..  .+.|+++|+||+|+...+.+  .......+++.++.  ++++|||++|.||.++
T Consensus        84 ~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i--~~~~~~~~~~~~~~--~~~e~Sak~~~gi~~~  158 (189)
T PTZ00369         84 YSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQV--STGEGQELAKSFGI--PFLETSAKQRVNVDEA  158 (189)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHhCC--EEEEeeCCCCCCHHHH
Confidence            99999999999986 888776542  47899999999999765544  23345556666653  7999999999999999


Q ss_pred             HHHHHHHHcCC
Q 010548          168 FYYAQKAVLHP  178 (507)
Q Consensus       168 ~~~i~~~i~~~  178 (507)
                      |++|.+.+...
T Consensus       159 ~~~l~~~l~~~  169 (189)
T PTZ00369        159 FYELVREIRKY  169 (189)
T ss_pred             HHHHHHHHHHH
Confidence            99999877543

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.93  E-value=2.7e-25  Score=199.43  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +||+++|++|||||||+.+++.+.|...+++....+.....++...+.+.+|||+|++.     ..+++.+|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence            58999999999999999999998887766554444444445555568899999999864     3567899999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCC--CCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      +++.||+.+.. |++.+....  ++.|+++||||+|+..  .+.+  ..++...++++.+. +.|++|||++|.||+++|
T Consensus        76 ~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v--~~~~~~~~~~~~~~-~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          76 ENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVI--DDARARQLCADMKR-CSYYETCATYGLNVERVF  151 (158)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCccc--CHHHHHHHHHHhCC-CcEEEEecCCCCCHHHHH
Confidence            99999999986 988887654  4789999999999854  2333  34455667766543 379999999999999999


Q ss_pred             HHHHHH
Q 010548          169 YYAQKA  174 (507)
Q Consensus       169 ~~i~~~  174 (507)
                      +.+.+.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            998764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=2.7e-25  Score=207.79  Aligned_cols=162  Identities=18%  Similarity=0.230  Sum_probs=130.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +||+|+|++|||||||+++|+++.+...+.++.. .+. ....+. ...+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999887666544332 111 223334 4578899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      ||++++.+++.+.. |...+...     ..++|+++|+||+|+...+..  ..+.+..+++..+. .++++|||++|.||
T Consensus        81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sak~~~~v  156 (201)
T cd04107          81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENGF-IGWFETSAKEGINI  156 (201)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcCC-ceEEEEeCCCCCCH
Confidence            99999999999975 88877643     247899999999999754443  34556777777762 37999999999999


Q ss_pred             hHHHHHHHHHHcCC
Q 010548          165 PDVFYYAQKAVLHP  178 (507)
Q Consensus       165 ~~l~~~i~~~i~~~  178 (507)
                      +++|++|.+.+...
T Consensus       157 ~e~f~~l~~~l~~~  170 (201)
T cd04107         157 EEAMRFLVKNILAN  170 (201)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.93  E-value=3.5e-25  Score=199.50  Aligned_cols=157  Identities=17%  Similarity=0.267  Sum_probs=128.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||+++++++.+...+.++.. ... ....+....+.+.+|||+|++.+..+...+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999988766444322 221 22344444678999999999999988999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.|++.+.. |+..++.... +.|+++|+||+|+...+.+  ..+....+++.++  +++++|||++|.||+++|+
T Consensus        81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQKRQV--GDEQGNKLAKEYG--MDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHH
Confidence            9999999999986 9998876543 6899999999999876655  3455667777666  3799999999999999999


Q ss_pred             HHHHH
Q 010548          170 YAQKA  174 (507)
Q Consensus       170 ~i~~~  174 (507)
                      +|.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.4e-25  Score=186.88  Aligned_cols=163  Identities=17%  Similarity=0.271  Sum_probs=138.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+|+.|+|+..||||||+.|+++..|..+...+.. .......+ ..+.+++++|||+|++.++.....++++|+++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            367999999999999999999999999887554222 22211111 2456899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |||++|.+||..++. |.-.|+..+ .+.|+|+|+||||+..++.+  ..+....++.++|.  .+||+|||.+.||.++
T Consensus       100 myDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~eRvi--s~e~g~~l~~~LGf--efFEtSaK~NinVk~~  174 (193)
T KOG0093|consen  100 MYDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSERVI--SHERGRQLADQLGF--EFFETSAKENINVKQV  174 (193)
T ss_pred             EEecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccceee--eHHHHHHHHHHhCh--HHhhhcccccccHHHH
Confidence            999999999999997 999998875 48999999999999988877  55678889999986  6999999999999999


Q ss_pred             HHHHHHHHcCC
Q 010548          168 FYYAQKAVLHP  178 (507)
Q Consensus       168 ~~~i~~~i~~~  178 (507)
                      |+.+...+...
T Consensus       175 Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  175 FERLVDIICDK  185 (193)
T ss_pred             HHHHHHHHHHH
Confidence            99998887554

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=3.5e-25  Score=203.18  Aligned_cols=161  Identities=17%  Similarity=0.247  Sum_probs=130.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCccc----------CCceEEEEEeCCCCccchhhhHH
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFY----------PDRVPVTIIDTSSSLENKGKLNE   78 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~   78 (507)
                      ..+||+++|++|||||||++++.++.+...+.++... .. ....+.          ...+.+.+|||+|++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            4589999999999999999999999887665443321 11 111111          34588999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      +++.+|++++|||++++.|+.++.. |+..+...  .++.|+++|+||+|+...+.+  ..+....+++.++.  +++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQV--SEEQAKALADKYGI--PYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCcc--CHHHHHHHHHHcCC--eEEEE
Confidence            9999999999999999999999986 99888764  347899999999999876555  33456777777763  79999


Q ss_pred             CcccCCCchHHHHHHHHHHc
Q 010548          157 SATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ||++|.|++++|+.|.+.+.
T Consensus       158 Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988664

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04176 Rap2 Rap2 subgroup

Probab=99.93  E-value=4.6e-25  Score=198.97  Aligned_cols=159  Identities=22%  Similarity=0.311  Sum_probs=127.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      ++||+++|++|||||||+++++.+.+...+.++.... .....+....+.+.+|||+|++++..++..+++.+|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            4799999999999999999999998877655543322 223344455678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.|++++.. |...+.+..  .++|+++|+||+|+.....+  .......++..++.  ++++|||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l~  155 (163)
T cd04176          81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREV--SSAEGRALAEEWGC--PFMETSAKSKTMVNELF  155 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCcc--CHHHHHHHHHHhCC--EEEEecCCCCCCHHHHH
Confidence            9999999999986 877776542  47999999999999765443  22335566666653  78999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      .++.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd04176         156 AEIVRQM  162 (163)
T ss_pred             HHHHHhc
Confidence            9998643

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04144 Ras2 Ras2 subfamily

Probab=99.93  E-value=3.4e-25  Score=205.25  Aligned_cols=160  Identities=22%  Similarity=0.346  Sum_probs=128.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      ||+++|.+|||||||+++|+.+.|...+.++... +.....+....+.+.+|||+|++++..+...+++.+|++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            6899999999999999999998887665554332 222233445567899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      +++.|++.+.. |+..+....    .++|+++|+||+|+...+.+  .......++..++.  +++++||++|.|++++|
T Consensus        81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREV--STEEGAALARRLGC--EFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHhCC--EEEEecCCCCCCHHHHH
Confidence            99999999986 887776532    47899999999999765554  23344566666663  69999999999999999


Q ss_pred             HHHHHHHcCC
Q 010548          169 YYAQKAVLHP  178 (507)
Q Consensus       169 ~~i~~~i~~~  178 (507)
                      +++.+.+...
T Consensus       156 ~~l~~~l~~~  165 (190)
T cd04144         156 YTLVRALRQQ  165 (190)
T ss_pred             HHHHHHHHHh
Confidence            9999877543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.93  E-value=5.4e-25  Score=198.26  Aligned_cols=157  Identities=22%  Similarity=0.279  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||+++++++.+.+...++... . .....+....+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998876654432211 1 122334456788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      |++++.+++++.. |+..+++..+++|+++|+||+|+...     .......+++..+  .+++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLSK-WYEELREYRPEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN--LPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEECccCchh-----HHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence            9999999999875 99999877678999999999998532     1222334444444  37899999999999999999


Q ss_pred             HHHHHcC
Q 010548          171 AQKAVLH  177 (507)
Q Consensus       171 i~~~i~~  177 (507)
                      +.+.+..
T Consensus       153 l~~~~~~  159 (161)
T cd04124         153 AIKLAVS  159 (161)
T ss_pred             HHHHHHh
Confidence            9887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.93  E-value=5.3e-25  Score=204.13  Aligned_cols=157  Identities=28%  Similarity=0.401  Sum_probs=122.7

Q ss_pred             ceEEEEEcCCCCCHHHHHH-HHhcCCC-----CCCCCCCCC---CeeeCC--------cccCCceEEEEEeCCCCccchh
Q 010548           12 GVRVVVVGDRGTGKSSLIA-AAATESV-----PEKVPPVHA---PTRLPP--------DFYPDRVPVTIIDTSSSLENKG   74 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin-~l~~~~~-----~~~~~~~~~---~~t~~~--------~~~~~~~~~~i~Dt~G~~~~~~   74 (507)
                      .+||+++|++|||||||+. ++.++.+     ...+.++..   .+....        .++...+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 6655443     333333331   121111        3455678999999999865  3


Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC-------------------CCccc
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-------------------HNATS  135 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~-------------------~~~~~  135 (507)
                      ....+++++|++|+|||++++.|++.+...|.+.++...++.|+++||||+|+...                   +.+  
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V--  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL--  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc--
Confidence            45568999999999999999999999976699999887678999999999999642                   333  


Q ss_pred             hhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          136 LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      ..++...++++++.  +|+||||++|.||+++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~--~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGI--PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCC--EEEEcCCCCCCCHHHHHHHHHHh
Confidence            45677888888874  79999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.93  E-value=7e-25  Score=198.42  Aligned_cols=160  Identities=18%  Similarity=0.284  Sum_probs=129.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||+++++++.+...+.++.. ... ....+....+.+.+|||||++.+......+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999887655433322 111 2233344567899999999999988889999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||+++++|+..+.. |+..+++.. ++.|+++|+||+|+.....+  ..+....++..++.  +++++||++|.|++++|
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~  156 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDKRVV--DYSEAQEFADELGI--PFLETSAKNATNVEQAF  156 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccccCC--CHHHHHHHHHHcCC--eEEEEECCCCcCHHHHH
Confidence            99999999999987 999887764 47899999999998765544  23445666666653  79999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      +.|.+.+.
T Consensus       157 ~~i~~~~~  164 (166)
T cd01869         157 MTMAREIK  164 (166)
T ss_pred             HHHHHHHH
Confidence            99988653

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.93  E-value=6.7e-25  Score=198.71  Aligned_cols=158  Identities=18%  Similarity=0.280  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||+++++.+.+...+.++.....  .........+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998887655544332221  22223345688999999999988888889999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      |++++.+++.+.. |...+.+...++|+++|+||+|+.... .  . .....+.+..+  .++++|||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~piiiv~nK~Dl~~~~-~--~-~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVPN-WHRDLVRVCGNIPIVLCGNKVDIKDRK-V--K-AKQITFHRKKN--LQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhccccc-C--C-HHHHHHHHHcC--CEEEEEeCCCCCChHHHHHH
Confidence            9999999999986 999998876689999999999997332 2  1 22233444332  36999999999999999999


Q ss_pred             HHHHHcC
Q 010548          171 AQKAVLH  177 (507)
Q Consensus       171 i~~~i~~  177 (507)
                      |.+.+..
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9988754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.93  E-value=7.1e-25  Score=198.22  Aligned_cols=159  Identities=23%  Similarity=0.272  Sum_probs=127.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||+++++++.+...+.++... . .....+....+.+++|||+|++.+..+...+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999887665443321 1 122344456789999999999988888889999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC------CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      |++++.+++.+.. |...+.+..      .+.|+++|+||+|+......  ..+....++...+  .+++++||++|.|+
T Consensus        81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG--FKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC--CeEEEEECCCCCCH
Confidence            9999999999876 988887653      36899999999999754333  3344555666665  36999999999999


Q ss_pred             hHHHHHHHHHHc
Q 010548          165 PDVFYYAQKAVL  176 (507)
Q Consensus       165 ~~l~~~i~~~i~  176 (507)
                      +++|+.|.+.++
T Consensus       156 ~~l~~~l~~~l~  167 (168)
T cd04119         156 NEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.93  E-value=8.9e-25  Score=197.05  Aligned_cols=159  Identities=18%  Similarity=0.280  Sum_probs=128.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+++|++|||||||++++++..+...+.++... .+....+....+.+.+|||||++++..++..+++.+|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            489999999999999999999998876665544332 2233344455678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.+++.+.. |...+.+.  ..+.|+++|+||+|+......  ..+....+++.++.  +++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~  156 (164)
T cd04145          82 SVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKV--SREEGQELARKLKI--PYIETSAKDRLNVDKAF  156 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccccee--cHHHHHHHHHHcCC--cEEEeeCCCCCCHHHHH
Confidence            9999999999986 77776653  347899999999999765544  23345566666653  79999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      +.|.+.+
T Consensus       157 ~~l~~~~  163 (164)
T cd04145         157 HDLVRVI  163 (164)
T ss_pred             HHHHHhh
Confidence            9998753

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.6e-25  Score=196.89  Aligned_cols=165  Identities=19%  Similarity=0.214  Sum_probs=142.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      ......+||+++|+++||||-|+.|+..+.|.....+++.  -.|....++.+.++.+||||+|+++|+.....|+++|.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            3456689999999999999999999999998766433222  23456677788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      ++++|||++.+.||+++.. |+.+++.+. +++++++||||+||...+.+  ..++...+++..+-  .++++||..+.|
T Consensus        89 GAllVYDITr~~Tfenv~r-WL~ELRdhad~nivimLvGNK~DL~~lraV--~te~~k~~Ae~~~l--~f~EtSAl~~tN  163 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVER-WLKELRDHADSNIVIMLVGNKSDLNHLRAV--PTEDGKAFAEKEGL--FFLETSALDATN  163 (222)
T ss_pred             eeEEEEechhHHHHHHHHH-HHHHHHhcCCCCeEEEEeecchhhhhcccc--chhhhHhHHHhcCc--eEEEeccccccc
Confidence            9999999999999999986 999999885 68999999999999987776  55667778877764  689999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      +++.|+.++..+.
T Consensus       164 Ve~aF~~~l~~I~  176 (222)
T KOG0087|consen  164 VEKAFERVLTEIY  176 (222)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887664

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.93  E-value=6.7e-25  Score=202.65  Aligned_cols=164  Identities=26%  Similarity=0.384  Sum_probs=131.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+|+|++|||||||+++|.++.+...+.++. ..+....... ...+.+.+|||+|++++......+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            589999999999999999999998876644432 2222222332 45678999999999999888889999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC---ccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN---ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |++++.|++.+...|+..+....+++|+++|+||+|+.....   . ........++..++.. ++++|||++|.||+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGAF-AYLECSAKTMENVEEV  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCCc-EEEEccCCCCCCHHHH
Confidence            999999999997669888877666899999999999965421   1 2344566677776642 6899999999999999


Q ss_pred             HHHHHHHHcCC
Q 010548          168 FYYAQKAVLHP  178 (507)
Q Consensus       168 ~~~i~~~i~~~  178 (507)
                      |+.+.+.+...
T Consensus       159 f~~l~~~~~~~  169 (187)
T cd04132         159 FDTAIEEALKK  169 (187)
T ss_pred             HHHHHHHHHhh
Confidence            99999887644

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.93  E-value=9.9e-25  Score=196.03  Aligned_cols=158  Identities=20%  Similarity=0.326  Sum_probs=125.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+++|++|||||||+++|+++.+...+.++... ......+....+.+.+|||+|++++..++..+++.+|++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            379999999999999999999998886665544332 2233344455677899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.+++.+.. |...+.+.  ..++|+++|+||+|+... ..  .......+++.++.  +++++||++|.|++++|
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~  154 (162)
T cd04138          81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-TV--SSRQGQDLAKSYGI--PYIETSAKTRQGVEEAF  154 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-ee--cHHHHHHHHHHhCC--eEEEecCCCCCCHHHHH
Confidence            9999999999876 77776654  247899999999999763 22  23445556666653  69999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04138         155 YTLVREI  161 (162)
T ss_pred             HHHHHHh
Confidence            9998653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04128 Spg1 Spg1p

Probab=99.93  E-value=7.4e-25  Score=201.27  Aligned_cols=161  Identities=19%  Similarity=0.284  Sum_probs=127.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||+++++++.|...+.++.. ... ....+....+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999998776555443 221 23344455688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCC---ccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHN---ATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |++++.|++++.. |+..+++..+ ..| |+||||+|+.....   .....+....+++.++  .++++|||++|.|+++
T Consensus        81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~~  156 (182)
T cd04128          81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--APLIFCSTSHSINVQK  156 (182)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC--CEEEEEeCCCCCCHHH
Confidence            9999999999986 9998877543 456 68999999963211   0012344556676666  3799999999999999


Q ss_pred             HHHHHHHHHcC
Q 010548          167 VFYYAQKAVLH  177 (507)
Q Consensus       167 l~~~i~~~i~~  177 (507)
                      +|+++.+.+..
T Consensus       157 lf~~l~~~l~~  167 (182)
T cd04128         157 IFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHHh
Confidence            99999987753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.93  E-value=9.7e-25  Score=196.95  Aligned_cols=158  Identities=20%  Similarity=0.337  Sum_probs=127.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+|+|++|||||||++++++..+...+.++... ......+....+.+.+|||||++++..++..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999998887665443332 22333444556889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ++++.+++.+.. |...+.+.  ..++|+++|+||+|+...+..  ..+....+++.++  .++++|||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVV--STEEGKELARQWG--CPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceE--cHHHHHHHHHHcC--CEEEEeecCCCCCHHHHHH
Confidence            999999999886 77766543  236899999999999765444  3344556666665  3799999999999999999


Q ss_pred             HHHHHH
Q 010548          170 YAQKAV  175 (507)
Q Consensus       170 ~i~~~i  175 (507)
                      +|.+.+
T Consensus       156 ~l~~~~  161 (164)
T smart00173      156 DLVREI  161 (164)
T ss_pred             HHHHHH
Confidence            998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.93  E-value=1e-24  Score=198.34  Aligned_cols=160  Identities=17%  Similarity=0.237  Sum_probs=127.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      ||+++|++|||||||+++++++.|...+.++.. .+. ....+....+.+++|||+|++++..+...+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            899999999999999999999998777655433 221 223344556789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhc-CC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRL-EI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~-~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ++++.++..+.. |++.+.+. .+ +.|+++|+||+|+.........++....++.+++.  +++++||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~g~~v~~lf~  158 (170)
T cd04108          82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA--EYWSVSALSGENVREFFF  158 (170)
T ss_pred             CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC--eEEEEECCCCCCHHHHHH
Confidence            999999999986 99887553 22 47899999999996553321234455666676663  689999999999999999


Q ss_pred             HHHHHHc
Q 010548          170 YAQKAVL  176 (507)
Q Consensus       170 ~i~~~i~  176 (507)
                      .|.+.+.
T Consensus       159 ~l~~~~~  165 (170)
T cd04108         159 RVAALTF  165 (170)
T ss_pred             HHHHHHH
Confidence            9988763

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.93  E-value=9e-25  Score=196.68  Aligned_cols=157  Identities=17%  Similarity=0.263  Sum_probs=127.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc--CCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      +||+++|++|||||||+++++++.+...+.++.....  ....+.  ...+.+.+|||||++.+......+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999887665443222111  112222  456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |||++++++++.+.. |...+.....++|+++|+||+|+.....+  ..++...+++.++.  +++++||++|.|++++|
T Consensus        81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l~  155 (162)
T cd04106          81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQAVI--TNEEAEALAKRLQL--PLFRTSVKDDFNVTELF  155 (162)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccccCC--CHHHHHHHHHHcCC--eEEEEECCCCCCHHHHH
Confidence            999999999999886 99888877778999999999999776554  23455666777663  79999999999999999


Q ss_pred             HHHHHH
Q 010548          169 YYAQKA  174 (507)
Q Consensus       169 ~~i~~~  174 (507)
                      ++|...
T Consensus       156 ~~l~~~  161 (162)
T cd04106         156 EYLAEK  161 (162)
T ss_pred             HHHHHh
Confidence            998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04110 Rab35 Rab35 subfamily

Probab=99.93  E-value=1.4e-24  Score=202.50  Aligned_cols=163  Identities=20%  Similarity=0.249  Sum_probs=132.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+|+|++|||||||+++|.+..+...+.++.. .+. ....+....+.+.+|||||++.+..+...+++.+|++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            468999999999999999999999887655444322 111 222333456789999999999999899999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |||++++.+++.+.. |+..++......|+++|+||+|+......  ..+....++..++  .+++++||++|.||+++|
T Consensus        85 v~D~~~~~s~~~~~~-~~~~i~~~~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110          85 VYDVTNGESFVNVKR-WLQEIEQNCDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG--ISLFETSAKENINVEEMF  159 (199)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence            999999999999986 99998887778999999999999765444  3344556666665  379999999999999999


Q ss_pred             HHHHHHHcCC
Q 010548          169 YYAQKAVLHP  178 (507)
Q Consensus       169 ~~i~~~i~~~  178 (507)
                      ++|.+.++..
T Consensus       160 ~~l~~~~~~~  169 (199)
T cd04110         160 NCITELVLRA  169 (199)
T ss_pred             HHHHHHHHHh
Confidence            9999988643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04135 Tc10 TC10 subfamily

Probab=99.93  E-value=1.1e-24  Score=198.71  Aligned_cols=162  Identities=23%  Similarity=0.354  Sum_probs=129.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||++++.++.+...+.++.. .......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            5899999999999999999999988665444332 222333444556788999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ++++.+++.+...|.+.++...+++|+++|+||+|+.+....          ....+....+++.++.. ++++|||++|
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~e~Sa~~~  159 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH-CYVECSALTQ  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC-EEEEecCCcC
Confidence            999999999977799988876678999999999998654210          01234456677777643 6999999999


Q ss_pred             CCchHHHHHHHHHH
Q 010548          162 IQVPDVFYYAQKAV  175 (507)
Q Consensus       162 ~gi~~l~~~i~~~i  175 (507)
                      .|++++|+.+++.+
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01864 Rab19 Rab19 subfamily

Probab=99.92  E-value=1.8e-24  Score=195.63  Aligned_cols=160  Identities=17%  Similarity=0.276  Sum_probs=127.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+++|++|||||||++++..+.+...+.++... . .....+....+.+.+|||||++.+......+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            3589999999999999999999988876654443321 1 1223334445789999999999888888999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |||++++.+++.+.. |+..+.... .++|+++|+||+|+...+..  ..+....+++.++. ..++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  157 (165)
T cd01864          82 AYDITRRSSFESVPH-WIEEVEKYGASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKNGM-LAVLETSAKESQNVEEA  157 (165)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC-cEEEEEECCCCCCHHHH
Confidence            999999999999876 988887643 47999999999999866544  33445666666654 36899999999999999


Q ss_pred             HHHHHHH
Q 010548          168 FYYAQKA  174 (507)
Q Consensus       168 ~~~i~~~  174 (507)
                      |+.+.+.
T Consensus       158 ~~~l~~~  164 (165)
T cd01864         158 FLLMATE  164 (165)
T ss_pred             HHHHHHh
Confidence            9998764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04109 Rab28 Rab28 subfamily

Probab=99.92  E-value=1.5e-24  Score=204.85  Aligned_cols=161  Identities=20%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccC-CceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +||+++|++|||||||+++|++..|...+.++.. .. .....+.. ..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999888766554332 21 12223322 368999999999998899999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.|++.+.. |...+.+..    .+.|+++|+||+|+...+.+  ..+....+++.++.  ++++|||++|.||+
T Consensus        81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~~~--~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQANGM--ESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEECCCCCCHH
Confidence            99999999999986 999887753    24689999999999765554  34456677777763  68999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 010548          166 DVFYYAQKAVLHP  178 (507)
Q Consensus       166 ~l~~~i~~~i~~~  178 (507)
                      ++|++|.+.+...
T Consensus       156 ~lf~~l~~~l~~~  168 (215)
T cd04109         156 LLFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01868 Rab11_like Rab11-like

Probab=99.92  E-value=2.2e-24  Score=194.88  Aligned_cols=159  Identities=20%  Similarity=0.260  Sum_probs=127.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||++++.++.+.....++.. .. +....+....+.+.+|||||++.+..+...+++.++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999887655433222 21 22333444557899999999998888899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||++++.++..+.. |+..++.... ++|+++|+||+|+...+..  ..+....++...+  .++++|||++|.|++++|
T Consensus        83 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  157 (165)
T cd01868          83 YDITKKQTFENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAEKNG--LSFIETSALDGTNVEEAF  157 (165)
T ss_pred             EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            99999999999986 9988877654 5999999999999775544  2334555555544  369999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      +.|.+.+
T Consensus       158 ~~l~~~i  164 (165)
T cd01868         158 KQLLTEI  164 (165)
T ss_pred             HHHHHHh
Confidence            9998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.92  E-value=9.7e-25  Score=196.55  Aligned_cols=158  Identities=25%  Similarity=0.389  Sum_probs=135.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      ||+++|+++||||||+++|.++.|...+.++..  .......+....+.+.+||++|++.+..+....++.+|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999999999999998777655442  222444555677899999999999998888899999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      ++++.|++.+.. |++.+....+ +.|++|||||+|+...+.+  ..+++..++++++  .+|++|||+++.||.++|..
T Consensus        81 ~~~~~S~~~~~~-~~~~i~~~~~~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~  155 (162)
T PF00071_consen   81 VTDEESFENLKK-WLEEIQKYKPEDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--VPYFEVSAKNGENVKEIFQE  155 (162)
T ss_dssp             TTBHHHHHTHHH-HHHHHHHHSTTTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHH
T ss_pred             cccccccccccc-ccccccccccccccceeeeccccccccccc--hhhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHH
Confidence            999999999995 9999998876 6999999999999876655  3456788888888  38999999999999999999


Q ss_pred             HHHHHc
Q 010548          171 AQKAVL  176 (507)
Q Consensus       171 i~~~i~  176 (507)
                      +++.++
T Consensus       156 ~i~~i~  161 (162)
T PF00071_consen  156 LIRKIL  161 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04112 Rab26 Rab26 subfamily

Probab=99.92  E-value=2.1e-24  Score=200.08  Aligned_cols=161  Identities=21%  Similarity=0.316  Sum_probs=129.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +||+++|++|||||||++++.+..+.. .+.++.. ... ....+....+.+.||||||++.+......+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 3333222 222 1234445568899999999998888888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||++++.+++++.. |+..+....+ ++|+++|+||+|+...+.+  ..+....+...++.  +++++||++|.|++++|
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~~--~~~e~Sa~~~~~v~~l~  155 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGERVV--KREDGERLAKEYGV--PFMETSAKTGLNVELAF  155 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhcccc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHH
Confidence            99999999999986 9988887653 7899999999999765444  33455666666653  79999999999999999


Q ss_pred             HHHHHHHcCC
Q 010548          169 YYAQKAVLHP  178 (507)
Q Consensus       169 ~~i~~~i~~~  178 (507)
                      ++|.+.+...
T Consensus       156 ~~l~~~~~~~  165 (191)
T cd04112         156 TAVAKELKHR  165 (191)
T ss_pred             HHHHHHHHHh
Confidence            9999887544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=99.92  E-value=2.8e-24  Score=199.95  Aligned_cols=163  Identities=19%  Similarity=0.240  Sum_probs=121.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchh--------hhHHhhcc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKR   82 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~   82 (507)
                      +||+|+|++|||||||+++++++.|...+.++.. ... ....+....+.+.+|||||...+..        ....+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988766444332 211 2223444558899999999764322        12345799


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhc----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +|++|+|||++++.|++.+.. |...+.+.    ..++|+++|+||+|+...+.+  ..+....++.+... +++++|||
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~e~Sa  156 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA--PRHVLSVLVRKSWK-CGYLECSA  156 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccc--cHHHHHHHHHHhcC-CcEEEecC
Confidence            999999999999999999886 87776653    357999999999999765444  23344455433222 37999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC
Q 010548          159 TTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      ++|.||+++|+.+++.+....
T Consensus       157 k~g~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         157 KYNWHILLLFKELLISATTRG  177 (198)
T ss_pred             CCCCCHHHHHHHHHHHhhccC
Confidence            999999999999998876554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.92  E-value=1.6e-24  Score=197.57  Aligned_cols=158  Identities=26%  Similarity=0.369  Sum_probs=128.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||++++.++.|...+.++.. .......+....+.+.+|||||++++..++..+++.+|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            5899999999999999999999888777655432 222334444556889999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++++.+++.+...|+..++...++.|+++|+||+|+...            +.+  ..+....+++.++. .++++|||+
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~a~~~~~-~~~~e~Sa~  157 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPV--SQSRAKALAEKIGA-CEYIECSAL  157 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCc--CHHHHHHHHHHhCC-CeEEEEeCC
Confidence            999999999876699888876568999999999998643            222  33456667776653 379999999


Q ss_pred             cCCCchHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQK  173 (507)
Q Consensus       160 ~g~gi~~l~~~i~~  173 (507)
                      +|.||+++|+.++-
T Consensus       158 ~~~~v~~lf~~~~~  171 (173)
T cd04130         158 TQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN03110 Rab GTPase; Provisional

Probab=99.92  E-value=3.3e-24  Score=202.56  Aligned_cols=172  Identities=20%  Similarity=0.241  Sum_probs=136.5

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHH
Q 010548            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (507)
Q Consensus         1 m~~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (507)
                      |.-+........+||+++|++|||||||+++|++..+...+.++.. .. .....+....+.+.+|||+|++++..+...
T Consensus         1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~   80 (216)
T PLN03110          1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA   80 (216)
T ss_pred             CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence            3344444455679999999999999999999999887655433222 22 133344455689999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      +++.++++|+|||++++.+++.+.. |+..++... .+.|+++|+||+|+...+.+  ..+....++..++.  +++++|
T Consensus        81 ~~~~~~~~ilv~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~l~~~~~~--~~~e~S  155 (216)
T PLN03110         81 YYRGAVGALLVYDITKRQTFDNVQR-WLRELRDHADSNIVIMMAGNKSDLNHLRSV--AEEDGQALAEKEGL--SFLETS  155 (216)
T ss_pred             HhCCCCEEEEEEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEEChhcccccCC--CHHHHHHHHHHcCC--EEEEEe
Confidence            9999999999999999999999886 998887754 37999999999999766554  33455666666653  799999


Q ss_pred             cccCCCchHHHHHHHHHHcC
Q 010548          158 ATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~  177 (507)
                      |++|.|++++|+.|.+.+..
T Consensus       156 A~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        156 ALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999887754

>cd01866 Rab2 Rab2 subfamily

Probab=99.92  E-value=3.5e-24  Score=194.37  Aligned_cols=160  Identities=20%  Similarity=0.272  Sum_probs=128.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+|+|++|||||||++++++..+.....++.. .. +....+......+.+|||+|.+++......+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999887555443222 11 12233445567899999999998888888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||++++.+++.+.. |+..+++. .+++|+++|+||+|+......  ..+....++...+.  +++++||+++.|++++|
T Consensus        84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~~  158 (168)
T cd01866          84 YDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEHGL--IFMETSAKTASNVEEAF  158 (168)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHH
Confidence            99999999999986 99888764 357999999999999865444  23445556666653  69999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      ..+.+.+.
T Consensus       159 ~~~~~~~~  166 (168)
T cd01866         159 INTAKEIY  166 (168)
T ss_pred             HHHHHHHH
Confidence            99988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=2.9e-25  Score=187.12  Aligned_cols=164  Identities=15%  Similarity=0.256  Sum_probs=139.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..-.+||+++|..-||||||+-|++.++|.....++...  .+....+......+.||||+|+++|..+-+.|+++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            445799999999999999999999999987664332211  123445556678899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ++|||+++++||+.++. |..+++... ..+-+++||||+||..++.+  ..++.+.++...|.  .|+++||+.+.||.
T Consensus        90 lLVyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEeeR~V--t~qeAe~YAesvGA--~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEERQV--TRQEAEAYAESVGA--LYMETSAKDNVGIS  164 (218)
T ss_pred             EEEEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHhhhh--hHHHHHHHHHhhch--hheecccccccCHH
Confidence            99999999999999997 999998863 35888999999999998887  55677888888886  59999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      ++|+.+....+.
T Consensus       165 elFe~Lt~~MiE  176 (218)
T KOG0088|consen  165 ELFESLTAKMIE  176 (218)
T ss_pred             HHHHHHHHHHHH
Confidence            999999877643

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.92  E-value=4.5e-24  Score=204.83  Aligned_cols=164  Identities=15%  Similarity=0.212  Sum_probs=127.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||+++++++.|...+.++.... .....+....+.+.||||+|.+.+..+...++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            589999999999999999999998877665544332 2233444556889999999998888888888999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhc----------CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           92 CNQQSTLSRLSSYWLPELRRL----------EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~----------~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ++++.||+.+.. |...+...          ..++|+|+|+||+|+...+.+ .. +++..+..... ...+++|||++|
T Consensus        81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~-~ei~~~~~~~~-~~~~~evSAktg  156 (247)
T cd04143          81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QR-DEVEQLVGGDE-NCAYFEVSAKKN  156 (247)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CH-HHHHHHHHhcC-CCEEEEEeCCCC
Confidence            999999999986 87777542          247999999999999765444 22 33334333221 236999999999


Q ss_pred             CCchHHHHHHHHHHcCCCC
Q 010548          162 IQVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~~~~~  180 (507)
                      .||+++|++|.+.+..+..
T Consensus       157 ~gI~elf~~L~~~~~~p~e  175 (247)
T cd04143         157 SNLDEMFRALFSLAKLPNE  175 (247)
T ss_pred             CCHHHHHHHHHHHhccccc
Confidence            9999999999997755543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04148 RGK RGK subfamily

Probab=99.92  E-value=7.3e-24  Score=200.74  Aligned_cols=184  Identities=21%  Similarity=0.236  Sum_probs=135.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc-cCCEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK-RADAVVL   88 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~ad~il~   88 (507)
                      +||+++|++|||||||+++|+.+.+. ..+.++..  .......+......+.+|||+|++  ......+++ .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999988875 44444432  222334455567889999999987  223345666 9999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.+++.+.. |+..+....  .++|+|+|+||+|+...+.+ . .+....++..++.  ++++|||++|.||++
T Consensus        79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v-~-~~~~~~~a~~~~~--~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREV-S-VQEGRACAVVFDC--KFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccccee-c-HHHHHHHHHHcCC--eEEEecCCCCCCHHH
Confidence            999999999999886 888887653  47999999999999776555 2 3334566666653  699999999999999


Q ss_pred             HHHHHHHHHcCCC------C---C-CCccchhcccHHHHHHHHHHHh
Q 010548          167 VFYYAQKAVLHPT------A---P-LFDHDEQTLKPRCVRALKRIFI  203 (507)
Q Consensus       167 l~~~i~~~i~~~~------~---~-~~~~~~~~~~~~~~~~l~~~~~  203 (507)
                      +|++|.+.+....      .   + ....+.......+.+.|.++..
T Consensus       154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~~~  200 (221)
T cd04148         154 LLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKLVA  200 (221)
T ss_pred             HHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHHHhc
Confidence            9999998874221      1   1 1222333455666666666554

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04116 Rab9 Rab9 subfamily

Probab=99.92  E-value=4e-24  Score=194.26  Aligned_cols=159  Identities=21%  Similarity=0.264  Sum_probs=126.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+++|++|||||||+++++++.+.....++....  .....+....+.+.+|||||++++..++..+++.+|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            46899999999999999999999988866543322211  1233445667889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      |||++++.+++.+.. |...+....     .+.|+++|+||+|+.. +..  ..+....++.+++. .+++++||++|.|
T Consensus        84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~e~Sa~~~~~  158 (170)
T cd04116          84 TFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQV--STEEAQAWCRENGD-YPYFETSAKDATN  158 (170)
T ss_pred             EEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECccccc-ccc--CHHHHHHHHHHCCC-CeEEEEECCCCCC
Confidence            999999999999876 887765432     3689999999999863 232  34456677777763 3789999999999


Q ss_pred             chHHHHHHHHH
Q 010548          164 VPDVFYYAQKA  174 (507)
Q Consensus       164 i~~l~~~i~~~  174 (507)
                      +.++|+.+++.
T Consensus       159 v~~~~~~~~~~  169 (170)
T cd04116         159 VAAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04113 Rab4 Rab4 subfamily

Probab=99.92  E-value=4.1e-24  Score=192.30  Aligned_cols=157  Identities=21%  Similarity=0.273  Sum_probs=126.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+|+|++|||||||+++|++..+.....+.... + +....+....+.+.+|||||++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999998876554433221 1 123344455688999999999988888899999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.++..+.. |+..++.. .+++|+++|+||+|+......  ..+....++..++  .+++++||+++.|++++|+
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  155 (161)
T cd04113          81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQREV--TFLEASRFAQENG--LLFLETSALTGENVEEAFL  155 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHHH
Confidence            9999999999886 88887654 358999999999999765444  3444566666666  3799999999999999999


Q ss_pred             HHHHH
Q 010548          170 YAQKA  174 (507)
Q Consensus       170 ~i~~~  174 (507)
                      ++.+.
T Consensus       156 ~~~~~  160 (161)
T cd04113         156 KCARS  160 (161)
T ss_pred             HHHHh
Confidence            99874

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.92  E-value=5.1e-24  Score=194.43  Aligned_cols=162  Identities=24%  Similarity=0.382  Sum_probs=127.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      .||+|+|++|||||||++++.++.+...+.++.. .......+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            6899999999999999999999988766544332 222333445556789999999999888888788999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ++++.+++.+...|...+++..+++|+++|+||+|+......          .........++..++.. ++++|||++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF-GYMECSAKTK  160 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc-EEEEeccccC
Confidence            999999999977799888876668999999999998653210          01123445556555532 6999999999


Q ss_pred             CCchHHHHHHHHHH
Q 010548          162 IQVPDVFYYAQKAV  175 (507)
Q Consensus       162 ~gi~~l~~~i~~~i  175 (507)
                      .|++++|++|.+.+
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.92  E-value=6e-24  Score=191.76  Aligned_cols=158  Identities=16%  Similarity=0.253  Sum_probs=124.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCC-Cee-eCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHA-PTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~-~~t-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      +||+++|++|||||||++++...  .+...+.++.. .+. ....+ ....+.+.+|||||++.+..+...+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  55555444332 221 11222 245689999999999888888999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|||++++.++..+.. |+..+.....++|+++|+||+|+.+...+  .......+...++  .++++|||++|.|++++
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l  155 (164)
T cd04101          81 LVYDVSNKASFENCSR-WVNKVRTASKHMPGVLVGNKMDLADKAEV--TDAQAQAFAQANQ--LKFFKTSALRGVGYEEP  155 (164)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--CeEEEEeCCCCCChHHH
Confidence            9999999999998875 99888876567999999999999765544  2223344555554  36899999999999999


Q ss_pred             HHHHHHHH
Q 010548          168 FYYAQKAV  175 (507)
Q Consensus       168 ~~~i~~~i  175 (507)
                      |+.+.+.+
T Consensus       156 ~~~l~~~~  163 (164)
T cd04101         156 FESLARAF  163 (164)
T ss_pred             HHHHHHHh
Confidence            99998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04125 RabA_like RabA-like subfamily

Probab=99.92  E-value=5.8e-24  Score=196.65  Aligned_cols=160  Identities=21%  Similarity=0.296  Sum_probs=128.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||+++|.++.+...+.++.....  ....+....+.+.+|||+|.+.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999988664444332211  22344455688999999999988888999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.++..+.. |+..++... .+.|+++|+||+|+.+...+  ..+....++...+.  +++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSLNI--PFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCcccccC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHHH
Confidence            9999999999987 999887753 36899999999999865544  23344555555543  699999999999999999


Q ss_pred             HHHHHHcC
Q 010548          170 YAQKAVLH  177 (507)
Q Consensus       170 ~i~~~i~~  177 (507)
                      ++.+.+..
T Consensus       156 ~l~~~~~~  163 (188)
T cd04125         156 LLVKLIIK  163 (188)
T ss_pred             HHHHHHHH
Confidence            99988754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01892 Miro2 Miro2 subfamily

Probab=99.92  E-value=5.4e-24  Score=193.36  Aligned_cols=163  Identities=17%  Similarity=0.159  Sum_probs=127.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ++.+||+++|++|||||||+++++++.|. ..+.++. .... ....+....+.+.+||++|.+.+..+...+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999987 5554433 2222 2234445567899999999998888888999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      ++|||++++.+++.+.. |+..+... .++|+++|+||+|+.+....  .......+++.++.. .++++||++|.|+++
T Consensus        82 llv~d~~~~~s~~~~~~-~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~  156 (169)
T cd01892          82 CLVYDSSDPKSFSYCAE-VYKKYFML-GEIPCLFVAAKADLDEQQQR--YEVQPDEFCRKLGLP-PPLHFSSKLGDSSNE  156 (169)
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHhccC-CCCeEEEEEEcccccccccc--cccCHHHHHHHcCCC-CCEEEEeccCccHHH
Confidence            99999999999998875 77766432 37999999999999654332  122345556666532 469999999999999


Q ss_pred             HHHHHHHHHcC
Q 010548          167 VFYYAQKAVLH  177 (507)
Q Consensus       167 l~~~i~~~i~~  177 (507)
                      +|+.+.+.+..
T Consensus       157 lf~~l~~~~~~  167 (169)
T cd01892         157 LFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHhhC
Confidence            99999987754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=99.92  E-value=2.6e-24  Score=195.22  Aligned_cols=157  Identities=9%  Similarity=0.069  Sum_probs=115.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ++.+||+++|++|||||||+++|..+.+....++......   .+...++.+.+|||||++.+...+..+++.+|++|+|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE---EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            3568999999999999999999998776433333222211   2224578999999999999988889999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHH--H-hcccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--Q-FREIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.+++.+...|...+... .+++|++||+||+|+.....    .+++.....  . .....++++|||++|.|++
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK----PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC----HHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            99999999998877444444432 34799999999999865321    122222221  1 1111257999999999999


Q ss_pred             HHHHHHHH
Q 010548          166 DVFYYAQK  173 (507)
Q Consensus       166 ~l~~~i~~  173 (507)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04111 Rab39 Rab39 subfamily

Probab=99.92  E-value=7e-24  Score=199.45  Aligned_cols=160  Identities=20%  Similarity=0.275  Sum_probs=128.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+||+|+|++|||||||+++|++..+.....++.. ... ....+ ....+.+.+|||+|++.+..+...+++.+|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            48999999999999999999999887665443222 111 11222 2345789999999999998888899999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.|++.+.. |+..+.+..  ...|+++|+||+|+.....+  ..+....+++.++  .++++|||++|.||++
T Consensus        82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--MKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHH
Confidence            999999999999986 888876542  25788999999999875554  3445677777776  3799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|+.|.+.+.
T Consensus       157 ~f~~l~~~~~  166 (211)
T cd04111         157 AFELLTQEIY  166 (211)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=4.7e-24  Score=198.23  Aligned_cols=154  Identities=16%  Similarity=0.273  Sum_probs=124.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCCh
Q 010548           18 VGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ   95 (507)
Q Consensus        18 vG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~   95 (507)
                      +|++|||||||+++++.+.|...+.++.. .. +....++...+++.||||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888666554432 11 23334455678999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548           96 STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus        96 ~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .|++.+.. |+..+++..+++|+++||||+|+... .+ . .+. ..+++..+  .+|++|||++|.||.++|++|++.+
T Consensus        81 ~S~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-~v-~-~~~-~~~~~~~~--~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176       81 VTYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKDR-KV-K-AKS-ITFHRKKN--LQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             HHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc-cC-C-HHH-HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999986 99999887778999999999998643 23 2 222 24555444  3799999999999999999999987


Q ss_pred             cCC
Q 010548          176 LHP  178 (507)
Q Consensus       176 ~~~  178 (507)
                      ...
T Consensus       154 ~~~  156 (200)
T smart00176      154 IGD  156 (200)
T ss_pred             Hhc
Confidence            554

Ran is involved in the active transport of proteins through nuclear pores.

>cd04177 RSR1 RSR1 subgroup

Probab=99.92  E-value=9.3e-24  Score=191.56  Aligned_cols=161  Identities=22%  Similarity=0.325  Sum_probs=129.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+++|++|||||||++++.++.+...+.++.... .....+....+.+.+|||||++.+..+++.+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            3799999999999999999999988866655443322 233344555688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.+++.+.. |...+.+.  ..++|+++|+||+|+...+..  ..+....+++.++. .+++++||++|.|++++|
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~-~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQV--SREDGVSLSQQWGN-VPFYETSARKRTNVDEVF  156 (168)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHcCC-ceEEEeeCCCCCCHHHHH
Confidence            9999999999986 88877653  347999999999999765544  23345556666653 379999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      +++.+.++
T Consensus       157 ~~i~~~~~  164 (168)
T cd04177         157 IDLVRQII  164 (168)
T ss_pred             HHHHHHHh
Confidence            99987653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.92  E-value=4.7e-24  Score=192.82  Aligned_cols=157  Identities=23%  Similarity=0.322  Sum_probs=123.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCcc-chhhhHHhhccCCEEEEEEe
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~il~V~D   91 (507)
                      ||+++|++|||||||+++++.+.+...++++.. .......++...+.+.+|||||+.. +......+++.+|++|+|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999998887666554332 2222334455567899999999875 34556788999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC-CchHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVPDV  167 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~~l  167 (507)
                      ++++.|++.+.. |...+....   .++|+++|+||+|+...+.+  ..+....+++.++.  ++++|||++|. ||+++
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146          81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQV--STEEGEKLASELGC--LFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCcc--CHHHHHHHHHHcCC--EEEEeCCCCCchhHHHH
Confidence            999999999976 888777643   47999999999998765544  33455667777763  79999999994 99999


Q ss_pred             HHHHHHHH
Q 010548          168 FYYAQKAV  175 (507)
Q Consensus       168 ~~~i~~~i  175 (507)
                      |+.|.+.+
T Consensus       156 f~~l~~~~  163 (165)
T cd04146         156 FHELCREV  163 (165)
T ss_pred             HHHHHHHH
Confidence            99998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.91  E-value=8.4e-25  Score=196.85  Aligned_cols=168  Identities=27%  Similarity=0.410  Sum_probs=147.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+|++|||+.+||||+|+..+..+.|... +|+..+++.....++ ...+.+.+|||+|+++|..+++..+..+|+|++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            458999999999999999999999999888 555666777777774 888999999999999999988889999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC-----------CccchhhhhHHHHHHhcccCcEEEeC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----------NATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      ||++.++.|++++.++|+++++.++++.|+|+||+|.||..+.           .. ...+....++++.|.. .|+|||
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~-Vt~~~g~~lA~~iga~-~y~EcS  160 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEP-VTYEQGLELAKEIGAV-KYLECS  160 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCc-ccHHHHHHHHHHhCcc-eeeeeh
Confidence            9999999999999999999999999999999999999998531           11 2445677888888864 799999


Q ss_pred             cccCCCchHHHHHHHHHHcCCCC
Q 010548          158 ATTMIQVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~~~~  180 (507)
                      |++..|+.++|+..++.++.+..
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999999887654

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.91  E-value=7.2e-24  Score=179.81  Aligned_cols=163  Identities=18%  Similarity=0.253  Sum_probs=134.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ....++++++|++-||||||+..++.++|.+-..++....-  .-+++. +..+++++|||+|++++++....|++++-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            34578999999999999999999999998765444221111  111222 447899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcE-EEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPI-IVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~pi-ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +++|||++|+.||+++.. |..+....  +|.+++ .+||+|+|+...+++  ..++.+.++...+.  .++|+||++|.
T Consensus        85 vllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa~hgM--~FVETSak~g~  159 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAASHGM--AFVETSAKNGC  159 (213)
T ss_pred             eEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccc--cHHHHHHHHHhcCc--eEEEecccCCC
Confidence            999999999999999997 99887654  345554 689999999998888  56778999999987  69999999999


Q ss_pred             CchHHHHHHHHHHc
Q 010548          163 QVPDVFYYAQKAVL  176 (507)
Q Consensus       163 gi~~l~~~i~~~i~  176 (507)
                      ||++.|+.|.+.+.
T Consensus       160 NVeEAF~mlaqeIf  173 (213)
T KOG0091|consen  160 NVEEAFDMLAQEIF  173 (213)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999988764

>cd04118 Rab24 Rab24 subfamily

Probab=99.91  E-value=1.5e-23  Score=194.75  Aligned_cols=162  Identities=20%  Similarity=0.225  Sum_probs=127.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +||+|+|++|||||||+++|+++.+.. .+.++.....  ....+....+.+.+|||+|++++..+...+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 3433332211  2334445567889999999998888888899999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC--ccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ||++++.+++.+.. |+..++...++.|+++|+||+|+.....  .....+....++..++.  +++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l  157 (193)
T cd04118          81 YDLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA--QHFETSSKTGQNVDEL  157 (193)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC--eEEEEeCCCCCCHHHH
Confidence            99999999999875 9999887766899999999999864321  10122344555655543  6899999999999999


Q ss_pred             HHHHHHHHcC
Q 010548          168 FYYAQKAVLH  177 (507)
Q Consensus       168 ~~~i~~~i~~  177 (507)
                      |+.|.+.+..
T Consensus       158 ~~~i~~~~~~  167 (193)
T cd04118         158 FQKVAEDFVS  167 (193)
T ss_pred             HHHHHHHHHH
Confidence            9999988754

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03118 Rab family protein; Provisional

Probab=99.91  E-value=1.8e-23  Score=197.03  Aligned_cols=166  Identities=21%  Similarity=0.314  Sum_probs=129.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ....+||+|+|++|||||||+++|++..+....++...... ....++...+.+.+|||||++.+..++..+++.+|++|
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            44578999999999999999999998876432222222221 22334455688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.+++.+...|...+....  .+.|+++|+||+|+......  ..+....++...+.  ++++|||++|.|++
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i--~~~~~~~~~~~~~~--~~~e~SAk~~~~v~  166 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV--SREEGMALAKEHGC--LFLECSAKTRENVE  166 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence            99999999999999877877776542  36899999999999765544  23344555555553  68999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 010548          166 DVFYYAQKAVLHP  178 (507)
Q Consensus       166 ~l~~~i~~~i~~~  178 (507)
                      ++|+.|.+.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (211)
T PLN03118        167 QCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887554

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.91  E-value=1.9e-23  Score=188.21  Aligned_cols=159  Identities=21%  Similarity=0.264  Sum_probs=128.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||+++++++.+.....++.. .. +....+....+.+.+|||||++++......+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999987664333222 12 23445556678999999999988888888899999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      +|++++.++..+.. |+..+.... ++.|+++|+||+|+......  ..+....+....+  .+++++||++|.|+.+++
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~  155 (163)
T cd01860          81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESKRQV--STEEAQEYADENG--LLFFETSAKTGENVNELF  155 (163)
T ss_pred             EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccCcC--CHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence            99999999999886 888877654 57999999999998765443  2334555666665  369999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      ++|.+.+
T Consensus       156 ~~l~~~l  162 (163)
T cd01860         156 TEIAKKL  162 (163)
T ss_pred             HHHHHHh
Confidence            9998764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.91  E-value=1.9e-23  Score=188.31  Aligned_cols=159  Identities=23%  Similarity=0.343  Sum_probs=126.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||++++.+..+.....+.... .. ....+....+.+.+||+||+..+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988875443332221 11 22333344578999999999988888899999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.+++.+.. |+..+.... +++|+++|+||+|+......  ..+....+...++.  +++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~l~~  155 (164)
T smart00175       81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHGL--PFFETSAKTNTNVEEAFE  155 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccccCC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHHHH
Confidence            9999999999886 988877654 57999999999998765443  23445556666653  699999999999999999


Q ss_pred             HHHHHHc
Q 010548          170 YAQKAVL  176 (507)
Q Consensus       170 ~i~~~i~  176 (507)
                      .|.+.+.
T Consensus       156 ~i~~~~~  162 (164)
T smart00175      156 ELAREIL  162 (164)
T ss_pred             HHHHHHh
Confidence            9988763

Rab GTPases are implicated in vesicle trafficking.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.91  E-value=1.6e-23  Score=190.38  Aligned_cols=159  Identities=21%  Similarity=0.319  Sum_probs=125.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccch-hhhHHhhccCCEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVL   88 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~il~   88 (507)
                      .+||+++|++|||||||+++++...+.....++.. .. .....+....+.+.+|||+|++.+. .++..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            48999999999999999999998887655433221 11 1223344556899999999998876 467788999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc---CCC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MIQ  163 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---g~g  163 (507)
                      |||++++.++..+.. |...+....  .++|+++|+||+|+...+.+  ..+....+++..+  .++++|||++   +.|
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~e~Sa~~~~~~~~  156 (170)
T cd04115          82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQV--PTDLAQRFADAHS--MPLFETSAKDPSENDH  156 (170)
T ss_pred             EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCC--CHHHHHHHHHHcC--CcEEEEeccCCcCCCC
Confidence            999999999999986 998887653  47999999999999876555  3344556666654  3799999999   899


Q ss_pred             chHHHHHHHHHH
Q 010548          164 VPDVFYYAQKAV  175 (507)
Q Consensus       164 i~~l~~~i~~~i  175 (507)
                      ++++|..+.+.+
T Consensus       157 i~~~f~~l~~~~  168 (170)
T cd04115         157 VEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01861 Rab6 Rab6 subfamily

Probab=99.91  E-value=2.2e-23  Score=187.48  Aligned_cols=157  Identities=17%  Similarity=0.266  Sum_probs=122.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||++++++..+.....+... .. .....+....+.+.+|||||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999887655333222 11 122233344578999999999999888999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.+++.+.. |+..+.... .+.|+++|+||+|+......  ..+....+.+..+  .+++++||+++.|++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~  155 (161)
T cd01861          81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--AMFIETSAKAGHNVKELFR  155 (161)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHHH
Confidence            9999999999886 888776543 36999999999999654443  2334455555554  3699999999999999999


Q ss_pred             HHHHH
Q 010548          170 YAQKA  174 (507)
Q Consensus       170 ~i~~~  174 (507)
                      +|.+.
T Consensus       156 ~i~~~  160 (161)
T cd01861         156 KIASA  160 (161)
T ss_pred             HHHHh
Confidence            98764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.5e-24  Score=178.79  Aligned_cols=162  Identities=20%  Similarity=0.278  Sum_probs=132.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .--+||++||..|||||.|+.+++.+-|++....++. +.. .++.+.+++++++||||+|+++|++....|++.|+++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            3468999999999999999999999888665333221 222 44566678999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++...||+-+.+ |+.+|+.+.. ++--|+||||+|+.+.+++  .....+.+.+....  -++++||+...|++.
T Consensus        85 lvydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~drrev--p~qigeefs~~qdm--yfletsakea~nve~  159 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADRREV--PQQIGEEFSEAQDM--YFLETSAKEADNVEK  159 (213)
T ss_pred             EEEecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhhhhh--hHHHHHHHHHhhhh--hhhhhcccchhhHHH
Confidence            9999999999999997 9999998753 4556899999999887776  44455556555433  479999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      ||..+.-.+.
T Consensus       160 lf~~~a~rli  169 (213)
T KOG0095|consen  160 LFLDLACRLI  169 (213)
T ss_pred             HHHHHHHHHH
Confidence            9998876553

>cd00157 Rho Rho (Ras homology) family

Probab=99.91  E-value=1.8e-23  Score=189.93  Aligned_cols=160  Identities=28%  Similarity=0.432  Sum_probs=127.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||+++|++..+.... ++...............+.+.+|||||++++.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999999874443 33222222333444567889999999999888888888899999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc---------chhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT---------SLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      ++++.++......|...+.....++|+++|+||+|+.......         ...+....+...++.. +++++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI-GYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe-EEEEeecCCCC
Confidence            9999999998878998888776689999999999997654220         1234455566666543 79999999999


Q ss_pred             CchHHHHHHHH
Q 010548          163 QVPDVFYYAQK  173 (507)
Q Consensus       163 gi~~l~~~i~~  173 (507)
                      |+.++++.|++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-23  Score=176.58  Aligned_cols=166  Identities=20%  Similarity=0.278  Sum_probs=134.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ....-+|++++|+.|.|||+|+.+++.++|......+..--  ..-+.+..+.++++||||+|+++|++..+.|+++|-+
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            34557899999999999999999999998866654421110  0222344667899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      .++|||+++++||+.+.. |+..++... +++-+|++|||.||..++++ ... +...++++..-  .+.++||++|+||
T Consensus        85 AlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~R~V-tfl-EAs~FaqEnel--~flETSa~TGeNV  159 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPEREV-TFL-EASRFAQENEL--MFLETSALTGENV  159 (214)
T ss_pred             eEEEEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChhhhh-hHH-HHHhhhcccce--eeeeecccccccH
Confidence            999999999999999997 999988764 47889999999999999888 444 44555554432  5899999999999


Q ss_pred             hHHHHHHHHHHcCC
Q 010548          165 PDVFYYAQKAVLHP  178 (507)
Q Consensus       165 ~~l~~~i~~~i~~~  178 (507)
                      ++.|-...+.++..
T Consensus       160 EEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  160 EEAFLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998888877543

>cd04129 Rho2 Rho2 subfamily

Probab=99.91  E-value=3.4e-23  Score=191.34  Aligned_cols=162  Identities=27%  Similarity=0.365  Sum_probs=126.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      .||+|+|++|||||||++++..+.+.....++. ........+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            699999999999999999999877755433322 2222223334445778999999998887777778899999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC---------CccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           92 CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH---------NATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +++.++++.+...|...+++..++.|+++|+||+|+....         .. ...+....+++.++.. ++++|||++|.
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~  159 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRF-VPIQQGKRVAKEIGAK-KYMECSALTGE  159 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCc-CCHHHHHHHHHHhCCc-EEEEccCCCCC
Confidence            9999999999867999998777789999999999985421         11 1223456677777632 69999999999


Q ss_pred             CchHHHHHHHHHHc
Q 010548          163 QVPDVFYYAQKAVL  176 (507)
Q Consensus       163 gi~~l~~~i~~~i~  176 (507)
                      ||+++|+.+.+.++
T Consensus       160 ~v~~~f~~l~~~~~  173 (187)
T cd04129         160 GVDDVFEAATRAAL  173 (187)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=1.9e-23  Score=191.76  Aligned_cols=157  Identities=12%  Similarity=0.138  Sum_probs=117.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||++++..+.+....++.....+   .+...++.+.+|||||++.+..++..+++++|++|+|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~---~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V   91 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE---EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4568999999999999999999998776543333222221   2344678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc------CcEEEeCcccCC
Q 010548           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI------ETCVECSATTMI  162 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~SA~~g~  162 (507)
                      ||++++.++..+...+...+.. ..+++|++||+||+|+.+....       ..+...++..      ..+++|||++|+
T Consensus        92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~l~l~~~~~~~~~~~~~Sa~~g~  164 (181)
T PLN00223         92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-------AEITDKLGLHSLRQRHWYIQSTCATSGE  164 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH-------HHHHHHhCccccCCCceEEEeccCCCCC
Confidence            9999999998887633333332 2247999999999999764321       1222222211      135689999999


Q ss_pred             CchHHHHHHHHHHc
Q 010548          163 QVPDVFYYAQKAVL  176 (507)
Q Consensus       163 gi~~l~~~i~~~i~  176 (507)
                      ||.++|++|.+.+.
T Consensus       165 gv~e~~~~l~~~~~  178 (181)
T PLN00223        165 GLYEGLDWLSNNIA  178 (181)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>cd01862 Rab7 Rab7 subfamily

Probab=99.91  E-value=3.9e-23  Score=187.80  Aligned_cols=162  Identities=22%  Similarity=0.270  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||++++.+..+.....++.. ... ....+....+.+.+|||||++.+..+...+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999887555433222 111 22334445678899999999988888899999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |++++.+++.+.. |...+....     .++|+++|+||+|+......  ..+....++...+. .+++++||++|.|++
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  156 (172)
T cd01862          81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWCQSNGN-IPYFETSAKEAINVE  156 (172)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECccccccccc--CHHHHHHHHHHcCC-ceEEEEECCCCCCHH
Confidence            9999999988875 777654433     27999999999999754333  23445566666653 379999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 010548          166 DVFYYAQKAVLHP  178 (507)
Q Consensus       166 ~l~~~i~~~i~~~  178 (507)
                      ++++.|.+.+...
T Consensus       157 ~l~~~i~~~~~~~  169 (172)
T cd01862         157 QAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999876543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.91  E-value=2.4e-23  Score=190.17  Aligned_cols=160  Identities=12%  Similarity=0.116  Sum_probs=115.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ++.+||+++|.+|||||||++++..+.+....++......   .+....+.+.+|||||++.+...+..+++++|++|+|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE---TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE---EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            4569999999999999999999987776433333222111   2224578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHH-HHh-cccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQF-REIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~SA~~g~gi~~  166 (507)
                      ||++++.+++...+.|...++.. .+++|++||+||+|+.+....   .+....+. ... .....++++||++|.|+++
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            99999999999887344444332 247899999999999754221   11111110 000 1111467899999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +|++|.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999997754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.91  E-value=2e-23  Score=187.63  Aligned_cols=155  Identities=12%  Similarity=0.121  Sum_probs=112.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +||+++|.+|||||||++++..+.+....++......   .+....+.+.+|||||++++...+..+++++|++|+|||+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~   77 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE---EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence            5899999999999999999988777543333222221   1234578899999999999988999999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHH-Hh-cccCcEEEeCcccCCCchHHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QF-REIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      +++.+++.+.+.|...++.. ..++|++||+||+|+.+...   ..+....+.. .. .....+++|||++|.||+++|+
T Consensus        78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~  154 (159)
T cd04150          78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence            99999999887444444332 23689999999999965321   1121222211 11 1111467999999999999999


Q ss_pred             HHHH
Q 010548          170 YAQK  173 (507)
Q Consensus       170 ~i~~  173 (507)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04150         155 WLSN  158 (159)
T ss_pred             HHhc
Confidence            9854

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=99.90  E-value=3.8e-23  Score=187.81  Aligned_cols=156  Identities=16%  Similarity=0.200  Sum_probs=117.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      ||+++|.+|||||||++++.+..+....++......   .+...++.+.+|||||+..+...+..+++.+|++++|||++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~---~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s   77 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE---TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS   77 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE---EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence            689999999999999999998876442333222221   23446789999999999988888999999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc----ccCcEEEeCcccCCCchHH
Q 010548           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----EIETCVECSATTMIQVPDV  167 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l  167 (507)
                      ++.++.++.. |+..+.+.  ..+.|+++|+||+|+....    ..+....++...+    ....+++|||++|.||+++
T Consensus        78 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          78 HRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGAL----SVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             cHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccCC----CHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            9999999876 65555432  2358999999999996532    1233333332111    1125789999999999999


Q ss_pred             HHHHHHHHcC
Q 010548          168 FYYAQKAVLH  177 (507)
Q Consensus       168 ~~~i~~~i~~  177 (507)
                      |++|.+.+..
T Consensus       153 f~~l~~~~~~  162 (169)
T cd04158         153 LDWLSRQLVA  162 (169)
T ss_pred             HHHHHHHHhh
Confidence            9999887643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.90  E-value=6.5e-23  Score=184.67  Aligned_cols=158  Identities=22%  Similarity=0.346  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|++|||||||+++++...+...+.+... .......++...+.+.+|||||+..+......+++.+|++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            5899999999999999999999887666444332 222333445567889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ++++.++..+.. |...+...  ..++|+++|+||+|+......  .......+...++.  +++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~  155 (164)
T cd04139          81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQV--SSEEAANLARQWGV--PYVETSAKTRQNVEKAFY  155 (164)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhCC--eEEEeeCCCCCCHHHHHH
Confidence            999999999887 66555543  247999999999999763332  23344555666653  799999999999999999


Q ss_pred             HHHHHH
Q 010548          170 YAQKAV  175 (507)
Q Consensus       170 ~i~~~i  175 (507)
                      .+.+.+
T Consensus       156 ~l~~~~  161 (164)
T cd04139         156 DLVREI  161 (164)
T ss_pred             HHHHHH
Confidence            998765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04123 Rab21 Rab21 subfamily

Probab=99.90  E-value=7.1e-23  Score=183.94  Aligned_cols=158  Identities=20%  Similarity=0.304  Sum_probs=124.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||++++++..+.....+.. .... ....+....+.+.+|||+|++.+..+...+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            589999999999999999999988755433222 2111 22233344578999999999888888889999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.+++.+.. |...++.... ++|+++|+||+|+......  ..+....+...++.  +++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~--~~~~~s~~~~~gi~~~~~  155 (162)
T cd04123          81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQRVV--SKSEAEEYAKSVGA--KHFETSAKTGKGIEELFL  155 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHHH
Confidence            9999999999886 8888776543 6899999999999865443  23344555555553  689999999999999999


Q ss_pred             HHHHHH
Q 010548          170 YAQKAV  175 (507)
Q Consensus       170 ~i~~~i  175 (507)
                      +|.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04123         156 SLAKRM  161 (162)
T ss_pred             HHHHHh
Confidence            998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03108 Rab family protein; Provisional

Probab=99.90  E-value=7.2e-23  Score=192.59  Aligned_cols=162  Identities=19%  Similarity=0.249  Sum_probs=129.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+|+|++|||||||+++|++..+.....++... .. ....+....+.+.+|||+|.+.+..+...+++.+|++|+
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999998876554332221 11 123344456789999999999888888899999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |||++++.+++.+.. |+..+... .++.|+++|+||+|+...+..  ..+....+++.++.  +++++||+++.||+++
T Consensus        85 v~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~~~~v~e~  159 (210)
T PLN03108         85 VYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHRRAV--STEEGEQFAKEHGL--IFMEASAKTAQNVEEA  159 (210)
T ss_pred             EEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHHH
Confidence            999999999999876 88776654 347999999999999876554  33456667777653  7999999999999999


Q ss_pred             HHHHHHHHcC
Q 010548          168 FYYAQKAVLH  177 (507)
Q Consensus       168 ~~~i~~~i~~  177 (507)
                      |+++++.+..
T Consensus       160 f~~l~~~~~~  169 (210)
T PLN03108        160 FIKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHHH
Confidence            9999887753

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=4.9e-23  Score=189.28  Aligned_cols=161  Identities=14%  Similarity=0.155  Sum_probs=117.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ++.+||+++|++|||||||++++..+.+....++......   .+...++.+.+|||||++.+..++..+++.+|++|+|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE---TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE---EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4568999999999999999999987777543333222221   2334678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-hc-ccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~g~gi~~  166 (507)
                      ||++++.++......+...++.. ..++|++||+||+|+......   .+....+... .. ....++++||++|.|+++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999998876444444432 246899999999998653221   1111111110 10 011467999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       169 ~~~~l~~~i~  178 (182)
T PTZ00133        169 GLDWLSANIK  178 (182)
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>cd01863 Rab18 Rab18 subfamily

Probab=99.90  E-value=1.3e-22  Score=182.38  Aligned_cols=156  Identities=21%  Similarity=0.290  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||+++|.+..+.....++... .. ....+....+.+.+|||||++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998875543332222 11 22234455688999999999988888889999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |++++.+++.+.. |...+.+..  .+.|+++|+||+|+.....   ..+....+....+  .+++++||++|.|+++++
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~  154 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENREV---TREEGLKFARKHN--MLFIETSAKTRDGVQQAF  154 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccccc---CHHHHHHHHHHcC--CEEEEEecCCCCCHHHHH
Confidence            9999999999887 988887653  4799999999999974322   2234555666554  379999999999999999


Q ss_pred             HHHHHH
Q 010548          169 YYAQKA  174 (507)
Q Consensus       169 ~~i~~~  174 (507)
                      +.+.+.
T Consensus       155 ~~~~~~  160 (161)
T cd01863         155 EELVEK  160 (161)
T ss_pred             HHHHHh
Confidence            998764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.90  E-value=3.7e-23  Score=186.85  Aligned_cols=154  Identities=19%  Similarity=0.231  Sum_probs=118.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC
Q 010548           15 VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~   94 (507)
                      |+++|++|||||||++++.+..+...+.++.....  ..+...++++.+|||+|+..+..++..+++.+|++|+|||+++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~   79 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD   79 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence            79999999999999999999877665444332211  2344567899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch--hhhhHHHHHHhcccCcEEEeCccc------CCCchH
Q 010548           95 QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFREIETCVECSATT------MIQVPD  166 (507)
Q Consensus        95 ~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~SA~~------g~gi~~  166 (507)
                      +.++..... |+..+....+++|+++|+||+|+...+.....  ......++++.+.  .+++|||++      ++||++
T Consensus        80 ~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          80 SERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW--ILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             HHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce--EEEEeeecCCCChhHHHHHHH
Confidence            999998876 77766554468999999999999776543000  1123444444332  578888888      999999


Q ss_pred             HHHHHHH
Q 010548          167 VFYYAQK  173 (507)
Q Consensus       167 l~~~i~~  173 (507)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04114 Rab30 Rab30 subfamily

Probab=99.90  E-value=2e-22  Score=182.81  Aligned_cols=161  Identities=19%  Similarity=0.264  Sum_probs=123.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+++|++|||||||++++.++.+.....++.. .. .....+....+.+.+|||+|+..+......+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4568999999999999999999998776544322211 11 112234444578999999999888888889999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |...++.... +.|+++|+||+|+...+.+  ..+....+.+...  .++++|||++|.|+++
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~  159 (169)
T cd04114          85 LTYDITCEESFRCLPE-WLREIEQYANNKVITILVGNKIDLAERREV--SQQRAEEFSDAQD--MYYLETSAKESDNVEK  159 (169)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--CeEEEeeCCCCCCHHH
Confidence            9999999999998875 8888776543 6999999999999765554  2233344444443  3689999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +|+.|.+.+
T Consensus       160 l~~~i~~~~  168 (169)
T cd04114         160 LFLDLACRL  168 (169)
T ss_pred             HHHHHHHHh
Confidence            999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.89  E-value=6.9e-22  Score=186.77  Aligned_cols=167  Identities=14%  Similarity=0.248  Sum_probs=129.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      ......+||+++|++|||||||+++++.+.+...+.++.....  .......+.+.+.+|||+|++.+......+++.++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            3356679999999999999999999988877655544333222  22223456789999999999988888888999999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      ++++|||++++.++..+.. |...+.....+.|+++|+||+|+.... . . .+ ...+....+.  .++++||++|.|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~-~-~~-~~~~~~~~~~--~~~e~Sa~~~~~v  156 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPN-WHRDIVRVCENIPIVLVGNKVDVKDRQ-V-K-AR-QITFHRKKNL--QYYDISAKSNYNF  156 (215)
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECccCcccc-C-C-HH-HHHHHHHcCC--EEEEEeCCCCCCH
Confidence            9999999999999999985 988887766789999999999986432 2 1 12 2234444432  6899999999999


Q ss_pred             hHHHHHHHHHHcCCCC
Q 010548          165 PDVFYYAQKAVLHPTA  180 (507)
Q Consensus       165 ~~l~~~i~~~i~~~~~  180 (507)
                      +++|.+|++.+...+.
T Consensus       157 ~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        157 EKPFLWLARRLTNDPN  172 (215)
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999998865543

>cd04154 Arl2 Arl2 subfamily

Probab=99.89  E-value=1.6e-22  Score=184.33  Aligned_cols=156  Identities=15%  Similarity=0.164  Sum_probs=114.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +..+||+++|++|||||||++++.+..+. .+.++......  .+..+++.+.+|||||++.+..++..+++.+|++++|
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQIK--TLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            45689999999999999999999987543 22222111111  1223468899999999988888888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHh--cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh---cccCcEEEeCcccCCCc
Q 010548           90 YACNQQSTLSRLSSYWLPELRR--LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---REIETCVECSATTMIQV  164 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~g~gi  164 (507)
                      ||++++.++..... |+..+..  ...++|+++|+||+|+......    +....+....   ....++++|||++|.|+
T Consensus        89 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          89 VDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGALSE----EEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCCCH----HHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            99999999988876 5555432  2247999999999999764321    2223222211   11236999999999999


Q ss_pred             hHHHHHHHH
Q 010548          165 PDVFYYAQK  173 (507)
Q Consensus       165 ~~l~~~i~~  173 (507)
                      +++|+++..
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999998853

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04157 Arl6 Arl6 subfamily

Probab=99.89  E-value=9.6e-23  Score=183.37  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +|+++|++|||||||+++|.+..+ ...+.++.. .+. ..+...++++.+|||||.+++..++..+++.+|++|+|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g-~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~   78 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG-FNV-ESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS   78 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccc-cce-EEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence            589999999999999999998753 333333222 111 12334678999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhc----CCCCcEEEEEecccCCCCCCccchhhhhHHHHH--H-hcccCcEEEeCcccCCCch
Q 010548           93 NQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--Q-FREIETCVECSATTMIQVP  165 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~SA~~g~gi~  165 (507)
                      +++.++..... |+..+.+.    ..++|+++|+||+|+......    ........  . .....++++|||++|.|++
T Consensus        79 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          79 SDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALTA----VKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             CcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCCH----HHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            99999887765 66655432    247999999999999754221    11111110  1 1111258999999999999


Q ss_pred             HHHHHHHH
Q 010548          166 DVFYYAQK  173 (507)
Q Consensus       166 ~l~~~i~~  173 (507)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999854

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.89  E-value=2.8e-22  Score=184.53  Aligned_cols=160  Identities=13%  Similarity=0.166  Sum_probs=118.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcc-cCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDF-YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|.+|||||||++++....+....++...... ..... ...++.+.+|||+|++.+..++..+++.+|++++|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999998887655443222211 22222 23568999999999988888899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHH--Hhcc--cCcEEEeCcccCCC
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ--QFRE--IETCVECSATTMIQ  163 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~SA~~g~g  163 (507)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+......    +....+..  ....  ..++++|||++|.|
T Consensus        83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g  157 (183)
T cd04152          83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNALSV----SEVEKLLALHELSASTPWHVQPACAIIGEG  157 (183)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccccCCH----HHHHHHhCccccCCCCceEEEEeecccCCC
Confidence            99999999888775 66655543  237999999999998653221    22222221  1111  12578999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      +++++++|.+.+.
T Consensus       158 i~~l~~~l~~~l~  170 (183)
T cd04152         158 LQEGLEKLYEMIL  170 (183)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.89  E-value=3.7e-22  Score=186.09  Aligned_cols=159  Identities=21%  Similarity=0.270  Sum_probs=120.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      ||+++|++|||||||++++++..+...+.++..... ....+....+.+.+|||+|+..+..+...+++.+|++|+|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            699999999999999999999887665544332221 2223333457899999999998888888999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCC-CCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGD-HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      +++.+++.+.. |...+....  .++|+++|+||+|+... ..+ ............++  .+++++||++|.|++++|+
T Consensus        81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v-~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQV-PAKDALSTVELDWN--CGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccc-cHHHHHHHHHhhcC--CcEEEecCCCCCCHHHHHH
Confidence            99999999876 777766542  37999999999999763 333 22222212111222  2689999999999999999


Q ss_pred             HHHHHHc
Q 010548          170 YAQKAVL  176 (507)
Q Consensus       170 ~i~~~i~  176 (507)
                      +|.+.+.
T Consensus       157 ~l~~~~~  163 (198)
T cd04147         157 ELLRQAN  163 (198)
T ss_pred             HHHHHhh
Confidence            9998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04151 Arl1 Arl1 subfamily

Probab=99.89  E-value=2.6e-22  Score=180.10  Aligned_cols=154  Identities=12%  Similarity=0.133  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      ||+++|++|||||||++++..+.+....++......   .+...++++.+|||||+..+..++..+++.+|++|+|+|++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~   77 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE---TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST   77 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE---EEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence            689999999999999999988776543333222221   23345789999999999988888899999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-hc-ccCcEEEeCcccCCCchHHHHH
Q 010548           94 QQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      ++.++......|...++.. ..++|+++|+||+|+.+....   .+....+... .. ...++++|||++|.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  154 (158)
T cd04151          78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW  154 (158)
T ss_pred             CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence            9988877666455444432 247999999999998754211   1111111110 00 0125899999999999999999


Q ss_pred             HHH
Q 010548          171 AQK  173 (507)
Q Consensus       171 i~~  173 (507)
                      |.+
T Consensus       155 l~~  157 (158)
T cd04151         155 LVN  157 (158)
T ss_pred             Hhc
Confidence            864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00876 Ras Ras family

Probab=99.89  E-value=4.2e-22  Score=178.51  Aligned_cols=156  Identities=21%  Similarity=0.354  Sum_probs=123.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      ||+|+|++|||||||++++++..+...+.++.... .....+....+.+.+||+||...+......+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            69999999999999999999888766655543322 12223333467899999999998888888999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      +++.++..+.. |...+....  .++|+++|+||+|+......  ..+....+...++  .+++++||+++.|+++++++
T Consensus        81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG--CPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccccee--cHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHH
Confidence            99999999887 665555443  37999999999999874443  3344556666665  37999999999999999999


Q ss_pred             HHHH
Q 010548          171 AQKA  174 (507)
Q Consensus       171 i~~~  174 (507)
                      |.+.
T Consensus       156 l~~~  159 (160)
T cd00876         156 LVRE  159 (160)
T ss_pred             HHhh
Confidence            9764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.89  E-value=5.7e-22  Score=181.85  Aligned_cols=161  Identities=19%  Similarity=0.209  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      .||+++|++|||||||++++.+..+...+.++.. ..+....+....+.+.+|||||+.++......++..++++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            6899999999999999999999887665444332 233333444456788999999999888888899999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      +++..+++.+...|...++... .+.|+|+|+||+|+...+..  .......+...++  .+++++||++|.|+.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~  157 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV--STEEGKELAESWG--AAFLESSARENENVEEAFEL  157 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc--CHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHH
Confidence            9999999999874444444332 36899999999999765443  2233455566655  36899999999999999999


Q ss_pred             HHHHHcC
Q 010548          171 AQKAVLH  177 (507)
Q Consensus       171 i~~~i~~  177 (507)
                      +.+.+..
T Consensus       158 l~~~~~~  164 (180)
T cd04137         158 LIEEIEK  164 (180)
T ss_pred             HHHHHHH
Confidence            9987743

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.88  E-value=3.9e-22  Score=182.06  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=115.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +.+||+++|++|||||||+++++.+.+....++......   .+...+..+.+|||||+..+...+..+++.+|++++|+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~---~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~   90 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE---EIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI   90 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE---EEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence            468999999999999999999998877654333222221   23345789999999999988888899999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-h-cccCcEEEeCcccCCCchHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVPDV  167 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |++++.++......+...++.. ..++|+++++||+|+.....   .++....+... . ....++++|||++|.||+++
T Consensus        91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            9999999888776444444332 24699999999999875321   11111222100 0 01125899999999999999


Q ss_pred             HHHHHH
Q 010548          168 FYYAQK  173 (507)
Q Consensus       168 ~~~i~~  173 (507)
                      |++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.5e-23  Score=176.96  Aligned_cols=163  Identities=17%  Similarity=0.241  Sum_probs=134.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCee-eCCcc-------c--CCceEEEEEeCCCCccchhhhHH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTR-LPPDF-------Y--PDRVPVTIIDTSSSLENKGKLNE   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~~~~~t-~~~~~-------~--~~~~~~~i~Dt~G~~~~~~~~~~   78 (507)
                      ..-+|.+.+|++||||||++.+++.++|..... ++.-+.. ....+       .  ...+.+++|||+|+++|+++...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            345788899999999999999999999877633 2221111 00001       1  22577899999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      +++.|-+++++||+++..||-++.. |+..++.+  +.+.-|+++|||+|+.+.+.+  .+..+..++.+++-  ||||+
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~V--s~~qa~~La~kygl--PYfET  161 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVV--SEDQAAALADKYGL--PYFET  161 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhh--hHHHHHHHHHHhCC--Ceeee
Confidence            9999999999999999999999997 99998764  668889999999999998887  66778899999985  79999


Q ss_pred             CcccCCCchHHHHHHHHHHcC
Q 010548          157 SATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      ||-+|.||++..+.+...+++
T Consensus       162 SA~tg~Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  162 SACTGTNVEKAVELLLDLVMK  182 (219)
T ss_pred             ccccCcCHHHHHHHHHHHHHH
Confidence            999999999988888776643

>cd00154 Rab Rab family

Probab=99.88  E-value=6.7e-22  Score=176.38  Aligned_cols=155  Identities=23%  Similarity=0.325  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+++|++|||||||++++.+..+.....++.....  ...........+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999887665333222111  22233345688999999999888888899999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.+++.+.. |+..+.... .++|+++|+||+|+......  ..+....+....+  .+++++||+++.|++++++
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~  155 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQFAKENG--LLFFETSAKTGENVEELFQ  155 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHH
Confidence            9999999999887 888887764 57999999999999744333  2345556666543  3799999999999999999


Q ss_pred             HHH
Q 010548          170 YAQ  172 (507)
Q Consensus       170 ~i~  172 (507)
                      +|.
T Consensus       156 ~i~  158 (159)
T cd00154         156 SLA  158 (159)
T ss_pred             HHh
Confidence            875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.88  E-value=5.9e-22  Score=182.70  Aligned_cols=162  Identities=24%  Similarity=0.300  Sum_probs=139.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ..+||+++|.+|||||+|..+++...|...+.++.+ .++....++...+.+.|+||+|++++..+...+++.+|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            468999999999999999999999999999766555 4556667777788999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHh-cC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRR-LE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~-~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |+++++.||+.+.. +...|.+ .. ...|+++||||+|+...+.+  ..++...++..++.  +|+|+||+.+.+++++
T Consensus        82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V--~~eeg~~la~~~~~--~f~E~Sak~~~~v~~~  156 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQV--SEEEGKALARSWGC--AFIETSAKLNYNVDEV  156 (196)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhcccc--CHHHHHHHHHhcCC--cEEEeeccCCcCHHHH
Confidence            99999999999997 6666633 32 35899999999999988777  45567777888874  6999999999999999


Q ss_pred             HHHHHHHHcC
Q 010548          168 FYYAQKAVLH  177 (507)
Q Consensus       168 ~~~i~~~i~~  177 (507)
                      |..|.+.+..
T Consensus       157 F~~L~r~~~~  166 (196)
T KOG0395|consen  157 FYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHh
Confidence            9999998755

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.88  E-value=4.1e-22  Score=180.65  Aligned_cols=156  Identities=20%  Similarity=0.270  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      +|+++|.+|||||||++++.+. +...+.++......  .+...++.+.+|||||+..+..++..+++.+|++|+|||++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s   77 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS   77 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence            4899999999999999999976 44443333322222  33346789999999999989999999999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhh--hhHHHHHHhcccCcEEEeCcccC------CC
Q 010548           94 QQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEE--VMGPIMQQFREIETCVECSATTM------IQ  163 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SA~~g------~g  163 (507)
                      +..+++.+.. |+..+.+..  .++|+++|+||+|+...+......+  ....++.+.+....+++|||++|      .|
T Consensus        78 ~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g  156 (167)
T cd04161          78 DDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS  156 (167)
T ss_pred             chhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence            9999998876 776665432  4799999999999987543201111  11222222222236788999998      89


Q ss_pred             chHHHHHHHH
Q 010548          164 VPDVFYYAQK  173 (507)
Q Consensus       164 i~~l~~~i~~  173 (507)
                      +.+.|+||..
T Consensus       157 ~~~~~~wl~~  166 (167)
T cd04161         157 IVEGLRWLLA  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.88  E-value=5.4e-22  Score=178.21  Aligned_cols=154  Identities=19%  Similarity=0.244  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      ||+++|++|||||||++++.+..+....++...... ...+ ...+.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~   78 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS   78 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence            689999999999999999999887554433221111 1111 34678999999999888888888999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHH-HHhc--ccCcEEEeCcccCCCchHHH
Q 010548           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQFR--EIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ++.++..... |+..+.+.  ..+.|+++|+||+|+......   .+....+. ..+.  ...++++|||++|.|++++|
T Consensus        79 ~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          79 DEARLDESQK-ELKHILKNEHIKGVPVVLLANKQDLPGALTA---EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             cHHHHHHHHH-HHHHHHhchhhcCCCEEEEEECcccccCcCH---HHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9998888876 55544332  247999999999998643211   11111110 1111  11258999999999999999


Q ss_pred             HHHHH
Q 010548          169 YYAQK  173 (507)
Q Consensus       169 ~~i~~  173 (507)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.87  E-value=1.6e-21  Score=194.63  Aligned_cols=220  Identities=19%  Similarity=0.169  Sum_probs=164.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhhhH------
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLN------   77 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------   77 (507)
                      +..+..+||+|+|+||||||||+|.|++..  .++++..+++|   +...+..+++.+.++||+|..+..+..+      
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d--~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeR  289 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRD--RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIER  289 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCC--ceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHH
Confidence            345678999999999999999999999988  88899999988   5567778899999999999987666544      


Q ss_pred             --HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           78 --EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        78 --~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                        ..+++||.+++|+|.+.+.+-.+..  .+.   ....++|+++|.||+|+..+...    .   ..  +...-.+++.
T Consensus       290 s~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~----~---~~--~~~~~~~~i~  355 (454)
T COG0486         290 AKKAIEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL----E---SE--KLANGDAIIS  355 (454)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc----c---hh--hccCCCceEE
Confidence              5789999999999999974444433  222   22347999999999999875332    1   01  1111115899


Q ss_pred             eCcccCCCchHHHHHHHHHHcCC---C-CCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCC
Q 010548          156 CSATTMIQVPDVFYYAQKAVLHP---T-APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPL  230 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~~~---~-~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l  230 (507)
                      +||++|+|++.|.+.|.+.+...   . .....+.++ ...+++..++.+.....+...+.++.+++++.++..+.....
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a~~~~~~~~~~dl~a~dLr~A~~~LgeItG  435 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEALGEITG  435 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHHHhhhhccCChhhhHHHHHHHHHHHHHhhC
Confidence            99999999999999999887544   1 122233444 477888888888888777655889999999999887554433


Q ss_pred             CHHHHHHHHHHHH
Q 010548          231 QPAEIVGVKRVVQ  243 (507)
Q Consensus       231 ~~~~~~~l~~~i~  243 (507)
                      . ...+++++.+.
T Consensus       436 ~-~~~edlLd~IF  447 (454)
T COG0486         436 E-FVSEDLLDEIF  447 (454)
T ss_pred             C-CchHHHHHHHH
Confidence            2 23555555554

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.9e-22  Score=163.23  Aligned_cols=164  Identities=22%  Similarity=0.290  Sum_probs=138.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+|-+|+|+-|||||+|+.++..++|...-|.+..  -.|.-+++...+++++||||+|+++|+...+.+++++-+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            34578999999999999999999999998777555322  1123345667889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ++|||++.+.++..+.. |+...+.. +++..+++++||.|+...+.+  .-++...++.+.+-  .++++||++|.||+
T Consensus        88 lmvyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~qrdv--~yeeak~faeengl--~fle~saktg~nve  162 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQRDV--TYEEAKEFAEENGL--MFLEASAKTGQNVE  162 (215)
T ss_pred             eEEEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhcccC--cHHHHHHHHhhcCe--EEEEecccccCcHH
Confidence            99999999999999987 98887765 467889999999999998887  44567788888875  58999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      +.|-...+.+..
T Consensus       163 dafle~akkiyq  174 (215)
T KOG0097|consen  163 DAFLETAKKIYQ  174 (215)
T ss_pred             HHHHHHHHHHHH
Confidence            999777776643

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.87  E-value=3.9e-23  Score=169.37  Aligned_cols=156  Identities=21%  Similarity=0.287  Sum_probs=130.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           17 VVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        17 ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      ++|++++|||.|+-|+-.+.|...  +.+..-.+. .-++.+..++++++|||+|+++|++....|++.||+.+++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999999887776443  333222222 33455677899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHH
Q 010548           94 QQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~  172 (507)
                      ++.||++... |+.+|.++.. .+.+.++|||||+..++.+  ..+..+.+++.++.  |+.++||++|.||+-.|-.|.
T Consensus        82 nkasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~er~v--~~ddg~kla~~y~i--pfmetsaktg~nvd~af~~ia  156 (192)
T KOG0083|consen   82 NKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHERAV--KRDDGEKLAEAYGI--PFMETSAKTGFNVDLAFLAIA  156 (192)
T ss_pred             cchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchhhcc--ccchHHHHHHHHCC--CceeccccccccHhHHHHHHH
Confidence            9999999997 9999998753 5788999999999887776  45667889999985  799999999999999999998


Q ss_pred             HHHcC
Q 010548          173 KAVLH  177 (507)
Q Consensus       173 ~~i~~  177 (507)
                      +.+..
T Consensus       157 ~~l~k  161 (192)
T KOG0083|consen  157 EELKK  161 (192)
T ss_pred             HHHHH
Confidence            87643

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.87  E-value=2.5e-21  Score=178.29  Aligned_cols=158  Identities=13%  Similarity=0.195  Sum_probs=114.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|.+|||||||++++.+..+....++..+. .  ..+..+++++.+|||||+..+...+..+++.+|++++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~-~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPT-S--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccc-e--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            45689999999999999999999988764322222221 1  12234568899999999988888899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh---------cccCcEEEeCc
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---------REIETCVECSA  158 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~SA  158 (507)
                      +|++++.++..... ++..+.+.  ..++|+++|+||+|+......   ++....+....         .....+++|||
T Consensus        92 vD~~~~~~~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       92 VDAYDKERFAESKR-ELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EECCcHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccCCCCH---HHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            99999998888776 44444321  247999999999998653221   11111110000         01235899999


Q ss_pred             ccCCCchHHHHHHHHH
Q 010548          159 TTMIQVPDVFYYAQKA  174 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~  174 (507)
                      ++|.|+++++++|.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00879 Sar1 Sar1 subfamily

Probab=99.87  E-value=2.5e-21  Score=179.23  Aligned_cols=157  Identities=16%  Similarity=0.278  Sum_probs=115.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+..||+++|++|||||||++++.+..+....++..+ ..  ..+...+..+.+|||||+..+...+..+++.+|++++|
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~-~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHP-TS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCc-ce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            4578999999999999999999998876432222222 11  12334468899999999988888888899999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--------------cccCcE
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--------------REIETC  153 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~  153 (507)
                      +|+++..++..... |+..+.+.  ..+.|+++|+||+|+...  +  ..+.........              .....+
T Consensus        94 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          94 VDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPGA--V--SEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCCC--c--CHHHHHHHhCcccccccccccccccCceeEEE
Confidence            99999988887776 55444332  246999999999998653  1  123333333211              112258


Q ss_pred             EEeCcccCCCchHHHHHHHHH
Q 010548          154 VECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      ++|||++|.|++++|++|.+.
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhh
Confidence            999999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.87  E-value=3.5e-21  Score=172.60  Aligned_cols=153  Identities=15%  Similarity=0.211  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      ||+++|.+|||||||++++++..+....++..... .  .+......+.+|||||+..+...+..+++.+|++++|||++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~   77 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV-E--TVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS   77 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce-E--EEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence            69999999999999999999987433222221111 1  12234688999999999998888999999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH--hcccCcEEEeCcccCCCchHHHH
Q 010548           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ++.++..... |+..+...  ..+.|+++|+||+|+......   ++....+...  .....+++++||++|.|++++|+
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          78 DRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            9999998876 55544332  247999999999998764322   1111111111  11223799999999999999999


Q ss_pred             HHHH
Q 010548          170 YAQK  173 (507)
Q Consensus       170 ~i~~  173 (507)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.86  E-value=3.6e-21  Score=174.12  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=109.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +|+++|++|||||||+++|.+..... .........|+.   ..+...+..+.+|||||+..+...+..+++.+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            58999999999999999998754211 111111111111   12234578999999999998888888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh----c-ccCcEEEeCcccCC
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF----R-EIETCVECSATTMI  162 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~SA~~g~  162 (507)
                      +|++++.++..... |+..+.+.  ..++|+++|+||+|+......    .....+....    + ...+++++||++|.
T Consensus        81 vd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  155 (167)
T cd04160          81 IDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDALSV----EEIKEVFQDKAEEIGRRDCLVLPVSALEGT  155 (167)
T ss_pred             EECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccCCCH----HHHHHHhccccccccCCceEEEEeeCCCCc
Confidence            99999988888776 55544332  247999999999998664221    2222222221    1 11269999999999


Q ss_pred             CchHHHHHHHH
Q 010548          163 QVPDVFYYAQK  173 (507)
Q Consensus       163 gi~~l~~~i~~  173 (507)
                      |+++++++|.+
T Consensus       156 gv~e~~~~l~~  166 (167)
T cd04160         156 GVREGIEWLVE  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.86  E-value=5.7e-21  Score=177.44  Aligned_cols=147  Identities=22%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcc-----cCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDF-----YPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~-----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      +||+++|++|||||||+++++++.|...+.++... .. ....+     ....+.+.+|||+|++++..+...+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999999987765544331 11 11222     1346889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhc--------------------CCCCcEEEEEecccCCCCCCccchh---hhhHH
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRL--------------------EIKVPIIVAGCKLDLRGDHNATSLE---EVMGP  142 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~--------------------~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~  142 (507)
                      +|+|||++++.|++++.. |+..+...                    ..++|+||||||+|+.+++.. ...   .....
T Consensus        81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~-~~~~~~~~~~~  158 (202)
T cd04102          81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES-SGNLVLTARGF  158 (202)
T ss_pred             EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc-chHHHhhHhhh
Confidence            999999999999999985 99988652                    136899999999999776544 222   23446


Q ss_pred             HHHHhcccCcEEEeCcccCCC
Q 010548          143 IMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus       143 ~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      ++++++.  +.++.++++...
T Consensus       159 ia~~~~~--~~i~~~c~~~~~  177 (202)
T cd04102         159 VAEQGNA--EEINLNCTNGRL  177 (202)
T ss_pred             HHHhcCC--ceEEEecCCccc
Confidence            6777775  578888876543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.86  E-value=6.4e-21  Score=198.23  Aligned_cols=214  Identities=19%  Similarity=0.176  Sum_probs=148.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh--------hHH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK--------LNE   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~   78 (507)
                      +..++|+++|.+|||||||+|+|++...  .+++..+++|   ....+..++..+.+|||||+.++...        ...
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~  290 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEER--AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE  290 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence            4568999999999999999999998763  2222223333   12233345778999999998765432        224


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +++.+|++++|+|++++.+++.... |..     ..++|+++|+||+|+...... .         ...  ..+++++||
T Consensus       291 ~~~~aD~il~VvD~s~~~s~~~~~~-l~~-----~~~~piiiV~NK~DL~~~~~~-~---------~~~--~~~~i~iSA  352 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLTEEDDEI-LEE-----LKDKPVIVVLNKADLTGEIDL-E---------EEN--GKPVIRISA  352 (449)
T ss_pred             HHHhCCEEEEEecCCCCCChhHHHH-HHh-----cCCCCcEEEEEhhhccccchh-h---------hcc--CCceEEEEe
Confidence            6899999999999999988776542 332     347899999999999754322 1         111  136899999


Q ss_pred             ccCCCchHHHHHHHHHHcCC-----CCCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCH
Q 010548          159 TTMIQVPDVFYYAQKAVLHP-----TAPLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQP  232 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~~~-----~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~  232 (507)
                      ++|.|+++++++|.+.+...     ........++ ....++.++|.+.........+.++.+++|+.+......... .
T Consensus       353 ktg~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~~~~~~~~~~~~~~a~~l~~a~~~l~~i~G-~  431 (449)
T PRK05291        353 KTGEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERALEGLESGLPLELLAEDLRLALEALGEITG-E  431 (449)
T ss_pred             eCCCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhC-C
Confidence            99999999999999877431     1222223333 366778888887776665555678999999988887554433 3


Q ss_pred             HHHHHHHHHHHh
Q 010548          233 AEIVGVKRVVQE  244 (507)
Q Consensus       233 ~~~~~l~~~i~~  244 (507)
                      ...+++++.|..
T Consensus       432 ~~~e~iLd~iF~  443 (449)
T PRK05291        432 VTSEDLLDRIFS  443 (449)
T ss_pred             CChHHHHHHHHH
Confidence            556666666644

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.85  E-value=1.4e-20  Score=194.61  Aligned_cols=217  Identities=17%  Similarity=0.157  Sum_probs=148.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh--------hH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK--------LN   77 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~   77 (507)
                      ....+||+++|++|||||||+|+|++...  ...+..+++|   ....+..++..+.+|||||+.++...        ..
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~--aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDR--AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCC--cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            34578999999999999999999998752  2223334444   22334456788999999998655432        23


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      .+++.+|++++|||++++.+++..   |+..+...  ++|+++|+||+|+... .       ...+.+.++.  +++++|
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~~--~~piIlV~NK~Dl~~~-~-------~~~~~~~~~~--~~~~vS  342 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF---LIIDLNKS--KKPFILVLNKIDLKIN-S-------LEFFVSSKVL--NSSNLS  342 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH---HHHHHhhC--CCCEEEEEECccCCCc-c-------hhhhhhhcCC--ceEEEE
Confidence            578999999999999998887654   66655543  7899999999998643 1       1223334432  589999


Q ss_pred             cccCCCchHHHHHHHHHHcCC--------CCCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC
Q 010548          158 ATTMIQVPDVFYYAQKAVLHP--------TAPLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA  228 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~~--------~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~  228 (507)
                      |++ .||+++++.+.+.+...        ......+.++ ....++..++.+...........++.+++|+.++......
T Consensus       343 ak~-~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~~~~~~~~~~~~el~a~~l~~a~~~l~~i  421 (442)
T TIGR00450       343 AKQ-LKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQFLSKLDRQLFLDMLVFHLREAINCLGQV  421 (442)
T ss_pred             Eec-CCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            998 69999988888766322        1111222333 3566777777777766655556789999999888875544


Q ss_pred             CCCHHHHHHHHHHHHh
Q 010548          229 PLQPAEIVGVKRVVQE  244 (507)
Q Consensus       229 ~l~~~~~~~l~~~i~~  244 (507)
                      .. ....+++++.|..
T Consensus       422 tG-~~~~ediLd~iFs  436 (442)
T TIGR00450       422 TG-EVVTEDVLDEIFS  436 (442)
T ss_pred             hC-CCCcHHHHHHHHh
Confidence            33 2345666665543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01890 LepA LepA subfamily

Probab=99.85  E-value=1.7e-20  Score=171.77  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCCC-----CCee-----eCCcc---cCCceEEEEEeCCCCccch
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES-------VPEKVPPVH-----APTR-----LPPDF---YPDRVPVTIIDTSSSLENK   73 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~-------~~~~~~~~~-----~~~t-----~~~~~---~~~~~~~~i~Dt~G~~~~~   73 (507)
                      +|+++|++|||||||+++|++..       +...+.+..     .+.+     ....+   ...++.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999999743       111111111     0111     11112   3457889999999999999


Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-Cc
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET  152 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~  152 (507)
                      ..+..+++.+|++|+|+|++++.+...... |... ...  ++|+++|+||+|+.+..    .......+++.++.. ..
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~-~~~--~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~  153 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLA-LEN--NLEIIPVINKIDLPSAD----PERVKQQIEDVLGLDPSE  153 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHH-HHc--CCCEEEEEECCCCCcCC----HHHHHHHHHHHhCCCccc
Confidence            889999999999999999999877766553 4432 233  78999999999986532    122234455554421 24


Q ss_pred             EEEeCcccCCCchHHHHHHHHHH
Q 010548          153 CVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ++++||++|.|+++++++|.+.+
T Consensus       154 ~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         154 AILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEEeeccCCCCHHHHHHHHHhhC
Confidence            89999999999999999998875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.85  E-value=2e-20  Score=169.36  Aligned_cols=152  Identities=21%  Similarity=0.167  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccch----h-----hhHHhhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENK----G-----KLNEELK   81 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~----~-----~~~~~~~   81 (507)
                      +|+++|++|||||||+|+|++..+....   .+.+|...   .+..+++.+.+|||||+....    .     .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAP---YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCC---CCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            7999999999999999999998753221   11222221   223356899999999974211    0     0111123


Q ss_pred             cCCEEEEEEeCCChhhH--HHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           82 RADAVVLTYACNQQSTL--SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~--~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      .+|++|+|+|+++..++  +.... |+..++....++|+++|+||+|+...... .  + ...+... + ..++++|||+
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~--~-~~~~~~~-~-~~~~~~~Sa~  151 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLS-LFEEIKPLFKNKPVIVVLNKIDLLTFEDL-S--E-IEEEEEL-E-GEEVLKISTL  151 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHH-HHHHHHhhcCcCCeEEEEEccccCchhhH-H--H-HHHhhhh-c-cCceEEEEec
Confidence            46899999999987653  44443 78887765557999999999999765433 1  1 2233322 2 2368999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKAV  175 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i  175 (507)
                      +|.|++++++++.+.+
T Consensus       152 ~~~gi~~l~~~l~~~~  167 (168)
T cd01897         152 TEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCCHHHHHHHHHHHh
Confidence            9999999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.85  E-value=1.7e-20  Score=167.33  Aligned_cols=154  Identities=18%  Similarity=0.239  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      .|+++|++|||||||++++.+..+.....++......  .+..+++.+.+|||||+..+...+..+++.+|++++|+|++
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            3899999999999999999999876654432221111  12234588999999999988888999999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHh-c-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH--hcccCcEEEeCcccCCCchHHHH
Q 010548           94 QQSTLSRLSSYWLPELRR-L-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      +..++..... |+..+.. . ..++|+++|+||+|+.+....   ......+...  .....+++++||++|.|++++++
T Consensus        79 ~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          79 DRTALEAAKN-ELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9988887765 4444332 1 247899999999998764322   1111111100  11113689999999999999999


Q ss_pred             HHHH
Q 010548          170 YAQK  173 (507)
Q Consensus       170 ~i~~  173 (507)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.85  E-value=1e-21  Score=169.15  Aligned_cols=168  Identities=16%  Similarity=0.225  Sum_probs=139.9

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (507)
                      |.+.....-+|++|+|..+|||||++.|++.+-|...+..++...-  ..+.+..+.+++.+|||+|++++......|++
T Consensus        12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            4444556679999999999999999999998888776554222111  22333456778899999999999999999999


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      +|.+.++||+.+|+.||+...+ |.+.+.+....+|.++|-||+|+.++..+  ...+.+.+++.+..  .++.+|++..
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds~~--~~~evE~lak~l~~--RlyRtSvked  166 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDSQM--DKGEVEGLAKKLHK--RLYRTSVKED  166 (246)
T ss_pred             cccceEEEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhhhc--chHHHHHHHHHhhh--hhhhhhhhhh
Confidence            9999999999999999999997 99999998889999999999999988766  44556777777654  6899999999


Q ss_pred             CCchHHHHHHHHHHc
Q 010548          162 IQVPDVFYYAQKAVL  176 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~  176 (507)
                      .||..+|.+|+..+.
T Consensus       167 ~NV~~vF~YLaeK~~  181 (246)
T KOG4252|consen  167 FNVMHVFAYLAEKLT  181 (246)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999999999988764

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.8e-21  Score=169.67  Aligned_cols=86  Identities=28%  Similarity=0.464  Sum_probs=83.0

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      .++.|||++||++|||||||+.||.++.|...|..|+|+++..+.+.+.|+.++++|||||||+||+++.  .+|||+||
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit--~syYR~ah   83 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAH   83 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhh--HhhccCCC
Confidence            4578999999999999999999999999999999999999999999999999999999999999999998  79999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      +||+|||+
T Consensus        84 Gii~vyDi   91 (205)
T KOG0084|consen   84 GIIFVYDI   91 (205)
T ss_pred             eEEEEEEc
Confidence            99999996

>cd04155 Arl3 Arl3 subfamily

Probab=99.84  E-value=3.7e-20  Score=168.59  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=111.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+.+||+++|++|||||||++++.+..+....++.  +.+. ..+...+..+.+|||+|...+...+..+++.+|++++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~--g~~~-~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDISHITPTQ--GFNI-KTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCC--Ccce-EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            345799999999999999999999987653322221  1111 1222346889999999988888888889999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc------cCcEEEeCcccC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTM  161 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~g  161 (507)
                      |+|+++..++......+...++.. ..++|+++++||+|+......       ..+...++.      ..+++++||++|
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA-------EEIAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH-------HHHHHHcCCcccCCCeEEEEEeECCCC
Confidence            999999888887765333333321 236999999999998654222       112222221      114789999999


Q ss_pred             CCchHHHHHHHH
Q 010548          162 IQVPDVFYYAQK  173 (507)
Q Consensus       162 ~gi~~l~~~i~~  173 (507)
                      .|++++|++|.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.84  E-value=6.1e-20  Score=166.49  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCc-eEEEEEeCCCCcc----chhhhHH---hhcc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDR-VPVTIIDTSSSLE----NKGKLNE---ELKR   82 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~-~~~~i~Dt~G~~~----~~~~~~~---~~~~   82 (507)
                      .|+++|++|||||||+|+|.+....   +...+..|..   ..+...+ ..+.+|||||+.+    ...+...   .++.
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~---v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK---IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc---ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence            5899999999999999999976531   1111112211   1122233 4899999999742    2222333   3456


Q ss_pred             CCEEEEEEeCCCh-hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           83 ADAVVLTYACNQQ-STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        83 ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +|++++|+|++++ .+++.+.. |.+.+....   .++|+++|+||+|+......   .+....+..... ..+++++||
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~~~Sa  153 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKELW-GKPVFPISA  153 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhCC-CCCEEEEec
Confidence            9999999999999 78888875 888877653   36899999999998764333   222333333321 136899999


Q ss_pred             ccCCCchHHHHHHHHH
Q 010548          159 TTMIQVPDVFYYAQKA  174 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~  174 (507)
                      +++.|+++++++|.+.
T Consensus       154 ~~~~gi~~l~~~i~~~  169 (170)
T cd01898         154 LTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00436 era GTP-binding protein Era

Probab=99.84  E-value=8.8e-20  Score=178.20  Aligned_cols=162  Identities=18%  Similarity=0.183  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh--------hhHHhhcc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG--------KLNEELKR   82 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~   82 (507)
                      +|+++|+||||||||+|+|++.++.  ..+..+++|..   ......+.++.+|||||......        ....+++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~--~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKIS--ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEe--ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6999999999999999999998742  22222333311   12223456799999999764321        12356899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +|++++|+|+++..+..   ..+...++..  ++|+++|+||+|+.....   .......+....+ ..+++++||++|.
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~v~~iSA~~g~  150 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK---LLPLIDKYAILED-FKDIVPISALTGD  150 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH---HHHHHHHHHhhcC-CCceEEEecCCCC
Confidence            99999999999876664   2366666665  799999999999964321   1222333333332 2368999999999


Q ss_pred             CchHHHHHHHHHHcCCCCCCCccch
Q 010548          163 QVPDVFYYAQKAVLHPTAPLFDHDE  187 (507)
Q Consensus       163 gi~~l~~~i~~~i~~~~~~~~~~~~  187 (507)
                      |++++++.|.+.+.. .++.+....
T Consensus       151 gi~~L~~~l~~~l~~-~~~~~~~~~  174 (270)
T TIGR00436       151 NTSFLAAFIEVHLPE-GPFRYPEDY  174 (270)
T ss_pred             CHHHHHHHHHHhCCC-CCCCCCCcc
Confidence            999999999887633 334454433

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04171 SelB SelB subfamily

Probab=99.83  E-value=4.4e-20  Score=166.13  Aligned_cols=158  Identities=16%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc---ccCC-ceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD---FYPD-RVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~---~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      +.|+++|++|||||||+++|++...........+++|+...   +... +..+.+|||||++.+......+++.+|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            36899999999999999999974311111111112221111   1122 6789999999998887767778899999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc-ccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l  167 (507)
                      |+|+++....+...  .+..++... .+|+++|+||+|+....................+ ...+++++||++|.|++++
T Consensus        81 V~d~~~~~~~~~~~--~~~~~~~~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (164)
T cd04171          81 VVAADEGIMPQTRE--HLEILELLG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL  157 (164)
T ss_pred             EEECCCCccHhHHH--HHHHHHHhC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence            99998732111111  222233331 3499999999999754211001122222222210 1237999999999999999


Q ss_pred             HHHHHH
Q 010548          168 FYYAQK  173 (507)
Q Consensus       168 ~~~i~~  173 (507)
                      ++.+.+
T Consensus       158 ~~~l~~  163 (164)
T cd04171         158 KEYLDE  163 (164)
T ss_pred             HHHHhh
Confidence            998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=1.9e-19  Score=170.24  Aligned_cols=158  Identities=17%  Similarity=0.209  Sum_probs=117.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh--------hHH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK--------LNE   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~   78 (507)
                      ++.-.|+|+|+||||||||+|++++.+  .++.+..+.+|   +..-+..++.++.++||||..+....        ...
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~K--isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQK--ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCc--eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            344679999999999999999999999  66666666666   44445566889999999998754332        235


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      .+.++|+++||+|++.+....+  +..++.+++.  +.|+++++||+|.......  .......+...+. ...++++||
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~-f~~ivpiSA  154 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLP-FKEIVPISA  154 (298)
T ss_pred             HhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHHH--HHHHHHHHHhhCC-cceEEEeec
Confidence            7899999999999998644433  3366667663  7899999999998765432  1222333333333 337899999


Q ss_pred             ccCCCchHHHHHHHHHHc
Q 010548          159 TTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~  176 (507)
                      ++|.|++.|.+.+...+.
T Consensus       155 ~~g~n~~~L~~~i~~~Lp  172 (298)
T COG1159         155 LKGDNVDTLLEIIKEYLP  172 (298)
T ss_pred             cccCCHHHHHHHHHHhCC
Confidence            999999999999887753

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.83  E-value=2.7e-20  Score=169.84  Aligned_cols=159  Identities=16%  Similarity=0.262  Sum_probs=119.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|..|+|||||++++..+......|+.....   ..+...++.+.+||.+|+..++..++.+++.+|++|||
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~---~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV   88 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI---EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV   88 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE---EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc---ceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence            678999999999999999999999766433233221111   12334678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHH--HHhc--ccCcEEEeCcccCCCc
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR--EIETCVECSATTMIQV  164 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~SA~~g~gi  164 (507)
                      +|+++.+.+......+...+... ..++|+++++||+|+.+....    +++....  ..+.  ....++.|||.+|+|+
T Consensus        89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~----~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE----EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH----HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh----hHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            99999988888877555555432 247999999999998765322    1122111  1121  2236899999999999


Q ss_pred             hHHHHHHHHHH
Q 010548          165 PDVFYYAQKAV  175 (507)
Q Consensus       165 ~~l~~~i~~~i  175 (507)
                      .+.++||.+.+
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK15494 era GTPase Era; Provisional

Probab=99.83  E-value=1.5e-19  Score=181.45  Aligned_cols=168  Identities=19%  Similarity=0.223  Sum_probs=113.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccc-hhh----h---HH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLEN-KGK----L---NE   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~-~~~----~---~~   78 (507)
                      .+.++|+++|++|||||||+|+|++.++...  +..+.+|   +...+..++.++.+|||||+.+. ..+    .   ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv--s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV--TPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeec--cCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            3456999999999999999999999876321  1122222   11223345678999999998532 221    1   13


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +++.||++|+|+|.++  ++......|+..++..  +.|+++|+||+|+... .   . ...............++++||
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-~---~-~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-Y---L-NDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-c---H-HHHHHHHHhcCCCcEEEEEec
Confidence            5789999999999765  3555544477777665  6788899999998643 1   1 223333333332236899999


Q ss_pred             ccCCCchHHHHHHHHHHcCCCCCCCccchhc
Q 010548          159 TTMIQVPDVFYYAQKAVLHPTAPLFDHDEQT  189 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~~~~~~~~~~~~~~  189 (507)
                      ++|.|+++++++|.+.+. +.++.|......
T Consensus       199 ktg~gv~eL~~~L~~~l~-~~~~~~~~~~~t  228 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAK-ISPWLYAEDDIT  228 (339)
T ss_pred             cCccCHHHHHHHHHHhCC-CCCCCCCCCCCC
Confidence            999999999999988764 344555544433

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.83  E-value=1e-19  Score=164.58  Aligned_cols=154  Identities=17%  Similarity=0.125  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccC---CceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYP---DRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .|+|+|++|||||||+++|.+..+.....+   ..+..   ..+..   .+..+.+|||||+..+...+..+++.+|+++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il   78 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAG---GITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAI   78 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCC---CeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEE
Confidence            589999999999999999998876543211   11211   11122   3678999999999888888888899999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHH----HhcccCcEEEeCcccCCC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ----QFREIETCVECSATTMIQ  163 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~SA~~g~g  163 (507)
                      +|+|+++....+...  .+..++..  ++|+++|+||+|+...... ........+..    ..+...+++++||++|.|
T Consensus        79 ~v~d~~~~~~~~~~~--~~~~~~~~--~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (168)
T cd01887          79 LVVAADDGVMPQTIE--AIKLAKAA--NVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG  153 (168)
T ss_pred             EEEECCCCccHHHHH--HHHHHHHc--CCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence            999999854333222  33344444  7899999999998753211 11122222211    122234799999999999


Q ss_pred             chHHHHHHHHHH
Q 010548          164 VPDVFYYAQKAV  175 (507)
Q Consensus       164 i~~l~~~i~~~i  175 (507)
                      +.+++++|.+..
T Consensus       154 i~~l~~~l~~~~  165 (168)
T cd01887         154 IDDLLEAILLLA  165 (168)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998753

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.82  E-value=4.6e-20  Score=162.35  Aligned_cols=135  Identities=18%  Similarity=0.196  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc-----cchhhhHHhhccCCEEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL-----ENKGKLNEELKRADAVVL   88 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~-----~~~~~~~~~~~~ad~il~   88 (507)
                      ||+++|++|||||||+|+|++..+.  +.+     |...++.     -.+|||||..     .+..+. ..++++|++++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~-----t~~~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil   68 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKK-----TQAVEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIAL   68 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccc-----ceeEEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence            8999999999999999999987642  221     2222222     1689999973     122222 35899999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      |||++++.++...  .|...+     ..|+++|+||+|+.+. ..  ..+....+.+..+. .+++++||++|.|++++|
T Consensus        69 v~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        69 VQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-DV--DIERAKELLETAGA-EPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-cc--CHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHH
Confidence            9999999887653  254432     3599999999998653 22  22334455555443 268999999999999999


Q ss_pred             HHHH
Q 010548          169 YYAQ  172 (507)
Q Consensus       169 ~~i~  172 (507)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            8874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=2.3e-19  Score=178.85  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=111.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc---c-CCceEEEEEeCCCCccch----h---hhHHhhc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF---Y-PDRVPVTIIDTSSSLENK----G---KLNEELK   81 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~---~-~~~~~~~i~Dt~G~~~~~----~---~~~~~~~   81 (507)
                      ..|+|||.||||||||+|+|++.+.  . ....+.+|....+   . .+..++.+|||||+.+..    .   .+..+++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~--~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie  235 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKP--K-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE  235 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCC--c-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence            4699999999999999999998652  2 1222233422221   1 245679999999975321    1   2234677


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      .++++|+|+|+++..+++++.. |..++..+.+   ++|+++|+||+|+......  ..+....+....+  .++++|||
T Consensus       236 ~a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~--~~i~~iSA  310 (335)
T PRK12299        236 RTRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG--GPVFLISA  310 (335)
T ss_pred             hcCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC--CCEEEEEc
Confidence            8999999999998888888875 8888877542   6899999999999764332  1222333333333  26899999


Q ss_pred             ccCCCchHHHHHHHHHHc
Q 010548          159 TTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~  176 (507)
                      +++.||++++++|.+.+.
T Consensus       311 ktg~GI~eL~~~L~~~l~  328 (335)
T PRK12299        311 VTGEGLDELLRALWELLE  328 (335)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.81  E-value=5.6e-20  Score=161.80  Aligned_cols=145  Identities=17%  Similarity=0.207  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh------hhHHhh--c
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K   81 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~   81 (507)
                      ++|+++|.||||||||||+|++.+..   .+..+++|..   ..+...+..+.++|+||......      ....++  .
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~---v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~   77 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK---VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSE   77 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE---EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce---ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence            58999999999999999999998832   2334445522   33444568999999999643222      223343  6


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ..|++++|+|+++.+  .++  ++..++.+.  ++|+++|+||+|....... .  .....+.+.++.  |++++||+++
T Consensus        78 ~~D~ii~VvDa~~l~--r~l--~l~~ql~e~--g~P~vvvlN~~D~a~~~g~-~--id~~~Ls~~Lg~--pvi~~sa~~~  146 (156)
T PF02421_consen   78 KPDLIIVVVDATNLE--RNL--YLTLQLLEL--GIPVVVVLNKMDEAERKGI-E--IDAEKLSERLGV--PVIPVSARTG  146 (156)
T ss_dssp             SSSEEEEEEEGGGHH--HHH--HHHHHHHHT--TSSEEEEEETHHHHHHTTE-E--E-HHHHHHHHTS---EEEEBTTTT
T ss_pred             CCCEEEEECCCCCHH--HHH--HHHHHHHHc--CCCEEEEEeCHHHHHHcCC-E--ECHHHHHHHhCC--CEEEEEeCCC
Confidence            899999999998753  222  255666666  7999999999998765443 2  235667777774  7999999999


Q ss_pred             CCchHHHHHH
Q 010548          162 IQVPDVFYYA  171 (507)
Q Consensus       162 ~gi~~l~~~i  171 (507)
                      +|++++++.|
T Consensus       147 ~g~~~L~~~I  156 (156)
T PF02421_consen  147 EGIDELKDAI  156 (156)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHhhC
Confidence            9999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PLN00023 GTP-binding protein; Provisional

Probab=99.81  E-value=2.8e-19  Score=173.92  Aligned_cols=141  Identities=23%  Similarity=0.270  Sum_probs=110.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCccc-------------CCceEEEEEeCCCCccc
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFY-------------PDRVPVTIIDTSSSLEN   72 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~-------------~~~~~~~i~Dt~G~~~~   72 (507)
                      .....+||+|+|+.|||||||+++|+++.|...+.++... .. ..+.+.             ...+.+.||||+|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            3456799999999999999999999999887665444322 21 112221             24578999999999999


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-------------CCCcEEEEEecccCCCCCC--cc--c
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-------------IKVPIIVAGCKLDLRGDHN--AT--S  135 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-------------~~~piilv~NK~Dl~~~~~--~~--~  135 (507)
                      ..++..+++.+|++|+|||++++.+++++.. |++.+....             .++|++|||||+|+...+.  ..  .
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            9999999999999999999999999999986 999988652             2589999999999976432  10  1


Q ss_pred             hhhhhHHHHHHhcc
Q 010548          136 LEEVMGPIMQQFRE  149 (507)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (507)
                      ..+.+..++++.+.
T Consensus       176 ~~e~a~~~A~~~g~  189 (334)
T PLN00023        176 LVDAARQWVEKQGL  189 (334)
T ss_pred             cHHHHHHHHHHcCC
Confidence            35677888887764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=5.7e-19  Score=176.05  Aligned_cols=159  Identities=21%  Similarity=0.227  Sum_probs=125.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-----------hh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-----------KL   76 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~   76 (507)
                      ..+||+|+|+||||||||+|+|++..  ..+....+++|   +...+..++.++.++||+|..+-..           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgee--R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEE--RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCc--eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            46999999999999999999999988  66777777777   5566667789999999999753221           22


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc--CcEE
Q 010548           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ETCV  154 (507)
Q Consensus        77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~  154 (507)
                      ..++..||++++|+|++.+.+-++..  +...+.+.  ++++++|.||.|+...... ..++....+...++..  .+.+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~~--g~~~vIvvNKWDl~~~~~~-~~~~~k~~i~~~l~~l~~a~i~  329 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLR--IAGLIEEA--GRGIVIVVNKWDLVEEDEA-TMEEFKKKLRRKLPFLDFAPIV  329 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHHc--CCCeEEEEEccccCCchhh-HHHHHHHHHHHHhccccCCeEE
Confidence            36889999999999999997776655  88888887  8999999999999876333 3333334444444432  3789


Q ss_pred             EeCcccCCCchHHHHHHHHHHc
Q 010548          155 ECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      .+||++|.|+.++|+.+.+...
T Consensus       330 ~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         330 FISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EEEecCCCChHHHHHHHHHHHH
Confidence            9999999999999999987653

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.80  E-value=9.7e-19  Score=165.62  Aligned_cols=167  Identities=25%  Similarity=0.394  Sum_probs=126.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+++|++|||||||+++|.++.+...++++...-.......  ...+++.+|||+|++++...+..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            348999999999999999999999998877665433222221221  226889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCcc----------chhhhhHHHHHHh--cccCcEEE
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNAT----------SLEEVMGPIMQQF--REIETCVE  155 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~--~~~~~~~~  155 (507)
                      |+|.++..++..+...|...++.... +.|+++|+||+|+.......          .............  ... .+++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  162 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLE  162 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeE
Confidence            99999977777777779999988763 69999999999998864210          0111111111111  222 3899


Q ss_pred             eCcc--cCCCchHHHHHHHHHHcCC
Q 010548          156 CSAT--TMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       156 ~SA~--~g~gi~~l~~~i~~~i~~~  178 (507)
                      +||+  .+.+|.++|..+.+.+...
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHh
Confidence            9999  9999999999998877543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.80  E-value=1.2e-18  Score=154.85  Aligned_cols=155  Identities=17%  Similarity=0.224  Sum_probs=113.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC--CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP--PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|.+|+|||||++++.+..+.....+........  .......+.+.+|||||+..+........+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            3799999999999999999999988544433211111122  12222237899999999988888888889999999999


Q ss_pred             EeCCCh-hhHHHHHHhHHHHHHhcCC-CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQ-STLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~-~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|.... .++......|...+..... +.|+++|+||+|+....    ............+.. +++++||++|.|+.++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~-~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGE-PIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----hhHHHHHHHhhccCC-ceEEeecCCCCCHHHH
Confidence            999887 6676665446666665544 78999999999997643    122333333444433 6999999999999999


Q ss_pred             HHHH
Q 010548          168 FYYA  171 (507)
Q Consensus       168 ~~~i  171 (507)
                      +++|
T Consensus       156 ~~~l  159 (161)
T TIGR00231       156 FKIV  159 (161)
T ss_pred             HHHh
Confidence            9886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK04213 GTP-binding protein; Provisional

Probab=99.80  E-value=3.5e-19  Score=166.47  Aligned_cols=155  Identities=19%  Similarity=0.189  Sum_probs=100.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-cccCCceEEEEEeCCCC-----------ccchhhh
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DFYPDRVPVTIIDTSSS-----------LENKGKL   76 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~i~Dt~G~-----------~~~~~~~   76 (507)
                      ....++|+++|++|||||||+|+|.+..+....   .++++... .+...  .+.+|||||.           +.+...+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~---~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK---RPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCC---CCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            445689999999999999999999987754322   22333221 12122  6899999994           3344444


Q ss_pred             HHhh----ccCCEEEEEEeCCChhhHH---------HHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH
Q 010548           77 NEEL----KRADAVVLTYACNQQSTLS---------RLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI  143 (507)
Q Consensus        77 ~~~~----~~ad~il~V~D~~~~~s~~---------~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  143 (507)
                      ..++    ..++++++|+|.++.....         .....+...+...  ++|+++|+||+|+.+..     .+....+
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-----~~~~~~~  153 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-----DEVLDEI  153 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-----HHHHHHH
Confidence            4444    3467888999876532210         0111133444443  79999999999986532     2234445


Q ss_pred             HHHhccc-------CcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          144 MQQFREI-------ETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       144 ~~~~~~~-------~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ...++..       .++++|||++| |+++++++|.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            5555421       14799999999 99999999988764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=5e-19  Score=186.04  Aligned_cols=157  Identities=19%  Similarity=0.115  Sum_probs=109.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc----------chhh-h
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE----------NKGK-L   76 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~   76 (507)
                      ..+||+|+|++|||||||+|+|++..+.  .....+++|.   ...+..++..+.+|||||...          +... .
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~--~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERS--VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcc--cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999988742  1222233331   122334566789999999632          1111 1


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEE
Q 010548           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV  154 (507)
Q Consensus        77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (507)
                      ..+++.||++|+|+|++++.++.++.  ++..+...  ++|+|+|+||+|+......   ......+...+..  ..+++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~~--~~piIiV~NK~Dl~~~~~~---~~~~~~i~~~l~~~~~~~~~  360 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR--VLSMVIEA--GRALVLAFNKWDLVDEDRR---YYLEREIDRELAQVPWAPRV  360 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChhHH---HHHHHHHHHhcccCCCCCEE
Confidence            24678999999999999998888875  66666654  7999999999999753211   1111222222221  24789


Q ss_pred             EeCcccCCCchHHHHHHHHHHc
Q 010548          155 ECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +|||++|.||+++|+.+.+.+.
T Consensus       361 ~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        361 NISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988653

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.80  E-value=7.5e-19  Score=161.97  Aligned_cols=158  Identities=19%  Similarity=0.153  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------------CCeeeC---CcccCCceEEEEEeCCCCccchhhhH
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-------------APTRLP---PDFYPDRVPVTIIDTSSSLENKGKLN   77 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-------------~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~   77 (507)
                      +|+|+|.+|+|||||+|+|++...........             .+.+..   ..+...+..+.+|||||...+.....
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            48999999999999999999887644332211             111111   12223467899999999988888888


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc---------
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------  148 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------  148 (507)
                      .+++.+|++++|+|++++.+.....  ++..++..  ++|+++|+||+|+.................+..+         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            8999999999999999876554433  55555553  7999999999999863222011222333333322         


Q ss_pred             ---ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          149 ---EIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       149 ---~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                         ...+++++||++|.|++++++++.+.+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               134789999999999999999998876

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01878 HflX HflX subfamily

Probab=99.80  E-value=7.6e-19  Score=164.58  Aligned_cols=154  Identities=21%  Similarity=0.198  Sum_probs=105.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccch--hh------hHHh
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK--GK------LNEE   79 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~--~~------~~~~   79 (507)
                      ...++|+|+|++|||||||+|++++..+...  ..++.........+ .+...+.+|||||.....  ..      ....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL-PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe-cCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            3457999999999999999999998764221  11111111111222 123489999999973211  11      1123


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +..+|++++|+|++++.++..... |.+.++... .++|+++|+||+|+......    .   ......  ..+++++||
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~----~---~~~~~~--~~~~~~~Sa  187 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIET-VEKVLKELGAEDIPMILVLNKIDLLDDEEL----E---ERLEAG--RPDAVFISA  187 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcCcCCCCEEEEEEccccCChHHH----H---HHhhcC--CCceEEEEc
Confidence            678999999999999988877654 777776643 36899999999999764322    1   122222  236899999


Q ss_pred             ccCCCchHHHHHHHHH
Q 010548          159 TTMIQVPDVFYYAQKA  174 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~  174 (507)
                      ++|.|+++++++|.+.
T Consensus       188 ~~~~gi~~l~~~L~~~  203 (204)
T cd01878         188 KTGEGLDELLEAIEEL  203 (204)
T ss_pred             CCCCCHHHHHHHHHhh
Confidence            9999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.79  E-value=1.5e-18  Score=161.26  Aligned_cols=150  Identities=14%  Similarity=0.144  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc--CCCCCCCC--CC---------CCCee---eCCcccCCceEEEEEeCCCCccchhhh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAAT--ESVPEKVP--PV---------HAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKL   76 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~--~~~~~~~~--~~---------~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~   76 (507)
                      .+|+++|++|||||||+++|+.  +.+.....  ..         ..+.+   ....+..+++.+.+|||||++++....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  44433321  00         01111   112344567899999999999999999


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-----cC
Q 010548           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IE  151 (507)
Q Consensus        77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~  151 (507)
                      ..+++.+|++++|+|+++... .... .++..+...  ++|+++|+||+|+...+.. ...+....+...++.     -.
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~~-~~~~-~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  157 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGPM-PQTR-FVLKKALEL--GLKPIVVINKIDRPDARPE-EVVDEVFDLFIELGATEEQLDF  157 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCcc-HHHH-HHHHHHHHc--CCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHhCCccccCcc
Confidence            999999999999999988532 2222 244544444  7899999999999754322 122333333322211     12


Q ss_pred             cEEEeCcccCCCchHH
Q 010548          152 TCVECSATTMIQVPDV  167 (507)
Q Consensus       152 ~~~~~SA~~g~gi~~l  167 (507)
                      +++++||++|.|+.++
T Consensus       158 ~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         158 PVLYASAKNGWASLNL  173 (194)
T ss_pred             CEEEeehhcccccccc
Confidence            7899999999887554

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.79  E-value=1.7e-18  Score=154.86  Aligned_cols=144  Identities=15%  Similarity=0.136  Sum_probs=101.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh------hhHHhhc--cCCE
Q 010548           17 VVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG------KLNEELK--RADA   85 (507)
Q Consensus        17 ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~ad~   85 (507)
                      |+|++|||||||+|++++..+....   .+++|..   ..+...+..+.+|||||+..+..      +...++.  .+|+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~   77 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGN---WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL   77 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccC---CCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence            5899999999999999987633221   1222211   12333457899999999876554      2445554  9999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +++|+|+++.....    .|...+.+.  ++|+++|+||+|+.+....   ......+...++.  +++++||++|.|+.
T Consensus        78 vi~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~~--~~~~iSa~~~~~~~  146 (158)
T cd01879          78 IVNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRGI---KIDLDKLSELLGV--PVVPTSARKGEGID  146 (158)
T ss_pred             EEEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccccc---hhhHHHHHHhhCC--CeEEEEccCCCCHH
Confidence            99999998864422    255555554  7999999999999765433   1223455555553  69999999999999


Q ss_pred             HHHHHHHHH
Q 010548          166 DVFYYAQKA  174 (507)
Q Consensus       166 ~l~~~i~~~  174 (507)
                      ++++.+.+.
T Consensus       147 ~l~~~l~~~  155 (158)
T cd01879         147 ELKDAIAEL  155 (158)
T ss_pred             HHHHHHHHH
Confidence            999998775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.79  E-value=1.1e-18  Score=175.42  Aligned_cols=152  Identities=20%  Similarity=0.189  Sum_probs=105.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCC-CCCCCeeeCCcccCCceEEEEEeCCCCcc--chhhh------HHhh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-KVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLE--NKGKL------NEEL   80 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~-~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~--~~~~~------~~~~   80 (507)
                      ..++|+++|.+|||||||+|+|++..+.. ..+ ++...++....+ .++..+.+|||+|...  .....      ...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~-~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDL-PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEe-CCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence            34899999999999999999999976422 222 222223322222 2456899999999732  11111      1357


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ..||++++|+|++++.+.+.+.. |...++... .++|+++|+||+|+......       ......   ..++++|||+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-------~~~~~~---~~~~i~iSAk  335 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPRI-------ERLEEG---YPEAVFVSAK  335 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHhH-------HHHHhC---CCCEEEEEcc
Confidence            89999999999999988877654 666665543 37899999999998653211       111111   1258999999


Q ss_pred             cCCCchHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKA  174 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~  174 (507)
                      +|.|++++++.|.+.
T Consensus       336 tg~GI~eL~~~I~~~  350 (351)
T TIGR03156       336 TGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999998653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.79  E-value=4.1e-19  Score=150.57  Aligned_cols=85  Identities=27%  Similarity=0.420  Sum_probs=81.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||++||.+|||||||+.+|+.+.|....+.|+|.+|.++.+.++|+..++-|||||||+||+++.  +.|||+|.+
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT--pSyyRgaqG   86 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT--PSYYRGAQG   86 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC--HhHhccCce
Confidence            456999999999999999999999999999999999999999999999999999999999999999998  799999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +|+|||+
T Consensus        87 iIlVYDV   93 (209)
T KOG0080|consen   87 IILVYDV   93 (209)
T ss_pred             eEEEEEc
Confidence            9999996

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=1.6e-18  Score=169.33  Aligned_cols=227  Identities=13%  Similarity=0.116  Sum_probs=156.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCC--------------eeeC---CcccCCceEEEEEeCCCCccchhh
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAP--------------TRLP---PDFYPDRVPVTIIDTSSSLENKGK   75 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~--------------~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~   75 (507)
                      +|+|+|++|+|||||+++|+.......... ...+              .++.   ..+.++++.+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            589999999999999999986432211110 0011              1111   123356789999999998887777


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      ...+++.+|++++|+|++++.......  .+..+...  ++|+++++||+|+...    ........+...++..+-.+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~--~~~~~~~~--~~p~iivvNK~D~~~~----~~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEK--LWEFADEA--GIPRIIFINKMDRERA----DFDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCccCCC----CHHHHHHHHHHHhCCCeEEEE
Confidence            888999999999999999876554333  34445555  7899999999998764    234455666666765333466


Q ss_pred             eCcccCCCchHHHHHHHHHHcCCCC-CCC-----ccchhcccHHHHHHHHHHHhhccCC------CCCccChhhhHHHHh
Q 010548          156 CSATTMIQVPDVFYYAQKAVLHPTA-PLF-----DHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNEFQV  223 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~~~~~-~~~-----~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~~~~  223 (507)
                      ++..+|.|+..+.+.+......... ...     .........+++..|.+.....|+.      +++.++.+|+....+
T Consensus       153 ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~  232 (268)
T cd04170         153 LPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLR  232 (268)
T ss_pred             ecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence            7789999998888777665432211 000     0111112234455555555666654      578899999998888


Q ss_pred             H----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548          224 K----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (507)
Q Consensus       224 ~----------~~~~~l~~~~~~~l~~~i~~~~~~  248 (507)
                      +          +++++....|++.+++.+.+.+|+
T Consensus       233 ~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~  267 (268)
T cd04170         233 RALRAGLLVPVLCGSALTNIGVRELLDALVHLLPS  267 (268)
T ss_pred             HHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence            6          899999999999999999999885

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01895 EngA2 EngA2 subfamily

Probab=99.78  E-value=4.1e-18  Score=154.46  Aligned_cols=156  Identities=22%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-----------hhH
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-----------KLN   77 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~   77 (507)
                      .++|+++|++|+|||||+|+|++..+...  ...++++   ....+...+..+.+|||||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIV--SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceec--cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            47999999999999999999998763221  1111122   1122333456789999999753310           112


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEEE
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVE  155 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  155 (507)
                      .+++.+|++++|+|++++.+.....  +...+...  ++|+++|+||+|+...... ........+...++.  ..++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR--IAGLILEE--GKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHHhc--CCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEE
Confidence            4578999999999999987766543  55555544  6899999999999765322 222223344444432  237999


Q ss_pred             eCcccCCCchHHHHHHHHH
Q 010548          156 CSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~  174 (507)
                      +||+++.|++++++.+.+.
T Consensus       155 ~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCCCHHHHHHHHHHh
Confidence            9999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.78  E-value=1.4e-18  Score=155.80  Aligned_cols=140  Identities=17%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccch----hhhHHhhccCCEEEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK----GKLNEELKRADAVVLT   89 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~ad~il~V   89 (507)
                      +|+++|++|||||||+|+|.+... ..  .    .+....+...    .+|||||.....    ......++++|++++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~~--~----~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v   71 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-LA--R----KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV   71 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-cC--c----cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence            799999999999999999886541 11  1    1111222222    269999973222    2223457899999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      +|+++..++..  . |+..+   ..++|+++++||+|+....     .+....+.++.+...+++++||++|.|++++|+
T Consensus        72 ~d~~~~~s~~~--~-~~~~~---~~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         72 HGANDPESRLP--A-GLLDI---GVSKRQIAVISKTDMPDAD-----VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EeCCCcccccC--H-HHHhc---cCCCCeEEEEEccccCccc-----HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            99998876532  1 33332   2368999999999986521     233445555665434899999999999999999


Q ss_pred             HHHHHH
Q 010548          170 YAQKAV  175 (507)
Q Consensus       170 ~i~~~i  175 (507)
                      .+.+.+
T Consensus       141 ~l~~~~  146 (158)
T PRK15467        141 YLASLT  146 (158)
T ss_pred             HHHHhc
Confidence            998765

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.78  E-value=5.4e-18  Score=144.72  Aligned_cols=162  Identities=14%  Similarity=0.188  Sum_probs=119.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.++|.|+|..|+||||++++|.+.......|+.....+   ....+++++++||.+|+...++.++.|+..+|++|+|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik---tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK---TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE---EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            4589999999999999999999998773222222111111   2335689999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchh--hhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|++++..+++....+...+... -.+.|+++++||.|+...-......  .....+++...  .+++.|||.+|+++.+
T Consensus        91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~--~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH--WRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC--ceEEEEeccccccHHH
Confidence            99999988887766454444432 2368999999999998543220111  22233332222  3789999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      -++|+...+.
T Consensus       169 gidWL~~~l~  178 (185)
T KOG0073|consen  169 GIDWLCDDLM  178 (185)
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>cd01894 EngA1 EngA1 subfamily

Probab=99.78  E-value=2.1e-18  Score=153.95  Aligned_cols=145  Identities=15%  Similarity=0.102  Sum_probs=101.0

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchh--------hhHHhhccCC
Q 010548           16 VVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKG--------KLNEELKRAD   84 (507)
Q Consensus        16 ~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ad   84 (507)
                      +++|.+|||||||+|+|++....  .....+.+|.   .......+..+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDA--IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEE--eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999987521  1111122221   122234567899999999877543        3345688999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      ++++|+|+.++.+.....  +...++..  ++|+++|+||+|+......       ......++. .+++++||++|.|+
T Consensus        79 ~ii~v~d~~~~~~~~~~~--~~~~~~~~--~~piiiv~nK~D~~~~~~~-------~~~~~~~~~-~~~~~~Sa~~~~gv  146 (157)
T cd01894          79 VILFVVDGREGLTPADEE--IAKYLRKS--KKPVILVVNKVDNIKEEDE-------AAEFYSLGF-GEPIPISAEHGRGI  146 (157)
T ss_pred             EEEEEEeccccCCccHHH--HHHHHHhc--CCCEEEEEECcccCChHHH-------HHHHHhcCC-CCeEEEecccCCCH
Confidence            999999998775554432  45556555  6999999999999763211       112223332 26899999999999


Q ss_pred             hHHHHHHHHH
Q 010548          165 PDVFYYAQKA  174 (507)
Q Consensus       165 ~~l~~~i~~~  174 (507)
                      ++++++|.+.
T Consensus       147 ~~l~~~l~~~  156 (157)
T cd01894         147 GDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.78  E-value=1.8e-18  Score=160.51  Aligned_cols=162  Identities=16%  Similarity=0.116  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC----CCCCCCCCCCCCeeeCC-----cc------------cCCceEEEEEeCCCCcc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE----SVPEKVPPVHAPTRLPP-----DF------------YPDRVPVTIIDTSSSLE   71 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~----~~~~~~~~~~~~~t~~~-----~~------------~~~~~~~~i~Dt~G~~~   71 (507)
                      ++|+++|++|||||||+++|+..    .+.........+.|+..     .+            ...+..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    11111111111122111     11            12367899999999865


Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhh-HHHHHHh---
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM-GPIMQQF---  147 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~---  147 (507)
                      +........+.+|++++|+|++++.+...... +. .....  ++|+++|+||+|+..........+.. ..+...+   
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            54444455677899999999998655444322 22 22223  67999999999987432210011111 1111111   


Q ss_pred             c-ccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       148 ~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      + ...+++++||++|.|+++++++|...+..|
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            1 123799999999999999999999887554

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.78  E-value=2.7e-18  Score=171.16  Aligned_cols=156  Identities=20%  Similarity=0.226  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCccc-CCceEEEEEeCCCCccch----hhh---HHhhccC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLENK----GKL---NEELKRA   83 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~----~~~---~~~~~~a   83 (507)
                      ..|+|||.||||||||+++|++.+... .++.+.-..++. .+. ....++.+|||||+.+..    .+.   ..+++.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            579999999999999999999875321 122211111111 111 224789999999985322    222   3456689


Q ss_pred             CEEEEEEeCCCh---hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           84 DAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        84 d~il~V~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      +++|+|+|+++.   .+++++.. |.+++....   .++|+++|+||+|+.....   ..+....+.+.++  .+++++|
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~---~~~~~~~l~~~~~--~~vi~iS  310 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE---LAELLKELKKALG--KPVFPIS  310 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH---HHHHHHHHHHHcC--CcEEEEE
Confidence            999999999986   66777765 777776653   3799999999999976422   2333444555544  2689999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 010548          158 ATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i  175 (507)
                      |+++.|+++++++|.+.+
T Consensus       311 Aktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       311 ALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCcCHHHHHHHHHHHh
Confidence            999999999999998753

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.78  E-value=3.9e-18  Score=178.11  Aligned_cols=159  Identities=19%  Similarity=0.157  Sum_probs=111.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhh-----------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGK-----------   75 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   75 (507)
                      ...++|+++|++|||||||+|+|++....  .....+++|.   ...+...+..+.+|||||+......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~--~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERV--IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCee--ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence            34689999999999999999999987632  2222233332   1223334568999999997543321           


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (507)
                      ...+++.+|++|+|+|++++.+..+..  +...+.+.  ++|+++|+||+|+... .. ...+....+...+..  ..++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKD-EK-TREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCC-HH-HHHHHHHHHHHhcccCCCCce
Confidence            124789999999999999988877654  66666665  7999999999999721 11 122222333333322  2379


Q ss_pred             EEeCcccCCCchHHHHHHHHHHc
Q 010548          154 VECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ++|||++|.|++++|+++.+.+.
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999988653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.77  E-value=1.2e-17  Score=165.40  Aligned_cols=165  Identities=20%  Similarity=0.264  Sum_probs=111.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh--------hhHHh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEE   79 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~   79 (507)
                      +.-.|+|+|+||||||||+|+|++.+....  +..+.+|   +.......+..+.++||||......        ....+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            345799999999999999999999875322  1122222   1111223457899999999764332        22346


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      +..+|++++|+|+++..+..  ...+...++..  ++|+++|+||+|+......  .......+...++ ..+++++||+
T Consensus        82 ~~~~D~il~vvd~~~~~~~~--~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~--l~~~~~~l~~~~~-~~~i~~iSA~  154 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGPG--DEFILEKLKKV--KTPVILVLNKIDLVKDKEE--LLPLLEELSELMD-FAEIVPISAL  154 (292)
T ss_pred             HhcCCEEEEEEeCCCCCChh--HHHHHHHHhhc--CCCEEEEEECCcCCCCHHH--HHHHHHHHHhhCC-CCeEEEecCC
Confidence            78999999999999843322  22255555543  6899999999999743211  2334444544443 3478999999


Q ss_pred             cCCCchHHHHHHHHHHcCCCCCCCcc
Q 010548          160 TMIQVPDVFYYAQKAVLHPTAPLFDH  185 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~~~~~~~~~  185 (507)
                      ++.|++++++.|.+.+... ++.+..
T Consensus       155 ~~~gv~~L~~~L~~~l~~~-~~~y~~  179 (292)
T PRK00089        155 KGDNVDELLDVIAKYLPEG-PPYYPE  179 (292)
T ss_pred             CCCCHHHHHHHHHHhCCCC-CCCCCC
Confidence            9999999999998876433 344443

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.77  E-value=8.4e-18  Score=163.26  Aligned_cols=224  Identities=12%  Similarity=0.079  Sum_probs=149.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------------CCCCCeeeC---CcccCCceEEEEEeCCCCccchhh
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVP---------------PVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGK   75 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~---------------~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~   75 (507)
                      +|+|+|++|+|||||+++|+.........               ....++|+.   ..+.+++.++.++||||...+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            48999999999999999997432111100               011122222   233467889999999999888888


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc--CcE
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI--ETC  153 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~  153 (507)
                      +..+++.+|++|+|+|+.++......  .++..++..  ++|+++++||+|+.+..    .......+...++..  ...
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~a~----~~~~~~~l~~~l~~~~~~~~  152 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTGAD----FFRVVEQIREKLGANPVPLQ  152 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCceEEE
Confidence            88999999999999999887443332  255666665  79999999999987532    223344455554432  246


Q ss_pred             EEeCcccC-CCchHHHHHHHHHHcCC-C--CC-----CCccchhcccHHHHHHHHHHHhhccCC------CCCccChhhh
Q 010548          154 VECSATTM-IQVPDVFYYAQKAVLHP-T--AP-----LFDHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAEL  218 (507)
Q Consensus       154 ~~~SA~~g-~gi~~l~~~i~~~i~~~-~--~~-----~~~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el  218 (507)
                      +++|+..+ .|+-+++   ...+... .  ..     ..........++++..|.+.....|+.      +++.++.+|+
T Consensus       153 ~Pisa~~~f~g~vd~~---~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el  229 (270)
T cd01886         153 LPIGEEDDFRGVVDLI---EMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEI  229 (270)
T ss_pred             eccccCCCceEEEEcc---ccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence            88998754 3454444   2222211 1  00     000111223345556666666666554      5778999999


Q ss_pred             HHHHhH----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548          219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (507)
Q Consensus       219 ~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~  248 (507)
                      ...+++          +|++++...|+..+++.+.+.+|+
T Consensus       230 ~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~  269 (270)
T cd01886         230 KAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPS  269 (270)
T ss_pred             HHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCC
Confidence            999887          899999999999999999999886

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PTZ00099 rab6; Provisional

Probab=99.77  E-value=6.9e-18  Score=153.85  Aligned_cols=139  Identities=13%  Similarity=0.129  Sum_probs=108.3

Q ss_pred             CCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc-
Q 010548           36 SVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-  112 (507)
Q Consensus        36 ~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~-  112 (507)
                      .|.+.+.++.. .+. ....+....+.+.||||+|++.+..++..+++.||++|+|||++++.||+.+.. |+..+.+. 
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~~   82 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNER   82 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHhc
Confidence            45555544433 222 234555667899999999999999999999999999999999999999999975 88877654 


Q ss_pred             CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       113 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      .++.|++||+||+|+...+.+  ..++...++..++.  .+++|||++|.||+++|++|.+.+....
T Consensus        83 ~~~~piilVgNK~DL~~~~~v--~~~e~~~~~~~~~~--~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKV--TYEEGMQKAQEYNT--MFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECcccccccCC--CHHHHHHHHHHcCC--EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            357899999999999765544  23344556666653  5899999999999999999999885543

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3e-18  Score=150.56  Aligned_cols=163  Identities=12%  Similarity=0.187  Sum_probs=127.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+..+|+++|-.|+||||++++|-..++...+|+....+.   .+..+++++.+||.+|++.++..++.|++..+++||
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf   90 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF   90 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence            45689999999999999999999998887777666544443   334558999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc-ccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~  166 (507)
                      |+|.+|++.+....+.+...+.... .+.|+++.+||.|+++.-......+.. .+ ..+. ..-.+..|+|.+|+|+.|
T Consensus        91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L-~l-~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKL-GL-HSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHh-hh-hccCCCCcEEeeccccccccHHH
Confidence            9999999999998886777666553 579999999999998764430111111 11 1111 111467899999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      .++++.+.+.
T Consensus       169 gl~wl~~~~~  178 (181)
T KOG0070|consen  169 GLDWLSNNLK  178 (181)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.1e-18  Score=145.94  Aligned_cols=85  Identities=25%  Similarity=0.418  Sum_probs=81.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +..|||++||..|||||+|++||..+-|++-...|+|++|.++++.++|++++++||||+|++||+++.  .+|||.|++
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit--qsyyrsaha   82 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT--QSYYRSAHA   82 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH--HHHhhhcce
Confidence            457999999999999999999999999999888999999999999999999999999999999999998  899999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      ++||||+
T Consensus        83 lilvydi   89 (213)
T KOG0095|consen   83 LILVYDI   89 (213)
T ss_pred             EEEEEec
Confidence            9999996

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.77  E-value=7.4e-18  Score=150.26  Aligned_cols=145  Identities=23%  Similarity=0.236  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--------hHHhhcc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEELKR   82 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~   82 (507)
                      ++|+++|++|+|||||++++.+.....  ..++..... ....+...+.++.+|||||...+...        ....+..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            689999999999999999999876421  122211111 11233345678999999997654322        2356789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +|++++|+|++++.+...... +..     ..++|+++|+||+|+......         ..  .....+++++||+++.
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~~---------~~--~~~~~~~~~~Sa~~~~  143 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSEL---------LS--LLAGKPIIAISAKTGE  143 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCcccc---------cc--ccCCCceEEEECCCCC
Confidence            999999999999877776543 222     337999999999998753221         11  1112379999999999


Q ss_pred             CchHHHHHHHHHH
Q 010548          163 QVPDVFYYAQKAV  175 (507)
Q Consensus       163 gi~~l~~~i~~~i  175 (507)
                      |+.+++++|.+.+
T Consensus       144 ~v~~l~~~l~~~~  156 (157)
T cd04164         144 GLDELKEALLELA  156 (157)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999987643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.77  E-value=6.3e-18  Score=157.16  Aligned_cols=165  Identities=14%  Similarity=0.110  Sum_probs=107.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cch
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENK   73 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~   73 (507)
                      |.+......++|+++|++|||||||+|+|++..+...+.+.. +.|....+...+..+.+|||||..          .+.
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~   94 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP-GRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQ   94 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-CceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence            444455667899999999999999999999876544433322 233222222224689999999953          222


Q ss_pred             hhhHHhhcc---CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           74 GKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        74 ~~~~~~~~~---ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      .....+++.   ++++++|+|.+++.+.....  +...+...  ++|+++++||+|+..........+.+.......  .
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~--~  168 (196)
T PRK00454         95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG--D  168 (196)
T ss_pred             HHHHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc--C
Confidence            333445554   46888999988765544322  34445444  789999999999875422201111122222222  2


Q ss_pred             CcEEEeCcccCCCchHHHHHHHHHH
Q 010548          151 ETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .+++++||+++.|++++++.|.+.+
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999987765

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.77  E-value=4.3e-18  Score=156.05  Aligned_cols=152  Identities=16%  Similarity=0.137  Sum_probs=97.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc----------chhhhHH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNE   78 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   78 (507)
                      ..+..+|+|+|++|||||||+|++++..+...+... ++.|....+...+..+.+|||||...          +......
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   93 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT-PGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEE   93 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence            356789999999999999999999987643332222 22222111111112689999999632          2223334


Q ss_pred             hhc---cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           79 ELK---RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        79 ~~~---~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      +++   .++++++|+|++++.+.....  +...+...  ++|+++|+||+|+..........+.+.......+...++++
T Consensus        94 ~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~  169 (179)
T TIGR03598        94 YLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL  169 (179)
T ss_pred             HHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence            554   358999999999876655543  45556554  79999999999987532210112223333333322237999


Q ss_pred             eCcccCCCch
Q 010548          156 CSATTMIQVP  165 (507)
Q Consensus       156 ~SA~~g~gi~  165 (507)
                      +||++|+|++
T Consensus       170 ~Sa~~g~gi~  179 (179)
T TIGR03598       170 FSSLKKTGID  179 (179)
T ss_pred             EECCCCCCCC
Confidence            9999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.4e-18  Score=152.69  Aligned_cols=84  Identities=18%  Similarity=0.413  Sum_probs=80.9

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+|++++|+.+||||||++||+.+.|...|.+|+|.+|-.+.+.+.+..+.+++|||||||||+++.  +.|+|++.++
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli--psY~Rds~va   98 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSSVA   98 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh--hhhccCCeEE
Confidence            34899999999999999999999999999999999999999999999999999999999999999999  7999999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      |+|||+
T Consensus        99 viVyDi  104 (221)
T KOG0094|consen   99 VIVYDI  104 (221)
T ss_pred             EEEEec
Confidence            999996

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=1.9e-17  Score=168.41  Aligned_cols=157  Identities=18%  Similarity=0.178  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc---ccC-CceEEEEEeCCCCccch-------hhhHHhhcc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD---FYP-DRVPVTIIDTSSSLENK-------GKLNEELKR   82 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~---~~~-~~~~~~i~Dt~G~~~~~-------~~~~~~~~~   82 (507)
                      .|+|||.||||||||+|+|++.+.   ..+..+.+|....   +.. ....+.++||||..+..       .....+++.
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            699999999999999999998763   2233344442221   222 23569999999986422       122356899


Q ss_pred             CCEEEEEEeCC---ChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548           83 ADAVVLTYACN---QQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        83 ad~il~V~D~~---~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      +|++++|+|++   +...++.... |..++....   .++|+++|+||+|+......   .+.+..+...++...+++++
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el---~~~l~~l~~~~~~~~~Vi~I  313 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA---EERAKAIVEALGWEGPVYLI  313 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH---HHHHHHHHHHhCCCCCEEEE
Confidence            99999999988   4455666654 777777653   36899999999998653222   23334444444322258999


Q ss_pred             CcccCCCchHHHHHHHHHHcC
Q 010548          157 SATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      ||+++.|++++++.|.+.+..
T Consensus       314 SA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        314 SAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             ECCCCcCHHHHHHHHHHHhhh
Confidence            999999999999999987743

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.76  E-value=2.4e-17  Score=157.30  Aligned_cols=202  Identities=15%  Similarity=0.164  Sum_probs=137.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---------C------CCCee---eCCcccCCceEEEEEeCCCCccchhh
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP---------V------HAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK   75 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~---------~------~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (507)
                      +|+++|++|+|||||+++|+...-......         .      ..+.+   ....+.+++.++.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            489999999999999999986532111000         0      00111   11233466889999999999999888


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      ...+++.+|++++|+|++++.....  ..+...+++.  ++|+++++||+|+...    ........+...++..  +++
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a----~~~~~~~~i~~~~~~~--~~~  150 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGA----DLEKVYQEIKEKLSSD--IVP  150 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCC----CHHHHHHHHHHHHCCC--eEE
Confidence            8999999999999999998755432  2366667666  7999999999998754    2345666777777652  333


Q ss_pred             eCcccCCCchHHHHHHHHHHcCCCCCCCccchhcccHHHHHHHHHHHhhccCC------CCCccChhhhHHHHhH-----
Q 010548          156 CSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNEFQVK-----  224 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~~~~~-----  224 (507)
                      +.--   ++...+.                    ........|.+.....|+.      +++.++.+|+....++     
T Consensus       151 ~~~p---~~~~~~~--------------------~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~  207 (237)
T cd04168         151 MQKV---GLAPNIC--------------------ETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKR  207 (237)
T ss_pred             EECC---cEeeeee--------------------eeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence            2210   0000000                    0001112333333333332      5678999999999987     


Q ss_pred             -----hcCCCCCHHHHHHHHHHHHhhccC
Q 010548          225 -----CFNAPLQPAEIVGVKRVVQEKQHD  248 (507)
Q Consensus       225 -----~~~~~l~~~~~~~l~~~i~~~~~~  248 (507)
                           +|++++...|+..|++.+.+.+|+
T Consensus       208 ~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~  236 (237)
T cd04168         208 KVFPVYHGSALKGIGIEELLEGITKLFPT  236 (237)
T ss_pred             CeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence                 899999999999999999999986

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.76  E-value=6.2e-18  Score=154.04  Aligned_cols=149  Identities=21%  Similarity=0.266  Sum_probs=100.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeeeC---CcccCC-ceEEEEEeCCCCcc----chhh---hHHhhccCC
Q 010548           17 VVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLP---PDFYPD-RVPVTIIDTSSSLE----NKGK---LNEELKRAD   84 (507)
Q Consensus        17 ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~t~~---~~~~~~-~~~~~i~Dt~G~~~----~~~~---~~~~~~~ad   84 (507)
                      |+|++|||||||+|+|++.... ..++    .+|..   ..+... +..+.+|||||..+    ...+   ....++.+|
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d   76 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYP----FTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD   76 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCC----ceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence            5899999999999999998641 1121    12211   122344 78899999999742    1222   234678899


Q ss_pred             EEEEEEeCCCh------hhHHHHHHhHHHHHHhcC--------CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           85 AVVLTYACNQQ------STLSRLSSYWLPELRRLE--------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        85 ~il~V~D~~~~------~s~~~~~~~~~~~l~~~~--------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      ++++|+|+++.      .++..... |...+....        .++|+++|+||+|+...... . .......  .....
T Consensus        77 ~ii~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~-~~~~~~~--~~~~~  151 (176)
T cd01881          77 AILHVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL-E-EELVREL--ALEEG  151 (176)
T ss_pred             EEEEEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH-H-HHHHHHH--hcCCC
Confidence            99999999988      46766654 666655432        36999999999999765333 1 1101111  12222


Q ss_pred             CcEEEeCcccCCCchHHHHHHHHH
Q 010548          151 ETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      .+++++||+++.|++++++.+.+.
T Consensus       152 ~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         152 AEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             CCEEEEehhhhcCHHHHHHHHHhh
Confidence            369999999999999999988653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.76  E-value=3.5e-18  Score=145.53  Aligned_cols=113  Identities=33%  Similarity=0.492  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ||+|+|++|||||||+++|++..+. ..........++   ..........+.+||++|.+.+.......+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876 122222222221   122234445699999999988888777889999999999


Q ss_pred             EeCCChhhHHHHHHh--HHHHHHhcCCCCcEEEEEeccc
Q 010548           90 YACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLD  126 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~--~~~~l~~~~~~~piilv~NK~D  126 (507)
                      ||++++.|++.+.+.  |+..+++..+++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999997652  6777777667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.76  E-value=1.5e-18  Score=145.02  Aligned_cols=155  Identities=17%  Similarity=0.245  Sum_probs=122.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ..+.+.++|-.++|||||+|.+..+.+.+. +|+......   .+..+.+.+.+||.||+..++.+++.|+++++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            357899999999999999999998887666 444333322   4456789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc------cCcEEEeCcccCC
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE------IETCVECSATTMI  162 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~SA~~g~  162 (507)
                      +|+.+++..+...+.+...+.+.. .++|+++.|||.|++..-..       ..+..+++-      -..+|.+||+...
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~-------~~li~rmgL~sitdREvcC~siScke~~  168 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK-------IALIERMGLSSITDREVCCFSISCKEKV  168 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH-------HHHHHHhCccccccceEEEEEEEEcCCc
Confidence            999999888877776777766542 47999999999999875222       122222221      1268999999999


Q ss_pred             CchHHHHHHHHHH
Q 010548          163 QVPDVFYYAQKAV  175 (507)
Q Consensus       163 gi~~l~~~i~~~i  175 (507)
                      ||+.+.++|++..
T Consensus       169 Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  169 NIDITLDWLIEHS  181 (186)
T ss_pred             cHHHHHHHHHHHh
Confidence            9999999998753

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=1.9e-17  Score=169.18  Aligned_cols=152  Identities=20%  Similarity=0.263  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc---cCC-ceEEEEEeCCCCccc----hhhhH---Hhhcc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF---YPD-RVPVTIIDTSSSLEN----KGKLN---EELKR   82 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~---~~~-~~~~~i~Dt~G~~~~----~~~~~---~~~~~   82 (507)
                      .|+|||.||||||||+|+|++.+.  .+ ...+.+|....+   ... +..+.+|||||..+.    ..+..   .+++.
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~--kI-a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP--KI-ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC--cc-ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            799999999999999999998763  22 122333422221   222 578999999997532    12223   34667


Q ss_pred             CCEEEEEEeCCCh---hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548           83 ADAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        83 ad~il~V~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      ++++|+|+|+++.   .++++... |..++..+.   .++|++||+||+|+...      .+....+.+.++  .+++++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~--~~i~~i  307 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG--PKVFPI  307 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC--CcEEEE
Confidence            9999999999864   56677664 888887754   26999999999998432      223445555555  368999


Q ss_pred             CcccCCCchHHHHHHHHHHcC
Q 010548          157 SATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      ||+++.|+++++++|.+.+..
T Consensus       308 SA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        308 SALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887744

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.5e-18  Score=151.28  Aligned_cols=84  Identities=26%  Similarity=0.411  Sum_probs=80.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+|++++|++|||||||+.||..++|.....+|+|.-|..+.+.+++..+++.||||||++||.++.  +.|||+|+++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sla--pMYyRgA~AA   81 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLA--PMYYRGANAA   81 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccc--cceecCCcEE
Confidence            35899999999999999999999999999889999999999999999889999999999999999998  8999999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      |+|||+
T Consensus        82 ivvYDi   87 (200)
T KOG0092|consen   82 IVVYDI   87 (200)
T ss_pred             EEEEec
Confidence            999996

>cd04163 Era Era subfamily

Probab=99.75  E-value=2.5e-17  Score=147.97  Aligned_cols=155  Identities=21%  Similarity=0.222  Sum_probs=105.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh--------hhHHh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG--------KLNEE   79 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~   79 (507)
                      ...+|+++|.+|+|||||+|++++........  ...++   ....+...+..+.+|||||......        .....
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP--KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccC--CCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            35789999999999999999999876422111  11111   1122334467899999999764332        22346


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      +..+|++++|+|++++.+.  ....+...+...  +.|+++|+||+|+......  ..+....+....+ ..+++++|++
T Consensus        80 ~~~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~-~~~~~~~s~~  152 (168)
T cd04163          80 LKDVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKED--LLPLLEKLKELGP-FAEIFPISAL  152 (168)
T ss_pred             HHhCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHHH--HHHHHHHHHhccC-CCceEEEEec
Confidence            8899999999999987222  222255556554  6899999999999743221  2333444444443 2378999999


Q ss_pred             cCCCchHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKA  174 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~  174 (507)
                      ++.|++++++.|.+.
T Consensus       153 ~~~~~~~l~~~l~~~  167 (168)
T cd04163         153 KGENVDELLEEIVKY  167 (168)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=5.4e-18  Score=147.83  Aligned_cols=85  Identities=22%  Similarity=0.388  Sum_probs=81.9

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+|++++|+.|||||+|+.||+.+.|..+++.|+|.+|..+.+.+++++++++||||+|+++|+++.  .+|||.|.+
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~--~syYr~a~G   81 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVT--RSYYRGAAG   81 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHH--HHHhccCcc
Confidence            357999999999999999999999999999999999999999999999999999999999999999998  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      ++||||+
T Consensus        82 alLVydi   88 (216)
T KOG0098|consen   82 ALLVYDI   88 (216)
T ss_pred             eEEEEEc
Confidence            9999996

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2.7e-18  Score=144.31  Aligned_cols=87  Identities=25%  Similarity=0.457  Sum_probs=83.2

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      +.++.+|++++|+.|.|||||+++|+.++|...+..|+|++|..+.+.+.++.++++||||+||++|+++.  +.|||+|
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVt--RsYYRGA   82 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGA   82 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHH--HHHhccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999998  7899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      .+++||||+
T Consensus        83 AGAlLVYD~   91 (214)
T KOG0086|consen   83 AGALLVYDI   91 (214)
T ss_pred             cceEEEEec
Confidence            999999996

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=1.7e-17  Score=173.48  Aligned_cols=156  Identities=22%  Similarity=0.210  Sum_probs=110.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-----------hh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-----------KL   76 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~   76 (507)
                      ..++|+|+|++|||||||+|+|++...  ...+..+++|   +...+...+..+.+|||||......           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~--~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEER--VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCc--eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            469999999999999999999998762  2233333444   2223334567899999999743221           11


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEE
Q 010548           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCV  154 (507)
Q Consensus        77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (507)
                      ..+++.+|++|+|+|++++.+..+..  +...+...  ++|+++|+||+|+.....   ..+....+...+..  ..+++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~~--~~~~ivv~NK~Dl~~~~~---~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR--IAGLALEA--GRALVIVVNKWDLVDEKT---MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCCCHHH---HHHHHHHHHHhcccccCCCEE
Confidence            24788999999999999998777654  66666665  799999999999874321   11222223333221  23799


Q ss_pred             EeCcccCCCchHHHHHHHHHH
Q 010548          155 ECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ++||++|.|++++++.+.+..
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999988765

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.74  E-value=2.9e-17  Score=144.37  Aligned_cols=153  Identities=24%  Similarity=0.306  Sum_probs=108.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC
Q 010548           17 VVGDRGTGKSSLIAAAATESV-PEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        17 ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~   94 (507)
                      |+|++|+|||||++++.+... .....++... .............+.+||+||...+.......++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998875 2232222211 11222333447889999999988877777888999999999999999


Q ss_pred             hhhHHHHHHhH-HHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHH
Q 010548           95 QSTLSRLSSYW-LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQ  172 (507)
Q Consensus        95 ~~s~~~~~~~~-~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~  172 (507)
                      +.+.......+ .........++|+++|+||+|+...... . ............. .+++++||+++.|+.+++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-S-EEELAEQLAKELG-VPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-H-HHHHHHHHHhhcC-CcEEEEecCCCCChHHHHHHHh
Confidence            99888887621 2222333458999999999998765433 1 1111122222222 3799999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK11058 GTPase HflX; Provisional

Probab=99.74  E-value=3.9e-17  Score=168.04  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC-CCCCeeeCCcccCCceEEEEEeCCCCccc--hhhhH------Hhhcc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN--KGKLN------EELKR   82 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~--~~~~~------~~~~~   82 (507)
                      .+|+|+|.+|||||||+|+|++..+.. +.+. +...++....+ +....+.+|||+|....  ...+.      ..++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l-~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV-ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe-CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999876432 2222 12222212222 22237899999997432  22222      34689


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ||++|+|+|++++.+++.+.. |...+.... .++|+++|+||+|+......     ....  ...+ ...++++||++|
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----~~~~--~~~~-~~~~v~ISAktG  347 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----RIDR--DEEN-KPIRVWLSAQTG  347 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-----HHHH--HhcC-CCceEEEeCCCC
Confidence            999999999999988877653 444444432 37999999999998643111     1111  1122 112588999999


Q ss_pred             CCchHHHHHHHHHHc
Q 010548          162 IQVPDVFYYAQKAVL  176 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~  176 (507)
                      .|++++++.|.+.+.
T Consensus       348 ~GIdeL~e~I~~~l~  362 (426)
T PRK11058        348 AGIPLLFQALTERLS  362 (426)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998874

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.73  E-value=1.6e-16  Score=133.87  Aligned_cols=168  Identities=18%  Similarity=0.183  Sum_probs=129.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCCeeeCCccc-CCceEEEEEeCCCCccc-hhhhHHhhcc
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAPTRLPPDFY-PDRVPVTIIDTSSSLEN-KGKLNEELKR   82 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~-~~~~~~~~~~   82 (507)
                      .+-+..||+++|..+||||+++.+++.++....   .++....+....+-+ .-...+.++||.|...+ ..+-+.|+.-
T Consensus         5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~   84 (198)
T KOG3883|consen    5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF   84 (198)
T ss_pred             hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence            345678999999999999999999997765433   233323333222222 22467999999999887 4555678899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      +|++++|||..+++||+.+.. +..+|.+..  ..+||++++||+|+.+.+.+  ..+.+..|++.-+-  ..++++|.+
T Consensus        85 aDafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v--d~d~A~~Wa~rEkv--kl~eVta~d  159 (198)
T KOG3883|consen   85 ADAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREV--DMDVAQIWAKREKV--KLWEVTAMD  159 (198)
T ss_pred             CceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhc--CHHHHHHHHhhhhe--eEEEEEecc
Confidence            999999999999999999885 777777653  35899999999999877666  34456677766553  689999999


Q ss_pred             CCCchHHHHHHHHHHcCCCC
Q 010548          161 MIQVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~~~~  180 (507)
                      ...+-+.|.++...+..|+.
T Consensus       160 R~sL~epf~~l~~rl~~pqs  179 (198)
T KOG3883|consen  160 RPSLYEPFTYLASRLHQPQS  179 (198)
T ss_pred             chhhhhHHHHHHHhccCCcc
Confidence            99999999999998876654

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=4.9e-17  Score=157.74  Aligned_cols=223  Identities=13%  Similarity=0.056  Sum_probs=132.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-----C--------------ee---eCCcccCCceEEEEEeCCCCc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-----P--------------TR---LPPDFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-----~--------------~t---~~~~~~~~~~~~~i~Dt~G~~   70 (507)
                      .+|+|+|++|+|||||+++|+...-.....+...     +              .+   ....+.++++++++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            4799999999999999999985432111111000     0              00   112345678999999999998


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      +|......+++.+|++|+|+|++++.....  ..++......  ++|+++++||+|+....    .......+...++..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a~----~~~~~~~l~~~l~~~  154 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGRD----PLELLDEIEEELGID  154 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCCC----HHHHHHHHHHHHCCC
Confidence            888777888999999999999988643322  2255555554  79999999999986642    223345555556542


Q ss_pred             CcEEEeCcccCCCchHHHHHHHHHHcCC-CC--C-CCc----c-chhcccHHHHHHHHHHHhhccCCCCCccChhhhHHH
Q 010548          151 ETCVECSATTMIQVPDVFYYAQKAVLHP-TA--P-LFD----H-DEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEF  221 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~l~~~i~~~i~~~-~~--~-~~~----~-~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~  221 (507)
                      .-.+.+....+.++..+.+.+...+... ..  . ...    + .......+....|-+.+.     ++..++.+++...
T Consensus       155 ~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~~~-----e~~~~~~~~~~~~  229 (267)
T cd04169         155 CTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQLR-----EELELLEGAGPEF  229 (267)
T ss_pred             ceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHHHh-----CCCccchhhhHHH
Confidence            2122333334444444444444333211 10  0 000    0 000111111112222111     2234555555544


Q ss_pred             HhH----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548          222 QVK----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (507)
Q Consensus       222 ~~~----------~~~~~l~~~~~~~l~~~i~~~~~~  248 (507)
                      .++          +|++++...|+..|++.+.+.+|+
T Consensus       230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~  266 (267)
T cd04169         230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPA  266 (267)
T ss_pred             hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence            444          899999999999999999999986

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=4.3e-17  Score=162.41  Aligned_cols=231  Identities=21%  Similarity=0.221  Sum_probs=154.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc-chh--------hhH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE-NKG--------KLN   77 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~-~~~--------~~~   77 (507)
                      ...++|+|+|+||||||||+|.|.+..  ..+++..+++|   +...++.+++++.+.||+|..+ ...        ...
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~d--rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSRED--RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCC--ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            456899999999999999999999988  77777788888   6677888999999999999876 222        223


Q ss_pred             HhhccCCEEEEEEeCCCh--hhHHHHHHhHHHHHHhc-------CCCCcEEEEEecccCCCC-CCccchhhhhHHHHHHh
Q 010548           78 EELKRADAVVLTYACNQQ--STLSRLSSYWLPELRRL-------EIKVPIIVAGCKLDLRGD-HNATSLEEVMGPIMQQF  147 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~--~s~~~~~~~~~~~l~~~-------~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~  147 (507)
                      ..++.||++++|+|+...  ++...+.+ .+......       ....|++++.||+|+... ... ........-....
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~-~~~~~~~~~~~~~  421 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM-TKIPVVYPSAEGR  421 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccc-cCCceeccccccC
Confidence            678999999999999433  33333222 33322221       124899999999999875 221 1100000001111


Q ss_pred             cccCcEEEeCcccCCCchHHHHHHHHHHcC----CC--CCCCccchhc-ccHHHHH-HHHHHHhhccCCCCCccChhhhH
Q 010548          148 REIETCVECSATTMIQVPDVFYYAQKAVLH----PT--APLFDHDEQT-LKPRCVR-ALKRIFIICDHDMDGALNDAELN  219 (507)
Q Consensus       148 ~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~----~~--~~~~~~~~~~-~~~~~~~-~l~~~~~~~d~~~d~~l~~~el~  219 (507)
                      +......++|+++++|+.+|...+.+.+..    +.  ++...+.+.. ....|.. .+.+.+...+...|..+..++|+
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~lR  501 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEPLR  501 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhccchHH
Confidence            222245779999999999999988887632    21  2233333332 3333333 57777777777789999999999


Q ss_pred             HHHhHhcCCCCCHHHHHHHHHHHHhh
Q 010548          220 EFQVKCFNAPLQPAEIVGVKRVVQEK  245 (507)
Q Consensus       220 ~~~~~~~~~~l~~~~~~~l~~~i~~~  245 (507)
                      .++...-.... ..+.+.+.+.+...
T Consensus       502 ~a~~~i~r~tg-gggte~vls~ifqk  526 (531)
T KOG1191|consen  502 LAQRSIARITG-GGGTEEVLSSIFQK  526 (531)
T ss_pred             HHHhhhcccCC-CCchhhHHHHHHHH
Confidence            99887665555 56666666666543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1e-17  Score=150.32  Aligned_cols=87  Identities=23%  Similarity=0.397  Sum_probs=83.5

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      +.++.+||++||++||||||++.||..+.|...+..|+|.+|.++.+.++|..+++++|||+||++|+++.  ..|||+|
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~--~sYyrgA   85 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGA   85 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHH--HHHHhhc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999998  7899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      ++++||||+
T Consensus        86 ~gi~LvyDi   94 (207)
T KOG0078|consen   86 MGILLVYDI   94 (207)
T ss_pred             CeeEEEEEc
Confidence            999999996

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.73  E-value=5e-18  Score=147.79  Aligned_cols=85  Identities=21%  Similarity=0.447  Sum_probs=81.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +..+||+++|++|||||||+|+|++++|...|..|+|.+|..+.+.+++..+.++||||||++||.++.  ...||+||+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg--~aFYRgaDc   84 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG--VAFYRGADC   84 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc--cceecCCce
Confidence            457999999999999999999999999999999999999999999999888899999999999999998  679999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        85 Cvlvydv   91 (210)
T KOG0394|consen   85 CVLVYDV   91 (210)
T ss_pred             EEEEeec
Confidence            9999995

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=5.1e-17  Score=178.70  Aligned_cols=157  Identities=19%  Similarity=0.117  Sum_probs=108.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCcc----------chhh-h
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLE----------NKGK-L   76 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~----------~~~~-~   76 (507)
                      ..+||+++|++|||||||+|+|++....  .+...+++|.   ...+..++..+.+|||||+.+          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~--~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERA--VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccc--ccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999988732  1222223331   122334566788999999642          1111 1


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc--ccCcEE
Q 010548           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCV  154 (507)
Q Consensus        77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~  154 (507)
                      ..+++.+|++++|+|++++.+..+..  +...+...  ++|+++|+||+|+.+....   ......+...+.  ...+++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~---~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRR---QRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHH---HHHHHHHHHhccCCCCCCEE
Confidence            24578999999999999998888765  55666555  7999999999999753221   111112222221  123679


Q ss_pred             EeCcccCCCchHHHHHHHHHHc
Q 010548          155 ECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ++||++|.|++++++.+.+.+.
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~  621 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALE  621 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988764

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.1e-17  Score=149.32  Aligned_cols=88  Identities=26%  Similarity=0.376  Sum_probs=83.8

Q ss_pred             cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      +..++.|||++||+|+||||-|+.||..++|...+.+|+|.++....+.++++.++.+|||||||+||+.+.  ..|||+
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit--SaYYrg   86 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT--SAYYRG   86 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc--chhhcc
Confidence            345789999999999999999999999999999999999999999999999999999999999999999988  689999


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      |.++++|||+
T Consensus        87 AvGAllVYDI   96 (222)
T KOG0087|consen   87 AVGALLVYDI   96 (222)
T ss_pred             cceeEEEEec
Confidence            9999999996

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=5.1e-17  Score=167.94  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=104.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccch----h---hhHHhhc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENK----G---KLNEELK   81 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~----~---~~~~~~~   81 (507)
                      ...|+|||.||||||||+|+|++.+..  + ...+.+|+.   ..+...+.++.+|||||+.+..    .   ....+++
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpk--I-adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPK--I-ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCcc--c-cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            357999999999999999999987632  2 222333422   1233456789999999974321    1   1234678


Q ss_pred             cCCEEEEEEeCCCh----hhHHHHHHhHHHHHHhcC------------CCCcEEEEEecccCCCCCCccchhhhhHHHHH
Q 010548           82 RADAVVLTYACNQQ----STLSRLSSYWLPELRRLE------------IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ  145 (507)
Q Consensus        82 ~ad~il~V~D~~~~----~s~~~~~~~~~~~l~~~~------------~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~  145 (507)
                      .+|++|+|+|+++.    +.++++.. |..++..+.            .++|+|+|+||+|+.+....   .+.......
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el---~e~l~~~l~  311 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL---AEFVRPELE  311 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH---HHHHHHHHH
Confidence            89999999999853    34444443 444444332            26899999999999754222   111222222


Q ss_pred             HhcccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          146 QFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       146 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      ..+  .++++|||+++.|+++++++|.+.+..
T Consensus       312 ~~g--~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        312 ARG--WPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             HcC--CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            233  268999999999999999999887643

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.72  E-value=4e-17  Score=150.87  Aligned_cols=157  Identities=22%  Similarity=0.290  Sum_probs=111.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------CC--CCCCeee---CCccc--CCceEEEEEeCCCCc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-------------PP--VHAPTRL---PPDFY--PDRVPVTIIDTSSSL   70 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-------------~~--~~~~~t~---~~~~~--~~~~~~~i~Dt~G~~   70 (507)
                      +.++|+++|+.++|||||+++|+........             .+  ...+.|+   ...+.  .....+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4578999999999999999999965421110             00  0011111   11222  567899999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH----HHHHH
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG----PIMQQ  146 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----~~~~~  146 (507)
                      .+.......++.+|++|+|+|+.++.......  .+..++..  ++|+++|+||+|+...    ...+...    .+.+.
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~~--~~p~ivvlNK~D~~~~----~~~~~~~~~~~~l~~~  153 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILREL--GIPIIVVLNKMDLIEK----ELEEIIEEIKEKLLKE  153 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHHHT--T-SEEEEEETCTSSHH----HHHHHHHHHHHHHHHH
T ss_pred             ceeecccceecccccceeeeeccccccccccc--cccccccc--ccceEEeeeeccchhh----hHHHHHHHHHHHhccc
Confidence            98888889999999999999999875554433  56667666  7999999999999832    1222333    33333


Q ss_pred             hcc----cCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          147 FRE----IETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       147 ~~~----~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ++.    ..+++++||++|.|+++|++.|.+.+
T Consensus       154 ~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  154 YGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            322    23799999999999999999998765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.72  E-value=5.9e-17  Score=172.54  Aligned_cols=156  Identities=18%  Similarity=0.160  Sum_probs=107.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCC-ceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPD-RVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      .+..+|+++|++|+|||||+++|.+.++.....   +++|...   .+... +..+.+|||||++.|..++...+..+|+
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~---~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDi  161 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA---GGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDI  161 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccC---CceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCE
Confidence            456799999999999999999999877644322   2233211   12222 2389999999999999988889999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH---HHHHHhcccCcEEEeCcccCC
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG---PIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +++|+|++++...+...  .+..++..  ++|+++++||+|+...... .....+.   .....++...+++++||++|.
T Consensus       162 aILVVda~dgv~~qT~e--~i~~~~~~--~vPiIVviNKiDl~~~~~e-~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       162 VVLVVAADDGVMPQTIE--AISHAKAA--NVPIIVAINKIDKPEANPD-RVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEEEECCCCCCHhHHH--HHHHHHHc--CCCEEEEEECcccccCCHH-HHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            99999998754333332  22333444  7999999999999653211 0111111   011222222368999999999


Q ss_pred             CchHHHHHHHH
Q 010548          163 QVPDVFYYAQK  173 (507)
Q Consensus       163 gi~~l~~~i~~  173 (507)
                      |++++++.|..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.72  E-value=4.9e-17  Score=175.42  Aligned_cols=162  Identities=14%  Similarity=0.182  Sum_probs=111.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CC---CCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PV---HAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      ..+..+|+|+|++++|||||+++|.+..+..... +.   ...+.........+..+.+|||||+..|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            3456799999999999999999999877643321 11   1111111122234689999999999999999989999999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHH---HHHHhcccCcEEEeCcccC
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP---IMQQFREIETCVECSATTM  161 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~SA~~g  161 (507)
                      ++|+|+|++++...+...  .+..+...  ++|+|+|+||+|+...... .....+..   +...++...+++++||++|
T Consensus       321 iaILVVDA~dGv~~QT~E--~I~~~k~~--~iPiIVViNKiDl~~~~~e-~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        321 IAILIIAADDGVKPQTIE--AINYIQAA--NVPIIVAINKIDKANANTE-RIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEEEECcCCCChhhHH--HHHHHHhc--CceEEEEEECCCccccCHH-HHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            999999998864433332  22334444  7999999999999753211 11111111   1223343347999999999


Q ss_pred             CCchHHHHHHHHHH
Q 010548          162 IQVPDVFYYAQKAV  175 (507)
Q Consensus       162 ~gi~~l~~~i~~~i  175 (507)
                      .|++++++.|....
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999987653

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.72  E-value=6.8e-17  Score=151.10  Aligned_cols=164  Identities=17%  Similarity=0.136  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc---ccC---------------------------------
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD---FYP---------------------------------   56 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~---~~~---------------------------------   56 (507)
                      ++|+++|+.|+|||||+..+.+............+.++...   +.+                                 
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47999999999999999999765211100000011110000   000                                 


Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~  136 (507)
                      ....+.+|||||++.+.......+..+|++++|+|++++........ .+..+.... ..|+++|+||+|+.........
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~~-~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIMG-LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHcC-CCcEEEEEEchhccCHHHHHHH
Confidence            12689999999988877777778889999999999987411111111 222233331 3579999999999753211001


Q ss_pred             hhhhHHHHHHhc-ccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          137 EEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      .+.+..+...+. ...+++++||++|.|++++++.|.+.+..|
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            122222222211 123689999999999999999998876554

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.72  E-value=1e-16  Score=171.57  Aligned_cols=160  Identities=18%  Similarity=0.158  Sum_probs=114.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCcc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESV-------PEKVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSLE   71 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~-------~~~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~~   71 (507)
                      ..+|+|+|+.++|||||+++|+....       ...+...     ..+.|+.     ..+   +...+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            35799999999999999999987531       1111111     1122211     111   23358899999999999


Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-  150 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-  150 (507)
                      |...+..+++.+|++|+|+|++++.+.+.... |...+. .  ++|+++|+||+|+....    .......+...++.. 
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-~--~ipiIiViNKiDl~~~~----~~~~~~el~~~lg~~~  154 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-N--DLEIIPVINKIDLPSAD----PERVKKEIEEVIGLDA  154 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-c--CCCEEEEEECcCCCccC----HHHHHHHHHHHhCCCc
Confidence            99889999999999999999999877776654 544332 3  68999999999986532    222334444444421 


Q ss_pred             CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          151 ETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      ..++++||++|.|++++++.|.+.+..|.
T Consensus       155 ~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       155 SEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             ceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            14799999999999999999998876553

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.71  E-value=8.7e-18  Score=140.55  Aligned_cols=84  Identities=30%  Similarity=0.471  Sum_probs=80.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+|.+|||+||||||||+.+|..+.|+..|..|+|.++.++++.++|..++++||||||+++|+.+.  ..||+..+++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit--styyrgthgv   84 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT--STYYRGTHGV   84 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH--HHHccCCceE
Confidence            45789999999999999999999999999999999999999999999999999999999999999998  6799999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        85 ~vVYDV   90 (198)
T KOG0079|consen   85 IVVYDV   90 (198)
T ss_pred             EEEEEC
Confidence            999996

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.71  E-value=1.4e-16  Score=173.56  Aligned_cols=157  Identities=19%  Similarity=0.177  Sum_probs=110.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ..+...|+|+|+.++|||||+++|.+..+....   ..++|...   .+.+.+..++||||||+..|..++...++.+|+
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e---~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE---AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc---cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCE
Confidence            456688999999999999999999887654332   12233111   233446789999999999999999889999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhh---HHHHHHhcccCcEEEeCcccCC
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM---GPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +|+|||++++...+...  .+..++..  ++|+|+++||+|+...... .....+   ..+...++...+++++||++|.
T Consensus       364 aILVVdAddGv~~qT~e--~i~~a~~~--~vPiIVviNKiDl~~a~~e-~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        364 VVLVVAADDGVMPQTIE--AINHAKAA--GVPIIVAINKIDKPGANPD-RVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEEEECCCCCCHhHHH--HHHHHHhc--CCcEEEEEECccccccCHH-HHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            99999999854333322  22334444  7999999999999653211 011111   1122333333479999999999


Q ss_pred             CchHHHHHHHH
Q 010548          163 QVPDVFYYAQK  173 (507)
Q Consensus       163 gi~~l~~~i~~  173 (507)
                      ||+++++.|..
T Consensus       439 GI~eLle~I~~  449 (787)
T PRK05306        439 GIDELLEAILL  449 (787)
T ss_pred             CchHHHHhhhh
Confidence            99999998864

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.71  E-value=2.7e-16  Score=172.20  Aligned_cols=151  Identities=15%  Similarity=0.159  Sum_probs=112.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhh----------hH
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGK----------LN   77 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~   77 (507)
                      +.++|+++|+||||||||+|+|++.+.   .....+++|.   ...+...+.++.+|||||...+...          ..
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~---~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQ---RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCC---ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            457999999999999999999998764   2233355553   2334567789999999998755321          12


Q ss_pred             Hhh--ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           78 EEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        78 ~~~--~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      .++  ..+|++++|+|+++.+..  +  +|...+.+.  ++|+++|+||+|+.+.+..   ....+.+.+.++.  ++++
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~--l--~l~~ql~e~--giPvIvVlNK~Dl~~~~~i---~id~~~L~~~LG~--pVvp  147 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERN--L--YLTLQLLEL--GIPCIVALNMLDIAEKQNI---RIDIDALSARLGC--PVIP  147 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhh--H--HHHHHHHHc--CCCEEEEEEchhhhhccCc---HHHHHHHHHHhCC--CEEE
Confidence            233  489999999999886432  2  255566665  7999999999998755443   2345667777774  7999


Q ss_pred             eCcccCCCchHHHHHHHHHH
Q 010548          156 CSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i  175 (507)
                      +||++|+|++++.+.+.+..
T Consensus       148 iSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        148 LVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEeecCCCHHHHHHHHHHhh
Confidence            99999999999999988765

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.70  E-value=3.5e-16  Score=146.16  Aligned_cols=117  Identities=19%  Similarity=0.275  Sum_probs=89.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee-CCcccCCceEEEEEeCCCCccchhhhHHhhccC-CEEEEEEe
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL-PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA-DAVVLTYA   91 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a-d~il~V~D   91 (507)
                      +|+++|++|||||||+++|....+...+++..+.... .......+..+.+|||||+..+...+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999998876665554333221 111113467899999999999988888899998 99999999


Q ss_pred             CCCh-hhHHHHHHhHHHHHHh---cCCCCcEEEEEecccCCCC
Q 010548           92 CNQQ-STLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        92 ~~~~-~s~~~~~~~~~~~l~~---~~~~~piilv~NK~Dl~~~  130 (507)
                      +++. .++..+..++...+..   ..+++|+++|+||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9997 6777776644444332   2357999999999998764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.70  E-value=1.5e-16  Score=170.22  Aligned_cols=157  Identities=17%  Similarity=0.107  Sum_probs=109.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +.|+++|++|+|||||+++|++............+.|+..   .+...+..+.+|||||++.|.......+..+|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            4699999999999999999997441111111122333221   1233458899999999998888888889999999999


Q ss_pred             EeCCCh---hhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEEEeCcccCCC
Q 010548           90 YACNQQ---STLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATTMIQ  163 (507)
Q Consensus        90 ~D~~~~---~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~SA~~g~g  163 (507)
                      +|++++   .+.+.+     ..++..  ++| +++|+||+|+.+........+.+..+...++.  ..+++++||++|.|
T Consensus        81 VDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G  153 (581)
T TIGR00475        81 VDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG  153 (581)
T ss_pred             EECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence            999984   444333     334444  677 99999999997643220123344455554432  24799999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      ++++++.|...+.
T Consensus       154 I~eL~~~L~~l~~  166 (581)
T TIGR00475       154 IGELKKELKNLLE  166 (581)
T ss_pred             chhHHHHHHHHHH
Confidence            9999998877653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.6e-16  Score=131.86  Aligned_cols=162  Identities=9%  Similarity=0.059  Sum_probs=123.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.++|+++|-.++||||++..|.-+.....+|++...+.   .+..+++.+++||.+|++..+.+++.|+.+..++|||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            4578999999999999999999998775555665443333   3346789999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      +|..+++..+..++.+...|.... .+.|+++.+||.|++..... .......++-.--+..-.+.++||.+|.|+.+-+
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p-qei~d~leLe~~r~~~W~vqp~~a~~gdgL~egl  170 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP-QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGL  170 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH-HHHHHHhccccccCCccEeeccccccchhHHHHH
Confidence            999999888888876776665432 37899999999999987655 1111111111111111146889999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      .++.+.+
T Consensus       171 swlsnn~  177 (180)
T KOG0071|consen  171 SWLSNNL  177 (180)
T ss_pred             HHHHhhc
Confidence            9988754

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.67  E-value=4.8e-16  Score=148.99  Aligned_cols=94  Identities=13%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (507)
                      +++..+.+.+++++|++++|||++++. ++..+.. |+..+...  ++|+++|+||+||......  ..+....+. ..+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~~--~i~~vIV~NK~DL~~~~~~--~~~~~~~~~-~~g   97 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEAQ--NIEPIIVLNKIDLLDDEDM--EKEQLDIYR-NIG   97 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHHC--CCCEEEEEECcccCCCHHH--HHHHHHHHH-HCC
Confidence            466777778999999999999999887 8888875 88777654  8999999999999754332  222233332 343


Q ss_pred             ccCcEEEeCcccCCCchHHHHHH
Q 010548          149 EIETCVECSATTMIQVPDVFYYA  171 (507)
Q Consensus       149 ~~~~~~~~SA~~g~gi~~l~~~i  171 (507)
                        .+++++||++|.|++++|+.+
T Consensus        98 --~~v~~~SAktg~gi~eLf~~l  118 (245)
T TIGR00157        98 --YQVLMTSSKNQDGLKELIEAL  118 (245)
T ss_pred             --CeEEEEecCCchhHHHHHhhh
Confidence              268999999999999988654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.67  E-value=7.3e-16  Score=163.89  Aligned_cols=158  Identities=20%  Similarity=0.180  Sum_probs=103.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----CCCCeeeCCccc--------------CCceEEEEEeCCCCccch
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPP----VHAPTRLPPDFY--------------PDRVPVTIIDTSSSLENK   73 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~----~~~~~t~~~~~~--------------~~~~~~~i~Dt~G~~~~~   73 (507)
                      ...|+++|++|+|||||+|+|.+..+....+.    ....+....+..              .....+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            34699999999999999999998876443222    111111111110              011238899999999999


Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc---cch--------h---hh
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSL--------E---EV  139 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~---~~~--------~---~~  139 (507)
                      .+...+++.+|++++|+|++++.+.+...  .+..++..  ++|+++|+||+|+......   ...        .   ..
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~  159 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN  159 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence            98888999999999999999843333322  23334444  7899999999999642100   000        0   00


Q ss_pred             --------hHHHH------------HHhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548          140 --------MGPIM------------QQFREIETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       140 --------~~~~~------------~~~~~~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                              ...+.            ..++...+++++||++|+|+++|.++|..
T Consensus       160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence                    00111            02233347999999999999999988764

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.67  E-value=4.5e-16  Score=146.14  Aligned_cols=151  Identities=17%  Similarity=0.054  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC--C--------------------------CCCCCCee---eCCcccCCceEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEK--V--------------------------PPVHAPTR---LPPDFYPDRVPVT   62 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~--~--------------------------~~~~~~~t---~~~~~~~~~~~~~   62 (507)
                      +|+|+|++|+|||||+++|+...-...  .                          .....++|   ....+..++.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999986442111  0                          00002222   1123335677899


Q ss_pred             EEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--cchhhhh
Q 010548           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSLEEVM  140 (507)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~  140 (507)
                      +|||||+.++......+++.+|++|+|+|++++..-....  ....++... ..++|+|+||+|+......  ......+
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~~~~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR--HSYILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH--HHHHHHHcC-CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            9999998877666677889999999999998864322221  333344431 2457889999998753211  0112233


Q ss_pred             HHHHHHhcc-cCcEEEeCcccCCCchHH
Q 010548          141 GPIMQQFRE-IETCVECSATTMIQVPDV  167 (507)
Q Consensus       141 ~~~~~~~~~-~~~~~~~SA~~g~gi~~l  167 (507)
                      ..+...++. ..++++|||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            444455542 125899999999999853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd00880 Era_like Era (E

Probab=99.67  E-value=6.2e-16  Score=137.42  Aligned_cols=151  Identities=21%  Similarity=0.151  Sum_probs=101.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---Cccc-CCceEEEEEeCCCCccchh-------hhHHhhccCCE
Q 010548           17 VVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFY-PDRVPVTIIDTSSSLENKG-------KLNEELKRADA   85 (507)
Q Consensus        17 ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ad~   85 (507)
                      |+|.+|+|||||++++++......  ......+..   .... .....+.+|||||......       ....+++.+|+
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~   78 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIV--SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADL   78 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCcccccc--CCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence            589999999999999998764321  111112211   1111 1267899999999875543       33457899999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +++|+|+++..+.....  +.......  +.|+++|+||+|+...... .................+++++||+++.|+.
T Consensus        79 il~v~~~~~~~~~~~~~--~~~~~~~~--~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~  153 (163)
T cd00880          79 ILFVVDADLRADEEEEK--LLELLRER--GKPVLLVLNKIDLLPEEEE-EELLELRLLILLLLLGLPVIAVSALTGEGID  153 (163)
T ss_pred             EEEEEeCCCCCCHHHHH--HHHHHHhc--CCeEEEEEEccccCChhhH-HHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence            99999999987766654  44444444  7999999999999765433 1110001112222223479999999999999


Q ss_pred             HHHHHHHHH
Q 010548          166 DVFYYAQKA  174 (507)
Q Consensus       166 ~l~~~i~~~  174 (507)
                      ++++.+.+.
T Consensus       154 ~l~~~l~~~  162 (163)
T cd00880         154 ELREALIEA  162 (163)
T ss_pred             HHHHHHHhh
Confidence            999998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.67  E-value=9.2e-16  Score=141.95  Aligned_cols=150  Identities=16%  Similarity=0.141  Sum_probs=100.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCC--------C-----CCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPE--------K-----VPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK   75 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~--------~-----~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (507)
                      .++|+++|+.++|||||+++|+......        .     ......+.|   ....+..++..+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            5799999999999999999998641000        0     000112223   12234456788999999999888777


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc---c
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE---I  150 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~---~  150 (507)
                      ....+..+|++++|+|+..+......  .++..+...  ++| +|+|+||+|+...... ....+++..+...++.   .
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            78889999999999999876443332  255566665  676 7899999998643221 0122334444444432   1


Q ss_pred             CcEEEeCcccCCCch
Q 010548          151 ETCVECSATTMIQVP  165 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~  165 (507)
                      .+++++||++|.|+.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            379999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[])

Probab=99.67  E-value=6.5e-17  Score=122.87  Aligned_cols=70  Identities=47%  Similarity=0.877  Sum_probs=66.8

Q ss_pred             CCCCCccccccccCCCCccchHhHHhhhhhhhhcCHHHHHHHHHhhCCCC-----Cccccceeccccchhhhhcc
Q 010548          349 PWDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANLIYVGYGG-----DPAAALRVTRKRSVDRKKQQ  418 (507)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~d~~~~l~~l~~lg~~~-----~~~~~~~~~~~~~~~~~~~~  418 (507)
                      ||....|+.++++|+.|.||++||+|+|.|++++||+.+++||+|+||++     ++..++.|+|+|+.++++++
T Consensus         1 PW~~~~~~~~~~~n~~G~iTl~gfLa~W~l~T~ld~~~tle~L~YLGy~~~~~~~~~~~Ai~VTr~R~~d~~k~~   75 (76)
T PF08355_consen    1 PWIEPDFPDSVVTNEKGWITLQGFLAQWSLTTLLDPKRTLEYLAYLGYPGLSEQDSQTSAITVTRPRRLDRKKGQ   75 (76)
T ss_pred             CCCCCCCcceeEEcCCCcCcHHHHHHHHHHHHHhCHHHHHHHHhhcCCCCccCCCCchhheEEcCchhhhhhccC
Confidence            89889999999999999999999999999999999999999999999998     88999999999999887754

The EF hand associated region is found in yeast, vertebrates and plants.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.5e-16  Score=137.83  Aligned_cols=163  Identities=17%  Similarity=0.301  Sum_probs=130.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc-CC-ceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-PD-RVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~-~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+|++++|+.|.||||+++|.+.+.|...++++..-...+..+. +. .+++..|||+|++.+..+...++-.+.+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4689999999999999999999999999888766444333332332 22 599999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ++||++.+.++.++.. |...+.+.+.++||+++|||.|.......   ...+..   -.+..+.++++||+++.|+..-
T Consensus        88 imFdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~~k---~k~v~~---~rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARKVK---AKPVSF---HRKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EEeeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccccc---ccccee---eecccceeEEeecccccccccc
Confidence            9999999999999986 99998888889999999999998654211   011111   1111236999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 010548          168 FYYAQKAVLHPT  179 (507)
Q Consensus       168 ~~~i~~~i~~~~  179 (507)
                      |.++.+.+....
T Consensus       161 Fl~LarKl~G~p  172 (216)
T KOG0096|consen  161 FLWLARKLTGDP  172 (216)
T ss_pred             hHHHhhhhcCCC
Confidence            999999886544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.9e-15  Score=135.82  Aligned_cols=159  Identities=16%  Similarity=0.130  Sum_probs=112.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cchhhhHH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLNE   78 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~   78 (507)
                      ......|+++|++|||||||||+|++++- -+..+..|+.|....+..-+-.+.++|.||..          ....++..
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~-LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKN-LARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcc-eeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999662 23455667777555554333348999999964          23334456


Q ss_pred             hhcc---CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC--c-
Q 010548           79 ELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE--T-  152 (507)
Q Consensus        79 ~~~~---ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~-  152 (507)
                      |++.   -.++++++|+..+....+.  ..++.+...  ++|+++|+||+|.....+.   .......++.+....  . 
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~~~~  172 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPPDDQ  172 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCCccc
Confidence            6643   4678899998887555443  378888887  8999999999998875433   122333343332211  2 


Q ss_pred             -EEEeCcccCCCchHHHHHHHHHH
Q 010548          153 -CVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       153 -~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                       ++..|+..+.|++++...|.+.+
T Consensus       173 ~~~~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         173 WVVLFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             eEEEEecccccCHHHHHHHHHHHh
Confidence             78899999999999999887765

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.66  E-value=2.5e-16  Score=133.00  Aligned_cols=164  Identities=19%  Similarity=0.255  Sum_probs=126.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      -.+||.++|++.+|||||+-.++++.+.+.+..... +.. ....+....+.+.|||.+|++++.++++.+..++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            368999999999999999999999887544322111 111 333444567899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc---cchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---TSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +||.+.+.++.++.+ |+...+..+...--|+||+|-|+--.-..   .........+++-++.  +.+.||+.+..||.
T Consensus        99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA--sL~F~Sts~sINv~  175 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA--SLFFCSTSHSINVQ  175 (205)
T ss_pred             EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC--cEEEeeccccccHH
Confidence            999999999999997 99999988654444789999996433211   0223344556666654  78999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      .+|..+...+..
T Consensus       176 KIFK~vlAklFn  187 (205)
T KOG1673|consen  176 KIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHHhC
Confidence            999988777643

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.65  E-value=1.7e-15  Score=144.38  Aligned_cols=148  Identities=17%  Similarity=0.182  Sum_probs=97.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccch-------hhhHHhhccC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRA   83 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~a   83 (507)
                      +|+++|.+|||||||+|+|++......   ..+.+|   ....+...+..+++|||||+.+..       .....+++.+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~---~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVA---AYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcccc---CCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            799999999999999999998763211   111122   122233457889999999975432       1234578999


Q ss_pred             CEEEEEEeCCChhh-HHHHHHhH----------------------------------------HHHHHh-----------
Q 010548           84 DAVVLTYACNQQST-LSRLSSYW----------------------------------------LPELRR-----------  111 (507)
Q Consensus        84 d~il~V~D~~~~~s-~~~~~~~~----------------------------------------~~~l~~-----------  111 (507)
                      |++++|+|++++.. ...+.+.+                                        ...+++           
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            99999999987642 22221100                                        011111           


Q ss_pred             --------------cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          112 --------------LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       112 --------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                                    ....+|+++|+||+|+....       +...++..    .+++++||++|.|++++++.|.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~-------~~~~~~~~----~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE-------ELDLLARQ----PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCCHH-------HHHHHhcC----CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                          11237999999999986432       22233332    2589999999999999999998764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.65  E-value=7.3e-16  Score=165.15  Aligned_cols=143  Identities=18%  Similarity=0.147  Sum_probs=102.3

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchhh------hHHhh--ccCCEEE
Q 010548           19 GDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGK------LNEEL--KRADAVV   87 (507)
Q Consensus        19 G~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--~~ad~il   87 (507)
                      |++|||||||+|++++.++.   ....+++|..   ..+..++.++++|||||+.++...      ...++  +.+|+++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~---v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT---VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe---ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            89999999999999987642   2223444422   223345677999999998766543      23333  4799999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|+|+++.+.  .+  ++...+.+.  ++|+++|+||+|+.++... .  ...+.+.+.++.  +++++||++|.|++++
T Consensus        78 ~VvDat~ler--~l--~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i-~--~d~~~L~~~lg~--pvv~tSA~tg~Gi~eL  146 (591)
T TIGR00437        78 NVVDASNLER--NL--YLTLQLLEL--GIPMILALNLVDEAEKKGI-R--IDEEKLEERLGV--PVVPTSATEGRGIERL  146 (591)
T ss_pred             EEecCCcchh--hH--HHHHHHHhc--CCCEEEEEehhHHHHhCCC-h--hhHHHHHHHcCC--CEEEEECCCCCCHHHH
Confidence            9999987532  11  144444444  7999999999998765443 2  234566677763  7999999999999999


Q ss_pred             HHHHHHHH
Q 010548          168 FYYAQKAV  175 (507)
Q Consensus       168 ~~~i~~~i  175 (507)
                      ++.+.+.+
T Consensus       147 ~~~i~~~~  154 (591)
T TIGR00437       147 KDAIRKAI  154 (591)
T ss_pred             HHHHHHHh
Confidence            99998765

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.65  E-value=2.3e-15  Score=161.44  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=112.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC--C-----CCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVP--E-----KVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSL   70 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~--~-----~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~   70 (507)
                      +..+|+|+|+.++|||||+.+|+...-.  .     .+...     ..+.|+.     ..+   +..++.+++|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            3458999999999999999999864211  0     01000     1122211     111   2346889999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      ++...+..+++.+|++|+|+|++++...+.... |... ...  ++|+++|+||+|+....    .......+...++..
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~-~~~--~lpiIvViNKiDl~~a~----~~~v~~ei~~~lg~~  157 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLA-LEN--DLEIIPVLNKIDLPAAD----PERVKQEIEDVIGID  157 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHH-HHC--CCCEEEEEECCCCCccc----HHHHHHHHHHHhCCC
Confidence            999889999999999999999999866655543 4433 233  78999999999986532    122233444444321


Q ss_pred             -CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          151 -ETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       151 -~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                       ..++++||++|.|+++++++|.+.+..|.
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence             14899999999999999999998876553

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.65  E-value=2e-15  Score=165.72  Aligned_cols=232  Identities=13%  Similarity=0.058  Sum_probs=147.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCC--------------CCCeee---CCcccCCceEEEEEeCCCC
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV--------------HAPTRL---PPDFYPDRVPVTIIDTSSS   69 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~--------------~~~~t~---~~~~~~~~~~~~i~Dt~G~   69 (507)
                      ...+..+|+|+|++|+|||||+++|+...-... ....              ..++|+   ...+.+++.++.+|||||+
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~   85 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH   85 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence            344567899999999999999999985332111 1000              112221   1233467889999999999


Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (507)
                      .++......+++.+|++++|+|++++.......  ++..+++.  ++|+++|+||+|+....    .......+...++.
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~~----~~~~~~~i~~~l~~  157 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANRY--EVPRIAFVNKMDKTGAN----FLRVVNQIKQRLGA  157 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCC
Confidence            888888889999999999999999876655433  55556665  79999999999998642    23445555555543


Q ss_pred             c--CcEEEeCcccCCCchHHHHHHHHHH-cCCCCCCC-------ccchhcccHHHHHHHHHHHhhccCC------CCCcc
Q 010548          150 I--ETCVECSATTMIQVPDVFYYAQKAV-LHPTAPLF-------DHDEQTLKPRCVRALKRIFIICDHD------MDGAL  213 (507)
Q Consensus       150 ~--~~~~~~SA~~g~gi~~l~~~i~~~i-~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l  213 (507)
                      .  ...+++||.++  +..+++.+.... .++.....       .........+++..|.+.....|++      ++..+
T Consensus       158 ~~~~~~ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~  235 (689)
T TIGR00484       158 NAVPIQLPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEEL  235 (689)
T ss_pred             CceeEEeccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCC
Confidence            2  13688898877  333222222211 11110000       0011111123334444444444442      34567


Q ss_pred             ChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548          214 NDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (507)
Q Consensus       214 ~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~  249 (507)
                      +.+++....++          +++++....|+..|++.|.+.+|+-
T Consensus       236 ~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP  281 (689)
T TIGR00484       236 TIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSP  281 (689)
T ss_pred             CHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCc
Confidence            88888777665          4788999999999999999999974

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.65  E-value=1.8e-15  Score=136.27  Aligned_cols=156  Identities=17%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc----------chhhhHHhhc--
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----------NKGKLNEELK--   81 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~--   81 (507)
                      .|+++|++|||||||+|++++..+.....+.... +...........+.+|||||...          +......++.  
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGK-TQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCc-ceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            4899999999999999999965554433332211 21111111122899999999643          2233334443  


Q ss_pred             -cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           82 -RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        82 -~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                       ..+++++++|.+...+.....  ....+...  +.|+++|+||+|+.................+......+++++||++
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~  155 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDLE--MLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK  155 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHHH--HHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence             457899999988764333222  44445554  6899999999998643222011112222222112223789999999


Q ss_pred             CCCchHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKA  174 (507)
Q Consensus       161 g~gi~~l~~~i~~~  174 (507)
                      +.|+.++++.|.+.
T Consensus       156 ~~~~~~l~~~l~~~  169 (170)
T cd01876         156 GQGIDELRALIEKW  169 (170)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.65  E-value=3.4e-15  Score=140.36  Aligned_cols=164  Identities=19%  Similarity=0.199  Sum_probs=111.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh----------
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG----------   74 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~----------   74 (507)
                      ...+.+.|+++|.||||||||.|.+++.+....  +....+|   +...+..+...+.++||||...-..          
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence            345678999999999999999999999885332  2112222   4445567788999999999752211          


Q ss_pred             --hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHH
Q 010548           75 --KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGP  142 (507)
Q Consensus        75 --~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~  142 (507)
                        ....++..||++++|+|+++....-+..  .+..++.+. ++|-|+|.||+|......+          ........+
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence              2235788999999999999743333222  555666553 7899999999998764221          000111122


Q ss_pred             HHHHhcc---------------cCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          143 IMQQFRE---------------IETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       143 ~~~~~~~---------------~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +..++..               ...+|.+||++|+||+++-++|...+.
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            3333322               224899999999999999999988764

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.65  E-value=1e-15  Score=159.28  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=102.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------------------CCCCCeeeC---CcccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP----------------------------PVHAPTRLP---PDFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~----------------------------~~~~~~t~~---~~~~~~~   58 (507)
                      .+.++|+++|++++|||||+++|+...-.....                            ....++|+.   ..+..++
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            467999999999999999999998543211000                            002233322   2344668


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--cch
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--TSL  136 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~~~  136 (507)
                      +.+.+|||||++.+.......+..+|++++|+|+++..++......++..++... ..|+++|+||+|+......  ...
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~  162 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRYEEV  162 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHHHHH
Confidence            8999999999988776666678899999999999873122221111333444442 2469999999999753211  011


Q ss_pred             hhhhHHHHHHhcc---cCcEEEeCcccCCCchHHH
Q 010548          137 EEVMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (507)
Q Consensus       137 ~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l~  168 (507)
                      .+.+..+...++.   ..+++++||++|.|++++.
T Consensus       163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            2334444444442   1368999999999998754

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=5.1e-16  Score=129.94  Aligned_cols=88  Identities=22%  Similarity=0.349  Sum_probs=82.4

Q ss_pred             cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      +.-++.+|+.|+|++.||||||+.|+++..|.+.+..|.|.+|.++++.-+.+.+++++|||+|+++|+.+.  -.|||+
T Consensus        16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiT--TayyRg   93 (193)
T KOG0093|consen   16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTIT--TAYYRG   93 (193)
T ss_pred             ccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHH--HHHhhc
Confidence            345677999999999999999999999999999999999999999999988889999999999999999988  689999


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      |+++|||||+
T Consensus        94 amgfiLmyDi  103 (193)
T KOG0093|consen   94 AMGFILMYDI  103 (193)
T ss_pred             cceEEEEEec
Confidence            9999999996

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.64  E-value=2.5e-15  Score=142.04  Aligned_cols=153  Identities=20%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------CCCCeee-----CCc----------------------cc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPP-----------VHAPTRL-----PPD----------------------FY   55 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-----------~~~~~t~-----~~~----------------------~~   55 (507)
                      ||+++|+.++|||||+++|..+.+......           ...+.+.     ...                      +.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997665432110           0011111     000                      11


Q ss_pred             CCceEEEEEeCCCCccchhhhHHhhc--cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548           56 PDRVPVTIIDTSSSLENKGKLNEELK--RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (507)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~--~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~  133 (507)
                      ..+..+.++||||++.+.......+.  .+|++++|+|++.+.+....  .++..+...  ++|+++|+||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~~--~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALAL--NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEECccccCHHHH
Confidence            23567999999999887665555554  78999999999877544333  367777766  7899999999998653222


Q ss_pred             cchhhhhHHHHHHh---------------------------cccCcEEEeCcccCCCchHHHHHHHH
Q 010548          134 TSLEEVMGPIMQQF---------------------------REIETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       134 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                         ......+.+.+                           +...|++.+||.+|.|+++|...|..
T Consensus       157 ---~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 ---QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ---HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence               22222222222                           22348999999999999999987743

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.63  E-value=4.2e-15  Score=155.07  Aligned_cols=156  Identities=13%  Similarity=0.082  Sum_probs=115.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccc------hhhhHHhh-
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLEN------KGKLNEEL-   80 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~-   80 (507)
                      +..+|+++|+||||||||+|+|++.+.   .....+++|   ....+..++.+++++|.||....      +...+.++ 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q---~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQ---KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCc---eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            456799999999999999999998763   445555677   33445566778999999996532      22333444 


Q ss_pred             -ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        81 -~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                       ...|+++-|+|+++-+.--.    +--++.+.  ++|++++.|++|....... .  -..+.+.+.+|.  |++++||+
T Consensus        79 ~~~~D~ivnVvDAtnLeRnLy----ltlQLlE~--g~p~ilaLNm~D~A~~~Gi-~--ID~~~L~~~LGv--PVv~tvA~  147 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNLY----LTLQLLEL--GIPMILALNMIDEAKKRGI-R--IDIEKLSKLLGV--PVVPTVAK  147 (653)
T ss_pred             cCCCCEEEEEcccchHHHHHH----HHHHHHHc--CCCeEEEeccHhhHHhcCC-c--ccHHHHHHHhCC--CEEEEEee
Confidence             46799999999998743221    33345555  8999999999998876554 2  234667777874  79999999


Q ss_pred             cCCCchHHHHHHHHHHcCCCC
Q 010548          160 TMIQVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~~~~  180 (507)
                      +|.|++++.+.+.+....+..
T Consensus       148 ~g~G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         148 RGEGLEELKRAIIELAESKTT  168 (653)
T ss_pred             cCCCHHHHHHHHHHhcccccc
Confidence            999999999999887655543

>PRK10218 GTP-binding protein; Provisional

Probab=99.63  E-value=5.6e-15  Score=157.69  Aligned_cols=164  Identities=13%  Similarity=0.111  Sum_probs=113.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCC-----------CCCCeee---CCcccCCceEEEEEeCCCCccchh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPP-----------VHAPTRL---PPDFYPDRVPVTIIDTSSSLENKG   74 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~-----------~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~   74 (507)
                      ...+|+|+|+.++|||||+++|+..  .+......           ...+.++   ...+.++++++++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            3468999999999999999999973  33221110           0112221   223446789999999999999999


Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-----
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----  149 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----  149 (507)
                      .+..+++.+|++|+|+|++++...+...  ++..+...  ++|+++|+||+|+...+.. .....+..+...++.     
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~--~l~~a~~~--gip~IVviNKiD~~~a~~~-~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTRF--VTKKAFAY--GLKPIVVINKVDRPGARPD-WVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHHH--HHHHHHHc--CCCEEEEEECcCCCCCchh-HHHHHHHHHHhccCcccccc
Confidence            9999999999999999998874443322  44455555  7899999999998765332 112222222211111     


Q ss_pred             cCcEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 010548          150 IETCVECSATTMI----------QVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       150 ~~~~~~~SA~~g~----------gi~~l~~~i~~~i~~~~  179 (507)
                      ..+++.+||++|.          |+..+++.|...+..|.
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            1368999999998          58899999988876553

>PRK00007 elongation factor G; Reviewed

Probab=99.63  E-value=4.5e-15  Score=162.73  Aligned_cols=233  Identities=12%  Similarity=0.084  Sum_probs=150.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CC------------CCCCeee---CCcccCCceEEEEEeCCCCc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-V--PP------------VHAPTRL---PPDFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~--~~------------~~~~~t~---~~~~~~~~~~~~i~Dt~G~~   70 (507)
                      ..+..+|+|+|++|+|||||+++|+...-... .  ..            ...++|+   ...+.+.+..++++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            44567999999999999999999974221110 0  00            1122222   12334668899999999988


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      ++.......++.+|++|+|+|+..+...+...  .+..+.+.  ++|+|+++||+|+....    .......+...++..
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~~--~~p~iv~vNK~D~~~~~----~~~~~~~i~~~l~~~  158 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQADKY--KVPRIAFVNKMDRTGAD----FYRVVEQIKDRLGAN  158 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCC
Confidence            87777788899999999999998875555433  56666666  78999999999988642    334556666666552


Q ss_pred             --CcEEEeCcccC-CCchHHHHHHHHHHc-CCCCCCCc-----cchhcccHHHHHHHHHHHhhccCC------CCCccCh
Q 010548          151 --ETCVECSATTM-IQVPDVFYYAQKAVL-HPTAPLFD-----HDEQTLKPRCVRALKRIFIICDHD------MDGALND  215 (507)
Q Consensus       151 --~~~~~~SA~~g-~gi~~l~~~i~~~i~-~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~  215 (507)
                        ...+++||..+ .|+.+++........ ......+.     ........+++..|-.....+|++      ++..++.
T Consensus       159 ~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~  238 (693)
T PRK00007        159 PVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTE  238 (693)
T ss_pred             eeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCH
Confidence              24688999887 556555532221110 00000000     000111112333333333334322      3567888


Q ss_pred             hhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548          216 AELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (507)
Q Consensus       216 ~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~  249 (507)
                      +++....++          +|+++....|++.+++.|.+.+|+-
T Consensus       239 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP  282 (693)
T PRK00007        239 EEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSP  282 (693)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCCh
Confidence            898888774          6788999999999999999999974

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.63  E-value=3.8e-15  Score=159.97  Aligned_cols=159  Identities=14%  Similarity=0.132  Sum_probs=106.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc----cCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF----YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      +-|+++|+.++|||||+++|++............+.|+...+    ..++..+.+|||||++.|.......+..+|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            358999999999999999999744211111222344433222    1245678999999998887777788999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCccchhhhhHHHHHHhcc-cCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~  166 (507)
                      |+|++++...+...  .+..++..  ++| +|+|+||+|+.+........+.+..+....+. ..+++++||++|.|+++
T Consensus        81 VVda~eg~~~qT~e--hl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVMAQTRE--HLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            99998853332222  33344444  456 57999999997532220112233333333321 23799999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +++.|.+..
T Consensus       157 L~~~L~~~~  165 (614)
T PRK10512        157 LREHLLQLP  165 (614)
T ss_pred             HHHHHHHhh
Confidence            999998754

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.63  E-value=2.1e-15  Score=155.50  Aligned_cols=164  Identities=15%  Similarity=0.115  Sum_probs=104.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc-----------------------ccC------CceE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD-----------------------FYP------DRVP   60 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~-----------------------~~~------~~~~   60 (507)
                      ++.++|+++|.+++|||||+++|.+............+.|+...                       .+.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45789999999999999999999764221111111111111110                       011      2468


Q ss_pred             EEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh
Q 010548           61 VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV  139 (507)
Q Consensus        61 ~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~  139 (507)
                      +.+|||||+++|...+...+..+|++++|+|++++. ..+. .+ .+..+...+ .+|+++|+||+|+.+........+.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e-~l~~l~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KE-HLMALEIIG-IKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HH-HHHHHHHcC-CCeEEEEEEccccCCHHHHHHHHHH
Confidence            999999999988887778888999999999999753 1111 11 223333332 3579999999999754221001122


Q ss_pred             hHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          140 MGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +..+.... ....+++++||++|.|++++++.|...+.
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            22222221 11236899999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=6.6e-16  Score=128.17  Aligned_cols=86  Identities=22%  Similarity=0.437  Sum_probs=81.8

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ..+.||.+|||+.|||||+|+++|..++|...-+.|+|+.|..+.+.+.|.+++++||||+|+++|+.+.  ++|||+|.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravt--rsyyrgaa   85 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAA   85 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHH--HHHhcccc
Confidence            3567999999999999999999999999999999999999999999999999999999999999999988  78999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      +.++|||+
T Consensus        86 galmvydi   93 (215)
T KOG0097|consen   86 GALMVYDI   93 (215)
T ss_pred             ceeEEEEe
Confidence            99999996

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.62  E-value=2.8e-16  Score=133.80  Aligned_cols=84  Identities=27%  Similarity=0.408  Sum_probs=77.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +.+++++||++-||||||+++|..++|..-++||.|++|..+.+... |..+++++||||||++|+++.  .+|||++-+
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsit--ksyyrnsvg   84 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSIT--KSYYRNSVG   84 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHH--HHHhhcccc
Confidence            56899999999999999999999999999999999999887766555 678899999999999999998  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        85 vllvydi   91 (213)
T KOG0091|consen   85 VLLVYDI   91 (213)
T ss_pred             eEEEEec
Confidence            9999996

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=9e-16  Score=132.51  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=117.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC---C----CCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESV---P----EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~---~----~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (507)
                      ...+.|+|+|..|+|||||+.++-....   .    ..+.++..-  ....+...+..+.+||.+|++..++++..||..
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence            3468899999999999999988754321   0    112221111  112233347789999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-cCcEEEeCccc
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IETCVECSATT  160 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~  160 (507)
                      ++++|+|+|+++++.++.....+-..+.+. -.++|+++.+||.|+.+......... ....+...+. .+++.+|||.+
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~-~~~~~e~~~~rd~~~~pvSal~  171 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDG-VFGLAELIPRRDNPFQPVSALT  171 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHH-HhhhhhhcCCccCccccchhhh
Confidence            999999999999988887766444444332 24899999999999987644411111 1111223322 24789999999


Q ss_pred             CCCchHHHHHHHHHHcCC
Q 010548          161 MIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~~  178 (507)
                      |+||++-.+|+.+.+...
T Consensus       172 gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  172 GEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cccHHHHHHHHHHHHhhc
Confidence            999999999999887543

>cd01858 NGP_1 NGP-1

Probab=99.62  E-value=1.6e-14  Score=129.45  Aligned_cols=90  Identities=9%  Similarity=0.031  Sum_probs=58.4

Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      ...++++|++++|+|++++.....  ..+...+.....++|+|+|.||+|+..+..   .......+.+.+..  ..+.+
T Consensus         3 ~~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~---~~~~~~~~~~~~~~--~~~~i   75 (157)
T cd01858           3 YKVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV---TARWVKILSKEYPT--IAFHA   75 (157)
T ss_pred             hHhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH---HHHHHHHHhcCCcE--EEEEe
Confidence            356789999999999998743222  124455554433689999999999964311   11122222222211  24789


Q ss_pred             CcccCCCchHHHHHHHH
Q 010548          157 SATTMIQVPDVFYYAQK  173 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~  173 (507)
                      ||+++.|++++++.+..
T Consensus        76 Sa~~~~~~~~L~~~l~~   92 (157)
T cd01858          76 SINNPFGKGSLIQLLRQ   92 (157)
T ss_pred             eccccccHHHHHHHHHH
Confidence            99999999998887643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.61  E-value=5.5e-15  Score=157.96  Aligned_cols=162  Identities=15%  Similarity=0.161  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC--CCCCC-CC----------CCCCeeeC---CcccCCceEEEEEeCCCCccchhhh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATES--VPEKV-PP----------VHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKL   76 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~--~~~~~-~~----------~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~   76 (507)
                      .+|+|+|+.++|||||+++|+...  +.... ..          ...+.|+.   ..+.++++++++|||||+.+|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            379999999999999999998632  21111 00          01122221   2345678999999999999998888


Q ss_pred             HHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-----cC
Q 010548           77 NEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-----IE  151 (507)
Q Consensus        77 ~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~  151 (507)
                      ..+++.+|++++|+|++++...+. . .|+..+...  ++|+|+|+||+|+...+.. ....++..+...++.     ..
T Consensus        82 ~~~l~~aD~alLVVDa~~G~~~qT-~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGPMPQT-R-FVLKKALEL--GLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCCcHHH-H-HHHHHHHHC--CCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccccccccC
Confidence            999999999999999987643222 2 366666665  7899999999998754322 112222222222211     13


Q ss_pred             cEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 010548          152 TCVECSATTMI----------QVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       152 ~~~~~SA~~g~----------gi~~l~~~i~~~i~~~~  179 (507)
                      +++++||++|.          |+..+|+.|.+.+..|.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence            68999999996          79999999999876553

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04167 Snu114p Snu114p subfamily

Probab=99.61  E-value=5.4e-15  Score=139.38  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCC-----CCCeeeC---Ccc-----cCCceEEEEEeCCCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPV-----HAPTRLP---PDF-----YPDRVPVTIIDTSSS   69 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~-----------~~~-----~~~~t~~---~~~-----~~~~~~~~i~Dt~G~   69 (507)
                      +|+|+|+.|+|||||+++|+........           ...     ..+.++.   ..+     ....+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6999999999999999999976543221           000     0011110   011     134588999999999


Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC----------ccchhhh
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEV  139 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~  139 (507)
                      .++......++..+|++++|+|+++..+....  .++..+...  ++|+++|+||+|+.....          .....+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            98888888899999999999999988766442  255555544  689999999999852110          0001122


Q ss_pred             hHHHHHHhcc-----cC----cEEEeCcccCCCch--------HHHHHHHHH
Q 010548          140 MGPIMQQFRE-----IE----TCVECSATTMIQVP--------DVFYYAQKA  174 (507)
Q Consensus       140 ~~~~~~~~~~-----~~----~~~~~SA~~g~gi~--------~l~~~i~~~  174 (507)
                      +..++..++.     ..    .+++.||+.+-++.        ++++.|.+.
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~  209 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN  209 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence            3333333322     01    27789999988776        555555443

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.61  E-value=8.2e-15  Score=151.04  Aligned_cols=167  Identities=14%  Similarity=0.138  Sum_probs=104.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc-----------------c------C------Cc
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-----------------Y------P------DR   58 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~-----------------~------~------~~   58 (507)
                      ...+.++|+++|+.++|||||+.+|.+............+.|+...+                 .      .      ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            34567999999999999999999996532111111111122221111                 0      0      03


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~  137 (507)
                      ..+.+|||||++++..........+|++++|+|++++. ..+...  .+..++... ..|+++|+||+|+.+........
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l~~l~~~~-i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE--HLMALDIIG-IKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH--HHHHHHHcC-CCcEEEEEEeeccccchhHHHHH
Confidence            68999999998877665556667789999999999653 222222  222333331 24799999999997643220111


Q ss_pred             hhhHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          138 EVMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       138 ~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      +.+..+.... ....+++++||++|.|++++++.|.+.+..
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            2222332221 112378999999999999999999886643

>PRK13351 elongation factor G; Reviewed

Probab=99.61  E-value=1.1e-14  Score=160.38  Aligned_cols=232  Identities=13%  Similarity=0.091  Sum_probs=144.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------CC------CCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP---------PV------HAPTRLP---PDFYPDRVPVTIIDTSSSLE   71 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~---------~~------~~~~t~~---~~~~~~~~~~~i~Dt~G~~~   71 (507)
                      ....+|+|+|+.|+|||||+++|+.........         .+      ..+.|+.   ..+.+.+..+++|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            456799999999999999999998643111000         00      0111211   13346688999999999998


Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE  151 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (507)
                      +......+++.+|++++|+|++++.+.....  .+..+...  ++|+++|+||+|+...    ........+...++...
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~--~~~~~~~~--~~p~iiviNK~D~~~~----~~~~~~~~i~~~l~~~~  157 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET--VWRQADRY--GIPRLIFINKMDRVGA----DLFKVLEDIEERFGKRP  157 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHhc--CCCEEEEEECCCCCCC----CHHHHHHHHHHHHCCCe
Confidence            8888899999999999999999887666543  44555555  7999999999998764    24455566666666532


Q ss_pred             cEEEeCcccCCCchHHHHHHHHHH-cCCCC---CCC-----ccchhcccHHHHHHHHHHHhhccCC------CCCccChh
Q 010548          152 TCVECSATTMIQVPDVFYYAQKAV-LHPTA---PLF-----DHDEQTLKPRCVRALKRIFIICDHD------MDGALNDA  216 (507)
Q Consensus       152 ~~~~~SA~~g~gi~~l~~~i~~~i-~~~~~---~~~-----~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~  216 (507)
                      -.+......+.++..+.+.+.... .....   ...     .........+++..+-..+..+|++      ++..++.+
T Consensus       158 ~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~  237 (687)
T PRK13351        158 LPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAE  237 (687)
T ss_pred             EEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHH
Confidence            223333333433322222111111 00000   000     0000011112233333333333332      35678888


Q ss_pred             hhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548          217 ELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (507)
Q Consensus       217 el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~  249 (507)
                      +++...++          +|+++....|++.|++.|...+|+-
T Consensus       238 ~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP  280 (687)
T PRK13351        238 QLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSP  280 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCCh
Confidence            88888775          6788999999999999999999974

>cd01859 MJ1464 MJ1464

Probab=99.61  E-value=1.6e-14  Score=129.32  Aligned_cols=92  Identities=14%  Similarity=0.014  Sum_probs=61.4

Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (507)
                      ..+.+..++++|++++|+|++++.+....  .+...+...  ++|+++|+||+|+......    .....+....+  .+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~~----~~~~~~~~~~~--~~   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEVL----EKWKSIKESEG--IP   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHHH----HHHHHHHHhCC--Cc
Confidence            34566778889999999999886543332  144444433  6899999999998542111    11112222222  26


Q ss_pred             EEEeCcccCCCchHHHHHHHHH
Q 010548          153 CVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      ++.+||+++.|++++++.+.+.
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~~   94 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKEL   94 (156)
T ss_pred             EEEEEccccccHHHHHHHHHHH
Confidence            8999999999999999887553

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=4.1e-15  Score=124.15  Aligned_cols=160  Identities=14%  Similarity=0.147  Sum_probs=120.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +..++.++|--|+|||++..++.-.+.....|+......   .+..++.++++||.+|+-..+..++.|+.+.|++|+|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV   93 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV   93 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence            678999999999999999999987776666666443332   33457899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCcc--chhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNAT--SLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |.+|+....-....+...+++.. .+..+++++||.|........  .....+..+.++   +..++++||.+|+|+++.
T Consensus        94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r---~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR---IWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh---eeEEEeeccccccCCcHH
Confidence            99998766555554666665432 367889999999987642220  011111222222   237899999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      ++|+++.+.
T Consensus       171 ~DWL~~~l~  179 (182)
T KOG0072|consen  171 MDWLQRPLK  179 (182)
T ss_pred             HHHHHHHHh
Confidence            999988653

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.60  E-value=5.3e-15  Score=123.07  Aligned_cols=161  Identities=15%  Similarity=0.209  Sum_probs=118.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+.+||.++|-.|+|||||+..|.+.....-.++.... +..+.+ .+.+++++||.+|+...+..+..|+.+.|++|+
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn-~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN-TKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc-eEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            467899999999999999999999887632223332222 222222 346899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHH--HHHhcccCcEEEeCcccCCCch
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPI--MQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|.+|..-|+++.+.+.+.+.... ..+|+++.+||.|+.....+   ++....+  ..--.....+-+|||.+++|+.
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            9999999999988876666665432 36999999999998765443   1111111  1000111257899999999999


Q ss_pred             HHHHHHHHH
Q 010548          166 DVFYYAQKA  174 (507)
Q Consensus       166 ~l~~~i~~~  174 (507)
                      .-.+++++.
T Consensus       169 dg~~wv~sn  177 (185)
T KOG0074|consen  169 DGSDWVQSN  177 (185)
T ss_pred             CcchhhhcC
Confidence            999988764

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=3.8e-14  Score=124.50  Aligned_cols=159  Identities=18%  Similarity=0.146  Sum_probs=119.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCC----CCCCeeeCCccc----CCceEEEEEeCCCCccchhhhH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPP----VHAPTRLPPDFY----PDRVPVTIIDTSSSLENKGKLN   77 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~----~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~   77 (507)
                      .....||+|+|+.++||||++.++........   .+.    ....+|...++.    .++..+.++||||++++..++.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence            45678999999999999999999998763111   111    112355555554    3457899999999999999999


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      .+.+++.++|+++|.+.+.++ +... +++.+....+ +|+++++||.|+.+....    +.+.++.+.-....+.++++
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~~~-ip~vVa~NK~DL~~a~pp----e~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSRNP-IPVVVAINKQDLFDALPP----EKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhccC-CCEEEEeeccccCCCCCH----HHHHHHHHhccCCCceeeee
Confidence            999999999999999999988 3332 7777776632 999999999999886544    33333332221123799999


Q ss_pred             cccCCCchHHHHHHHHH
Q 010548          158 ATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~  174 (507)
                      |..++|..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999988887765

>cd04120 Rab12 Rab12 subfamily

Probab=99.60  E-value=3.7e-15  Score=138.80  Aligned_cols=82  Identities=22%  Similarity=0.420  Sum_probs=76.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      ++|+++|++|||||||+++|+++.|...+.+|.+.++..+.+.+++...++.+|||+|+++|.+++  ..|+++||++++
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~--~~y~~~ad~iIl   78 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSAKGIIL   78 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH--HHHhcCCCEEEE
Confidence            379999999999999999999999999999999988888888888778899999999999999988  789999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 VfDv   82 (202)
T cd04120          79 VYDI   82 (202)
T ss_pred             EEEC
Confidence            9996

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.59  E-value=4.3e-15  Score=154.54  Aligned_cols=159  Identities=18%  Similarity=0.134  Sum_probs=102.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCCC----------C----------------CCCCCeee---CCcccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKV----------P----------------PVHAPTRL---PPDFYPD   57 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~~----------~----------------~~~~~~t~---~~~~~~~   57 (507)
                      ..+.++|+++|+.++|||||+++|+...  .....          .                ....++|+   ...+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            4567899999999999999999998632  11000          0                00112221   1234456


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHH-hHHHHHHhcCCCCcEEEEEecccCCCCCCc--c
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS-YWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T  134 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~-~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~  134 (507)
                      ++.+.+|||||++++.......+..+|++++|+|++++.+...... .+....+.. ...|+|+|+||+|+.+....  .
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence            7899999999988877666677899999999999998854321111 122223333 23579999999999742211  0


Q ss_pred             chhhhhHHHHHHhcc---cCcEEEeCcccCCCchHHH
Q 010548          135 SLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (507)
Q Consensus       135 ~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l~  168 (507)
                      ....++..+.+..+.   ..++++|||++|.|+.+.+
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            112344455555542   2378999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=3.6e-14  Score=155.81  Aligned_cols=230  Identities=12%  Similarity=0.100  Sum_probs=143.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CC------------CCCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-V--PP------------VHAPTRLP---PDFYPDRVPVTIIDTSSSLE   71 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~--~~------------~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~   71 (507)
                      .+..+|+|+|++|+|||||+++|+...-... .  ..            ...++|+.   ..+.+++.++.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            4567899999999999999999985321110 0  00            11222321   23346788999999999988


Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-  150 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-  150 (507)
                      +...+..+++.+|++|+|+|+.++......  .++..+.+.  ++|+|+++||+|+....    .......+...++.. 
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~~----~~~~~~~i~~~l~~~~  157 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGAD----FFRSVEQIKDRLGANA  157 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHhCCCc
Confidence            877888899999999999999887544433  356666665  78999999999998642    334445555555431 


Q ss_pred             -CcEEEeCcccCCC-chHHHHHHHHHHcCCCC---CCCc--cchhcccH---HHHHHHHHHHhhccCC------CCCccC
Q 010548          151 -ETCVECSATTMIQ-VPDVFYYAQKAVLHPTA---PLFD--HDEQTLKP---RCVRALKRIFIICDHD------MDGALN  214 (507)
Q Consensus       151 -~~~~~~SA~~g~g-i~~l~~~i~~~i~~~~~---~~~~--~~~~~~~~---~~~~~l~~~~~~~d~~------~d~~l~  214 (507)
                       ...+++|+..+.+ +-++...-..  .....   ..+.  .......+   +++..|-+....+|.+      ++..++
T Consensus       158 ~~~~iPis~~~~f~g~vd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~  235 (691)
T PRK12739        158 VPIQLPIGAEDDFKGVIDLIKMKAI--IWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEIT  235 (691)
T ss_pred             eeEEecccccccceEEEEcchhhhh--hccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCC
Confidence             2357889877642 2222221111  11110   0000  00001111   2222333333333332      234577


Q ss_pred             hhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548          215 DAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (507)
Q Consensus       215 ~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~  249 (507)
                      .++++...++          +++++....+++.+++.|.+.+|+-
T Consensus       236 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP  280 (691)
T PRK12739        236 EEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSP  280 (691)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCCh
Confidence            7888877774          7788999999999999999999974

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.58  E-value=3.6e-14  Score=132.00  Aligned_cols=159  Identities=16%  Similarity=0.163  Sum_probs=99.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCC-ccc-CCceEEEEEeCCCCccchhhhHH-----hhcc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPP-DFY-PDRVPVTIIDTSSSLENKGKLNE-----ELKR   82 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~-~~~-~~~~~~~i~Dt~G~~~~~~~~~~-----~~~~   82 (507)
                      .+||+++|++|||||||+|+|++..+...  .+.....++... .+. .....+.+|||||..........     .+.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            37999999999999999999998664332  111111112111 111 11346899999998643332222     2577


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc------chhhhhH----HHHHHhc----
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT------SLEEVMG----PIMQQFR----  148 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~------~~~~~~~----~~~~~~~----  148 (507)
                      +|++++|.|  ++  +...+..|++.+++.  ++|+++|+||+|+.......      ...+...    .+...++    
T Consensus        81 ~d~~l~v~~--~~--~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS--TR--FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC--CC--CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            899999854  22  444444588888877  78999999999985321100      0111111    2222221    


Q ss_pred             ccCcEEEeCcc--cCCCchHHHHHHHHHHc
Q 010548          149 EIETCVECSAT--TMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       149 ~~~~~~~~SA~--~g~gi~~l~~~i~~~i~  176 (507)
                      ...++|.+|+.  .+.|+..+.+.+...+.
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~  184 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLP  184 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence            22378999998  67999999999988764

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.58  E-value=9e-15  Score=134.13  Aligned_cols=83  Identities=20%  Similarity=0.310  Sum_probs=74.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.|...+.||.+..+ .+.+.+++...++.+|||+|+++|..++  ..++++||++
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~--~~~~~~ad~~   80 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDAV   80 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhh--hhhcCCCCEE
Confidence            458999999999999999999999999999999988666 4567777788899999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        81 ilvyDi   86 (182)
T cd04172          81 LICFDI   86 (182)
T ss_pred             EEEEEC
Confidence            999996

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.57  E-value=3.3e-14  Score=151.98  Aligned_cols=156  Identities=22%  Similarity=0.254  Sum_probs=100.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CCCeeeCCccc----CCc-----e-----EEEEEeCCCCccc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HAPTRLPPDFY----PDR-----V-----PVTIIDTSSSLEN   72 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~----~~~~t~~~~~~----~~~-----~-----~~~i~Dt~G~~~~   72 (507)
                      +...|+++|++|+|||||+++|.+.......+..    ...+..+....    ...     .     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            3457999999999999999999876543322211    11111111100    000     1     2789999999999


Q ss_pred             hhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--c-c-----------
Q 010548           73 KGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T-S-----------  135 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~---~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~-~-----------  135 (507)
                      ..++...++.+|++++|+|+++   +.+++.+     ..++..  ++|+++++||+|+......  . .           
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            8888888899999999999998   4444443     334444  7999999999998521000  0 0           


Q ss_pred             hhh----hhHH---HHH-------------HhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548          136 LEE----VMGP---IMQ-------------QFREIETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       136 ~~~----~~~~---~~~-------------~~~~~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                      ...    ....   ...             .++...+++++||++|.|++++++.+..
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            000    0000   111             1122237899999999999999988754

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.57  E-value=5.6e-15  Score=139.78  Aligned_cols=149  Identities=16%  Similarity=0.090  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------CC--CCCCCee---eCCcccCCceEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEK--------------------------VP--PVHAPTR---LPPDFYPDRVPVT   62 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~--------------------------~~--~~~~~~t---~~~~~~~~~~~~~   62 (507)
                      +|+++|++++|||||+.+|+...-...                          ..  ....++|   ....+...+.++.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999974321100                          00  0011122   1123345788999


Q ss_pred             EEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-------hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC--Cc
Q 010548           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-------TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--NA  133 (507)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-------s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~--~~  133 (507)
                      +|||||+..+.......++.+|++|+|+|++++.       ..+. .. ........ ..+|+++|+||+|+....  ..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQT-RE-HALLARTL-GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccch-HH-HHHHHHHc-CCCeEEEEEEccccccccccHH
Confidence            9999998777766667788999999999999852       1111 11 22233333 137899999999997421  11


Q ss_pred             --cchhhhhHHHHHHhcc---cCcEEEeCcccCCCch
Q 010548          134 --TSLEEVMGPIMQQFRE---IETCVECSATTMIQVP  165 (507)
Q Consensus       134 --~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~  165 (507)
                        ......+..+...++.   ..++++|||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence              0111222223333332   1369999999999988

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01855 YqeH YqeH

Probab=99.57  E-value=3.6e-14  Score=131.30  Aligned_cols=93  Identities=17%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHH-----HH
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQ  146 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~  146 (507)
                      +..++..+++++|++++|+|+++....      |...+.....++|+++|+||+|+......   ......+.     ..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~   94 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKDKN---LVRIKNWLRAKAAAG   94 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCCCC---HHHHHHHHHHHHHhh
Confidence            466778899999999999999876421      22222222347899999999999753222   11122222     11


Q ss_pred             hcc-cCcEEEeCcccCCCchHHHHHHHH
Q 010548          147 FRE-IETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       147 ~~~-~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                      .+. ...++++||++|.|++++++.|.+
T Consensus        95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~  122 (190)
T cd01855          95 LGLKPKDVILISAKKGWGVEELINAIKK  122 (190)
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHH
Confidence            111 125899999999999999988754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.57  E-value=1.4e-14  Score=124.72  Aligned_cols=136  Identities=21%  Similarity=0.256  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc----chhhhHHhhccCCEEEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGKLNEELKRADAVVLT   89 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~~~~~~ad~il~V   89 (507)
                      ||++||+.|+|||||+++|.+...  .+..     |....+     .=.++||||---    +...+.....+||+|++|
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~K-----Tq~i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll   70 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKK-----TQAIEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLL   70 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCc-----cceeEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence            799999999999999999998662  2211     111111     124599999321    111222445799999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      .|++++.+.-.      +.+.+.. ++|+|=|+||+|+......   .+....+.+.-|. ..+|++|+.+|+||++|.+
T Consensus        71 ~dat~~~~~~p------P~fa~~f-~~pvIGVITK~Dl~~~~~~---i~~a~~~L~~aG~-~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   71 QDATEPRSVFP------PGFASMF-NKPVIGVITKIDLPSDDAN---IERAKKWLKNAGV-KEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             ecCCCCCccCC------chhhccc-CCCEEEEEECccCccchhh---HHHHHHHHHHcCC-CCeEEEECCCCcCHHHHHH
Confidence            99998754322      2222222 6899999999999843221   2334445555554 3679999999999999999


Q ss_pred             HHH
Q 010548          170 YAQ  172 (507)
Q Consensus       170 ~i~  172 (507)
                      +|.
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01892 Miro2 Miro2 subfamily

Probab=99.57  E-value=1.2e-14  Score=131.97  Aligned_cols=85  Identities=42%  Similarity=0.698  Sum_probs=76.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCC-CCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ++++||+++|++|||||||+++|+++.+. ..|.+|.+.++..+.+.+++....+.+||++|++++..++  ..++++||
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~d   79 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN--DAELAACD   79 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc--hhhhhcCC
Confidence            57899999999999999999999999998 8888999988887888888777788999999999988776  67889999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        80 ~~llv~d~   87 (169)
T cd01892          80 VACLVYDS   87 (169)
T ss_pred             EEEEEEeC
Confidence            99999995

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04121 Rab40 Rab40 subfamily

Probab=99.57  E-value=1.3e-14  Score=133.80  Aligned_cols=85  Identities=20%  Similarity=0.302  Sum_probs=77.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|.++++...+.++.+.++....+..++...++.+|||+|+++|..++  ..++++||+
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~--~~~~~~ad~   81 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF--RSYSRGAQG   81 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhcCCCE
Confidence            356999999999999999999999999988888888888877778888778899999999999999988  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        82 illVfD~   88 (189)
T cd04121          82 IILVYDI   88 (189)
T ss_pred             EEEEEEC
Confidence            9999995

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04128 Spg1 Spg1p

Probab=99.57  E-value=1.2e-14  Score=133.57  Aligned_cols=82  Identities=20%  Similarity=0.331  Sum_probs=75.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.+|.+.++..+.+..++...++.+|||+|+++|..++  ..++++||++++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~iil   78 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML--PLVCNDAVAILF   78 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh--HHHCcCCCEEEE
Confidence            589999999999999999999999998899999988877788888778899999999999999887  679999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~D~   82 (182)
T cd04128          79 MFDL   82 (182)
T ss_pred             EEEC
Confidence            9995

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.57  E-value=3e-14  Score=134.94  Aligned_cols=151  Identities=20%  Similarity=0.263  Sum_probs=109.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc---cCC-ceEEEEEeCCCCccchhhh-------HHhhc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF---YPD-RVPVTIIDTSSSLENKGKL-------NEELK   81 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~---~~~-~~~~~i~Dt~G~~~~~~~~-------~~~~~   81 (507)
                      ..|.+||-||+|||||+|+|...+  +.+. ..+-+|+...+   ..+ ...+.+-|.||..+...+.       -..++
T Consensus       197 advGLVG~PNAGKSTLL~als~AK--pkVa-~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAK--PKVA-HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccC--Cccc-ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence            458899999999999999999877  3222 22223322222   122 3349999999987544433       26789


Q ss_pred             cCCEEEEEEeCCCh---hhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           82 RADAVVLTYACNQQ---STLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        82 ~ad~il~V~D~~~~---~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      .|+..+||+|++.+   ..++.+.. +..+++.+.   .+.|.++|+||+|+++.     ....+..++..+... .+++
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~-~V~p  346 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNP-HVVP  346 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCC-cEEE
Confidence            99999999999998   77777775 666666543   47999999999998642     222346677777653 4899


Q ss_pred             eCcccCCCchHHHHHHHH
Q 010548          156 CSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~  173 (507)
                      +||++++|+.++.+.|.+
T Consensus       347 vsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  347 VSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             eeeccccchHHHHHHHhh
Confidence            999999999999988754

>PRK12736 elongation factor Tu; Reviewed

Probab=99.56  E-value=4.2e-14  Score=145.28  Aligned_cols=164  Identities=14%  Similarity=0.177  Sum_probs=108.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC---C----------CCCCCCCeee---CCcccCCceEEEEEeCCCCccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE---K----------VPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~---~----------~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~   72 (507)
                      ..+.++|+++|+.++|||||+++|++.....   .          ......+.|+   ...+..++..+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4567999999999999999999998632100   0          0001122231   1233345678999999998888


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCcc-chhhhhHHHHHHhcc-
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE-  149 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~-  149 (507)
                      .......+..+|++++|+|++.+.......  ++..+...  ++| +|+|+||+|+.+..... ...+++..+...++. 
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~--~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            776677778999999999998764333322  45556655  678 67899999987432220 112234444444442 


Q ss_pred             --cCcEEEeCcccCC--------CchHHHHHHHHHHc
Q 010548          150 --IETCVECSATTMI--------QVPDVFYYAQKAVL  176 (507)
Q Consensus       150 --~~~~~~~SA~~g~--------gi~~l~~~i~~~i~  176 (507)
                        ..+++++||++|.        ++.++++.+.+.+.
T Consensus       165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence              1379999999983        56777777776554

>cd04131 Rnd Rnd subfamily

Probab=99.56  E-value=1.5e-14  Score=132.30  Aligned_cols=81  Identities=19%  Similarity=0.304  Sum_probs=73.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++.|...+.||.+..+. +.+.+++...++.+|||+|+++|..+.  +.++++||++++
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~--~~~~~~a~~~il   78 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVR--PLCYPDSDAVLI   78 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcc--hhhcCCCCEEEE
Confidence            69999999999999999999999999889898876664 567777788899999999999999887  679999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 vfdi   82 (178)
T cd04131          79 CFDI   82 (178)
T ss_pred             EEEC
Confidence            9995

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.56  E-value=4.3e-14  Score=141.49  Aligned_cols=89  Identities=18%  Similarity=0.139  Sum_probs=61.2

Q ss_pred             hhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548           74 GKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (507)
                      .+.+.++.++|.+++|+|+.++. +...+.. |+..+...  ++|+++|+||+||......    .........++.  .
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~~~--~ip~ILVlNK~DLv~~~~~----~~~~~~~~~~g~--~  151 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAEST--GLEIVLCLNKADLVSPTEQ----QQWQDRLQQWGY--Q  151 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHHHC--CCCEEEEEEchhcCChHHH----HHHHHHHHhcCC--e
Confidence            34456789999999999998775 4444454 66655444  7999999999999643111    111122223342  6


Q ss_pred             EEEeCcccCCCchHHHHHH
Q 010548          153 CVECSATTMIQVPDVFYYA  171 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~~~i  171 (507)
                      ++.+||+++.|++++++.+
T Consensus       152 v~~iSA~tg~GI~eL~~~L  170 (352)
T PRK12289        152 PLFISVETGIGLEALLEQL  170 (352)
T ss_pred             EEEEEcCCCCCHHHHhhhh
Confidence            8999999999998877654

>cd04133 Rop_like Rop subfamily

Probab=99.56  E-value=1.4e-14  Score=131.98  Aligned_cols=81  Identities=17%  Similarity=0.374  Sum_probs=72.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|+++||||||+.+|+++.|...+.+|.+..+ .+.+..++...++.||||+|+++|..++  ..++++||++++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il   78 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLR--PLSYRGADVFVL   78 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccc--hhhcCCCcEEEE
Confidence            6999999999999999999999999988999998666 4456677778899999999999999987  679999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 vyd~   82 (176)
T cd04133          79 AFSL   82 (176)
T ss_pred             EEEc
Confidence            9995

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.55  E-value=1.6e-14  Score=134.88  Aligned_cols=82  Identities=18%  Similarity=0.358  Sum_probs=75.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      +||+++|++|||||||+++|+++.+...+.+|.+.++..+.+..+ +....+.+|||+|++++..++  ..++++||+++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~a~~~i   78 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMT--RVYYRGAVGAI   78 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhH--HHHhCCCCEEE
Confidence            589999999999999999999999998899999988887777777 678899999999999999887  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 lv~D~   83 (201)
T cd04107          79 IVFDV   83 (201)
T ss_pred             EEEEC
Confidence            99995

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.55  E-value=4.5e-14  Score=145.18  Aligned_cols=164  Identities=13%  Similarity=0.161  Sum_probs=106.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCC---CC------CC----CCCCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVP---EK------VP----PVHAPTRLP---PDFYPDRVPVTIIDTSSSLE   71 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~---~~------~~----~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~   71 (507)
                      ..++.++|+++|++++|||||+++|++....   ..      ..    ....+.|+.   ..+..++..+.++||||+.+
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3466799999999999999999999862100   00      00    011223311   22334567899999999987


Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEE-EEEecccCCCCCCc-cchhhhhHHHHHHhcc
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE  149 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~  149 (507)
                      |.......+..+|++++|+|+.++...+.. + ++..+...  ++|.+ +++||+|+.+.... .....++..+...++.
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e-~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-E-HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhHH-H-HHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            777677778899999999999876433322 2 44555555  68865 57999999743221 0122244455555442


Q ss_pred             ---cCcEEEeCcccCC----------CchHHHHHHHHHH
Q 010548          150 ---IETCVECSATTMI----------QVPDVFYYAQKAV  175 (507)
Q Consensus       150 ---~~~~~~~SA~~g~----------gi~~l~~~i~~~i  175 (507)
                         ..+++++||++|.          ++.+|++.|...+
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence               1378999999995          4566666665543

>cd04122 Rab14 Rab14 subfamily

Probab=99.55  E-value=2e-14  Score=129.87  Aligned_cols=83  Identities=23%  Similarity=0.465  Sum_probs=75.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++++...+.++.+.++..+.+...+...++.+|||+|++++..++  ..+++++|+++
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~i   79 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT--RSYYRGAAGAL   79 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEEE
Confidence            4899999999999999999999999988888888888877777777777889999999999999887  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 lv~d~   84 (166)
T cd04122          80 MVYDI   84 (166)
T ss_pred             EEEEC
Confidence            99995

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.55  E-value=2e-14  Score=130.08  Aligned_cols=84  Identities=27%  Similarity=0.431  Sum_probs=76.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|.+.++...+.++.+.++..+.+..++...++.+|||+|++++..+.  ..++++||++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~--~~~~~~ad~~   79 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT--TAYYRGAMGI   79 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhCCCCEE
Confidence            45899999999999999999999999999999999988877788888777899999999999998877  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~d~   85 (167)
T cd01867          80 ILVYDI   85 (167)
T ss_pred             EEEEEC
Confidence            999995

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.55  E-value=2e-14  Score=151.68  Aligned_cols=132  Identities=13%  Similarity=0.097  Sum_probs=91.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------------------CCeee---CCcccCCceEEEEEeCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-------------------APTRL---PPDFYPDRVPVTIIDTS   67 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-------------------~~~t~---~~~~~~~~~~~~i~Dt~   67 (507)
                      .+..+|+|+|++++|||||+++|+...-.....+..                   .+.++   ...+.++++.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            356799999999999999999997422111111000                   01111   12244678899999999


Q ss_pred             CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh
Q 010548           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (507)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  147 (507)
                      |+.++......+++.+|++|+|+|++++.....  ..++...+..  ++|+++++||+|+....    ..+.+..+...+
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~a~----~~~~l~~i~~~l  159 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDGRE----PLELLDEIEEVL  159 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccccC----HHHHHHHHHHHh
Confidence            998888878889999999999999988643322  2355555555  79999999999987642    223445555656


Q ss_pred             cc
Q 010548          148 RE  149 (507)
Q Consensus       148 ~~  149 (507)
                      +.
T Consensus       160 ~~  161 (526)
T PRK00741        160 GI  161 (526)
T ss_pred             CC
Confidence            54

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.55  E-value=2e-14  Score=136.21  Aligned_cols=82  Identities=17%  Similarity=0.290  Sum_probs=74.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||++||++|||||||+++|+++.|...|.||.+..+. ..+.+++..+++.||||+|+++|..+.  ..+|++||+++
T Consensus        13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~--~~~~~~ad~vI   89 (232)
T cd04174          13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSDAVL   89 (232)
T ss_pred             eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHH--HHHcCCCcEEE
Confidence            589999999999999999999999999999999887764 456777788899999999999999887  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        90 lVyDi   94 (232)
T cd04174          90 LCFDI   94 (232)
T ss_pred             EEEEC
Confidence            99996

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.55  E-value=1.1e-13  Score=132.38  Aligned_cols=160  Identities=21%  Similarity=0.239  Sum_probs=109.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCcc----chhhhH----Hhh
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE----NKGKLN----EEL   80 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~----~~~   80 (507)
                      .....|+|.|.||||||||++++++.+...+ ||-+.-+.. -..+..+..+++++||||.-+    ..+.++    .++
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~-vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIH-VGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccccee-EeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            3467899999999999999999999884322 443222221 234445677999999999742    111111    233


Q ss_pred             -ccCCEEEEEEeCCC--hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           81 -KRADAVVLTYACNQ--QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        81 -~~ad~il~V~D~~~--~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                       .-+++|+|+||++.  +.+.+.... ++..++.... .|+++|.||+|.......    +........-+. .....+|
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~-~p~v~V~nK~D~~~~e~~----~~~~~~~~~~~~-~~~~~~~  317 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFK-APIVVVINKIDIADEEKL----EEIEASVLEEGG-EEPLKIS  317 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcC-CCeEEEEecccccchhHH----HHHHHHHHhhcc-cccccee
Confidence             34689999999975  467777665 7888887764 899999999998865333    222222222222 1467899


Q ss_pred             cccCCCchHHHHHHHHHHcC
Q 010548          158 ATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~  177 (507)
                      +..+.+++.+.+.+...+..
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhc
Confidence            99999999998888776543

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.54  E-value=2.4e-14  Score=129.98  Aligned_cols=81  Identities=22%  Similarity=0.373  Sum_probs=74.7

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|++|||||||+++|+++.|...|.+|.+..+..+.+...|...++.+|||+|+++|..++  ..+++++|++++|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv   79 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIA--STYYRGAQAIIIV   79 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhH--HHHhcCCCEEEEE
Confidence            79999999999999999999999999999999988877777788778899999999999999887  7899999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        80 ~d~   82 (170)
T cd04108          80 FDL   82 (170)
T ss_pred             EEC
Confidence            996

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.54  E-value=1.3e-13  Score=129.86  Aligned_cols=111  Identities=11%  Similarity=0.156  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCC-----------CCCCeee-----CCccc--------CCceEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEK--VPP-----------VHAPTRL-----PPDFY--------PDRVPVTIIDTS   67 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~-----------~~~~~t~-----~~~~~--------~~~~~~~i~Dt~   67 (507)
                      +|+|+|+.++|||||+.+|+.......  ...           ...+.|+     ...+.        ..++.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            699999999999999999986432111  000           0001111     11122        237889999999


Q ss_pred             CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~  128 (507)
                      |+.+|......+++.+|++++|+|++++.+.+...  ++......  ++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~~--~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALKE--RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCcc
Confidence            99999999999999999999999999987666533  44444444  68999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01875 RhoG RhoG subfamily

Probab=99.54  E-value=2.3e-14  Score=132.75  Aligned_cols=82  Identities=18%  Similarity=0.372  Sum_probs=73.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+.+.|...+.||.+..+. +.+.++++.+.+.+|||+|+++|..++  ..++++||+++
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~--~~~~~~a~~~i   79 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLR--TLSYPQTNVFI   79 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhccCCCEEE
Confidence            489999999999999999999999999899999886554 445667778899999999999999988  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 lvydi   84 (191)
T cd01875          80 ICFSI   84 (191)
T ss_pred             EEEEC
Confidence            99996

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01865 Rab3 Rab3 subfamily

Probab=99.54  E-value=3e-14  Score=128.60  Aligned_cols=82  Identities=22%  Similarity=0.368  Sum_probs=74.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.++.+.++....+..+++...+.+|||+|++++..++  ..+++++|++++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~--~~~~~~~~~~l~   79 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT--TAYYRGAMGFIL   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHccCCcEEEE
Confidence            799999999999999999999999988888998888877777777667889999999999999887  688999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        80 v~d~   83 (165)
T cd01865          80 MYDI   83 (165)
T ss_pred             EEEC
Confidence            9995

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>CHL00071 tufA elongation factor Tu

Probab=99.53  E-value=1e-13  Score=143.18  Aligned_cols=152  Identities=14%  Similarity=0.144  Sum_probs=101.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-------------CCCCCCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------------VPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-------------~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~   72 (507)
                      ..+.++|+++|++++|||||+++|++......             ......++|+.   ..+..++..+.++||||+..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            45679999999999999999999997421100             00011333322   223356778999999998887


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-  149 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-  149 (507)
                      .......+..+|++++|+|+..+...+...  .+..+...  ++| +|+++||+|+.+.... ......+..+....+. 
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~--~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQTKE--HILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            777778889999999999998764433322  55556655  678 7789999999753221 0122234444444432 


Q ss_pred             --cCcEEEeCcccCCCc
Q 010548          150 --IETCVECSATTMIQV  164 (507)
Q Consensus       150 --~~~~~~~SA~~g~gi  164 (507)
                        ..+++++||.+|.|+
T Consensus       165 ~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        165 GDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCcceEEEcchhhcccc
Confidence              137999999999754

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.53  E-value=6.3e-16  Score=134.70  Aligned_cols=160  Identities=18%  Similarity=0.205  Sum_probs=127.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc-----C---CceEEEEEeCCCCccchhhhHHhhccC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-----P---DRVPVTIIDTSSSLENKGKLNEELKRA   83 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~-----~---~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (507)
                      -+|+.|+|..+|||||++.+++...|...+..     |+..++.     +   .-+++.+||..|++++..+..-+++++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRA-----tIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea   99 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA-----TIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA   99 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHH-----HHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence            58999999999999999999998887655544     2222221     2   246789999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHhHHHHHHhc-----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           84 DAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      ++..+|||+++..+|+.... |...+...     +...|+++..||||....... .....+..+.++.+. ..++++|+
T Consensus       100 ~~~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~kengf-~gwtets~  176 (229)
T KOG4423|consen  100 HGAFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENGF-EGWTETSA  176 (229)
T ss_pred             cceEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccCc-cceeeecc
Confidence            99999999999999999886 98887543     234789999999998765433 233556666666664 37899999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC
Q 010548          159 TTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      |.+.++.|..+.+++.++-..
T Consensus       177 Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  177 KENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             ccccChhHHHHHHHHHHHhhc
Confidence            999999999999998876444

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.53  E-value=4.3e-14  Score=127.63  Aligned_cols=83  Identities=28%  Similarity=0.476  Sum_probs=75.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++++++++...+.++.+.++..+.+...+...++.+|||+|++++..++  ..+++.+|+++
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~ii   79 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHGII   79 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhCcCCEEE
Confidence            4899999999999999999999999988888888888887878777777889999999999998887  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 ~v~d~   84 (166)
T cd01869          80 IVYDV   84 (166)
T ss_pred             EEEEC
Confidence            99995

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.53  E-value=8e-14  Score=143.44  Aligned_cols=150  Identities=15%  Similarity=0.165  Sum_probs=97.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCC------CC-C------CCCCCCCeee---CCcccCCceEEEEEeCCCCccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV------PE-K------VPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~------~~-~------~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~   72 (507)
                      ..+.++|+++|+.++|||||+++|++...      .. .      ......+.|+   ...+..++..+.+|||||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            46679999999999999999999984310      00 0      0001122231   1233355678999999999888


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEE-EEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-  149 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-  149 (507)
                      .......+..+|++++|+|++.+...+...  .+..+...  ++|.+ +|+||+|+.+.... ....+++..+...++. 
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e--~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            766666778899999999998854333322  44445555  67755 68999998753221 0112344555555542 


Q ss_pred             --cCcEEEeCcccCC
Q 010548          150 --IETCVECSATTMI  162 (507)
Q Consensus       150 --~~~~~~~SA~~g~  162 (507)
                        ..+++++||++|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence              1479999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.53  E-value=1.8e-13  Score=134.92  Aligned_cols=155  Identities=21%  Similarity=0.156  Sum_probs=111.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh--hhH------Hhh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG--KLN------EEL   80 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~------~~~   80 (507)
                      .-..|+++|-.|+|||||+|+|++......  ...+..++|....+.. +..+.+.||.|....-.  +..      ...
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            456899999999999999999997664322  4445555555444433 67899999999754322  111      346


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ..||+++.|+|++++...+.+.. ..+.+...+ .++|+|+|.||+|+..+...      ...+....+   ..+.+||+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~------~~~~~~~~~---~~v~iSA~  339 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEI------LAELERGSP---NPVFISAK  339 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhh------hhhhhhcCC---CeEEEEec
Confidence            78999999999999977776665 566666653 36999999999997654221      112222221   47999999


Q ss_pred             cCCCchHHHHHHHHHHc
Q 010548          160 TMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~  176 (507)
                      +|.|++.|.+.|...+.
T Consensus       340 ~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         340 TGEGLDLLRERIIELLS  356 (411)
T ss_pred             cCcCHHHHHHHHHHHhh
Confidence            99999999999988774

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.52  E-value=4.6e-14  Score=131.21  Aligned_cols=82  Identities=20%  Similarity=0.104  Sum_probs=73.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-----CCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-----GGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      +||+++|+++||||||+++|+++.+...+.+|.+.++..+.+.++     +....+.||||+|+++|..++  ..+|+++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~--~~~yr~a   78 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR--AVFYNQV   78 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH--HHHhCcC
Confidence            589999999999999999999999998888999887777776664     356789999999999999887  7899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++|+|||+
T Consensus        79 d~iIlVyDv   87 (202)
T cd04102          79 NGIILVHDL   87 (202)
T ss_pred             CEEEEEEEC
Confidence            999999995

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.52  E-value=5e-14  Score=126.98  Aligned_cols=82  Identities=21%  Similarity=0.361  Sum_probs=75.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.++.+.++..+.+...+....+.+|||+|++++..++  ..+++++|++++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il   78 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR--NEFYKDTQGVLL   78 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH--HHHhccCCEEEE
Confidence            589999999999999999999999998888999988877778888788899999999999998877  688999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~D~   82 (168)
T cd04119          79 VYDV   82 (168)
T ss_pred             EEEC
Confidence            9995

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04116 Rab9 Rab9 subfamily

Probab=99.52  E-value=6.4e-14  Score=127.04  Aligned_cols=84  Identities=17%  Similarity=0.329  Sum_probs=75.9

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+.++..+.+..+++..++.+|||+|++++..++  ..+++.+|++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~   81 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLR--TPFYRGSDCC   81 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhH--HHHhcCCCEE
Confidence            46899999999999999999999999988888888887777777888788899999999999999887  6799999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        82 i~v~d~   87 (170)
T cd04116          82 LLTFAV   87 (170)
T ss_pred             EEEEEC
Confidence            999985

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>TIGR00503 prfC peptide chain release factor 3

Probab=99.52  E-value=1.1e-13  Score=146.03  Aligned_cols=117  Identities=12%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-------------------CCeee---CCcccCCceEEEEEeCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-------------------APTRL---PPDFYPDRVPVTIIDTS   67 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-------------------~~~t~---~~~~~~~~~~~~i~Dt~   67 (507)
                      .+..+|+|+|++++|||||+++|+...-.....+..                   .+.++   ...+.++++.+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            456799999999999999999996422111111000                   01111   12344678999999999


Q ss_pred             CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      |+..+......+++.+|++|+|+|++++..  .....++...+..  ++|+++++||+|+...
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~~--~~PiivviNKiD~~~~  147 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTRLR--DTPIFTFMNKLDRDIR  147 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHhc--CCCEEEEEECccccCC
Confidence            998888777889999999999999987632  2222355555554  7999999999998653

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01868 Rab11_like Rab11-like

Probab=99.52  E-value=6.1e-14  Score=126.47  Aligned_cols=84  Identities=25%  Similarity=0.388  Sum_probs=76.0

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++++++++...+.++.+.++....+..++...++.+|||+|++++..+.  ..++++|+++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~   79 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT--SAYYRGAVGA   79 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHCCCCEE
Confidence            35899999999999999999999999998888999988888888888667789999999999999887  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~d~   85 (165)
T cd01868          80 LLVYDI   85 (165)
T ss_pred             EEEEEC
Confidence            999995

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.52  E-value=1.4e-13  Score=120.85  Aligned_cols=54  Identities=17%  Similarity=0.086  Sum_probs=42.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~  482 (507)
                      +++++|.+|||||||+|++++.++...+..++.++. ...+.+.+   .+.+|||+|.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH-FQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc-eEEEEeCC---CEEEEECCCc
Confidence            789999999999999999999988766666665554 44555542   4688999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04136 Rap_like Rap-like subfamily

Probab=99.52  E-value=4.4e-14  Score=126.95  Aligned_cols=81  Identities=22%  Similarity=0.337  Sum_probs=70.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++.+...+.+|.+. ...+.+..++....+.+|||+|+++|..++  ..+++++|++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il   78 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMR--DLYIKNGQGFVL   78 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHH--HHHhhcCCEEEE
Confidence            79999999999999999999999998888887763 345566777677788999999999999888  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (163)
T cd04136          79 VYSI   82 (163)
T ss_pred             EEEC
Confidence            9995

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.51  E-value=5.6e-14  Score=128.24  Aligned_cols=81  Identities=23%  Similarity=0.413  Sum_probs=71.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|++++|...+.||.+..+.. .+..++...++.+|||+|+++|..++  ..+++.+|++++
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~a~~~il   78 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLR--PLSYPQTDVFLV   78 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhhh--hhhcccCCEEEE
Confidence            799999999999999999999999988888988866643 45666677889999999999998877  679999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (175)
T cd01874          79 CFSV   82 (175)
T ss_pred             EEEC
Confidence            9995

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04124 RabL2 RabL2 subfamily

Probab=99.51  E-value=6.7e-14  Score=125.88  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|.+|||||||+++|+++++...+.++.+.......+..++....+.+|||+|+++|..++  ..+++++|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~   78 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH--ASYYHKAHACIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhCCCCEEEE
Confidence            589999999999999999999999988777776666655566667677789999999999999888  689999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (161)
T cd04124          79 VFDV   82 (161)
T ss_pred             EEEC
Confidence            9995

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04110 Rab35 Rab35 subfamily

Probab=99.51  E-value=7.4e-14  Score=130.21  Aligned_cols=84  Identities=29%  Similarity=0.462  Sum_probs=76.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|++..+...+.+|.+.++....+.+++....+.+|||+|++++..++  ..++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~a~~i   82 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT--STYYRGTHGV   82 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH--HHHhCCCcEE
Confidence            46999999999999999999999999988888999888887888887777789999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        83 ilv~D~   88 (199)
T cd04110          83 IVVYDV   88 (199)
T ss_pred             EEEEEC
Confidence            999996

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01866 Rab2 Rab2 subfamily

Probab=99.51  E-value=8.2e-14  Score=126.18  Aligned_cols=84  Identities=23%  Similarity=0.399  Sum_probs=75.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++++++.++...+.++.+.++....+...++...+.+|||+|++++..+.  ..+++.+|++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i   80 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT--RSYYRGAAGA   80 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEE
Confidence            45899999999999999999999999988888888888877777777777789999999999998877  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        81 l~v~d~   86 (168)
T cd01866          81 LLVYDI   86 (168)
T ss_pred             EEEEEC
Confidence            999995

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.51  E-value=8.2e-14  Score=131.79  Aligned_cols=85  Identities=16%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+.+++...+.+|.+..+....+..+++..++.+|||+|+++|..++  ..+++++|+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~   88 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--DGYYIHGQC   88 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHcccccE
Confidence            456999999999999999999999999998899999887776667677677899999999999999887  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +|+|||+
T Consensus        89 ~ilvfD~   95 (219)
T PLN03071         89 AIIMFDV   95 (219)
T ss_pred             EEEEEeC
Confidence            9999995

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.51  E-value=6.9e-14  Score=131.90  Aligned_cols=81  Identities=19%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||++||++|||||||+++|+++.|...|.||.+..+. ..+.+++....+.+|||+|++.|..++  +.+|+++|++++
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~--~~~~~~~d~ill   78 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR--PLAYPDSDAVLI   78 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh--HHhccCCCEEEE
Confidence            69999999999999999999999999999999887665 456677778899999999999999887  689999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 vfdi   82 (222)
T cd04173          79 CFDI   82 (222)
T ss_pred             EEEC
Confidence            9996

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04127 Rab27A Rab27a subfamily

Probab=99.51  E-value=9.5e-14  Score=127.13  Aligned_cols=84  Identities=14%  Similarity=0.300  Sum_probs=73.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC----------CCeEEEEEEecCCchhhhhhccc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP----------GGNKKTLILQEIPEEGVKKILSN  491 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~  491 (507)
                      +.+||+++|++|||||||+++|.++.+...+.+|.+.++..+.+...          +...++.+|||+|++++..++  
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--   80 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT--   80 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH--
Confidence            56899999999999999999999999999888998877766655543          356789999999999999887  


Q ss_pred             hhhcccccEEEEEEeC
Q 010548          492 KEALASCDVTIFVYDR  507 (507)
Q Consensus       492 ~~~~~~ad~vilv~D~  507 (507)
                      ..+++++|++++|||+
T Consensus        81 ~~~~~~~~~~i~v~d~   96 (180)
T cd04127          81 TAFFRDAMGFLLIFDL   96 (180)
T ss_pred             HHHhCCCCEEEEEEEC
Confidence            6899999999999995

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN00023 GTP-binding protein; Provisional

Probab=99.50  E-value=8.7e-14  Score=135.72  Aligned_cols=87  Identities=18%  Similarity=0.138  Sum_probs=76.5

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-------------CeEEEEEEecCCchhh
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------GNKKTLILQEIPEEGV  485 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~~i~Dt~G~~~~  485 (507)
                      .....+||+++|+.|||||||+++|+++.+...+.+|++..+.++.+.+.+             ..+.+.||||+|+++|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            344569999999999999999999999999988899999888777776542             3567899999999999


Q ss_pred             hhhccchhhcccccEEEEEEeC
Q 010548          486 KKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       486 ~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..++  ..+|++++++|+|||+
T Consensus        97 rsL~--~~yyr~AdgiILVyDI  116 (334)
T PLN00023         97 KDCR--SLFYSQINGVIFVHDL  116 (334)
T ss_pred             hhhh--HHhccCCCEEEEEEeC
Confidence            9988  7899999999999996

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.50  E-value=7.4e-13  Score=131.08  Aligned_cols=80  Identities=28%  Similarity=0.346  Sum_probs=53.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC--CCee---eCC-----------------ccc-CCceEEEEEeCCCC-
Q 010548           15 VVVVGDRGTGKSSLIAAAATESVPEK-VPPVH--APTR---LPP-----------------DFY-PDRVPVTIIDTSSS-   69 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~--~~~t---~~~-----------------~~~-~~~~~~~i~Dt~G~-   69 (507)
                      |+++|.||||||||+|+|++.....+ ++...  +..-   ...                 ..+ ...+.+++|||||+ 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            58999999999999999998774221 22211  1110   000                 011 13478999999998 


Q ss_pred             ---ccchhhhH---HhhccCCEEEEEEeCCC
Q 010548           70 ---LENKGKLN---EELKRADAVVLTYACNQ   94 (507)
Q Consensus        70 ---~~~~~~~~---~~~~~ad~il~V~D~~~   94 (507)
                         .++..+..   ..++.||++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               33444433   35899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04109 Rab28 Rab28 subfamily

Probab=99.50  E-value=8e-14  Score=131.64  Aligned_cols=82  Identities=23%  Similarity=0.368  Sum_probs=74.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-CeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      +||+++|++|||||||+++|+++.+...+.+|.+.++..+.+.+++ ...++.+|||+|++.+..++  ..++++||+++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~ad~ii   78 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKML--DKYIYGAHAVF   78 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHH--HHHhhcCCEEE
Confidence            5899999999999999999999999999999999888887787764 46789999999999999887  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 lV~D~   83 (215)
T cd04109          79 LVYDV   83 (215)
T ss_pred             EEEEC
Confidence            99995

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01864 Rab19 Rab19 subfamily

Probab=99.50  E-value=1.1e-13  Score=124.97  Aligned_cols=84  Identities=25%  Similarity=0.423  Sum_probs=75.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++++.++.+...+.++.+.++..+.+..++....+.+|||+|++++....  ..+++.+|++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~~   79 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT--QSYYRSANGA   79 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEE
Confidence            45899999999999999999999999988888888888877888887666789999999999998877  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 llv~d~   85 (165)
T cd01864          80 IIAYDI   85 (165)
T ss_pred             EEEEEC
Confidence            999995

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03110 Rab GTPase; Provisional

Probab=99.50  E-value=1.1e-13  Score=130.81  Aligned_cols=85  Identities=24%  Similarity=0.372  Sum_probs=77.8

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|++..+...+.+|.+.++..+.+...+...++.+|||+|++++.+++  ..+++.+++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~~~   87 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--SAYYRGAVG   87 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhCCCCE
Confidence            457999999999999999999999999988888999988888888888777899999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        88 ~ilv~d~   94 (216)
T PLN03110         88 ALLVYDI   94 (216)
T ss_pred             EEEEEEC
Confidence            9999995

>cd04117 Rab15 Rab15 subfamily

Probab=99.50  E-value=9.3e-14  Score=124.96  Aligned_cols=82  Identities=26%  Similarity=0.416  Sum_probs=74.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.++.+.++..+.+..++...++.+|||+|++++..+.  ..+++.+|++++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~i~   78 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT--KQYYRRAQGIFL   78 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH--HHHhcCCcEEEE
Confidence            589999999999999999999999988888888888777778887667889999999999999887  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (161)
T cd04117          79 VYDI   82 (161)
T ss_pred             EEEC
Confidence            9995

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK12288 GTPase RsgA; Reviewed

Probab=99.50  E-value=3.5e-13  Score=135.00  Aligned_cols=86  Identities=15%  Similarity=0.128  Sum_probs=61.5

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ..++|.+++|+++....++..+.. |+..+...  ++|+++|+||+|+...... .............+  .+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~~~--~i~~VIVlNK~DL~~~~~~-~~~~~~~~~y~~~g--~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDR-YLVACETL--GIEPLIVLNKIDLLDDEGR-AFVNEQLDIYRNIG--YRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHH-HHHHHHhc--CCCEEEEEECccCCCcHHH-HHHHHHHHHHHhCC--CeEEEEeCC
Confidence            356899999999988888988876 77666554  7999999999999754211 01111112222333  278999999


Q ss_pred             cCCCchHHHHHH
Q 010548          160 TMIQVPDVFYYA  171 (507)
Q Consensus       160 ~g~gi~~l~~~i  171 (507)
                      ++.|++++++.|
T Consensus       192 tg~GideL~~~L  203 (347)
T PRK12288        192 TGEGLEELEAAL  203 (347)
T ss_pred             CCcCHHHHHHHH
Confidence            999999988765

>cd04111 Rab39 Rab39 subfamily

Probab=99.50  E-value=1.1e-13  Score=130.30  Aligned_cols=83  Identities=25%  Similarity=0.415  Sum_probs=74.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      .+||+++|++|||||||+++|+++++...+.+|.+.++..+.+.+. +...++.+|||+|++++..+.  ..+++++|++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~i   79 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT--RSYYRNSVGV   79 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH--HHHhcCCcEE
Confidence            4899999999999999999999999999888999888887777664 456789999999999999877  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 ilv~D~   85 (211)
T cd04111          80 LLVFDI   85 (211)
T ss_pred             EEEEEC
Confidence            999995

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.49  E-value=1.1e-13  Score=125.90  Aligned_cols=82  Identities=17%  Similarity=0.281  Sum_probs=72.3

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++++...+.++.+..+ .+.+..++....+.+|||+|+++|..++  ..+++.+|+++
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~~i   78 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMR--DQYMRCGEGFI   78 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHh--HHHhhcCCEEE
Confidence            37999999999999999999999999888888888655 3446677677889999999999999988  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 lv~d~   83 (172)
T cd04141          79 ICYSV   83 (172)
T ss_pred             EEEEC
Confidence            99995

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.49  E-value=4.3e-13  Score=131.28  Aligned_cols=89  Identities=15%  Similarity=0.045  Sum_probs=59.2

Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (507)
                      ..+...++.||++++|+|+..+.+.....  +.+.+    .++|+|+|.||+|+.+...   .......+ ...+  .++
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l----~~kp~IiVlNK~DL~~~~~---~~~~~~~~-~~~~--~~v   80 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR----GNKPRLIVLNKADLADPAV---TKQWLKYF-EEKG--IKA   80 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH----CCCCEEEEEEccccCCHHH---HHHHHHHH-HHcC--CeE
Confidence            44567899999999999998875543321  33333    2689999999999854211   11111112 2222  257


Q ss_pred             EEeCcccCCCchHHHHHHHHH
Q 010548          154 VECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      +.+||+++.|++++.+.+.+.
T Consensus        81 i~iSa~~~~gi~~L~~~i~~~  101 (276)
T TIGR03596        81 LAINAKKGKGVKKIIKAAKKL  101 (276)
T ss_pred             EEEECCCcccHHHHHHHHHHH
Confidence            999999999999998877554

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04176 Rap2 Rap2 subgroup

Probab=99.49  E-value=1e-13  Score=124.68  Aligned_cols=81  Identities=22%  Similarity=0.340  Sum_probs=71.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++++.+.+...+.++.+ .+....+..++....+.+|||+|+++|..++  ..++++||++++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~i~   78 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFIV   78 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchH--HHHHhhCCEEEE
Confidence            7999999999999999999999999888877776 3445667777777789999999999999888  689999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (163)
T cd04176          79 VYSL   82 (163)
T ss_pred             EEEC
Confidence            9995

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.49  E-value=2.3e-13  Score=127.18  Aligned_cols=166  Identities=19%  Similarity=0.192  Sum_probs=113.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCcc-------chhhhHH
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE-------NKGKLNE   78 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~   78 (507)
                      .....++|.++|..|||||||||+|..+...+.  .....+..+ ..........+.+|||||.++       +......
T Consensus        35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~-~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT-RLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh-hHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence            345679999999999999999999997553222  111111112 111223346799999999875       4445667


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC--------Cc-----cchhhhhHHHHH
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH--------NA-----TSLEEVMGPIMQ  145 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~--------~~-----~~~~~~~~~~~~  145 (507)
                      ++.+.|+++.+.++.++.--.  ..+++..+...+-+.|+++++|.+|.....        ..     ...++....+.+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~--d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGT--DEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccC--CHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            889999999999999884332  333555555555579999999999976541        00     011222333444


Q ss_pred             HhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          146 QFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       146 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      .+....|++..|...+.|++++...+++.+.
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            4455558899999999999999999999875

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.49  E-value=1.2e-13  Score=123.63  Aligned_cols=81  Identities=21%  Similarity=0.334  Sum_probs=70.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.++.+..+ .+.+.+++....+.+|||+|++++..++  ..+++++|++++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~--~~~~~~~~~~i~   78 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFLC   78 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHH--HHHHhcCCEEEE
Confidence            6999999999999999999999999888888877655 4556667667788899999999999888  689999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~~~   82 (162)
T cd04138          79 VFAI   82 (162)
T ss_pred             EEEC
Confidence            9985

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.48  E-value=1.4e-13  Score=123.55  Aligned_cols=82  Identities=18%  Similarity=0.386  Sum_probs=73.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC--CCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP--GGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +||+++|++|||||||+++|+++.+...+.++.+.++..+.+...  +...++.+|||+|++++..++  ..+++.+|++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~   78 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH--HHHhcCCCEE
Confidence            589999999999999999999999988888888888766666666  677899999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        79 v~v~d~   84 (162)
T cd04106          79 ILVFST   84 (162)
T ss_pred             EEEEEC
Confidence            999995

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.48  E-value=2.2e-13  Score=115.40  Aligned_cols=104  Identities=24%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh---------hhHHhhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG---------KLNEELK   81 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~   81 (507)
                      +|+|+|.+|||||||+|+|++.+.  ......+..|..   ..+...+..+.++||||......         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~--~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKL--AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTS--SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhcccc--ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998652  222222233322   22234567788999999854211         1224458


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEec
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK  124 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK  124 (507)
                      .+|++++|+|++++.. +... .++..++ .  ++|+++|.||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~-~~~~~l~-~--~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDK-NILRELK-N--KKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHH-HHHHHHH-T--TSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHH-HHHHHHh-c--CCCEEEEEcC
Confidence            9999999999887433 2222 2666665 3  8999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN03127 Elongation factor Tu; Provisional

Probab=99.48  E-value=3.6e-13  Score=139.79  Aligned_cols=164  Identities=13%  Similarity=0.136  Sum_probs=103.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcC------CCCCCC-------CCCCCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATE------SVPEKV-------PPVHAPTRLP---PDFYPDRVPVTIIDTSSSLE   71 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~------~~~~~~-------~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~   71 (507)
                      ..++.++|+++|+.++|||||+++|.+.      .....+       .....++|+.   ..+..++.++.++||||+..
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            3456799999999999999999999732      100000       0011233322   23445667899999999988


Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCcc-chhhhhHHHHHHhcc
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE  149 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~  149 (507)
                      +.......+..+|++++|+|++++...+..  ..+..+...  ++| +|+++||+|+.+..... ....++..+...++.
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            877666777889999999999876443332  255556666  688 57899999997532210 011122233332221


Q ss_pred             ---cCcEEEeCcc---cCCC-------chHHHHHHHHHH
Q 010548          150 ---IETCVECSAT---TMIQ-------VPDVFYYAQKAV  175 (507)
Q Consensus       150 ---~~~~~~~SA~---~g~g-------i~~l~~~i~~~i  175 (507)
                         ..+++++||.   +|.|       +.+|++.+.+.+
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence               2378888886   4555       566777666554

>PRK00049 elongation factor Tu; Reviewed

Probab=99.48  E-value=4.4e-13  Score=137.78  Aligned_cols=163  Identities=13%  Similarity=0.166  Sum_probs=105.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCC---CC----------CCCCCCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP---EK----------VPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~---~~----------~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~   72 (507)
                      ..+.++|+++|+.++|||||+++|++....   ..          ......+.|+.   ..+..++..+.++||||+.++
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356799999999999999999999873110   00          00012233322   223345678999999999877


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEE-EEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII-VAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-  149 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-  149 (507)
                      .......+..+|++++|+|+..+.......  ++..+...  ++|++ +++||+|+.+.... .....++..+...++. 
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~--~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchHHHH--HHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            777777889999999999998764433322  55666665  68976 58999999753221 0112233334333332 


Q ss_pred             --cCcEEEeCcccCC----------CchHHHHHHHHHH
Q 010548          150 --IETCVECSATTMI----------QVPDVFYYAQKAV  175 (507)
Q Consensus       150 --~~~~~~~SA~~g~----------gi~~l~~~i~~~i  175 (507)
                        ..+++++||++|.          |+..+++.|...+
T Consensus       165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence              2378999999975          4556666665543

>cd01856 YlqF YlqF

Probab=99.48  E-value=5.2e-13  Score=121.35  Aligned_cols=90  Identities=18%  Similarity=0.083  Sum_probs=58.6

Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (507)
                      .......+++||++++|+|++++.......  +...+    .++|+++|.||+|+.....   .....+.+ ...+  ..
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~--i~~~~----~~k~~ilVlNK~Dl~~~~~---~~~~~~~~-~~~~--~~   77 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPL--LEKIL----GNKPRIIVLNKADLADPKK---TKKWLKYF-ESKG--EK   77 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCChh--hHhHh----cCCCEEEEEehhhcCChHH---HHHHHHHH-HhcC--Ce
Confidence            345567889999999999998765432211  32222    2579999999999964211   11111111 1111  25


Q ss_pred             EEEeCcccCCCchHHHHHHHHH
Q 010548          153 CVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      ++.+||+++.|++++.+.+...
T Consensus        78 vi~iSa~~~~gi~~L~~~l~~~   99 (171)
T cd01856          78 VLFVNAKSGKGVKKLLKAAKKL   99 (171)
T ss_pred             EEEEECCCcccHHHHHHHHHHH
Confidence            7999999999999998887654

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.48  E-value=1.8e-14  Score=122.10  Aligned_cols=85  Identities=18%  Similarity=0.240  Sum_probs=78.2

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...||++++|...||||||+-||+.++|.-..-.|....|..+.+.+.+....+.|||||||++|..+-  +.|||++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALG--PIYYRgSnG   88 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALG--PIYYRGSNG   88 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccC--ceEEeCCCc
Confidence            356999999999999999999999999998888888888888888888888899999999999999988  799999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      ++||||+
T Consensus        89 alLVyDI   95 (218)
T KOG0088|consen   89 ALLVYDI   95 (218)
T ss_pred             eEEEEec
Confidence            9999996

>PTZ00369 Ras-like protein; Provisional

Probab=99.48  E-value=1.5e-13  Score=127.08  Aligned_cols=83  Identities=20%  Similarity=0.294  Sum_probs=73.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++++...+.+|.+..+ .+.+.++++...+.+|||+|+++|..++  ..+++.+|++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~~d~i   80 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMR--DQYMRTGQGF   80 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhH--HHHhhcCCEE
Confidence            358999999999999999999999999888888887666 4556677777889999999999999888  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        81 ilv~D~   86 (189)
T PTZ00369         81 LCVYSI   86 (189)
T ss_pred             EEEEEC
Confidence            999995

>cd04125 RabA_like RabA-like subfamily

Probab=99.48  E-value=1.6e-13  Score=126.68  Aligned_cols=82  Identities=26%  Similarity=0.370  Sum_probs=74.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++.+...+.+|.+.++..+.+..+++...+.+|||+|++++..++  ..+++++|++++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--~~~~~~~d~iil   78 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN--NSYYRGAHGYLL   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH--HHHccCCCEEEE
Confidence            589999999999999999999999988888898888877778887777889999999999998877  789999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (188)
T cd04125          79 VYDV   82 (188)
T ss_pred             EEEC
Confidence            9995

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.48  E-value=4.6e-13  Score=140.27  Aligned_cols=155  Identities=16%  Similarity=0.073  Sum_probs=98.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCCC------------------CCeeeCC---ccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPVH------------------APTRLPP---DFY   55 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~------------~~~~------------------~~~t~~~---~~~   55 (507)
                      .+..++|+++|++++|||||+++|+...-....            ....                  .+.|+..   .+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            466799999999999999999999865421110            0000                  1111111   133


Q ss_pred             CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc
Q 010548           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS  135 (507)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~  135 (507)
                      .++..+.++||||++.+.......+..+|++++|+|++.+.......  ....+.... ..|+|+|+||+|+.+.... .
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~--~~~l~~~lg-~~~iIvvvNKiD~~~~~~~-~  179 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR--HSFIATLLG-IKHLVVAVNKMDLVDYSEE-V  179 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH--HHHHHHHhC-CCceEEEEEeeccccchhH-H
Confidence            55778999999998887666666789999999999998764322211  122233332 2578999999999753221 1


Q ss_pred             hhh---hhHHHHHHhc--ccCcEEEeCcccCCCchHH
Q 010548          136 LEE---VMGPIMQQFR--EIETCVECSATTMIQVPDV  167 (507)
Q Consensus       136 ~~~---~~~~~~~~~~--~~~~~~~~SA~~g~gi~~l  167 (507)
                      ..+   .+..+...++  ...+++++||++|.|+.++
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222   2222233332  1237899999999999864

>PRK09866 hypothetical protein; Provisional

Probab=99.48  E-value=5.3e-12  Score=131.44  Aligned_cols=174  Identities=14%  Similarity=0.097  Sum_probs=103.3

Q ss_pred             eEEEEEeCCCCccc-----hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548           59 VPVTIIDTSSSLEN-----KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~-----~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~  133 (507)
                      ..+.++||||....     ...+...+.++|+|+||+|++...+..+..  +.+.+++.+.+.|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~Dee--Ilk~Lkk~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEE--VREAILAVGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHH--HHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence            45679999998642     223446899999999999998865555532  67777776434699999999998643221


Q ss_pred             cchhhhhHHHHH-H----hcccCcEEEeCcccCCCchHHHHHHHHHHcCCCCCCCccchhcccHHHHHHHHHHHhhccCC
Q 010548          134 TSLEEVMGPIMQ-Q----FREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHD  208 (507)
Q Consensus       134 ~~~~~~~~~~~~-~----~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~  208 (507)
                        ..+.+..+.. .    ......++++||+.|.|++++++.|.+.-.-|.     ..    ..+..+.+...+-.-.-.
T Consensus       308 --dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~~-----~~----~~~wv~dfa~~~~gr~w~  376 (741)
T PRK09866        308 --DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLPP-----PE----QQRWVEDFAHAALGRRWR  376 (741)
T ss_pred             --hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCCc-----hh----hhHHHHHHHHHHhccccc
Confidence              1223333322 1    112336899999999999999999876421110     00    011222222222222211


Q ss_pred             CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhh
Q 010548          209 MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEK  245 (507)
Q Consensus       209 ~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~  245 (507)
                      ++..-..+.++....+.+.-.+-+.-++.+..++-+.
T Consensus       377 e~d~~d~e~l~~~A~~lwedS~~~~~i~~~i~~~~~~  413 (741)
T PRK09866        377 HADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYAN  413 (741)
T ss_pred             cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHh
Confidence            2222226677777777666655555555555554443

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.47  E-value=1.9e-13  Score=124.67  Aligned_cols=81  Identities=21%  Similarity=0.379  Sum_probs=70.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+.+|+++.+...+.++.+..+. ..+..++...++.+|||+|+++|..++  ..+++++|++|+
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il   78 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVFLI   78 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhhh--hhhcCCCCEEEE
Confidence            69999999999999999999999998888888765443 345666677889999999999999887  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (174)
T cd01871          79 CFSL   82 (174)
T ss_pred             EEEC
Confidence            9995

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.47  E-value=1.7e-13  Score=123.90  Aligned_cols=82  Identities=17%  Similarity=0.286  Sum_probs=72.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++++++.+...+.++.+.++....+...++...+.+|||+|++++..++  ..+++.+|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~   78 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR--DGYYIGGQCAII   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc--HHHhcCCCEEEE
Confidence            589999999999999999999999888888888877766666666677899999999999988776  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (166)
T cd00877          79 MFDV   82 (166)
T ss_pred             EEEC
Confidence            9995

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04118 Rab24 Rab24 subfamily

Probab=99.47  E-value=1.8e-13  Score=126.83  Aligned_cols=82  Identities=16%  Similarity=0.277  Sum_probs=72.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      +||+++|++|||||||+++|+++++.. .+.+|.+..+..+.+..++...++.+|||+|++++..+.  ..+++++|+++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~~d~ii   78 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS--RIYYRGAKAAI   78 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HhhcCCCCEEE
Confidence            489999999999999999999999874 577888877777778888777889999999999998877  67889999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 lv~d~   83 (193)
T cd04118          79 VCYDL   83 (193)
T ss_pred             EEEEC
Confidence            99995

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04175 Rap1 Rap1 subgroup

Probab=99.47  E-value=1.7e-13  Score=123.50  Aligned_cols=81  Identities=25%  Similarity=0.382  Sum_probs=71.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++++++.+...+.+|.+..+ .+.+...+....+.+|||+|++++..++  ..+++.+|++++
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~il   78 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFVL   78 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHH--HHHHhhCCEEEE
Confidence            6999999999999999999999998888888877655 3556677667788999999999999988  689999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (164)
T cd04175          79 VYSI   82 (164)
T ss_pred             EEEC
Confidence            9995

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.47  E-value=3.8e-13  Score=138.68  Aligned_cols=151  Identities=17%  Similarity=0.083  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCC------------CCC------------------CCCeee---CCcccCCce
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKV------------PPV------------------HAPTRL---PPDFYPDRV   59 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~------------~~~------------------~~~~t~---~~~~~~~~~   59 (507)
                      ++|+++|+.++|||||+++|+...-....            ...                  ..+.|+   ...+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999754321110            000                  011111   112235677


Q ss_pred             EEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch---
Q 010548           60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL---  136 (507)
Q Consensus        60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~---  136 (507)
                      ++.++||||++.|.......+..+|++++|+|+..+...+...  ....++... ..++|+|+||+|+...... ..   
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~~~-~~~iivviNK~D~~~~~~~-~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASLLG-IRHVVLAVNKMDLVDYDEE-VFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHHcC-CCcEEEEEEecccccchHH-HHHHH
Confidence            8999999999888777777899999999999998764333222  223333432 3468999999998753221 11   


Q ss_pred             hhhhHHHHHHhccc-CcEEEeCcccCCCchHH
Q 010548          137 EEVMGPIMQQFREI-ETCVECSATTMIQVPDV  167 (507)
Q Consensus       137 ~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l  167 (507)
                      .+....+...++.. .+++++||++|.|+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            12223333433321 26899999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01861 Rab6 Rab6 subfamily

Probab=99.47  E-value=2.3e-13  Score=122.02  Aligned_cols=82  Identities=17%  Similarity=0.400  Sum_probs=73.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++++++++...+.++.+.++..+.+..++...++.+|||+|++++....  ..+++++|++++
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--~~~~~~~~~ii~   78 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVV   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhccCCEEEE
Confidence            489999999999999999999999988888888888888888887666789999999999998877  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (161)
T cd01861          79 VYDI   82 (161)
T ss_pred             EEEC
Confidence            9995

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.46  E-value=2.9e-13  Score=147.43  Aligned_cols=155  Identities=14%  Similarity=0.068  Sum_probs=99.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC------------CCCC------------------CCCeeeC---Ccc
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------------VPPV------------------HAPTRLP---PDF   54 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~------------~~~~------------------~~~~t~~---~~~   54 (507)
                      ..+..++|+|+|++|+|||||+++|+...-...            ....                  ..+.|+.   ..+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            345678999999999999999999996542111            0000                  0111111   123


Q ss_pred             cCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc
Q 010548           55 YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT  134 (507)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~  134 (507)
                      ..++.++.++||||++.+.......+..+|++++|+|++.+...+...  ....+...+ .+|+|+|+||+|+.+.... 
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~~-~~~iivvvNK~D~~~~~~~-  175 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLLG-IRHVVLAVNKMDLVDYDQE-  175 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHhC-CCeEEEEEEecccccchhH-
Confidence            355678999999998877666667789999999999998764332221  233344332 3678999999999752211 


Q ss_pred             chh---hhhHHHHHHhccc-CcEEEeCcccCCCchH
Q 010548          135 SLE---EVMGPIMQQFREI-ETCVECSATTMIQVPD  166 (507)
Q Consensus       135 ~~~---~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~  166 (507)
                      ...   ..+..+...++.. .+++++||++|.|+.+
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111   2222333343321 2589999999999984

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.46  E-value=2.9e-13  Score=122.83  Aligned_cols=83  Identities=23%  Similarity=0.441  Sum_probs=73.6

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh-hhccchhhcccccEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCDVT  501 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~ad~v  501 (507)
                      .+||+++|++|||||||+++|+++.+...+.++.+.++..+.+...+....+.+|||+|++++. .+.  ..+++++|++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~d~~   79 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMV--QHYYRNVHAV   79 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhH--HHhhcCCCEE
Confidence            4799999999999999999999999988888888888877778888777899999999999887 455  5788999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~d~   85 (170)
T cd04115          80 VFVYDV   85 (170)
T ss_pred             EEEEEC
Confidence            999995

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.46  E-value=2.6e-13  Score=125.12  Aligned_cols=81  Identities=22%  Similarity=0.387  Sum_probs=69.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      +||+++|++|||||||+++|+++.+...+.++.+.++.. .+... +....+.+|||+|++++..++  ..++++||+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii   77 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLR--PLSYPDVDVLL   77 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHH--HHhCCCCCEEE
Confidence            489999999999999999999999988888887766644 34554 567789999999999999887  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        78 ~v~d~   82 (187)
T cd04132          78 ICYAV   82 (187)
T ss_pred             EEEEC
Confidence            99995

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.46  E-value=2.6e-13  Score=121.76  Aligned_cols=82  Identities=24%  Similarity=0.468  Sum_probs=73.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||++++++.++...+.++.+.++....+..++....+.+|||+|++++...+  ..+++++|++++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--~~~~~~~~~~i~   78 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT--RSYYRGAAGALL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH--HHHhcCCCEEEE
Confidence            589999999999999999999999988888888887777777777667789999999999998877  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (161)
T cd04113          79 VYDI   82 (161)
T ss_pred             EEEC
Confidence            9995

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.46  E-value=3e-13  Score=121.49  Aligned_cols=82  Identities=27%  Similarity=0.403  Sum_probs=74.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++++++++...+.++.+..+..+.+..++...++.+||++|++++...+  ..+++++|++++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~   79 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA--PMYYRGAAAAIV   79 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH--HHHhccCCEEEE
Confidence            799999999999999999999999988778888877777788888778899999999999988877  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        80 v~d~   83 (163)
T cd01860          80 VYDI   83 (163)
T ss_pred             EEEC
Confidence            9995

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.46  E-value=9.7e-13  Score=117.53  Aligned_cols=82  Identities=11%  Similarity=-0.008  Sum_probs=53.5

Q ss_pred             CEEEEEEeCCChhhHHHHHHhHH-HHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           84 DAVVLTYACNQQSTLSRLSSYWL-PELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        84 d~il~V~D~~~~~s~~~~~~~~~-~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      |++++|+|++++.+.....  +. ..+...  ++|+|+|+||+|+......   ......+....+  ..++.+||++|.
T Consensus         1 Dvvl~VvD~~~p~~~~~~~--i~~~~~~~~--~~p~IiVlNK~Dl~~~~~~---~~~~~~~~~~~~--~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRSPD--IERVLIKEK--GKKLILVLNKADLVPKEVL---RKWLAYLRHSYP--TIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccCHH--HHHHHHhcC--CCCEEEEEechhcCCHHHH---HHHHHHHHhhCC--ceEEEEeccCCc
Confidence            7899999999886554321  22 233333  7999999999999642111   111112222222  357999999999


Q ss_pred             CchHHHHHHHHH
Q 010548          163 QVPDVFYYAQKA  174 (507)
Q Consensus       163 gi~~l~~~i~~~  174 (507)
                      |++++.+.+.+.
T Consensus        72 gi~~L~~~i~~~   83 (155)
T cd01849          72 GIEKKESAFTKQ   83 (155)
T ss_pred             ChhhHHHHHHHH
Confidence            999999887553

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.46  E-value=7.4e-13  Score=127.22  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcc----cCCceEEEEEeCCCCccchh-------hhHHhhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDF----YPDRVPVTIIDTSSSLENKG-------KLNEELK   81 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~----~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~   81 (507)
                      -|.+||-||+|||||++.+...+-..+ |+    -+|+....    ......|.+-|.||..+-..       ..-.+++
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYp----FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE  236 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYP----FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE  236 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCc----cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence            477899999999999999998763222 32    23322111    14456799999999765332       2336789


Q ss_pred             cCCEEEEEEeCCChhh---HHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           82 RADAVVLTYACNQQST---LSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s---~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      ++-++++|+|++..+.   .++... +..++.++.   .++|.+||+||+|+....+.  .+.....+.+..+....++ 
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~~~~~~~~~~-  312 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAEALGWEVFYL-  312 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHHhcCCCccee-
Confidence            9999999999986543   555554 667777764   37999999999997654322  2333344444444432333 


Q ss_pred             eCcccCCCchHHHHHHHHHHcC
Q 010548          156 CSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      +||.++.|++++...+.+.+..
T Consensus       313 ISa~t~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         313 ISALTREGLDELLRALAELLEE  334 (369)
T ss_pred             eehhcccCHHHHHHHHHHHHHH
Confidence            9999999999999988877643

>PLN03126 Elongation factor Tu; Provisional

Probab=99.46  E-value=7.3e-13  Score=138.18  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=101.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCC------CCC-------CCCCCCeee---CCcccCCceEEEEEeCCCCccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVP------EKV-------PPVHAPTRL---PPDFYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~------~~~-------~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~   72 (507)
                      .++.++|+++|++++|||||+++|+.....      ..+       .....+.|+   ...+..++.++.++||||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            456789999999999999999999963210      000       001112221   1123456778999999999988


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-  149 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-  149 (507)
                      .......+..+|++++|+|+.++...+...  ++..+...  ++| +|+++||+|+.+.... ....+++..+...++. 
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e--~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            877778889999999999999875444322  55556665  678 7889999999753211 0122234444444321 


Q ss_pred             --cCcEEEeCcccCCCc
Q 010548          150 --IETCVECSATTMIQV  164 (507)
Q Consensus       150 --~~~~~~~SA~~g~gi  164 (507)
                        ..+++++||.+|.++
T Consensus       234 ~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        234 GDDIPIISGSALLALEA  250 (478)
T ss_pred             cCcceEEEEEccccccc
Confidence              237899999998654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.46  E-value=1e-12  Score=129.27  Aligned_cols=89  Identities=15%  Similarity=0.062  Sum_probs=58.6

Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (507)
                      ..+...++.||++|+|+|+..+.+.....  +...+    .++|+++|.||+|+.+...   .......+ ...+  .++
T Consensus        16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~--l~~~~----~~kp~iiVlNK~DL~~~~~---~~~~~~~~-~~~~--~~v   83 (287)
T PRK09563         16 REIKENLKLVDVVIEVLDARIPLSSENPM--IDKII----GNKPRLLILNKSDLADPEV---TKKWIEYF-EEQG--IKA   83 (287)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCCCCChh--HHHHh----CCCCEEEEEEchhcCCHHH---HHHHHHHH-HHcC--CeE
Confidence            34567899999999999998875543311  22222    2689999999999854210   11111111 2222  257


Q ss_pred             EEeCcccCCCchHHHHHHHHH
Q 010548          154 VECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      +.+||+++.|++++.+.+.+.
T Consensus        84 i~vSa~~~~gi~~L~~~l~~~  104 (287)
T PRK09563         84 LAINAKKGQGVKKILKAAKKL  104 (287)
T ss_pred             EEEECCCcccHHHHHHHHHHH
Confidence            999999999999988877554

>PRK12740 elongation factor G; Reviewed

Probab=99.45  E-value=6.9e-13  Score=145.81  Aligned_cols=224  Identities=13%  Similarity=0.095  Sum_probs=139.5

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCCCCC---------------CCCeeeC---CcccCCceEEEEEeCCCCccchhhhHHh
Q 010548           18 VGDRGTGKSSLIAAAATESVPEKVPPV---------------HAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKLNEE   79 (507)
Q Consensus        18 vG~~~vGKSSLin~l~~~~~~~~~~~~---------------~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   79 (507)
                      +|++|+|||||+++|+...-.......               ..+.|+.   ..+.++++.+.+|||||+.++......+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999754321111000               0111111   1233568899999999998877778889


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++.+|++++|+|++.+.+.....  ++..+...  ++|+++|+||+|+....    .......+...++...-...+...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~--~~~~~~~~--~~p~iiv~NK~D~~~~~----~~~~~~~l~~~l~~~~~~~~~p~~  152 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTET--VWRQAEKY--GVPRIIFVNKMDRAGAD----FFRVLAQLQEKLGAPVVPLQLPIG  152 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCCC----HHHHHHHHHHHHCCCceeEEeccc
Confidence            99999999999999876665543  44455554  79999999999987642    334555666666543334556666


Q ss_pred             cCCCchHHHHHHHHHHcCCC-CCCCc----c-chhcccHHHHHHHHHHHhhccCC------CCCccChhhhHHHHhH---
Q 010548          160 TMIQVPDVFYYAQKAVLHPT-APLFD----H-DEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNEFQVK---  224 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~~~-~~~~~----~-~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~~~~~---  224 (507)
                      .|.++..+.+.+........ .....    + .........+..+-+....+|++      ++..++.++++...++   
T Consensus       153 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~  232 (668)
T PRK12740        153 EGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATL  232 (668)
T ss_pred             CCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence            77776555443332211110 00000    0 00000112222222223333332      3456788888877664   


Q ss_pred             -------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548          225 -------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (507)
Q Consensus       225 -------~~~~~l~~~~~~~l~~~i~~~~~~~  249 (507)
                             +++++....|++.+++.+...+|+-
T Consensus       233 ~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp  264 (668)
T PRK12740        233 AGEIVPVFCGSALKNKGVQRLLDAVVDYLPSP  264 (668)
T ss_pred             cCCEEEEEeccccCCccHHHHHHHHHHHCCCh
Confidence                   7899999999999999999999975

>cd04144 Ras2 Ras2 subfamily

Probab=99.45  E-value=2.1e-13  Score=126.21  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=69.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|++|||||||+++|+++++...+.++.+..+. +.+...+....+.+|||+|+++|..++  ..+++.+|++++|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~~ilv   77 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALR--DQWIREGEGFILV   77 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHHhCCEEEEE
Confidence            6899999999999999999999998888888876653 445566666789999999999999887  6899999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        78 ~d~   80 (190)
T cd04144          78 YSI   80 (190)
T ss_pred             EEC
Confidence            995

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.45  E-value=3.1e-12  Score=121.94  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=106.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-------hhHHhhc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELK   81 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~   81 (507)
                      ..+|++||.|+||||||+++|++.+...+   ..+-+|   ++..+..++..++++|+||.-+..+       ..-...+
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva---~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVA---DYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCcccc---ccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            46899999999999999999998773222   112223   5666778899999999999764332       2335789


Q ss_pred             cCCEEEEEEeCCChhh-HHHHHHh----------------------------------------HHHHHHh---------
Q 010548           82 RADAVVLTYACNQQST-LSRLSSY----------------------------------------WLPELRR---------  111 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s-~~~~~~~----------------------------------------~~~~l~~---------  111 (507)
                      .||++++|+|+....+ .+.+...                                        ....++.         
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999986654 3222221                                        1111111         


Q ss_pred             ----------------cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          112 ----------------LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       112 ----------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                                      ...-+|.+.|.||+|+...       +....+.+..    .++.+||+.+.|+++|.+.|.+.+
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~~----~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARKP----NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhcc----ceEEEecccCCCHHHHHHHHHHhh
Confidence                            1113899999999998762       3334444443    589999999999999999999876

>PLN03108 Rab family protein; Provisional

Probab=99.45  E-value=4.2e-13  Score=126.16  Aligned_cols=84  Identities=21%  Similarity=0.368  Sum_probs=76.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|++.++...+.++.+.++....+.+.+....+.+|||+|++++..++  ..+++.+|++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~--~~~~~~ad~~   82 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT--RSYYRGAAGA   82 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCCEE
Confidence            46899999999999999999999999998888999988887778888777789999999999998877  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        83 vlv~D~   88 (210)
T PLN03108         83 LLVYDI   88 (210)
T ss_pred             EEEEEC
Confidence            999995

>cd04134 Rho3 Rho3 subfamily

Probab=99.44  E-value=3.5e-13  Score=124.63  Aligned_cols=80  Identities=23%  Similarity=0.374  Sum_probs=70.5

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|++|||||||+++|.++.+...+.+|.+..+. +.+..++....+.+|||+|+++|..++  ..+++++|++++|
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~--~~~~~~a~~~ilv   78 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLR--SLSYADTDVIMLC   78 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccc--cccccCCCEEEEE
Confidence            8999999999999999999999999888888887664 455666667889999999999998887  5789999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        79 ~dv   81 (189)
T cd04134          79 FSV   81 (189)
T ss_pred             EEC
Confidence            995

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.44  E-value=4.3e-13  Score=120.79  Aligned_cols=119  Identities=20%  Similarity=0.275  Sum_probs=78.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHH---hhccCCEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNE---ELKRADAVVL   88 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~~~ad~il~   88 (507)
                      .-.|+|+|+.|+|||+|+.+|..+.....+.+..+...... -...+..+.++|+||+.+.+.....   +...+.+|||
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf   81 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF   81 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence            34699999999999999999999876666665544433222 1234567999999999887764444   4889999999


Q ss_pred             EEeCCC-hhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCC
Q 010548           89 TYACNQ-QSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDH  131 (507)
Q Consensus        89 V~D~~~-~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~  131 (507)
                      |+|++. .....++.++++..+...   ...+|++|++||.|+....
T Consensus        82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            999974 445666666566555432   2479999999999997653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04112 Rab26 Rab26 subfamily

Probab=99.44  E-value=4.4e-13  Score=124.14  Aligned_cols=82  Identities=24%  Similarity=0.435  Sum_probs=71.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      +||+++|++|||||||+++|+++++.. .+.++.+..+..+.+.+++....+.+|||+|++++..+.  ..+++.+|+++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~i   78 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT--HAYYRDAHALL   78 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh--HHHccCCCEEE
Confidence            589999999999999999999999864 566777777766667777777899999999999998877  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 ~v~D~   83 (191)
T cd04112          79 LLYDI   83 (191)
T ss_pred             EEEEC
Confidence            99995

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=99.44  E-value=4.7e-13  Score=121.31  Aligned_cols=82  Identities=21%  Similarity=0.412  Sum_probs=73.8

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||++++++..+...+.++.+.++..+.+..++....+.+||++|++.+..++  ..++++||++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~i~   78 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG--VAFYRGADCCVL   78 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH--HHHhcCCCEEEE
Confidence            589999999999999999999999888888888888877778888777888999999999998887  689999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (172)
T cd01862          79 VYDV   82 (172)
T ss_pred             EEEC
Confidence            9996

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK00098 GTPase RsgA; Reviewed

Probab=99.44  E-value=1.4e-12  Score=128.88  Aligned_cols=85  Identities=16%  Similarity=0.120  Sum_probs=61.0

Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      ...++|++++|+|++++.+.......|+..++..  ++|+++|+||+|+......   ........+.++.  +++++||
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~~---~~~~~~~~~~~g~--~v~~vSA  149 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLEE---ARELLALYRAIGY--DVLELSA  149 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHHH---HHHHHHHHHHCCC--eEEEEeC
Confidence            3589999999999998876666544587777665  7999999999999632111   1122223334442  6899999


Q ss_pred             ccCCCchHHHHH
Q 010548          159 TTMIQVPDVFYY  170 (507)
Q Consensus       159 ~~g~gi~~l~~~  170 (507)
                      +++.|++++++.
T Consensus       150 ~~g~gi~~L~~~  161 (298)
T PRK00098        150 KEGEGLDELKPL  161 (298)
T ss_pred             CCCccHHHHHhh
Confidence            999999887754

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.43  E-value=1.2e-12  Score=135.55  Aligned_cols=166  Identities=15%  Similarity=0.148  Sum_probs=104.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc----------------------------------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY----------------------------------   55 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~----------------------------------   55 (507)
                      ...++|+++|+-..|||||+.+|++..-..-......+.|+..-|.                                  
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568999999999999999999997432111111111112111000                                  


Q ss_pred             --CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCCh-hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548           56 --PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus        56 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~  132 (507)
                        .....+.++||||++.|.......+..+|++++|+|++.+ ...+.. + .+..+...+ -.|+|+|+||+|+.+...
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-e-hl~i~~~lg-i~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-E-HLAAVEIMK-LKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-H-HHHHHHHcC-CCcEEEEEecccccCHHH
Confidence              0024689999999988877777888899999999999874 222222 2 223333332 246899999999975322


Q ss_pred             ccchhhhhHHHHHH-hcccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          133 ATSLEEVMGPIMQQ-FREIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       133 ~~~~~~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      .....+++..+... .....+++++||++|.|++.|++.|.+.+..+
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            10111222222222 12234799999999999999999998765433

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.43  E-value=4.3e-13  Score=120.72  Aligned_cols=81  Identities=22%  Similarity=0.400  Sum_probs=70.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++.+...+.++.+..+ .+.+..++...++.+|||+|++++..++  ..+++.+|++++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~~~~~i~   77 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMR--DQYMRTGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhCCEEEE
Confidence            5899999999999999999999999888888776544 4456666677889999999999998887  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        78 v~d~   81 (164)
T smart00173       78 VYSI   81 (164)
T ss_pred             EEEC
Confidence            9995

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04140 ARHI_like ARHI subfamily

Probab=99.43  E-value=5.4e-13  Score=120.43  Aligned_cols=81  Identities=23%  Similarity=0.419  Sum_probs=69.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.++.+..+ .+.+...++...+.+|||+|++++..+.  ..+++.+|++++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~il   78 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ--RLSISKGHAFIL   78 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHH--HHHhhcCCEEEE
Confidence            7999999999999999999999999888888877555 3445555567789999999999998877  678899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (165)
T cd04140          79 VYSV   82 (165)
T ss_pred             EEEC
Confidence            9995

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01863 Rab18 Rab18 subfamily

Probab=99.42  E-value=7.5e-13  Score=118.74  Aligned_cols=82  Identities=27%  Similarity=0.427  Sum_probs=72.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|++..+...+.++.+.++....+...+...++.+|||+|++++....  ..+++.+|++++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~~i~   78 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT--SSYYRGAQGVIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhCCCCEEEE
Confidence            589999999999999999999999988788888888877777777667889999999999988776  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (161)
T cd01863          79 VYDV   82 (161)
T ss_pred             EEEC
Confidence            9995

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.42  E-value=4.8e-13  Score=128.53  Aligned_cols=81  Identities=23%  Similarity=0.428  Sum_probs=70.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.+|++ ++..+.+.+++...++.||||+|++.|..++  ..+++.+|++|+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~--~~~~~~ad~iIl   77 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR--RLSILTGDVFIL   77 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHH--HHHhccCCEEEE
Confidence            5899999999999999999999999888877776 4555667777777889999999999998876  567899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        78 Vfdv   81 (247)
T cd04143          78 VFSL   81 (247)
T ss_pred             EEeC
Confidence            9995

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.42  E-value=3.9e-12  Score=118.31  Aligned_cols=165  Identities=18%  Similarity=0.105  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh---hh--------HH
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG---KL--------NE   78 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~---~~--------~~   78 (507)
                      ++|+++|.+|||||||+|++++......... ..+.|..   ......+..+.++||||......   ..        ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4799999999999999999998764322211 1122211   12224577899999999765421   11        12


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCCCCccc----hhhhhHHHHHHhcccC
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFREIE  151 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~  151 (507)
                      ...++|++|+|+++.+ .+-.+.  ..++.+++...   -.++++|.||+|.........    .......+.+..+.  
T Consensus        80 ~~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~--  154 (196)
T cd01852          80 SAPGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG--  154 (196)
T ss_pred             cCCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC--
Confidence            3467899999999887 343332  25556655422   268899999999765432200    11344555555543  


Q ss_pred             cEEEe-----CcccCCCchHHHHHHHHHHcCCCCCCC
Q 010548          152 TCVEC-----SATTMIQVPDVFYYAQKAVLHPTAPLF  183 (507)
Q Consensus       152 ~~~~~-----SA~~g~gi~~l~~~i~~~i~~~~~~~~  183 (507)
                      .++..     |+..+.++.+|++.|.+.+.....+.|
T Consensus       155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~  191 (196)
T cd01852         155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKENGGKPY  191 (196)
T ss_pred             eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCC
Confidence            23333     356788999999999888765444333

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.42  E-value=7.1e-13  Score=119.07  Aligned_cols=82  Identities=28%  Similarity=0.475  Sum_probs=73.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||++++++..+...+.++.+.++....+..++....+.+||++|++++....  ..+++.||++++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~il   78 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSIT--SSYYRGAVGALL   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHhCCCCEEEE
Confidence            589999999999999999999999988888888888877777777666789999999999988777  688999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (164)
T smart00175       79 VYDI   82 (164)
T ss_pred             EEEC
Confidence            9995

Rab GTPases are implicated in vesicle trafficking.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.42  E-value=6.9e-13  Score=119.23  Aligned_cols=82  Identities=21%  Similarity=0.360  Sum_probs=70.5

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++++++.+...+.++.+..+ .+...+.+...++.+|||+|++++..++  ..+++++|+++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~i   78 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMR--EQYMRTGEGFL   78 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHH--HHHHhhCCEEE
Confidence            47999999999999999999999998877777776544 4455667667789999999999999887  68899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 lv~d~   83 (164)
T cd04145          79 LVFSV   83 (164)
T ss_pred             EEEEC
Confidence            99995

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.42  E-value=7.7e-13  Score=118.81  Aligned_cols=81  Identities=25%  Similarity=0.381  Sum_probs=74.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|+++||||||+++|.++.+...+.+|.+.+...+.+...+....+.+||++|++++..+.  ...++++|++++|
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~ii~   78 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLR--DIFYRNSDAIIIV   78 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHH--HHHHTTESEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence            89999999999999999999999999999999888888888888888899999999999998877  6789999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        79 fd~   81 (162)
T PF00071_consen   79 FDV   81 (162)
T ss_dssp             EET
T ss_pred             ccc
Confidence            985

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.41  E-value=7.1e-13  Score=120.64  Aligned_cols=81  Identities=20%  Similarity=0.397  Sum_probs=69.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|.++.+...+.+|+...+ ...+..++...++.+|||+|++++..++  ..+++++|++++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~a~~~i~   77 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLVDGKPVRLQLCDTAGQDEFDKLR--PLCYPDTDVFLL   77 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCEEEEEEEEECCCChhhcccc--ccccCCCcEEEE
Confidence            5899999999999999999999999888888775444 4456677667889999999999999887  568999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        78 v~d~   81 (173)
T cd04130          78 CFSV   81 (173)
T ss_pred             EEEC
Confidence            9995

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04142 RRP22 RRP22 subfamily

Probab=99.41  E-value=5.6e-13  Score=124.00  Aligned_cols=84  Identities=25%  Similarity=0.339  Sum_probs=67.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc------chhhccc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS------NKEALAS  497 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~  497 (507)
                      +||+++|++|||||||+++|++++|...+.|+.+.+.....+..+|....+.+|||+|.+++.....      ...+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999988888887666556666776778899999999765432110      1345789


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      ||++++|||+
T Consensus        81 ad~iilv~D~   90 (198)
T cd04142          81 SRAFILVYDI   90 (198)
T ss_pred             CCEEEEEEEC
Confidence            9999999996

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN03118 Rab family protein; Provisional

Probab=99.41  E-value=1e-12  Score=123.64  Aligned_cols=83  Identities=28%  Similarity=0.434  Sum_probs=72.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+. .+.++.+.++.+..+..++....+.+|||+|+++|..++  ..+++.+|++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~~   89 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT--SSYYRNAQGI   89 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHHHhcCCEE
Confidence            4589999999999999999999998874 456777777777777777667789999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        90 vlv~D~   95 (211)
T PLN03118         90 ILVYDV   95 (211)
T ss_pred             EEEEEC
Confidence            999995

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.41  E-value=1e-12  Score=118.20  Aligned_cols=82  Identities=28%  Similarity=0.442  Sum_probs=70.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcC--CCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +||+++|++|||||||++++.++  .+...+.++.+.++..+.+... +...++.+|||+|++++..+.  ..+++++|+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~   78 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV--SNYWESPSV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH--HHHhCCCCE
Confidence            58999999999999999999865  6778888888877766666554 466899999999999998877  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        79 ii~v~d~   85 (164)
T cd04101          79 FILVYDV   85 (164)
T ss_pred             EEEEEEC
Confidence            9999995

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.6e-12  Score=129.68  Aligned_cols=163  Identities=16%  Similarity=0.222  Sum_probs=118.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CC----------CCCCCeeeCC---ccc---CCceEEEEEeCCCCccc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VP----------PVHAPTRLPP---DFY---PDRVPVTIIDTSSSLEN   72 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~----------~~~~~~t~~~---~~~---~~~~~~~i~Dt~G~~~~   72 (507)
                      +..+++||-+-.-|||||..||+...-...  ..          .-..++|+..   .+.   ...+.++++||||+-+|
T Consensus        59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            345799999999999999999986442111  00          1222344221   111   34589999999999999


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC-
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE-  151 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-  151 (507)
                      .......+..||++|+|+|+..+-.-+.+...|+. ++   .+.-+|.|+||+|++..+..    ....++.+-|.... 
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe---~~L~iIpVlNKIDlp~adpe----~V~~q~~~lF~~~~~  210 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FE---AGLAIIPVLNKIDLPSADPE----RVENQLFELFDIPPA  210 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HH---cCCeEEEeeeccCCCCCCHH----HHHHHHHHHhcCCcc
Confidence            99999999999999999999998666665543322 22   26889999999999987433    44445555554332 


Q ss_pred             cEEEeCcccCCCchHHHHHHHHHHcCCCCC
Q 010548          152 TCVECSATTMIQVPDVFYYAQKAVLHPTAP  181 (507)
Q Consensus       152 ~~~~~SA~~g~gi~~l~~~i~~~i~~~~~~  181 (507)
                      +++.+|||+|.|+.+++++|++.+..|...
T Consensus       211 ~~i~vSAK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  211 EVIYVSAKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             ceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence            689999999999999999999998776543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.41  E-value=3.6e-12  Score=125.27  Aligned_cols=83  Identities=18%  Similarity=0.129  Sum_probs=61.6

Q ss_pred             hhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           79 ELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      .+.++|++++|+|++++. ++..+.. |+..+...  ++|+++|+||+|+.....    ...........+  .+++.+|
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~~--~ip~iIVlNK~DL~~~~~----~~~~~~~~~~~g--~~v~~vS  145 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEAA--GIEPVIVLTKADLLDDEE----EELELVEALALG--YPVLAVS  145 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHHc--CCCEEEEEEHHHCCChHH----HHHHHHHHHhCC--CeEEEEE
Confidence            478999999999999987 7787775 87777765  799999999999965311    111122223333  2689999


Q ss_pred             cccCCCchHHHHH
Q 010548          158 ATTMIQVPDVFYY  170 (507)
Q Consensus       158 A~~g~gi~~l~~~  170 (507)
                      |+++.|+++++..
T Consensus       146 A~~g~gi~~L~~~  158 (287)
T cd01854         146 AKTGEGLDELREY  158 (287)
T ss_pred             CCCCccHHHHHhh
Confidence            9999999887654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.40  E-value=4.6e-12  Score=128.42  Aligned_cols=97  Identities=16%  Similarity=0.134  Sum_probs=65.7

Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHhc
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFR  148 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~  148 (507)
                      +++..+...+.+.++++++|+|+.+...      .|.+.+.+...++|+++|+||+|+...... ......+..+.+..+
T Consensus        51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g  124 (360)
T TIGR03597        51 DDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG  124 (360)
T ss_pred             HHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence            4566777788899999999999977532      255555555447899999999999753221 001111222344444


Q ss_pred             cc-CcEEEeCcccCCCchHHHHHHH
Q 010548          149 EI-ETCVECSATTMIQVPDVFYYAQ  172 (507)
Q Consensus       149 ~~-~~~~~~SA~~g~gi~~l~~~i~  172 (507)
                      .. ..++.+||++|.|++++++.|.
T Consensus       125 ~~~~~i~~vSAk~g~gv~eL~~~l~  149 (360)
T TIGR03597       125 LKPVDIILVSAKKGNGIDELLDKIK  149 (360)
T ss_pred             CCcCcEEEecCCCCCCHHHHHHHHH
Confidence            21 2489999999999999998763

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.40  E-value=8.9e-13  Score=122.59  Aligned_cols=77  Identities=17%  Similarity=0.263  Sum_probs=70.6

Q ss_pred             ecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          429 FGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       429 vG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ||++|||||||+++|+++.+...+.+|.+.++....+.++++..++.||||+|+++|..++  ..+|+++|++++|||+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~ilV~D~   77 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR--DGYYIQGQCAIIMFDV   77 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHhcCCCEEEEEEEC
Confidence            6999999999999999999988888999888877778888788899999999999999888  6899999999999996

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.39  E-value=6.4e-14  Score=115.37  Aligned_cols=78  Identities=22%  Similarity=0.390  Sum_probs=70.7

Q ss_pred             EecCCCCchHHHHHHHhcCCCCCC-CCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEe
Q 010548          428 LFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD  506 (507)
Q Consensus       428 ivG~~~vGKSsll~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D  506 (507)
                      ++|++++|||+|+-||-.+.|... ...|.|.+|..+.+..++.++++++|||+||++|+++.  ..|||+||+.+++||
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt--~ayyrda~allllyd   79 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT--HAYYRDADALLLLYD   79 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh--Hhhhcccceeeeeee
Confidence            689999999999999988877543 34688999999999999999999999999999999998  789999999999999


Q ss_pred             C
Q 010548          507 R  507 (507)
Q Consensus       507 ~  507 (507)
                      +
T Consensus        80 i   80 (192)
T KOG0083|consen   80 I   80 (192)
T ss_pred             c
Confidence            6

>cd04177 RSR1 RSR1 subgroup

Probab=99.39  E-value=1.2e-12  Score=118.44  Aligned_cols=81  Identities=26%  Similarity=0.404  Sum_probs=71.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++.+...+.++.+..+ .+.+..++...++.+|||+|+++|..++  ..+++.++++++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~vl   78 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMR--ELYIKSGQGFLL   78 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhh--HHHHhhCCEEEE
Confidence            7999999999999999999999999888888877555 5666777677899999999999999888  688999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~~~   82 (168)
T cd04177          79 VYSV   82 (168)
T ss_pred             EEEC
Confidence            9985

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.7e-12  Score=132.05  Aligned_cols=156  Identities=16%  Similarity=0.142  Sum_probs=112.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-----eCCcccC-CceEEEEEeCCCCccchhhhHHhhccCC
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-----LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-----~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      +..-|+++|+-.-|||||+..+-+.+......   .++|     +....+. ....+.++||||++-|..+...-..-+|
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea---GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD   80 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA---GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD   80 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccC---CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence            34579999999999999999998766433322   2233     1111111 3467999999999999999988889999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh---hhhHHHHHHhcccCcEEEeCcccC
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE---EVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ++++|+|++++--.+.++  -++.++..  +.|+++++||+|.++.... ...   .+.......++....++++||++|
T Consensus        81 IaILVVa~dDGv~pQTiE--AI~hak~a--~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          81 IAILVVAADDGVMPQTIE--AINHAKAA--GVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEEEEEEccCCcchhHHH--HHHHHHHC--CCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            999999999975555544  34445555  8999999999999865322 111   111223444555557999999999


Q ss_pred             CCchHHHHHHHHH
Q 010548          162 IQVPDVFYYAQKA  174 (507)
Q Consensus       162 ~gi~~l~~~i~~~  174 (507)
                      +|+++|++.+.-.
T Consensus       156 ~Gi~eLL~~ill~  168 (509)
T COG0532         156 EGIDELLELILLL  168 (509)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999987654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.38  E-value=2e-11  Score=124.62  Aligned_cols=81  Identities=23%  Similarity=0.384  Sum_probs=54.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCC--CCee---eCCc-----------------cc-CCceEEEEEeCCC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVH--APTR---LPPD-----------------FY-PDRVPVTIIDTSS   68 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~--~~~t---~~~~-----------------~~-~~~~~~~i~Dt~G   68 (507)
                      ++|+|||.||||||||+|+|++..+.. +++...  +..-   +...                 .. .....+++|||||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999877533 233211  1110   1000                 00 1236789999999


Q ss_pred             Ccc----chhhhH---HhhccCCEEEEEEeCC
Q 010548           69 SLE----NKGKLN---EELKRADAVVLTYACN   93 (507)
Q Consensus        69 ~~~----~~~~~~---~~~~~ad~il~V~D~~   93 (507)
                      ...    ...+..   ..++.||++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            642    233333   3489999999999997

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.38  E-value=2.3e-12  Score=133.95  Aligned_cols=154  Identities=14%  Similarity=0.110  Sum_probs=101.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC------C------------------C----CCCCCeeeC---CcccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------V------------------P----PVHAPTRLP---PDFYPD   57 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~------~------------------~----~~~~~~t~~---~~~~~~   57 (507)
                      ..+.++|+++|+.++|||||+.+|+...-...      +                  .    ....+.|+.   ..+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            35678999999999999999999974321000      0                  0    001112211   123456


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhH-------HHHHHhHHHHHHhcCCCC-cEEEEEecccCCC
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL-------SRLSSYWLPELRRLEIKV-PIIVAGCKLDLRG  129 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~-------~~~~~~~~~~l~~~~~~~-piilv~NK~Dl~~  129 (507)
                      +..++++||||+++|.......+..+|++|+|+|++++. +       ....+ .+..++..  ++ ++|+++||+|+..
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~e-h~~~~~~~--gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTRE-HALLAFTL--GVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHH-HHHHHHHc--CCCcEEEEEEcccCCc
Confidence            789999999999999998899999999999999998741 2       12222 33334444  56 4788999999862


Q ss_pred             CC--Cc--cchhhhhHHHHHHhcc---cCcEEEeCcccCCCchH
Q 010548          130 DH--NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (507)
Q Consensus       130 ~~--~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~  166 (507)
                      ..  ..  ....+++..+.++.+.   ..+++++||++|.|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11  10  0123344555555542   13799999999999864

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.38  E-value=4e-12  Score=132.17  Aligned_cols=154  Identities=15%  Similarity=0.108  Sum_probs=99.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------------C--CCCCCCeeeC---CcccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------------------------V--PPVHAPTRLP---PDFYPD   57 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--------------------------~--~~~~~~~t~~---~~~~~~   57 (507)
                      ..+.++|+++|+.++|||||+.+|+...-...                          .  .....+.|+.   ..+..+
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            35678999999999999999999985221000                          0  0011122211   223466


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh---H---HHHHHhHHHHHHhcCCCCc-EEEEEecccCCC-
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---L---SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRG-  129 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s---~---~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~-  129 (507)
                      +..+.++||||+.+|.......+..+|++++|+|++.+.-   +   ....+ .+..++..  ++| +|+++||+|... 
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~~~~--gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLAFTL--GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHHHHc--CCCeEEEEEEccccccc
Confidence            7899999999999998888888999999999999987531   0   12222 33345555  666 679999999542 


Q ss_pred             -CCCccchh---hhhHHHHHHhcc---cCcEEEeCcccCCCchH
Q 010548          130 -DHNATSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (507)
Q Consensus       130 -~~~~~~~~---~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~  166 (507)
                       ..+. ..+   .++..+....+.   ..+++++||.+|.|+.+
T Consensus       161 ~~~~~-~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQE-RYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHH-HHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             1111 122   233333333332   23789999999999964

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.38  E-value=1.4e-12  Score=118.67  Aligned_cols=79  Identities=23%  Similarity=0.375  Sum_probs=68.3

Q ss_pred             EEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEE
Q 010548          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY  505 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~  505 (507)
                      |+++|++|||||||+++|+++.+...+.++....+. ..+..++....+.+|||+|+++|..++  ..+++++|++++||
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~ilv~   77 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLR--PLSYPDTDVFLICF   77 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhc--hhhcCCCCEEEEEE
Confidence            589999999999999999999998888888776554 455667677789999999999998877  67899999999999


Q ss_pred             eC
Q 010548          506 DR  507 (507)
Q Consensus       506 D~  507 (507)
                      |+
T Consensus        78 d~   79 (174)
T smart00174       78 SV   79 (174)
T ss_pred             EC
Confidence            95

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04149 Arf6 Arf6 subfamily

Probab=99.37  E-value=2.1e-12  Score=116.95  Aligned_cols=79  Identities=22%  Similarity=0.261  Sum_probs=65.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|.+|||||||++++..+++.. +.||.+.++.  .+..  ...++.+|||+|++++..++  ..++++||++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~a~~i   80 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLW--RHYYTGTQGL   80 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence            35899999999999999999999888753 5566665443  2322  56789999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        81 i~v~D~   86 (168)
T cd04149          81 IFVVDS   86 (168)
T ss_pred             EEEEeC
Confidence            999996

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.37  E-value=2.2e-12  Score=115.76  Aligned_cols=77  Identities=21%  Similarity=0.290  Sum_probs=64.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|.+|||||||++++..+++. .+.||.+....  .+..  ...++.+|||+|++++..++  ..++++||++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~~i~   73 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF   73 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCEEEE
Confidence            58999999999999999999988886 46677665442  2332  56789999999999999888  689999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        74 v~D~   77 (159)
T cd04150          74 VVDS   77 (159)
T ss_pred             EEeC
Confidence            9995

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.36  E-value=2.7e-12  Score=116.80  Aligned_cols=81  Identities=21%  Similarity=0.365  Sum_probs=69.7

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      .||+++|++|||||||+++|+++.+...+.++.+..+. ..+...++...+.+|||+|++++..++  ..+++++|++++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~i~   78 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVILM   78 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhcc--ccccCCCCEEEE
Confidence            48999999999999999999999998888888876664 345666677789999999999998776  568899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~~~   82 (175)
T cd01870          79 CFSI   82 (175)
T ss_pred             EEEC
Confidence            9985

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.36  E-value=3.4e-12  Score=120.54  Aligned_cols=86  Identities=19%  Similarity=0.254  Sum_probs=76.3

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ....+||+++|++|||||||+++++.+.+...+.+|.+.++....+...++.+.+.+|||+|++++..++  ..+++.++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~   83 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQ   83 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCC
Confidence            3456899999999999999999999999988899999988877777667788899999999999998887  67899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        84 ~~i~v~d~   91 (215)
T PTZ00132         84 CAIIMFDV   91 (215)
T ss_pred             EEEEEEEC
Confidence            99999995

>cd04123 Rab21 Rab21 subfamily

Probab=99.36  E-value=3.3e-12  Score=114.30  Aligned_cols=82  Identities=24%  Similarity=0.362  Sum_probs=70.7

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|++..+...+.++.+..+....+...+....+.+||++|++.+..++  ..+++.+|++++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~   78 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALG--PIYYRDADGAIL   78 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhh--HHHhccCCEEEE
Confidence            589999999999999999999999887777777666666667666666788999999999998877  678899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (162)
T cd04123          79 VYDI   82 (162)
T ss_pred             EEEC
Confidence            9995

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.36  E-value=2.7e-12  Score=121.41  Aligned_cols=83  Identities=24%  Similarity=0.424  Sum_probs=75.7

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|.++.+...+.++++..+........+...++.+|||+|+++|+.++  ..|++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~--~~y~~~~~~~l   82 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLR--PEYYRGANGIL   82 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHH--HHHhcCCCEEE
Confidence            3899999999999999999999999999999999988877777666567889999999999999998  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||.
T Consensus        83 ~~~d~   87 (219)
T COG1100          83 IVYDS   87 (219)
T ss_pred             EEEec
Confidence            99985

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.36  E-value=3.3e-12  Score=117.41  Aligned_cols=82  Identities=20%  Similarity=0.227  Sum_probs=66.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEc-CCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      .+||+++|.+|||||||+++++.+++... .||.+.......+.. ++....+.+|||+|++++..++  ..++++||++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~i   79 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLW--KSYTRCTDGI   79 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHH--HHHhccCCEE
Confidence            48999999999999999999999888654 566654444333333 3356789999999999998887  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~D~   85 (183)
T cd04152          80 VFVVDS   85 (183)
T ss_pred             EEEEEC
Confidence            999996

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04126 Rab20 Rab20 subfamily

Probab=99.35  E-value=2.6e-12  Score=121.15  Aligned_cols=77  Identities=23%  Similarity=0.396  Sum_probs=65.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|.+|||||||+++|+++++.. +.+|.+..+.....    +...+.+|||+|+++|..++  ..+++++|++|+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~--~~~~~~ad~~Il   73 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLG--SMYCRGAAAVIL   73 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhH--HHHhccCCEEEE
Confidence            589999999999999999999999874 56677665543322    45678999999999999887  679999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        74 V~Dv   77 (220)
T cd04126          74 TYDV   77 (220)
T ss_pred             EEEC
Confidence            9996

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=4.6e-12  Score=108.82  Aligned_cols=160  Identities=14%  Similarity=0.199  Sum_probs=113.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.-|++++|-.|+|||||++.|-.++...-.|+..|...   .....+.+++.+|.+|+..-+..+..++..+|++++.
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE---~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH---HheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            4556999999999999999999988775444554333322   4456789999999999988888899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc------------ccCcEEEe
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR------------EIETCVEC  156 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  156 (507)
                      +|+-+.+.+.+....+-..+... -.+.|+++.+||+|.+..... ........+.+..+            .+...+.|
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se-~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE-DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH-HHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            99999988887766443333322 247999999999999876322 11111111111111            11246888


Q ss_pred             CcccCCCchHHHHHHHH
Q 010548          157 SATTMIQVPDVFYYAQK  173 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~  173 (507)
                      |...+.|..+.|.++..
T Consensus       174 si~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEccCccceeeeehhh
Confidence            98888887777776644

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.6e-11  Score=124.03  Aligned_cols=155  Identities=19%  Similarity=0.164  Sum_probs=113.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ++..-|.|+|+-.-|||||+..|-+......    +...+..++++..   .+.++++.||||+.-|..+...-..-+|+
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p---~G~~iTFLDTPGHaAF~aMRaRGA~vtDI  227 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP---SGKSITFLDTPGHAAFSAMRARGANVTDI  227 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC---CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence            4456799999999999999999987664322    2222233333333   56889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH------HHHhcccCcEEEeCcc
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI------MQQFREIETCVECSAT  159 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SA~  159 (507)
                      +++|+.+.|+--.+.++  -+...+..  +.|+|+++||||.+...    .+..++++      ...+|.-.+++++||+
T Consensus       228 vVLVVAadDGVmpQT~E--aIkhAk~A--~VpiVvAinKiDkp~a~----pekv~~eL~~~gi~~E~~GGdVQvipiSAl  299 (683)
T KOG1145|consen  228 VVLVVAADDGVMPQTLE--AIKHAKSA--NVPIVVAINKIDKPGAN----PEKVKRELLSQGIVVEDLGGDVQVIPISAL  299 (683)
T ss_pred             EEEEEEccCCccHhHHH--HHHHHHhc--CCCEEEEEeccCCCCCC----HHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence            99999999975444443  33344444  89999999999988653    23333333      2345555589999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKAV  175 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i  175 (507)
                      +|+|++.|-+.+.-.+
T Consensus       300 ~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  300 TGENLDLLEEAILLLA  315 (683)
T ss_pred             cCCChHHHHHHHHHHH
Confidence            9999999998876543

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.34  E-value=2.3e-12  Score=116.24  Aligned_cols=77  Identities=30%  Similarity=0.368  Sum_probs=65.9

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      +|+++|++|||||||+++|+++.+...+.||.+...    ..+.++..++.+|||+|++++..++  ..++++||++++|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~ii~V   74 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYW--KRYLSGSQGLIFV   74 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHH--HHHHhhCCEEEEE
Confidence            379999999999999999999988877888877543    2334467889999999999999888  6899999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        75 ~D~   77 (164)
T cd04162          75 VDS   77 (164)
T ss_pred             EEC
Confidence            995

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04135 Tc10 TC10 subfamily

Probab=99.34  E-value=3.8e-12  Score=115.71  Aligned_cols=81  Identities=23%  Similarity=0.413  Sum_probs=68.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+.++.+..+. ..+..++....+.+|||+|++.|..++  ..+++++|++++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~il   77 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDVFLI   77 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--cccCCCCCEEEE
Confidence            58999999999999999999999998777777664443 345666666778899999999998877  578999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        78 v~~~   81 (174)
T cd04135          78 CFSV   81 (174)
T ss_pred             EEEC
Confidence            9985

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04114 Rab30 Rab30 subfamily

Probab=99.33  E-value=7.2e-12  Score=113.30  Aligned_cols=84  Identities=24%  Similarity=0.409  Sum_probs=73.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++++++.+...+.++.+.++....+...+....+.+||++|++.+....  ..+++.+|++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~~   83 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT--QSYYRSANAL   83 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence            45899999999999999999999888877777787777777777777667789999999999988876  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        84 i~v~d~   89 (169)
T cd04114          84 ILTYDI   89 (169)
T ss_pred             EEEEEC
Confidence            999995

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00154 Rab Rab family

Probab=99.33  E-value=5.4e-12  Score=112.08  Aligned_cols=82  Identities=28%  Similarity=0.481  Sum_probs=73.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+...+....+.+||++|++.+....  ..+++++|++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~d~ii~   78 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT--PSYYRGAHGAIL   78 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH--HHHhcCCCEEEE
Confidence            589999999999999999999999998888888888877777777667889999999999988877  678899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |+|+
T Consensus        79 v~d~   82 (159)
T cd00154          79 VYDI   82 (159)
T ss_pred             EEEC
Confidence            9985

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.33  E-value=5.3e-12  Score=115.96  Aligned_cols=79  Identities=22%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++++..+++.. +.||.+..+.  .+..  ....+.+|||+|++++..++  ..+++++|++
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~ad~i   88 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLW--RHYYQNTNGL   88 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence            34899999999999999999999888764 5667665443  2332  56789999999999999887  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      |+|||+
T Consensus        89 I~v~D~   94 (182)
T PTZ00133         89 IFVVDS   94 (182)
T ss_pred             EEEEeC
Confidence            999996

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.32  E-value=6.2e-12  Score=115.35  Aligned_cols=79  Identities=20%  Similarity=0.282  Sum_probs=65.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++++..+++. .+.||.+...  ..+..  +...+.+||++|++++..++  ..++++||++
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~--~~~~~~i~D~~Gq~~~~~~~--~~~~~~a~~i   88 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGL   88 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE--CCEEEEEEECCCCHHHHHHH--HHHhccCCEE
Confidence            3489999999999999999999988876 4567766443  23332  56789999999999999988  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      |+|||+
T Consensus        89 I~V~D~   94 (181)
T PLN00223         89 IFVVDS   94 (181)
T ss_pred             EEEEeC
Confidence            999996

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.32  E-value=6.5e-12  Score=114.60  Aligned_cols=79  Identities=20%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|.+|||||||+++|..+++. .+.||.+.++.  .+..  +..++.+|||+|++++..++  ..++++||++
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~--~~~~~~ad~i   84 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLW--RHYYTNTQGL   84 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHH--HHHhCCCCEE
Confidence            3589999999999999999999887774 45677665443  2332  46789999999999999887  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        85 i~v~D~   90 (175)
T smart00177       85 IFVVDS   90 (175)
T ss_pred             EEEEEC
Confidence            999995

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.32  E-value=1.1e-11  Score=123.35  Aligned_cols=163  Identities=17%  Similarity=0.155  Sum_probs=117.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-------C-C----CCCCCeeeC-----Ccc---cCCceEEEEEeCCCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-------V-P----PVHAPTRLP-----PDF---YPDRVPVTIIDTSSS   69 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-------~-~----~~~~~~t~~-----~~~---~~~~~~~~i~Dt~G~   69 (507)
                      .+..+..|+-+-.-|||||..||+.....-+       . .    ....++|+.     ..+   +++.+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            3445689999999999999999986442111       0 0    012233322     112   235789999999999


Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (507)
                      -.|.......+..|.++++|+|++.+-.-+.+.+ .+-.+..   +.-+|-|.||+||+.....    ....++..-+|-
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle~---~LeIiPViNKIDLP~Adpe----rvk~eIe~~iGi  158 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALEN---NLEIIPVLNKIDLPAADPE----RVKQEIEDIIGI  158 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHHc---CcEEEEeeecccCCCCCHH----HHHHHHHHHhCC
Confidence            9999888999999999999999999865555554 3333332   6889999999999986433    334444444443


Q ss_pred             cC-cEEEeCcccCCCchHHHHHHHHHHcCCCC
Q 010548          150 IE-TCVECSATTMIQVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       150 ~~-~~~~~SA~~g~gi~~l~~~i~~~i~~~~~  180 (507)
                      .. ..+.||||+|.||+++++.|++.+..|..
T Consensus       159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         159 DASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             CcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence            21 47999999999999999999999877653

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.31  E-value=3.1e-12  Score=128.56  Aligned_cols=89  Identities=20%  Similarity=0.249  Sum_probs=74.2

Q ss_pred             cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccc
Q 010548          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSN  491 (507)
Q Consensus       418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~  491 (507)
                      +.-+..+|++++|+||||||||+|.++++++.++++.+||||+.+.....- +++.+.++||||.+.-..      +.++
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs  290 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERA  290 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHH
Confidence            334556999999999999999999999999999999999999988754444 678899999999865332      2345


Q ss_pred             hhhcccccEEEEEEeC
Q 010548          492 KEALASCDVTIFVYDR  507 (507)
Q Consensus       492 ~~~~~~ad~vilv~D~  507 (507)
                      ...+++||.+++|+|+
T Consensus       291 ~~~i~~ADlvL~v~D~  306 (454)
T COG0486         291 KKAIEEADLVLFVLDA  306 (454)
T ss_pred             HHHHHhCCEEEEEEeC
Confidence            6788999999999996

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.30  E-value=1.8e-11  Score=122.40  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=112.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCcc----chhhhHH-----
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLE----NKGKLNE-----   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~~-----   78 (507)
                      +....++|+|-||||||||+|.++...  ..+.+...++.  ....++.+-.+++++||||.-.    ..+.++.     
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtrad--vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRAD--DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccc--cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            445689999999999999999888766  33333222222  3445556677899999999753    2222221     


Q ss_pred             hhccCCEEEEEEeCCC--hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548           79 ELKRADAVVLTYACNQ--QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~--~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      ..+--.+|++++|++.  +.|...... ++..|+....|+|.|+|+||+|+..............+....-+.+ +++++
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v-~v~~t  321 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV-KVVQT  321 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCc-eEEEe
Confidence            1122357899999886  467776664 8888888888999999999999988766512222333333333332 78999


Q ss_pred             CcccCCCchHHHHHHHHHHc
Q 010548          157 SATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~  176 (507)
                      |+.+.+||.++.......++
T Consensus       322 S~~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALL  341 (620)
T ss_pred             cccchhceeeHHHHHHHHHH
Confidence            99999999998887776653

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.30  E-value=1e-11  Score=111.22  Aligned_cols=75  Identities=24%  Similarity=0.348  Sum_probs=62.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++.|...+.|+.+ .+ .+.+.++|....+.+|||+|++.       ..+++++|++++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~il   71 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-------AQFASWVDAVIF   71 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-------hhHHhcCCEEEE
Confidence            4899999999999999999999998877655533 44 46677877777899999999964       246788999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        72 v~d~   75 (158)
T cd04103          72 VFSL   75 (158)
T ss_pred             EEEC
Confidence            9995

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3.3e-12  Score=127.85  Aligned_cols=86  Identities=17%  Similarity=0.154  Sum_probs=73.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh-------hhhccchh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKE  493 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~  493 (507)
                      +..++|+|+|+||||||||+|.+.++++.++++.+++|++.+...... .+.++.+.||||.++-       -.+.++..
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            345899999999999999999999999999999999999999876655 6778899999998761       12344567


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      .+++||++++|+|+
T Consensus       345 ~~~~advi~~vvda  358 (531)
T KOG1191|consen  345 RIERADVILLVVDA  358 (531)
T ss_pred             HHhhcCEEEEEecc
Confidence            78899999999996

>cd04148 RGK RGK subfamily

Probab=99.29  E-value=9.6e-12  Score=117.85  Aligned_cols=80  Identities=18%  Similarity=0.353  Sum_probs=66.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCC-CCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcc-cccEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA-SCDVT  501 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~ad~v  501 (507)
                      +||+++|++|||||||+++|+++.+. ..+.++++.++..+.+.+.++...+.+|||+|++.+  +.  ..+++ ++|++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~--~~~~~~~ad~i   76 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TE--DSCMQYQGDAF   76 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HH--hHHhhcCCCEE
Confidence            58999999999999999999988886 677778776676777888777888999999999832  22  34566 89999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        77 ilV~d~   82 (221)
T cd04148          77 VVVYSV   82 (221)
T ss_pred             EEEEEC
Confidence            999996

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.29  E-value=6.4e-12  Score=113.30  Aligned_cols=80  Identities=25%  Similarity=0.397  Sum_probs=65.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh-hhhccchhhcccccEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-KKILSNKEALASCDVTIF  503 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~~~~~~~~~~~ad~vil  503 (507)
                      ||+++|++|||||||+++++++.+...+.++....+ ...+..+++..++.+|||+|++++ ....  ..+++++|++++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--~~~~~~~d~~i~   77 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQL--ERSIRWADGFVL   77 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchH--HHHHHhCCEEEE
Confidence            689999999999999999999998877877776555 344566667778999999999863 3233  578899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        78 v~d~   81 (165)
T cd04146          78 VYSI   81 (165)
T ss_pred             EEEC
Confidence            9995

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01850 CDC_Septin CDC/Septin

Probab=99.29  E-value=9e-12  Score=121.62  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=82.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCCee---eCCccc--CCceEEEEEeCCCCccchhh----
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-------VHAPTR---LPPDFY--PDRVPVTIIDTSSSLENKGK----   75 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-------~~~~~t---~~~~~~--~~~~~~~i~Dt~G~~~~~~~----   75 (507)
                      .++|+++|++|+|||||+|+|++..+......       ......   ....+.  +..+++.+|||||.......    
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999998876443111       111111   111222  33468999999996533210    


Q ss_pred             ----------hH------------Hhhc--cCCEEEEEEeCCC-hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           76 ----------LN------------EELK--RADAVVLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        76 ----------~~------------~~~~--~ad~il~V~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                                ..            ..+.  .+|+++++++.+. +.+..++.  +++.+..   ++|+++|+||+|+...
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~--~lk~l~~---~v~vi~VinK~D~l~~  158 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE--FMKRLSK---RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH--HHHHHhc---cCCEEEEEECCCcCCH
Confidence                      00            1122  4788899888765 22222222  5555543   6899999999999653


Q ss_pred             CCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548          131 HNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      .+...........+..++.  +++..+.
T Consensus       159 ~e~~~~k~~i~~~l~~~~i--~~~~~~~  184 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNI--KIYKFPE  184 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCC--ceECCCC
Confidence            2221223334444444442  4565554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd00157 Rho Rho (Ras homology) family

Probab=99.29  E-value=1.2e-11  Score=112.05  Aligned_cols=81  Identities=20%  Similarity=0.353  Sum_probs=67.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++.+...+.++....+. ..+...+...++.+|||+|++.+....  ..+++.+|++++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~D~~g~~~~~~~~--~~~~~~~~~~i~   77 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS-ATVTVDGKQVNLGLWDTAGQEEYDRLR--PLSYPNTDVFLI   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEeCCCcccccccc--hhhcCCCCEEEE
Confidence            58999999999999999999999987677676664443 345556678899999999999887666  567899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        78 v~d~   81 (171)
T cd00157          78 CFSV   81 (171)
T ss_pred             EEEC
Confidence            9995

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.29  E-value=9.1e-12  Score=116.03  Aligned_cols=80  Identities=24%  Similarity=0.317  Sum_probs=68.1

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|++|||||||+++|+++++...+.++... .....+.+.+...++.+|||+|+.+|..++  ..+++.||++++|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--~~~~~~ad~vilv   77 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMR--KLSIQNSDAFALV   77 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHH--HHHhhcCCEEEEE
Confidence            6899999999999999999999998777777653 445556667666789999999999998877  5789999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        78 ~d~   80 (198)
T cd04147          78 YAV   80 (198)
T ss_pred             EEC
Confidence            995

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK13796 GTPase YqeH; Provisional

Probab=99.29  E-value=5.7e-11  Score=120.60  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             HhhccCC-EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-cCcEE
Q 010548           78 EELKRAD-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-IETCV  154 (507)
Q Consensus        78 ~~~~~ad-~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-~~~~~  154 (507)
                      ..+..++ +|++|+|+.+...      .|.+.+.+...++|+++|+||+|+...... ....+....+.+.++. ...++
T Consensus        64 ~~i~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~  137 (365)
T PRK13796         64 NGIGDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV  137 (365)
T ss_pred             HhhcccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence            4455555 9999999987531      256666654447899999999999653211 0011112223333332 12579


Q ss_pred             EeCcccCCCchHHHHHHH
Q 010548          155 ECSATTMIQVPDVFYYAQ  172 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~  172 (507)
                      .+||+++.|++++++.|.
T Consensus       138 ~vSAk~g~gI~eL~~~I~  155 (365)
T PRK13796        138 LISAQKGHGIDELLEAIE  155 (365)
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            999999999999988763

>cd04154 Arl2 Arl2 subfamily

Probab=99.28  E-value=1.5e-11  Score=111.86  Aligned_cols=80  Identities=24%  Similarity=0.411  Sum_probs=64.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||++++.+..+. .+.+|.+  +....+...  ..++.+|||+|++++...+  ..+++++|+
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~--~~~~~~~d~   84 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYW--RNYFESTDA   84 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCE
Confidence            34589999999999999999999988653 4455555  333444443  5778999999999988877  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        85 ~i~v~d~   91 (173)
T cd04154          85 LIWVVDS   91 (173)
T ss_pred             EEEEEEC
Confidence            9999995

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=7.7e-11  Score=127.00  Aligned_cols=232  Identities=11%  Similarity=0.077  Sum_probs=147.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---------------CCeeeC---CcccCCc-eEEEEEeCCCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH---------------APTRLP---PDFYPDR-VPVTIIDTSSS   69 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~---------------~~~t~~---~~~~~~~-~~~~i~Dt~G~   69 (507)
                      ..+..+|.|+|+-.+|||||..+++...-........               .+.|+.   ..+.+++ +.++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            3456789999999999999999998544222211111               111211   1233664 99999999999


Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (507)
                      -+|......+++-+|++++|+|+..+-..+.-.  .++...++  ++|.++++||+|....+    .......+...++.
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt--v~rqa~~~--~vp~i~fiNKmDR~~a~----~~~~~~~l~~~l~~  158 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET--VWRQADKY--GVPRILFVNKMDRLGAD----FYLVVEQLKERLGA  158 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHH--HHHHHhhc--CCCeEEEEECccccccC----hhhhHHHHHHHhCC
Confidence            999999999999999999999999885554433  55556665  79999999999987653    33444555566654


Q ss_pred             cCcE--EEeCcccCCCchHHHHHHHHHHcCCC-CCCCc-----cchhcccHHHHHHHHHHHhhccCC------CCCccCh
Q 010548          150 IETC--VECSATTMIQVPDVFYYAQKAVLHPT-APLFD-----HDEQTLKPRCVRALKRIFIICDHD------MDGALND  215 (507)
Q Consensus       150 ~~~~--~~~SA~~g~gi~~l~~~i~~~i~~~~-~~~~~-----~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~  215 (507)
                      ....  +++.+  ...+....+.+........ ...+.     ........+++..+.......|++      ++..++.
T Consensus       159 ~~~~v~~pIg~--~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~  236 (697)
T COG0480         159 NPVPVQLPIGA--EEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTE  236 (697)
T ss_pred             CceeeeccccC--ccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccH
Confidence            3212  22333  2222222222222221111 11110     111122234555555444444432      3445788


Q ss_pred             hhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548          216 AELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV  250 (507)
Q Consensus       216 ~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~  250 (507)
                      +++....++          .+++++...+++.+++.+.+.+|+=.
T Consensus       237 ~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~  281 (697)
T COG0480         237 EEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL  281 (697)
T ss_pred             HHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChh
Confidence            888888776          78889999999999999999999843

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.27  E-value=1.7e-11  Score=104.06  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCC--CCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      ||+|+|++|||||||+++|++..+.  ..+.++.+..+........+....+.+||++|++.+...+  ...+.++|+++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~d~~i   78 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--QFFLKKADAVI   78 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--HHHHHHSCEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--cchhhcCcEEE
Confidence            7999999999999999999999886  2333444555655666666566678999999998888765  45589999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 lv~D~   83 (119)
T PF08477_consen   79 LVYDL   83 (119)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99995

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.27  E-value=8e-11  Score=106.55  Aligned_cols=56  Identities=23%  Similarity=0.159  Sum_probs=43.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~  482 (507)
                      .++++++|.||||||||+|++.+.+...++..+++|+. ...+...   ..+.++||+|.
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~-~~~~~~~---~~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS-MQEVHLD---KKVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc-eEEEEeC---CCEEEEECcCC
Confidence            47999999999999999999999887777777776665 3344443   24678999984

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.27  E-value=1.7e-11  Score=113.62  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             EEEEEecCCCCchHHHHH-HHhcCC-----CCCCCCCCccc-e-eEEE-------EEEcCCCeEEEEEEecCCchhhhhh
Q 010548          424 FRCLLFGPQNAGKSALLN-SFLERP-----FSENYAPTTGE-Q-YAVN-------VVDQPGGNKKTLILQEIPEEGVKKI  488 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~-~l~~~~-----~~~~~~~t~~~-~-~~~~-------~~~~~~~~~~~~i~Dt~G~~~~~~~  488 (507)
                      +||+++|++|||||||+. ++.++.     +...+.||.+. + +...       .+.++|..+++.+|||+|++++  +
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~   80 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D   80 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence            799999999999999996 666543     44566777752 2 3222       1245667889999999999762  3


Q ss_pred             ccchhhcccccEEEEEEeC
Q 010548          489 LSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       489 ~~~~~~~~~ad~vilv~D~  507 (507)
                      .  ..+|++||++++|||+
T Consensus        81 ~--~~~~~~ad~iilv~d~   97 (195)
T cd01873          81 R--RFAYGRSDVVLLCFSI   97 (195)
T ss_pred             h--cccCCCCCEEEEEEEC
Confidence            3  4689999999999995

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=3.6e-13  Score=114.39  Aligned_cols=85  Identities=14%  Similarity=0.292  Sum_probs=74.8

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC---------CCeEEEEEEecCCchhhhhhccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP---------GGNKKTLILQEIPEEGVKKILSN  491 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~Dt~G~~~~~~~~~~  491 (507)
                      ++.||.+.+|++||||||++.+|..++|......|.|++|..+.+..+         +..+.+++||||||++|+++.  
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT--   84 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT--   84 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH--
Confidence            467899999999999999999999999998888999999987766554         134578899999999999998  


Q ss_pred             hhhcccccEEEEEEeC
Q 010548          492 KEALASCDVTIFVYDR  507 (507)
Q Consensus       492 ~~~~~~ad~vilv~D~  507 (507)
                      -..+|+|-+++++||.
T Consensus        85 TAFfRDAMGFlLiFDl  100 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDL  100 (219)
T ss_pred             HHHHHhhccceEEEec
Confidence            6799999999999995

>cd01893 Miro1 Miro1 subfamily

Probab=99.26  E-value=2e-11  Score=110.23  Aligned_cols=80  Identities=23%  Similarity=0.306  Sum_probs=62.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++...+..+. ..+ .......+...++.+|||+|.+.+...+  ..+++.+|++++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~ad~~il   76 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANL--AAEIRKANVICL   76 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHH--hhhcccCCEEEE
Confidence            489999999999999999999999876544332 222 2223445577889999999998877665  567899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        77 v~d~   80 (166)
T cd01893          77 VYSV   80 (166)
T ss_pred             EEEC
Confidence            9995

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01882 BMS1 Bms1

Probab=99.26  E-value=1.1e-10  Score=110.64  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=90.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+...|+|+|.+|+|||||++.+.+..-...........++   ....+.++.++||||..   ......++.+|++++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i---~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVll  109 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITV---VTGKKRRLTFIECPNDI---NAMIDIAKVADLVLL  109 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEE---EecCCceEEEEeCCchH---HHHHHHHHhcCEEEE
Confidence            345678999999999999999999875321111111111121   12356789999999843   333356789999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcE-EEEEecccCCCCCCccchhhhhHH----HHHHhcccCcEEEeCcccCCC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLDLRGDHNATSLEEVMGP----IMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      |+|++.+......  .++..++..  ++|. ++|+||+|+.+....  ..+....    +...+....+++.+||++.-.
T Consensus       110 viDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~--~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         110 LIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKT--LRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHH--HHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9999876544432  266666665  5775 459999998743221  1121222    222222234899999998754


Q ss_pred             c
Q 010548          164 V  164 (507)
Q Consensus       164 i  164 (507)
                      +
T Consensus       184 ~  184 (225)
T cd01882         184 Y  184 (225)
T ss_pred             C
Confidence            4

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.26  E-value=2e-11  Score=109.55  Aligned_cols=81  Identities=26%  Similarity=0.398  Sum_probs=69.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++++..++...+.++.+..+ .+....+++...+.+|||+|++++....  ..+++.++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i~   77 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIR--DNYHRSGEGFLL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHH--HHHhhcCCEEEE
Confidence            5899999999999999999999999887777766544 3445666677889999999999998877  679999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        78 v~d~   81 (164)
T cd04139          78 VFSI   81 (164)
T ss_pred             EEEC
Confidence            9985

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04157 Arl6 Arl6 subfamily

Probab=99.25  E-value=1.9e-11  Score=109.55  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=62.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC-CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +|+++|++|||||||+++|.+..+ ...+.||.+....  .+.  .+..++.+|||+|++++..++  ..+++.+|++++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~ii~   74 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLW--EHYYKNIQGIIF   74 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHH--HHHHccCCEEEE
Confidence            589999999999999999998763 4556677764432  222  256788999999999999888  688999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        75 v~D~   78 (162)
T cd04157          75 VIDS   78 (162)
T ss_pred             EEeC
Confidence            9996

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.25  E-value=4.6e-11  Score=112.54  Aligned_cols=163  Identities=12%  Similarity=0.198  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-cc-cCCceEEEEEeCCCCccchh-----hhHHhhccCCEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DF-YPDRVPVTIIDTSSSLENKG-----KLNEELKRADAV   86 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-~~-~~~~~~~~i~Dt~G~~~~~~-----~~~~~~~~ad~i   86 (507)
                      ||+++|++++||||+.+-+..+..+.......++..+.. .+ ......+++||+||+..+..     .....++++.++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            799999999999999988876653222211111111111 11 14567999999999975543     345778999999


Q ss_pred             EEEEeCCChhhHHHHHH--hHHHHHHhcCCCCcEEEEEecccCCCCCCcc-chhhhhHHHHHHhcc----cCcEEEeCcc
Q 010548           87 VLTYACNQQSTLSRLSS--YWLPELRRLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFRE----IETCVECSAT  159 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~--~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~SA~  159 (507)
                      |+|+|+.+.+-.+++..  ..+..+.+..+++.+.+.++|+|+..+.... ......+.+......    ...++.+|.-
T Consensus        81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~  160 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW  160 (232)
T ss_dssp             EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred             EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence            99999995543333332  1445566677899999999999997642210 111122222222221    1257888887


Q ss_pred             cCCCchHHHHHHHHHHcC
Q 010548          160 TMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~  177 (507)
                      + +.+-+.+..++..+..
T Consensus       161 D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  161 D-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             S-THHHHHHHHHHHTTST
T ss_pred             C-cHHHHHHHHHHHHHcc
Confidence            7 5788888887777653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.25  E-value=1.8e-11  Score=100.34  Aligned_cols=135  Identities=21%  Similarity=0.245  Sum_probs=93.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--h----HHhhccCCEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--L----NEELKRADAVV   87 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--~----~~~~~~ad~il   87 (507)
                      |+++||..|+|||||+++|.+....  +.     .|..+++...    -.+||||  +|...  +    .....++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--yk-----KTQAve~~d~----~~IDTPG--Ey~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YK-----KTQAVEFNDK----GDIDTPG--EYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hc-----ccceeeccCc----cccCCch--hhhhhhHHHHHHHHHhhccceee
Confidence            7999999999999999999987621  11     1222222221    2589999  33322  2    23458899999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|-.+++++|.-.      +.+.... .+|+|-|++|+|+..+..+    .....+..+-| ..++|++|+.++.|++++
T Consensus        70 ~v~~and~~s~f~------p~f~~~~-~k~vIgvVTK~DLaed~dI----~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l  137 (148)
T COG4917          70 YVHAANDPESRFP------PGFLDIG-VKKVIGVVTKADLAEDADI----SLVKRWLREAG-AEPIFETSAVDNQGVEEL  137 (148)
T ss_pred             eeecccCccccCC------ccccccc-ccceEEEEecccccchHhH----HHHHHHHHHcC-CcceEEEeccCcccHHHH
Confidence            9999999865322      2222222 4679999999999864333    34455666666 348999999999999999


Q ss_pred             HHHHHH
Q 010548          168 FYYAQK  173 (507)
Q Consensus       168 ~~~i~~  173 (507)
                      ++.+..
T Consensus       138 ~~~L~~  143 (148)
T COG4917         138 VDYLAS  143 (148)
T ss_pred             HHHHHh
Confidence            998864

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=5.3e-11  Score=106.94  Aligned_cols=158  Identities=23%  Similarity=0.250  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc---cCCEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK---RADAVVLT   89 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---~ad~il~V   89 (507)
                      -.|.++|..++|||+|+-+|..+.+...+++..|..-   .+..+.-..+++|.||+.+-+.....++.   .+-+++||
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a---~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA---TYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeeecccee---eEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            4699999999999999999998876555555444322   22233344899999999887777777776   79999999


Q ss_pred             EeCCC-hhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCcc----chhhhhHHHHHHhc-------------
Q 010548           90 YACNQ-QSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNAT----SLEEVMGPIMQQFR-------------  148 (507)
Q Consensus        90 ~D~~~-~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~-------------  148 (507)
                      +|... .....++.++++..+...   ...+|+++++||.|+.......    ..+.++..+...-.             
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~  195 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD  195 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            99764 344555555566655544   2368999999999997653210    11122222211111             


Q ss_pred             -----------------ccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          149 -----------------EIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       149 -----------------~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                                       ....+.++|++++ +++++-+||.+.
T Consensus       196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                             1125788899888 899988888654

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.23  E-value=3.7e-11  Score=109.50  Aligned_cols=78  Identities=23%  Similarity=0.355  Sum_probs=64.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++++++++.. +.++.+..+.  .+..  +..++.+|||+|++++...+  ..++++||+++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~vi   87 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSW--NTYYTNTDAVI   87 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHH--HHHhhcCCEEE
Confidence            4799999999999999999999988875 4566665443  2333  36789999999999998877  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        88 ~V~D~   92 (174)
T cd04153          88 LVIDS   92 (174)
T ss_pred             EEEEC
Confidence            99996

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04158 ARD1 ARD1 subfamily

Probab=99.23  E-value=3.2e-11  Score=109.33  Aligned_cols=76  Identities=24%  Similarity=0.321  Sum_probs=62.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|.+|||||||+++|.+..+.. +.+|.+.++.  .+..  ...++.+|||+|++++...+  ..+++++|++++|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~--~~~~~~ad~ii~V   73 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLW--KHYYLNTQAVVFV   73 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHH--HHHhccCCEEEEE
Confidence            68999999999999999999987754 5666665443  2322  56789999999999988877  6789999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        74 ~D~   76 (169)
T cd04158          74 VDS   76 (169)
T ss_pred             EeC
Confidence            995

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.23  E-value=3.4e-11  Score=108.93  Aligned_cols=76  Identities=22%  Similarity=0.267  Sum_probs=63.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      +|+++|.+|||||||+++|.++ +...+.||.+..  ...+..  +..++.+||++|+++++.++  ..++++||++++|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~--~~~~~~a~~ii~V   73 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIW--VNYYAEAHGLVFV   73 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHH--HHHHcCCCEEEEE
Confidence            4799999999999999999977 666777777753  233443  46788999999999999888  7899999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        74 ~D~   76 (167)
T cd04161          74 VDS   76 (167)
T ss_pred             EEC
Confidence            995

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG1159 Era GTPase [General function prediction only]

Probab=99.23  E-value=1.7e-11  Score=116.46  Aligned_cols=84  Identities=20%  Similarity=0.238  Sum_probs=70.9

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccchhhcc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEALA  496 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~~  496 (507)
                      .-.|++||+||||||||+|++++.+.+++++.+.|||..+..+... +..++.++||+|..+-+.      ...+...+.
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            4579999999999999999999999999999999999999988888 677899999999643211      112256789


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+|++++|+|+
T Consensus        85 dvDlilfvvd~   95 (298)
T COG1159          85 DVDLILFVVDA   95 (298)
T ss_pred             cCcEEEEEEec
Confidence            99999999996

>cd00876 Ras Ras family

Probab=99.22  E-value=3.9e-11  Score=107.09  Aligned_cols=80  Identities=24%  Similarity=0.326  Sum_probs=67.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|++|||||||++++++..+...+.++.. ..........+...++.+||++|++.+....  ..+++.+|++++|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v   77 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMR--DLYIRQGDGFILV   77 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHH--HHHHhcCCEEEEE
Confidence            689999999999999999999988877777766 3444555666556788999999999988877  6788999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        78 ~d~   80 (160)
T cd00876          78 YSI   80 (160)
T ss_pred             EEC
Confidence            995

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04171 SelB SelB subfamily

Probab=99.21  E-value=3.8e-11  Score=107.70  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC---CCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP---FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      -|+++|++|||||||+++|++..   +...+.++.+.......+... ...++.+|||+|+++|....  ..+++.||++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~--~~~~~~ad~i   78 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-SGKRLGFIDVPGHEKFIKNM--LAGAGGIDLV   78 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-CCcEEEEEECCChHHHHHHH--HhhhhcCCEE
Confidence            58999999999999999999753   222222333333333334443 24578899999999887554  5678899999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        79 i~V~d~   84 (164)
T cd04171          79 LLVVAA   84 (164)
T ss_pred             EEEEEC
Confidence            999995

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.21  E-value=5.2e-11  Score=108.97  Aligned_cols=81  Identities=21%  Similarity=0.347  Sum_probs=67.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      .||+++|.+|||||||+++|.+..+...+.++.+..+ ...+...+....+.+|||+|++++..++  ..++..++++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~   78 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILP--QKYSIGIHGYIL   78 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHH--HHHHhhCCEEEE
Confidence            5899999999999999999999988777777665444 4455666566678899999999988776  678899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (180)
T cd04137          79 VYSV   82 (180)
T ss_pred             EEEC
Confidence            9985

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.21  E-value=4.8e-11  Score=106.81  Aligned_cols=77  Identities=25%  Similarity=0.341  Sum_probs=62.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|++|||||||+++|.++++... .+|.+..  ...+..+ +...+.+|||+|++++...+  ..+++.+|++++|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~~--~~~~~~~~~iv~v   74 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTVW--KCYLENTDGLVYV   74 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHHH--HHHhccCCEEEEE
Confidence            589999999999999999999988643 4555533  3344444 56789999999999988877  6789999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        75 ~D~   77 (160)
T cd04156          75 VDS   77 (160)
T ss_pred             EEC
Confidence            995

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.20  E-value=2e-12  Score=112.06  Aligned_cols=84  Identities=14%  Similarity=0.356  Sum_probs=77.9

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...||++|+|..+|||||+++||+.+-|...|..++++++..+.+.+.++.+.+.+|||+|++.|..+.  ..|||+|.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaIt--kAyyrgaqa   95 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAIT--KAYYRGAQA   95 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHH--HHHhccccc
Confidence            356999999999999999999999999999999999999988888888888888999999999999987  689999999


Q ss_pred             EEEEEe
Q 010548          501 TIFVYD  506 (507)
Q Consensus       501 vilv~D  506 (507)
                      .+|||.
T Consensus        96 ~vLVFS  101 (246)
T KOG4252|consen   96 SVLVFS  101 (246)
T ss_pred             eEEEEe
Confidence            999985

>cd04151 Arl1 Arl1 subfamily

Probab=99.20  E-value=4.2e-11  Score=107.16  Aligned_cols=76  Identities=24%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|++|||||||++++..+.+.. +.+|.+.+..  .+..  ...++.+|||+|++++..++  ..+++.+|++++|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~ii~v   73 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYW--RCYYSNTDAIIYV   73 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHH--HHHhcCCCEEEEE
Confidence            68999999999999999998887753 4455554432  2322  45788999999999998887  6789999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        74 ~d~   76 (158)
T cd04151          74 VDS   76 (158)
T ss_pred             EEC
Confidence            995

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.18  E-value=1.8e-11  Score=110.79  Aligned_cols=83  Identities=23%  Similarity=0.429  Sum_probs=73.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEc-CCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ-PGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ..+||+|||+.+||||+|+..|..+.|...|.||.-..|+.. +.+ .|+.+.+-+||||||+.|..++  +-.|.++|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrlR--plsY~~tdv   79 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRLR--PLSYPQTDV   79 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCccccccc--ccCCCCCCE
Confidence            358999999999999999999999999999999998767554 566 4789999999999999999877  568999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      ++++|++
T Consensus        80 fl~cfsv   86 (198)
T KOG0393|consen   80 FLLCFSV   86 (198)
T ss_pred             EEEEEEc
Confidence            9999974

>PRK13768 GTPase; Provisional

Probab=99.18  E-value=2.9e-10  Score=109.71  Aligned_cols=118  Identities=18%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             eEEEEEeCCCCccch---hhhH---Hhhcc--CCEEEEEEeCCChhhHHHHHHh-HHHHHHhcCCCCcEEEEEecccCCC
Q 010548           59 VPVTIIDTSSSLENK---GKLN---EELKR--ADAVVLTYACNQQSTLSRLSSY-WLPELRRLEIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~---~~~~---~~~~~--ad~il~V~D~~~~~s~~~~~~~-~~~~l~~~~~~~piilv~NK~Dl~~  129 (507)
                      ..+.+|||||+.+..   ....   ..+..  ++++++|+|++...+..+.... |+........++|+++|+||+|+..
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence            368999999976532   2222   22333  8999999999766544443321 3332222223799999999999976


Q ss_pred             CCCccchhhhhH------------------------HHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          130 DHNATSLEEVMG------------------------PIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       130 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ..+.........                        .....++...+++++||+++.|+++++++|.+.+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            533201111011                        11222332337899999999999999999988763

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.18  E-value=9.9e-11  Score=103.99  Aligned_cols=76  Identities=25%  Similarity=0.347  Sum_probs=65.0

Q ss_pred             EEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEE
Q 010548          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY  505 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~  505 (507)
                      |+++|++|||||||++++.+.++...+.++.+..+.  .+..  +...+.+||++|++++...+  ..+++.+|++++|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~--~~~~~~~d~ii~v~   75 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTK--GNVTLKVWDLGGQPRFRSMW--ERYCRGVNAIVYVV   75 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHH--HHHHhcCCEEEEEE
Confidence            799999999999999999999998888888776553  2333  34789999999999998877  68899999999999


Q ss_pred             eC
Q 010548          506 DR  507 (507)
Q Consensus       506 D~  507 (507)
                      |+
T Consensus        76 d~   77 (159)
T cd04159          76 DA   77 (159)
T ss_pred             EC
Confidence            95

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.17  E-value=1.6e-10  Score=127.49  Aligned_cols=117  Identities=11%  Similarity=0.110  Sum_probs=82.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCC--CCCCeeeC-------CcccCCceEEEEEeCCCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE-----------KVPP--VHAPTRLP-------PDFYPDRVPVTIIDTSSS   69 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~-----------~~~~--~~~~~t~~-------~~~~~~~~~~~i~Dt~G~   69 (507)
                      ....+|+|+|+.++|||||+++|+...-..           ...+  ...+.|+.       ..+.+.++.+++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            345799999999999999999998532100           0000  00112211       124567899999999999


Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      .++......+++.+|++|+|+|+..+...+...  .+..+.+.  ++|+++++||+|....
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~--~~~~~~~~--~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET--VLRQALKE--NVKPVLFINKVDRLIN  153 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHH--HHHHHHHc--CCCEEEEEEChhcccc
Confidence            988888889999999999999998864433322  33334344  6788999999998653

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.17  E-value=5.1e-11  Score=110.56  Aligned_cols=81  Identities=16%  Similarity=0.211  Sum_probs=62.8

Q ss_pred             EEEEecCCCCchHHHHHHHhc--CCCCCCC------------CCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE--RPFSENY------------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS  490 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~  490 (507)
                      +|+++|.+|||||||+++|++  +.+...+            ..+.++.+..+...+.++..++.+|||+|+++|.... 
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-   82 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV-   82 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH-
Confidence            799999999999999999997  4554332            1223444444444445567889999999999998877 


Q ss_pred             chhhcccccEEEEEEeC
Q 010548          491 NKEALASCDVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~ad~vilv~D~  507 (507)
                       ..+++++|++++|||+
T Consensus        83 -~~~~~~~d~~ilV~d~   98 (194)
T cd01891          83 -ERVLSMVDGVLLLVDA   98 (194)
T ss_pred             -HHHHHhcCEEEEEEEC
Confidence             6899999999999996

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.16  E-value=5.3e-11  Score=109.96  Aligned_cols=82  Identities=26%  Similarity=0.378  Sum_probs=74.3

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|.+|||||+|+.+|+++.|...|+||+...| .+.+.++++...+.|+||+|++.|..+.  ..+++++|+++
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~~--~~~~~~~~gF~   79 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAMR--DLYIRNGDGFL   79 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHHH--HHhhccCcEEE
Confidence            47999999999999999999999999999999999655 5567777788899999999999999887  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +||++
T Consensus        80 lVysi   84 (196)
T KOG0395|consen   80 LVYSI   84 (196)
T ss_pred             EEEEC
Confidence            99985

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.16  E-value=3.1e-10  Score=126.93  Aligned_cols=147  Identities=21%  Similarity=0.219  Sum_probs=92.2

Q ss_pred             CCHHHHHHHHhcCCCCCCC----CCCCCCeeeCCccc--------------CCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548           23 TGKSSLIAAAATESVPEKV----PPVHAPTRLPPDFY--------------PDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus        23 vGKSSLin~l~~~~~~~~~----~~~~~~~t~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      |+||||+.++.+.+.....    ......+.++....              ...-.+.+|||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            4599999999987653321    11111121221110              01123899999999988887778889999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc-----------hhhhhHHH----------
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS-----------LEEVMGPI----------  143 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~-----------~~~~~~~~----------  143 (507)
                      ++++|+|++++.+.+...  .+..++..  ++|+++|+||+|+........           .+....++          
T Consensus       552 ivlLVVDa~~Gi~~qT~e--~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~  627 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIE--AINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK  627 (1049)
T ss_pred             EEEEEEECcccCCHhHHH--HHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            999999999743333222  33445554  789999999999964211000           01111111          


Q ss_pred             -H------------HHhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548          144 -M------------QQFREIETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       144 -~------------~~~~~~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                       +            ..++...+++++||++|+||++|...|..
T Consensus       628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence             0            12333448999999999999999987754

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.16  E-value=1.3e-10  Score=103.90  Aligned_cols=76  Identities=22%  Similarity=0.303  Sum_probs=61.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||+++|.+|||||||++++++++.. .+.++.+...  ..+..  ....+.+||++|++++...+  ..+++.+|++++|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i~v   73 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLW--KHYYENTNGIIFV   73 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEE--CCEEEEEEECCCChhhHHHH--HHHhccCCEEEEE
Confidence            6899999999999999999999843 3445555333  23333  35788999999999998887  6788999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        74 ~D~   76 (158)
T cd00878          74 VDS   76 (158)
T ss_pred             EEC
Confidence            996

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.16  E-value=4.2e-10  Score=109.48  Aligned_cols=120  Identities=14%  Similarity=0.123  Sum_probs=74.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhH---Hhh---
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN---EEL---   80 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~---   80 (507)
                      ....++|+++|.+||||||++|+|++.....  ...+..... ........+.++.+|||||..+......   ..+   
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~-~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRP-MMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeE-EEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            3567899999999999999999999876322  121111111 1112224578999999999875432211   122   


Q ss_pred             ---ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCC
Q 010548           81 ---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGD  130 (507)
Q Consensus        81 ---~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~  130 (507)
                         ...|++|+|..++.. .+...+..+++.++....   -.++|+|.|++|....
T Consensus       114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence               268999999665432 122222225555554321   3679999999997643

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.15  E-value=1.7e-10  Score=106.17  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=62.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|.+|||||||++++.++.+.. +.||.+..  ...+..  +..++.+||++|++++...+  ..+++++|+++
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~--~~~~~~ad~ii   89 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAI--GNIKFTTFDLGGHQQARRLW--KDYFPEVNGIV   89 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEE--CCEEEEEEECCCCHHHHHHH--HHHhCCCCEEE
Confidence            4899999999999999999999987753 34444322  223333  35788899999999988888  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|+|+
T Consensus        90 ~vvD~   94 (184)
T smart00178       90 YLVDA   94 (184)
T ss_pred             EEEEC
Confidence            99995

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR00436 era GTP-binding protein Era

Probab=99.15  E-value=9.8e-11  Score=114.44  Aligned_cols=82  Identities=20%  Similarity=0.331  Sum_probs=64.7

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh-h----hc-cchhhcccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-K----IL-SNKEALASC  498 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~----~~-~~~~~~~~a  498 (507)
                      +|+++|+||||||||+|+|++.+...+++.+++|+..+..+... +..++.+|||+|..... .    +. ....+++.|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            68999999999999999999999888888888888777666655 34568999999974321 1    11 124577899


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|+|+
T Consensus        81 Dvvl~VvD~   89 (270)
T TIGR00436        81 DLILFVVDS   89 (270)
T ss_pred             CEEEEEEEC
Confidence            999999996

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2.5e-10  Score=112.79  Aligned_cols=157  Identities=17%  Similarity=0.158  Sum_probs=101.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------------C---------C----CCCCeeeC---CcccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV---------------P---------P----VHAPTRLP---PDFYPD   57 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~---------------~---------~----~~~~~t~~---~~~~~~   57 (507)
                      ..+.++++++|+..+|||||+-+|+.+.-..+.               .         .    -..+.|+.   ..+..+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            456799999999999999999999754311100               0         0    11122211   223355


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh-----HHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST-----LSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s-----~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~  132 (507)
                      .+.++|+|+||+..|...+-.-...||+.|+|+|+++.+.     ........+-..+-.+ -..+|+++||+|+.+-++
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde  162 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCH
Confidence            7789999999988887777778899999999999988731     1111111111222222 356899999999987544


Q ss_pred             ccchhhh---hHHHHHHhccc---CcEEEeCcccCCCchHH
Q 010548          133 ATSLEEV---MGPIMQQFREI---ETCVECSATTMIQVPDV  167 (507)
Q Consensus       133 ~~~~~~~---~~~~~~~~~~~---~~~~~~SA~~g~gi~~l  167 (507)
                      . ..++.   +..+.+.++..   .+|++|||..|.|+.+-
T Consensus       163 ~-rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         163 E-RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             H-HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            3 33332   33344555543   26999999999998763

>PRK15494 era GTPase Era; Provisional

Probab=99.13  E-value=1.5e-10  Score=116.43  Aligned_cols=85  Identities=15%  Similarity=0.242  Sum_probs=62.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEE-EEEcCCCeEEEEEEecCCchh-hhhhc-----cchh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN-VVDQPGGNKKTLILQEIPEEG-VKKIL-----SNKE  493 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~-~~~~~-----~~~~  493 (507)
                      .+.++|+++|+||||||||+|+|+++++..+++.+++|+.... .+..  +..++.+|||+|... +..+.     ....
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL--KDTQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe--CCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            4568999999999999999999999998876666666554433 3333  345789999999843 22211     1124


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      ++++||++++|+|+
T Consensus       128 ~l~~aDvil~VvD~  141 (339)
T PRK15494        128 SLHSADLVLLIIDS  141 (339)
T ss_pred             HhhhCCEEEEEEEC
Confidence            57899999999985

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.13  E-value=1.9e-10  Score=103.68  Aligned_cols=77  Identities=23%  Similarity=0.407  Sum_probs=58.9

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC------CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF------SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      +|+++|++|||||||++++.+...      ...+.+|.+..+.  .+..  +..++.+|||+|++.+..++  ..+++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~--~~~~~~~   74 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLW--DKYYAEC   74 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHH--HHHhCCC
Confidence            589999999999999999986432      2233445554442  3333  35788999999999998877  6789999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        75 ~~~v~vvd~   83 (167)
T cd04160          75 HAIIYVIDS   83 (167)
T ss_pred             CEEEEEEEC
Confidence            999999995

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04129 Rho2 Rho2 subfamily

Probab=99.12  E-value=2.5e-10  Score=105.28  Aligned_cols=81  Identities=21%  Similarity=0.331  Sum_probs=66.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      .||+++|++|||||||++++..+.+...+.++....+ ...+...+....+.+|||+|++.+....  ..+++.+|++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--~~~~~~a~~~ll   78 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLR--PLSYSKAHVILI   78 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccc--hhhcCCCCEEEE
Confidence            4899999999999999999998888777767665544 3455666666788999999999887655  467899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~~i   82 (187)
T cd04129          79 GFAV   82 (187)
T ss_pred             EEEC
Confidence            9985

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.12  E-value=7.5e-10  Score=109.88  Aligned_cols=106  Identities=11%  Similarity=0.080  Sum_probs=69.1

Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~  136 (507)
                      .++.+.|+||+|.......   ....||.+++|.+...++....+..    .+-    ...-++|+||+|+......   
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~----gi~----E~aDIiVVNKaDl~~~~~a---  212 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK----GIM----ELADLIVINKADGDNKTAA---  212 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh----hhh----hhhheEEeehhcccchhHH---
Confidence            4688999999997643322   5678999999987555544433221    111    2234899999998764321   


Q ss_pred             hhhhHHHHHHhc--------ccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          137 EEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       137 ~~~~~~~~~~~~--------~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ......+...+.        ...+++.+||+++.||+++++.|.+.+.
T Consensus       213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            111222222221        1137899999999999999999998754

>cd01890 LepA LepA subfamily

Probab=99.12  E-value=1.6e-10  Score=105.48  Aligned_cols=81  Identities=17%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC-------CCCCCC------CccceeEEEEEEc-----CCCeEEEEEEecCCchhhh
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF-------SENYAP------TTGEQYAVNVVDQ-----PGGNKKTLILQEIPEEGVK  486 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~-------~~~~~~------t~~~~~~~~~~~~-----~~~~~~~~i~Dt~G~~~~~  486 (507)
                      +|+++|.+|||||||+++|++...       ...+.+      +.++.+..+.+..     +++..++.+|||+|++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            589999999999999999997531       112222      1233333332222     4567788999999999998


Q ss_pred             hhccchhhcccccEEEEEEeC
Q 010548          487 KILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       487 ~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ...  ..+++.+|++++|||+
T Consensus        82 ~~~--~~~~~~ad~~i~v~D~  100 (179)
T cd01890          82 YEV--SRSLAACEGALLLVDA  100 (179)
T ss_pred             HHH--HHHHHhcCeEEEEEEC
Confidence            877  6789999999999995

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1e-09  Score=105.06  Aligned_cols=165  Identities=13%  Similarity=0.196  Sum_probs=109.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCCCCCeeeCCccc------------CCceEEEEEeCCCCccch
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATES----VPEKVPPVHAPTRLPPDFY------------PDRVPVTIIDTSSSLENK   73 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~----~~~~~~~~~~~~t~~~~~~------------~~~~~~~i~Dt~G~~~~~   73 (507)
                      +..+++.++|+-.+|||||.++|..-.    |.....+...+.|...-+.            .+...+.++|+||+   .
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH---a   81 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH---A   81 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc---H
Confidence            345999999999999999999997533    3344444555555333322            34578899999994   4


Q ss_pred             hhhHHhh---ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHh--
Q 010548           74 GKLNEEL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQF--  147 (507)
Q Consensus        74 ~~~~~~~---~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~--  147 (507)
                      ++++..+   .-.|..++|+|+..+..-+..+-.++..+-    -+..++|+||+|+..+.+. ...++....+.+.+  
T Consensus        82 sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~  157 (522)
T KOG0461|consen   82 SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES  157 (522)
T ss_pred             HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence            4555554   445888999999887555554433333332    2456888899887655222 02333334444333  


Q ss_pred             ---cccCcEEEeCcccC----CCchHHHHHHHHHHcCCCCC
Q 010548          148 ---REIETCVECSATTM----IQVPDVFYYAQKAVLHPTAP  181 (507)
Q Consensus       148 ---~~~~~~~~~SA~~g----~gi~~l~~~i~~~i~~~~~~  181 (507)
                         +...|++++||+.|    ++|.+|.+.|...+..|.+.
T Consensus       158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd  198 (522)
T KOG0461|consen  158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD  198 (522)
T ss_pred             cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence               33348999999999    89999999999988777643

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.11  E-value=2.6e-10  Score=98.01  Aligned_cols=79  Identities=22%  Similarity=0.364  Sum_probs=67.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..++|.++|..|+||||++++|.+..- ....||.+  |.++++..  +..++.+||..||...++.|  ..||..+|++
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~--~~~~L~iwDvGGq~~lr~~W--~nYfestdgl   87 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEY--KGYTLNIWDVGGQKTLRSYW--KNYFESTDGL   87 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEe--cceEEEEEEcCCcchhHHHH--HHhhhccCeE
Confidence            479999999999999999999999883 34446665  66666666  47789999999999999999  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      |+|+|.
T Consensus        88 IwvvDs   93 (185)
T KOG0073|consen   88 IWVVDS   93 (185)
T ss_pred             EEEEEC
Confidence            999995

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.11  E-value=1.9e-10  Score=119.40  Aligned_cols=84  Identities=20%  Similarity=0.254  Sum_probs=63.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEE-EEEEcCCCeEEEEEEecCCchhhhhhc------cchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV-NVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEA  494 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~  494 (507)
                      ..+||+++|+||||||||+|+|++.++..++..++++++.. ..+.++  +..+.+|||+|.+.+....      .+..+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999988766666666655443 344454  4567899999986543221      23568


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ++.||++++|||+
T Consensus       280 ~~~aD~il~V~D~  292 (442)
T TIGR00450       280 IKQADLVIYVLDA  292 (442)
T ss_pred             HhhCCEEEEEEEC
Confidence            8999999999995

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.10  E-value=1.8e-10  Score=116.16  Aligned_cols=82  Identities=21%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc---------hhhhhhccch
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE---------EGVKKILSNK  492 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------~~~~~~~~~~  492 (507)
                      ..++|+++|.||||||||+|+|++.+......+..|.+.....+.++ ++..+.+|||+|.         +.|.+   +.
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~---tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRA---TL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHH---HH
Confidence            45899999999999999999999987543333344445555666665 3457889999997         22332   34


Q ss_pred             hhcccccEEEEEEeC
Q 010548          493 EALASCDVTIFVYDR  507 (507)
Q Consensus       493 ~~~~~ad~vilv~D~  507 (507)
                      ..+++||++++|||+
T Consensus       264 e~~~~ADlil~VvD~  278 (351)
T TIGR03156       264 EEVREADLLLHVVDA  278 (351)
T ss_pred             HHHHhCCEEEEEEEC
Confidence            578899999999996

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PTZ00258 GTP-binding protein; Provisional

Probab=99.10  E-value=1e-09  Score=110.85  Aligned_cols=84  Identities=17%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC--CCeeeCCccc------------C---CceEEEEEeCCCCc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVH--APTRLPPDFY------------P---DRVPVTIIDTSSSL   70 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~--~~~t~~~~~~------------~---~~~~~~i~Dt~G~~   70 (507)
                      ....++|+|||.||||||||+|+|++...... +|.+.  +.... ..+.            .   ...++.++||||..
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~-v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR-VNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE-EecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            34578999999999999999999987663221 33211  11110 1111            0   13458999999975


Q ss_pred             cchh-------hhHHhhccCCEEEEEEeCC
Q 010548           71 ENKG-------KLNEELKRADAVVLTYACN   93 (507)
Q Consensus        71 ~~~~-------~~~~~~~~ad~il~V~D~~   93 (507)
                      ....       .....++.+|++++|+|+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            3221       2235678999999999974

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.09  E-value=9.5e-10  Score=105.48  Aligned_cols=119  Identities=21%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccch--h-h-------h
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENK--G-K-------L   76 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~--~-~-------~   76 (507)
                      ....++|+++|.+|||||||+|+|++....... ...+.++  ........+.++.+|||||..+..  . .       .
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            455799999999999999999999997642221 1111122  112223457889999999987552  1 1       1


Q ss_pred             HHhhc--cCCEEEEEEeCCCh-hhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCC
Q 010548           77 NEELK--RADAVVLTYACNQQ-STLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGD  130 (507)
Q Consensus        77 ~~~~~--~ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~  130 (507)
                      ..++.  ..|++++|..++.. .+..+.  .+++.++....   -.++++|.||+|....
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~--~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDL--PLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHH--HHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            12332  57889988766542 223322  25555555321   2679999999998654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd00879 Sar1 Sar1 subfamily

Probab=99.09  E-value=4.6e-10  Score=103.63  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||++++.++++. .+.+|.+..  ...+...  ...+.+||++|++++...+  ..+++++|+++
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~--~~~~~~ad~ii   91 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLW--KDYFPEVDGIV   91 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhccCCEEE
Confidence            479999999999999999999998874 455555432  2334443  4678899999999888777  67889999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|+|+
T Consensus        92 lV~D~   96 (190)
T cd00879          92 FLVDA   96 (190)
T ss_pred             EEEEC
Confidence            99995

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.08  E-value=1.6e-09  Score=107.76  Aligned_cols=164  Identities=16%  Similarity=0.173  Sum_probs=115.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCC--CCCC--CC---------CCCCCee---eCCcccCCceEEEEEeCCCCccchh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPEK--VP---------PVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG   74 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~--~~---------~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~   74 (507)
                      +..+|+|+-+-.-|||||+..|+.+.  |...  ..         ....++|   ....+.+++++++|+||||+-.|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            34579999999999999999999754  2111  00         1122344   3345568899999999999999999


Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc----
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI----  150 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----  150 (507)
                      ..+..+.-.|.+++++|+..+.-.+.  .+..+..-..  +.+.|+|+||+|.+..+.. ..-++...+...++..    
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~~--gL~PIVVvNKiDrp~Arp~-~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALAL--GLKPIVVINKIDRPDARPD-EVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHHc--CCCcEEEEeCCCCCCCCHH-HHHHHHHHHHHHhCCChhhC
Confidence            99999999999999999998744332  2233333333  6777899999999887654 2222333333333321    


Q ss_pred             -CcEEEeCcccCC----------CchHHHHHHHHHHcCCC
Q 010548          151 -ETCVECSATTMI----------QVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       151 -~~~~~~SA~~g~----------gi~~l~~~i~~~i~~~~  179 (507)
                       .|++..||+.|.          ++.-||+.|.+.+..|.
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence             278999999874          57889999999886665

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.08  E-value=1.6e-10  Score=101.39  Aligned_cols=66  Identities=20%  Similarity=0.286  Sum_probs=50.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc-----hhhhhhccchhhccccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE-----EGVKKILSNKEALASCD  499 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----~~~~~~~~~~~~~~~ad  499 (507)
                      ||+++|++|||||||+|+|+++.+.  +.+|.+.++       . .    .+|||+|+     +.+..+.   ..+++||
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-------~-~----~~iDt~G~~~~~~~~~~~~~---~~~~~ad   64 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-------N-D----GAIDTPGEYVENRRLYSALI---VTAADAD   64 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-------c-C----eeecCchhhhhhHHHHHHHH---HHhhcCC
Confidence            8999999999999999999988763  444443332       1 1    46999997     3455443   3589999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        65 ~vilv~d~   72 (142)
T TIGR02528        65 VIALVQSA   72 (142)
T ss_pred             EEEEEecC
Confidence            99999996

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.08  E-value=1.1e-09  Score=121.08  Aligned_cols=116  Identities=11%  Similarity=0.084  Sum_probs=80.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--C-----------CCCCeeeCC-----c--ccCCceEEEEEeCCCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP--P-----------VHAPTRLPP-----D--FYPDRVPVTIIDTSSS   69 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~--~-----------~~~~~t~~~-----~--~~~~~~~~~i~Dt~G~   69 (507)
                      .+..+|+|+|+.++|||||+.+|+...-.....  .           ...+.|+..     .  +..+++.++++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            345679999999999999999998643211100  0           000111111     1  1234788999999999


Q ss_pred             ccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548           70 LENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        70 ~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~  129 (507)
                      .++.......++.+|++|+|+|+..+.......  .+..+.+.  ++|+|+++||+|+..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~--~~~~~~~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET--VLRQALRE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHH--HHHHHHHc--CCCeEEEEECchhhc
Confidence            998888889999999999999998874443322  33333444  578899999999764

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.08  E-value=3.6e-10  Score=101.89  Aligned_cols=81  Identities=14%  Similarity=0.131  Sum_probs=61.9

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      .|+++|.+|||||||+++|.+.++...+.++.+.......+... +....+.+|||+|++.+...+  ..+++.+|++++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~--~~~~~~~d~il~   79 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMR--ARGASLTDIAIL   79 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHH--HHHHhhcCEEEE
Confidence            48999999999999999999988776544444433333333332 145678899999999888776  567899999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |+|+
T Consensus        80 v~d~   83 (168)
T cd01887          80 VVAA   83 (168)
T ss_pred             EEEC
Confidence            9995

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.08  E-value=1.6e-09  Score=100.52  Aligned_cols=106  Identities=16%  Similarity=0.107  Sum_probs=66.2

Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~  137 (507)
                      +....+++|.|..-..... ..+  +|.+|.|+|+.+..+...   .....+.     ..=++++||+|+.+....  ..
T Consensus        91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~---~~~~qi~-----~ad~~~~~k~d~~~~~~~--~~  157 (199)
T TIGR00101        91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR---KGGPGIT-----RSDLLVINKIDLAPMVGA--DL  157 (199)
T ss_pred             CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh---hhHhHhh-----hccEEEEEhhhccccccc--cH
Confidence            4567788998843222221 122  688999999988765322   1112221     223899999999853111  11


Q ss_pred             hhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +......+.+....+++++||++|+|+++++++|.+.++
T Consensus       158 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       158 GVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            223334444444458999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.07  E-value=5.7e-10  Score=98.67  Aligned_cols=82  Identities=27%  Similarity=0.466  Sum_probs=67.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|.+|+|||||++++++..+...+.++.+..+....+..++....+.+||++|+.++...+  ..+++.++.++.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i~   79 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR--RLYYRAVESSLR   79 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH--HHHHhhhhEEEE
Confidence            799999999999999999999999766676777766666556666445778899999998888776  567788888888


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      ++|.
T Consensus        80 ~~d~   83 (161)
T TIGR00231        80 VFDI   83 (161)
T ss_pred             EEEE
Confidence            8873

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.07  E-value=7.6e-10  Score=111.58  Aligned_cols=56  Identities=14%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~  482 (507)
                      .+-|.+||-|||||||.||.+.|.+...++.++|-|.. ..++.+. ..  +.+.|++|.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH-FQTi~ls-~~--v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH-FQTIFLS-PS--VCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce-eEEEEcC-CC--ceecCCCCc
Confidence            58899999999999999999999999999998888776 4455554 33  456899986

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.05  E-value=2.8e-09  Score=106.03  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=101.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC----CCC---------CCCCCCCCC---eeeCCcc--------c---CCceEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATE----SVP---------EKVPPVHAP---TRLPPDF--------Y---PDRVPVTI   63 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~----~~~---------~~~~~~~~~---~t~~~~~--------~---~~~~~~~i   63 (507)
                      ..+.|.|+|+.++|||||+|+|.+.    +..         ...+...++   +|....+        .   .-..++.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3588999999999999999999998    321         014444555   2211112        1   22478999


Q ss_pred             EeCCCCccch-------hh----------------------hHHhhc-cCCEEEEEE-eCC----ChhhHHHHHHhHHHH
Q 010548           64 IDTSSSLENK-------GK----------------------LNEELK-RADAVVLTY-ACN----QQSTLSRLSSYWLPE  108 (507)
Q Consensus        64 ~Dt~G~~~~~-------~~----------------------~~~~~~-~ad~il~V~-D~~----~~~s~~~~~~~~~~~  108 (507)
                      +||+|.....       ..                      .+..+. .+|+.|+|. |.+    .++.+......++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            9999964211       01                      235566 899999998 764    234466666679999


Q ss_pred             HHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc--CCCchHHHHHHHHH
Q 010548          109 LRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT--MIQVPDVFYYAQKA  174 (507)
Q Consensus       109 l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~--g~gi~~l~~~i~~~  174 (507)
                      +++.  ++|+++|.||+|-....    .......+..+++.  +++.+|+..  ...|..+++.+...
T Consensus       176 Lk~~--~kPfiivlN~~dp~~~e----t~~l~~~l~eky~v--pvl~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       176 LKEL--NKPFIILLNSTHPYHPE----TEALRQELEEKYDV--PVLAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             HHhc--CCCEEEEEECcCCCCch----hHHHHHHHHHHhCC--ceEEEEHHHcCHHHHHHHHHHHHhc
Confidence            9998  89999999999943221    22233455666763  667777753  34566666555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.05  E-value=7.7e-10  Score=104.69  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh------hhh----
Q 010548          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG------VKK----  487 (507)
Q Consensus       418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------~~~----  487 (507)
                      ....+.++|++||.||||||||.|.+++.+...++..+.||+..+-.+... +..++.++||+|.-.      +.-    
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHh
Confidence            445678999999999999999999999999999999999988887777776 778899999999522      111    


Q ss_pred             hccchhhcccccEEEEEEeC
Q 010548          488 ILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       488 ~~~~~~~~~~ad~vilv~D~  507 (507)
                      +......+..||++++|+|+
T Consensus       146 lq~~~~a~q~AD~vvVv~Da  165 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDA  165 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEec
Confidence            11124566789999999996

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.04  E-value=4e-10  Score=96.11  Aligned_cols=113  Identities=19%  Similarity=0.139  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      +||+++|+.|||||+|+.++....+..... +     ++.                    +......+.+.++.+++|++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~-----t~~--------------------~~~~~~~~~~s~~~~~~v~~   55 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVF-----TIG--------------------IDVYDPTSYESFDVVLQCWR   55 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCcee-----hhh--------------------hhhccccccCCCCEEEEEEE
Confidence            589999999999999999998777543221 1     111                    22223456778999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           92 CNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      .++..+++.+   |.+.+.... .+.|.++++||.|+......  .        .+...  .++++|+++|.|+.
T Consensus        56 ~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~--~--------~~~~~--~~~~~s~~~~~~~~  115 (124)
T smart00010       56 VDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQV--A--------TEEGL--EFAETSAKTPEEGE  115 (124)
T ss_pred             ccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCcC--C--------HHHHH--HHHHHhCCCcchhh
Confidence            9999998764   666655432 46889999999998543322  1        11111  35679999999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.04  E-value=9.5e-10  Score=123.18  Aligned_cols=116  Identities=11%  Similarity=0.135  Sum_probs=82.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CC-----C------CCCeeeC-----Ccc--------------cC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--PP-----V------HAPTRLP-----PDF--------------YP   56 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~--~~-----~------~~~~t~~-----~~~--------------~~   56 (507)
                      ..+..+|+|+|+.++|||||+++|+...-....  ..     +      ..+.|+.     ..+              ..
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345678999999999999999999865421110  00     0      0011111     111              11


Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~  128 (507)
                      .++.++++||||+.+|.......++.+|++|+|+|+..+-......  .+..+...  ++|+|+++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~--~~~~~~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH--HHHHHHHC--CCCEEEEEECCccc
Confidence            3678999999999999888889999999999999999875544433  44455555  79999999999987

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=4.6e-10  Score=110.95  Aligned_cols=228  Identities=14%  Similarity=0.086  Sum_probs=134.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCC------------------CCCCeeeCCcccCCceEEEEEeC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPP------------------VHAPTRLPPDFYPDRVPVTIIDT   66 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~~~------------------~~~~~t~~~~~~~~~~~~~i~Dt   66 (507)
                      ..++...+||-+|.+|||||-.+|+---....    +..                  -+.-++....++..++.+++.||
T Consensus         9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT   88 (528)
T COG4108           9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT   88 (528)
T ss_pred             HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence            34556899999999999999999873211010    000                  00111233456678899999999


Q ss_pred             CCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHH
Q 010548           67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ  146 (507)
Q Consensus        67 ~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  146 (507)
                      ||++.|..-....+..+|.+|+|+|+..+-..+.++  +.+-.+-.  ++||+-.+||.|.......    +.+.++.+.
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcrlR--~iPI~TFiNKlDR~~rdP~----ELLdEiE~~  160 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCRLR--DIPIFTFINKLDREGRDPL----ELLDEIEEE  160 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHhhc--CCceEEEeeccccccCChH----HHHHHHHHH
Confidence            999999998889999999999999999885555544  66655555  8999999999998765443    444555555


Q ss_pred             hcccCcE--EEeCc-ccCCCchHHHHHHHHHHcCC----------CCCCCccchhccc-HHHHHHHHHHHhhccCCCCCc
Q 010548          147 FREIETC--VECSA-TTMIQVPDVFYYAQKAVLHP----------TAPLFDHDEQTLK-PRCVRALKRIFIICDHDMDGA  212 (507)
Q Consensus       147 ~~~~~~~--~~~SA-~~g~gi~~l~~~i~~~i~~~----------~~~~~~~~~~~~~-~~~~~~l~~~~~~~d~~~d~~  212 (507)
                      ++--+..  +++.+ +.-.|+-.+....+......          ...+.+++..... +.....+.+-..+....    
T Consensus       161 L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a----  236 (528)
T COG4108         161 LGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGA----  236 (528)
T ss_pred             hCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhh----
Confidence            5532211  23322 33344444333211111000          0011111121111 12222222222222111    


Q ss_pred             cChhhhHHHHhH-----hcCCCCCHHHHHHHHHHHHhhccC
Q 010548          213 LNDAELNEFQVK-----CFNAPLQPAEIVGVKRVVQEKQHD  248 (507)
Q Consensus       213 l~~~el~~~~~~-----~~~~~l~~~~~~~l~~~i~~~~~~  248 (507)
                      -..-++..++..     .|++++.+-|++.+++.+-+..|+
T Consensus       237 ~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~  277 (528)
T COG4108         237 GNEFDLEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPS  277 (528)
T ss_pred             ccccCHHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCC
Confidence            111112222222     899999999999999999999986

>cd01878 HflX HflX subfamily

Probab=99.04  E-value=4.2e-10  Score=105.24  Aligned_cols=87  Identities=20%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh------hhhccchh
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV------KKILSNKE  493 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~~~~~  493 (507)
                      .++.++|+++|++|||||||+|++++..+.....+..+.......+... +...+.+|||+|....      ........
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTLE  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999987544333333334444445554 3347889999997221      11111123


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      .++.+|++++|+|+
T Consensus       117 ~~~~~d~ii~v~D~  130 (204)
T cd01878         117 EVAEADLLLHVVDA  130 (204)
T ss_pred             HHhcCCeEEEEEEC
Confidence            46789999999995

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.03  E-value=1.1e-09  Score=99.30  Aligned_cols=79  Identities=23%  Similarity=0.358  Sum_probs=62.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||++++.+..+.. +.++.+..  ...+...  +..+.+||++|++++...+  ..+++.+|++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~--~~~~~~~D~~G~~~~~~~~--~~~~~~~~~i   85 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSD--GFKLNVWDIGGQRAIRPYW--RNYFENTDCL   85 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhcCCCEE
Confidence            35899999999999999999999987653 44555532  2334443  4678899999998887776  5788999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        86 i~v~D~   91 (173)
T cd04155          86 IYVIDS   91 (173)
T ss_pred             EEEEeC
Confidence            999995

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.03  E-value=4.5e-10  Score=117.26  Aligned_cols=84  Identities=17%  Similarity=0.211  Sum_probs=62.9

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeE-EEEEEcCCCeEEEEEEecCCchhhhhh------ccchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEA  494 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~  494 (507)
                      ..+||+++|.||||||||+|+|++.++..+++.+++|++. ...+..+  +..+.+|||+|.+.+...      .++..+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3489999999999999999999998876666555555443 3344444  456889999998654321      223467


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ++.||++++|||+
T Consensus       292 ~~~aD~il~VvD~  304 (449)
T PRK05291        292 IEEADLVLLVLDA  304 (449)
T ss_pred             HHhCCEEEEEecC
Confidence            8999999999996

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.03  E-value=1.5e-09  Score=102.16  Aligned_cols=164  Identities=18%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchh----h---hH----Hh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG----K---LN----EE   79 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~----~~   79 (507)
                      ++|+++|..|+||||++|.+++...........+.+.  ........+..+.++||||..+...    .   +.    ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            5899999999999999999999875333211111111  1111235678999999999753221    1   11    12


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-C--CCcEEEEEecccCCCCCCccch-----hhhhHHHHHHhcccC
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-I--KVPIIVAGCKLDLRGDHNATSL-----EEVMGPIMQQFREIE  151 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~--~~piilv~NK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~~  151 (507)
                      ..+.|++|+|+... +-+-.+..  .++.+.+.. +  -.-++||.+..|..........     ...+..+.+..+.  
T Consensus        81 ~~g~ha~llVi~~~-r~t~~~~~--~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--  155 (212)
T PF04548_consen   81 SPGPHAFLLVIPLG-RFTEEDRE--VLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--  155 (212)
T ss_dssp             TT-ESEEEEEEETT-B-SHHHHH--HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             cCCCeEEEEEEecC-cchHHHHH--HHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--
Confidence            45689999999988 43333322  444444432 1  2568889998887665432000     1224455555654  


Q ss_pred             cEEEeCcc------cCCCchHHHHHHHHHHcCCCCC
Q 010548          152 TCVECSAT------TMIQVPDVFYYAQKAVLHPTAP  181 (507)
Q Consensus       152 ~~~~~SA~------~g~gi~~l~~~i~~~i~~~~~~  181 (507)
                      .|...+.+      ....+.+|++.|-+.+......
T Consensus       156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~  191 (212)
T PF04548_consen  156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ  191 (212)
T ss_dssp             CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence            46655555      3345777777777666544433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.02  E-value=9.8e-10  Score=100.17  Aligned_cols=80  Identities=25%  Similarity=0.395  Sum_probs=65.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|.+|+||||+++++..++... ..||.+  +.+..+..  +...+.+||..|+..++.+|  ..|++++|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~--~~~~~~~~d~gG~~~~~~~w--~~y~~~~~~   84 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKY--KGYSLTIWDLGGQESFRPLW--KSYFQNADG   84 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEE--TTEEEEEEEESSSGGGGGGG--GGGHTTESE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeee--CcEEEEEEeccccccccccc--eeeccccce
Confidence            456899999999999999999999876543 445655  33444555  45778999999999999999  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +|+|+|+
T Consensus        85 iIfVvDs   91 (175)
T PF00025_consen   85 IIFVVDS   91 (175)
T ss_dssp             EEEEEET
T ss_pred             eEEEEec
Confidence            9999995

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.02  E-value=3.3e-09  Score=105.74  Aligned_cols=94  Identities=20%  Similarity=0.118  Sum_probs=62.2

Q ss_pred             eCCCCc-cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH
Q 010548           65 DTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI  143 (507)
Q Consensus        65 Dt~G~~-~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  143 (507)
                      +.+|+. .+.......+..+|+|+-|+|+.++.+....      .+.+...++|.++|+||+|+....       ....+
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~-------~~~~W   82 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE-------VTKKW   82 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH-------HHHHH
Confidence            345543 4455677889999999999999998665432      222323356779999999997642       23344


Q ss_pred             HHHhccc--CcEEEeCcccCCCchHHHHHH
Q 010548          144 MQQFREI--ETCVECSATTMIQVPDVFYYA  171 (507)
Q Consensus       144 ~~~~~~~--~~~~~~SA~~g~gi~~l~~~i  171 (507)
                      .+.+...  ...+.+|++.+.+...+...+
T Consensus        83 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~  112 (322)
T COG1161          83 KKYFKKEEGIKPIFVSAKSRQGGKKIRKAL  112 (322)
T ss_pred             HHHHHhcCCCccEEEEeecccCccchHHHH
Confidence            4433322  146889999888877766554

>PTZ00416 elongation factor 2; Provisional

Probab=99.02  E-value=1.1e-09  Score=122.41  Aligned_cols=115  Identities=11%  Similarity=0.137  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------------CCCCeeeC-----Cccc--------CCceEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-------------VHAPTRLP-----PDFY--------PDRVPVTI   63 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-------------~~~~~t~~-----~~~~--------~~~~~~~i   63 (507)
                      .+..+|+|+|+.++|||||+++|+...-......             ...+.|+.     ..+.        ..++.+++
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            4456899999999999999999987432111000             00111111     1111        12577999


Q ss_pred             EeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548           64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        64 ~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~  128 (507)
                      +||||+.++.......++.+|++|+|+|+..+-......  ++..+...  ++|+|+++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~--~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET--VLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH--HHHHHHHc--CCCEEEEEEChhhh
Confidence            999999998888889999999999999999875544332  55556555  68999999999987

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.99  E-value=6.6e-09  Score=96.90  Aligned_cols=166  Identities=22%  Similarity=0.288  Sum_probs=95.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-------CCCCeeeCCccc--------------------------
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-------VHAPTRLPPDFY--------------------------   55 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-------~~~~~t~~~~~~--------------------------   55 (507)
                      ..+++-|+++|..|+||||++.||...-.....++       .......+..++                          
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            44567899999999999999999975332111111       000000111110                          


Q ss_pred             -----------------CCceEEEEEeCCCCccch------hhhHHhh--ccCCEEEEEEeCCCh---hhHHHHHHhHHH
Q 010548           56 -----------------PDRVPVTIIDTSSSLENK------GKLNEEL--KRADAVVLTYACNQQ---STLSRLSSYWLP  107 (507)
Q Consensus        56 -----------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~ad~il~V~D~~~~---~s~~~~~~~~~~  107 (507)
                                       .......++||||+.+-.      ..+...+  ...-++++|+|....   .+|-+-.-+--.
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence                             134668999999986421      1222222  334578888887543   344332212223


Q ss_pred             HHHhcCCCCcEEEEEecccCCCCCCcc-------chhhhhH---------------HHHHHhcccCcEEEeCcccCCCch
Q 010548          108 ELRRLEIKVPIIVAGCKLDLRGDHNAT-------SLEEVMG---------------PIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus       108 ~l~~~~~~~piilv~NK~Dl~~~~~~~-------~~~~~~~---------------~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      .+.+.  ..|.|+|.||+|+.+..-..       ...+.+.               -...+|-.....+.|||.+|.|.+
T Consensus       176 ilykt--klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  176 ILYKT--KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHHhc--cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence            34444  79999999999998752100       0011111               011112122257899999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|..+.+.+.
T Consensus       254 df~~av~~~vd  264 (366)
T KOG1532|consen  254 DFFTAVDESVD  264 (366)
T ss_pred             HHHHHHHHHHH
Confidence            99999888764

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.8e-09  Score=110.67  Aligned_cols=232  Identities=13%  Similarity=0.070  Sum_probs=159.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC---------------CCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV---------------HAPTRLP---PDFYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~---------------~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~   72 (507)
                      +..+|.++-+-.+||||+-+|.+...........               ..++|+.   ..+.|.+++++++||||+-.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            3456888889999999999999854321111110               0111211   123477899999999999999


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCc
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIET  152 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (507)
                      .-..+.+++--|++++|+|...+-.-+...  ....++++  ++|.|..+||+|.......    ..+..+..+++...-
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~t--V~rQ~~ry--~vP~i~FiNKmDRmGa~~~----~~l~~i~~kl~~~~a  189 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTET--VWRQMKRY--NVPRICFINKMDRMGASPF----RTLNQIRTKLNHKPA  189 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHH--HHHHHHhc--CCCeEEEEehhhhcCCChH----HHHHHHHhhcCCchh
Confidence            999999999999999999988774333333  55567777  8999999999998776433    455666666664334


Q ss_pred             EEEeCcccCCCchHHHHHHHHHHcCCCCCCC--------ccchhcccHHHHHHHHHHHhhccCC------CCCccChhhh
Q 010548          153 CVECSATTMIQVPDVFYYAQKAVLHPTAPLF--------DHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAEL  218 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~~~i~~~i~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el  218 (507)
                      ++.+......++..+.+.+...+........        .........+++++|.+.....|+.      ++...+.++|
T Consensus       190 ~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l  269 (721)
T KOG0465|consen  190 VVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQL  269 (721)
T ss_pred             eeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHH
Confidence            5666665555666666666554432221111        1112224456666666666666654      5667888889


Q ss_pred             HHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548          219 NEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV  250 (507)
Q Consensus       219 ~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~  250 (507)
                      ..+.++          .+++++.+.+++.+++.|-+.+|+-+
T Consensus       270 ~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~  311 (721)
T KOG0465|consen  270 KAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPS  311 (721)
T ss_pred             HHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChh
Confidence            998887          78999999999999999999999743

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.99  E-value=1.6e-09  Score=101.17  Aligned_cols=80  Identities=23%  Similarity=0.373  Sum_probs=60.1

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc-cEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC-DVTIF  503 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a-d~vil  503 (507)
                      +|+++|++|||||||+++|.++++...+.++ ............+....+.+|||+|+++++..+  ..+++.+ +++|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~--~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKL--LETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHH--HHHHhccCCEEEE
Confidence            5899999999999999999999876654333 211111111111345678999999999998776  6789998 99999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |+|+
T Consensus        79 VvD~   82 (203)
T cd04105          79 VVDS   82 (203)
T ss_pred             EEEC
Confidence            9996

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.99  E-value=9.8e-10  Score=104.70  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=59.7

Q ss_pred             EEEEEeCCCCccchhhhHH------hh--ccCCEEEEEEeCCChhhHHHHHHhH-HHH--HHhcCCCCcEEEEEecccCC
Q 010548           60 PVTIIDTSSSLENKGKLNE------EL--KRADAVVLTYACNQQSTLSRLSSYW-LPE--LRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        60 ~~~i~Dt~G~~~~~~~~~~------~~--~~ad~il~V~D~~~~~s~~~~~~~~-~~~--l~~~~~~~piilv~NK~Dl~  128 (507)
                      .+.++|||||.+....+..      .+  ...-++++++|+....+.......+ ...  .-+.  +.|.|.|.||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeeccCcc
Confidence            7899999999876554442      22  3456889999987544433222111 111  1223  79999999999998


Q ss_pred             CCCCc--------------------cchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          129 GDHNA--------------------TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       129 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .....                    ....+.+..+...++...+++++|+++++|+.+++..|.+++
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            72100                    001111222222233333789999999999999999887764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.97  E-value=2.9e-09  Score=106.40  Aligned_cols=159  Identities=19%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCC--CCCCC-CCCCCeeeCCccc-CCceEEEEEeCCCCccchhhhHHh-----hc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEKVP-PVHAPTRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEE-----LK   81 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~--~~~~~-~~~~~~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~-----~~   81 (507)
                      ..++|+|+|.+|+|||||||+|.+-..  ..+.+ +..+.++....+. ++--.+.+||.||..........|     +.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~  113 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY  113 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence            358999999999999999999976332  12222 2222222222222 333469999999975433333333     56


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC--C-----CCCccchhhhhHHH----HHHh---
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR--G-----DHNATSLEEVMGPI----MQQF---  147 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~--~-----~~~~~~~~~~~~~~----~~~~---  147 (507)
                      ..|.+|++.+  .+-+..++.  +...+++.  ++|+.+|-+|+|..  +     .+.. ..++....+    .+.+   
T Consensus       114 ~yD~fiii~s--~rf~~ndv~--La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f-~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  114 RYDFFIIISS--ERFTENDVQ--LAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTF-NEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             G-SEEEEEES--SS--HHHHH--HHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT---HHTHHHHHHHHHHHHHHCT
T ss_pred             ccCEEEEEeC--CCCchhhHH--HHHHHHHc--CCcEEEEEecccccHhhhhccCCccc-CHHHHHHHHHHHHHHHHHHc
Confidence            7899998887  443334433  77888888  89999999999951  1     1111 111112221    1111   


Q ss_pred             c-ccCcEEEeCcccC--CCchHHHHHHHHHHc
Q 010548          148 R-EIETCVECSATTM--IQVPDVFYYAQKAVL  176 (507)
Q Consensus       148 ~-~~~~~~~~SA~~g--~gi~~l~~~i~~~i~  176 (507)
                      + ...++|-+|+.+-  ..+..|.+.+.+.+.
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp  218 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP  218 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence            1 1126889998764  457778888877653

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.96  E-value=1.4e-09  Score=95.94  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc----chhhc--cc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEAL--AS  497 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----~~~~~--~~  497 (507)
                      |+|+++|.||||||||+|++++.+......|..|++.....+...  ...+.++|++|.-...+...    +..++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~--~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG--DQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET--TEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec--CceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            689999999999999999999999654444555555555555554  37788999999633221110    12333  58


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      .|++++|+|+
T Consensus        79 ~D~ii~VvDa   88 (156)
T PF02421_consen   79 PDLIIVVVDA   88 (156)
T ss_dssp             SSEEEEEEEG
T ss_pred             CCEEEEECCC
Confidence            9999999996

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.96  E-value=9.3e-09  Score=99.02  Aligned_cols=91  Identities=11%  Similarity=0.059  Sum_probs=60.2

Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEE
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV  154 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (507)
                      +.+..+.+.|-+++|+.+.+++--..+.++++-.....  ++..+||.||+||.+.... .. ++...+...++.  +.+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~-~~-~~~~~~y~~~gy--~v~  145 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEA-AV-KELLREYEDIGY--PVL  145 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHH-HH-HHHHHHHHhCCe--eEE
Confidence            34445556888888888888753333333355555555  7777888999999876443 11 234444444553  689


Q ss_pred             EeCcccCCCchHHHHHH
Q 010548          155 ECSATTMIQVPDVFYYA  171 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i  171 (507)
                      .+|++++.|++++.+.+
T Consensus       146 ~~s~~~~~~~~~l~~~l  162 (301)
T COG1162         146 FVSAKNGDGLEELAELL  162 (301)
T ss_pred             EecCcCcccHHHHHHHh
Confidence            99999999988877653

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.95  E-value=3.1e-09  Score=89.86  Aligned_cols=81  Identities=22%  Similarity=0.311  Sum_probs=55.7

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEE-EEEEcCCCeEEEEEEecCCchhh---h----hhccchhhcc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV-NVVDQPGGNKKTLILQEIPEEGV---K----KILSNKEALA  496 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~---~----~~~~~~~~~~  496 (507)
                      ||+++|.+|||||||+|++++.+....+..+.+++... ..+..  ....+.++||+|...-   .    ........++
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY--NNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE--TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee--ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            68999999999999999999976655665555554442 23333  4555679999996321   0    1111234558


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+|++++|+|+
T Consensus        79 ~~d~ii~vv~~   89 (116)
T PF01926_consen   79 KSDLIIYVVDA   89 (116)
T ss_dssp             TESEEEEEEET
T ss_pred             HCCEEEEEEEC
Confidence            89999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.94  E-value=1.4e-08  Score=100.75  Aligned_cols=108  Identities=16%  Similarity=0.088  Sum_probs=66.6

Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~  136 (507)
                      .++.+.|+||+|.....   ...+..+|.++++.+...+   +++.. ....+    .++|.++|+||+|+.........
T Consensus       125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL----MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH----hhhccEEEEEcccccchhHHHHH
Confidence            47889999999964322   2356778999988654433   33332 22222    25788999999999764221000


Q ss_pred             hhh----hHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          137 EEV----MGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       137 ~~~----~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ...    ...+.... +...++++|||+++.|+++++++|.+..
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            000    01111111 1112589999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01898 Obg Obg subfamily

Probab=98.94  E-value=2.1e-09  Score=97.17  Aligned_cols=82  Identities=20%  Similarity=0.079  Sum_probs=52.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh----hhhhcc-chhhccccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILS-NKEALASCD  499 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~-~~~~~~~ad  499 (507)
                      .|+++|++|||||||+|++.+.+......+..+....+..+... +..++.+|||+|...    ...+.. ....++.||
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            58999999999999999999876532222222223333334443 334789999999632    111210 012345699


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|+|+
T Consensus        81 ~vi~v~D~   88 (170)
T cd01898          81 LLLHVIDL   88 (170)
T ss_pred             EEEEEEec
Confidence            99999996

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.94  E-value=5.6e-09  Score=100.75  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=101.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCC------------CC-CCC-----------------CCCCeeeCC---cccC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVP------------EK-VPP-----------------VHAPTRLPP---DFYP   56 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~------------~~-~~~-----------------~~~~~t~~~---~~~~   56 (507)
                      ...++++-+|.-.-||||||-||+...-.            .. ..+                 -..++|+.+   .|..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45689999999999999999999865410            00 000                 011222211   2224


Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--c
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--T  134 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--~  134 (507)
                      .+.+|.+.||||+++|...+-.-...||++|+++|+..+-  ..... -...|...-.=..+++++||+||.+-.+.  .
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTr-RHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTR-RHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhH-HHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence            5788999999999999888888889999999999987652  22111 22222222223568999999999986443  0


Q ss_pred             chhhhhHHHHHHhccc-CcEEEeCcccCCCchH
Q 010548          135 SLEEVMGPIMQQFREI-ETCVECSATTMIQVPD  166 (507)
Q Consensus       135 ~~~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~  166 (507)
                      .+..+...++.+++.. ..++++||..|.||..
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            1223445556665532 2689999999999754

>PRK00089 era GTPase Era; Reviewed

Probab=98.93  E-value=2.6e-09  Score=105.77  Aligned_cols=84  Identities=18%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh------ccchhhcc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA  496 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~  496 (507)
                      .-.|+++|+||||||||+|++++.+...++..+.+++.....+... +..++.+|||+|.......      ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            3569999999999999999999999888887777777766655554 4478899999996432210      11135678


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+|++++|+|+
T Consensus        84 ~~D~il~vvd~   94 (292)
T PRK00089         84 DVDLVLFVVDA   94 (292)
T ss_pred             cCCEEEEEEeC
Confidence            99999999996

>PRK04213 GTP-binding protein; Provisional

Probab=98.92  E-value=3.1e-09  Score=99.13  Aligned_cols=78  Identities=17%  Similarity=0.171  Sum_probs=54.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC-----------chhhhhhcc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILS  490 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~  490 (507)
                      ..++|+++|++|||||||+|++.+..+...+.+ +.+.. ...+...    .+.+|||+|           +++++..+ 
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~-~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP-GVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI-   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC-ceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH-
Confidence            347999999999999999999999887544444 33322 2233322    578999999           56676655 


Q ss_pred             chhhcc----cccEEEEEEeC
Q 010548          491 NKEALA----SCDVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~----~ad~vilv~D~  507 (507)
                       ..+++    .++++++|+|+
T Consensus        81 -~~~~~~~~~~~~~vi~v~d~  100 (201)
T PRK04213         81 -VRYIEDNADRILAAVLVVDG  100 (201)
T ss_pred             -HHHHHhhhhhheEEEEEEeC
Confidence             34443    45788888884

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.91  E-value=4.6e-09  Score=96.11  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=55.4

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCch----------hhhhhc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKIL  489 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~  489 (507)
                      .....+|+++|++|||||||+|++++..+...+.++.++.........+ +  .+.+|||+|..          .+..+.
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            3456899999999999999999999987544433444333333333333 2  58899999942          233332


Q ss_pred             cchhhcc---cccEEEEEEeC
Q 010548          490 SNKEALA---SCDVTIFVYDR  507 (507)
Q Consensus       490 ~~~~~~~---~ad~vilv~D~  507 (507)
                        ..+++   .++++++|+|+
T Consensus        92 --~~~l~~~~~~~~ii~vvd~  110 (179)
T TIGR03598        92 --EEYLEKRENLKGVVLLMDI  110 (179)
T ss_pred             --HHHHHhChhhcEEEEEecC
Confidence              24554   35899999985

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.91  E-value=1e-08  Score=96.16  Aligned_cols=150  Identities=14%  Similarity=0.082  Sum_probs=84.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCC-CC---CCCC----CCCee----------eCC---------cc-------cCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVP-EK---VPPV----HAPTR----------LPP---------DF-------YPD   57 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~-~~---~~~~----~~~~t----------~~~---------~~-------~~~   57 (507)
                      ...|+++|..|+|||||+++++..... ..   +...    .....          ...         .+       ...
T Consensus        22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~  101 (207)
T TIGR00073        22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD  101 (207)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence            467999999999999999999864110 00   0000    00000          000         00       011


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~  137 (507)
                      +..+.+++|.|.-....   .+....+..+.|+|+.+.....      .......  ..|.++++||+|+.+.... ...
T Consensus       102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~------~~~~~~~--~~a~iiv~NK~Dl~~~~~~-~~~  169 (207)
T TIGR00073       102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP------LKYPGMF--KEADLIVINKADLAEAVGF-DVE  169 (207)
T ss_pred             CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh------hhhHhHH--hhCCEEEEEHHHccccchh-hHH
Confidence            45677888888211111   1112345566788877653211      1111112  4688999999999754222 112


Q ss_pred             hhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      . .....++.....+++++||++|.|++++++++.+.
T Consensus       170 ~-~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 K-MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             H-HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            2 22223333333479999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>smart00053 DYNc Dynamin, GTPase

Probab=98.91  E-value=1.3e-08  Score=96.70  Aligned_cols=69  Identities=17%  Similarity=0.112  Sum_probs=49.0

Q ss_pred             eEEEEEeCCCCccc-------------hhhhHHhhc-cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEec
Q 010548           59 VPVTIIDTSSSLEN-------------KGKLNEELK-RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK  124 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~-------------~~~~~~~~~-~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK  124 (507)
                      ..+.++||||....             ..+...|++ ..+++++|+|++...+-.+..+ +.+.++..  ++|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHHHc--CCcEEEEEEC
Confidence            56889999998521             123446777 5569999999876544434322 66666665  7999999999


Q ss_pred             ccCCCC
Q 010548          125 LDLRGD  130 (507)
Q Consensus       125 ~Dl~~~  130 (507)
                      +|....
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.90  E-value=3.2e-09  Score=94.51  Aligned_cols=76  Identities=18%  Similarity=0.163  Sum_probs=56.1

Q ss_pred             EecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh------ccchhhc--cccc
Q 010548          428 LFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEAL--ASCD  499 (507)
Q Consensus       428 ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~--~~ad  499 (507)
                      ++|.+|||||||++++++......+.++.+.......+.+.  +..+.+|||+|++.+...      .  ..++  +.+|
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~d   76 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVA--RDFLLGEKPD   76 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHH--HHHhcCCCCc
Confidence            58999999999999999987554444555555545556655  357889999999776532      2  3445  4899


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|+|+
T Consensus        77 ~vi~v~d~   84 (158)
T cd01879          77 LIVNVVDA   84 (158)
T ss_pred             EEEEEeeC
Confidence            99999995

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK11058 GTPase HflX; Provisional

Probab=98.90  E-value=3e-09  Score=109.84  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhh--h----hhccchhhccc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV--K----KILSNKEALAS  497 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~----~~~~~~~~~~~  497 (507)
                      .+|+++|.||||||||+|++++.++.....+..|.+.....+.++ +...+.+|||+|..+.  .    .+..+...++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999988764444444444545556565 3336789999997331  1    12223466789


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      ||++++|+|+
T Consensus       277 ADlIL~VvDa  286 (426)
T PRK11058        277 ATLLLHVVDA  286 (426)
T ss_pred             CCEEEEEEeC
Confidence            9999999996

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.89  E-value=1.5e-09  Score=92.19  Aligned_cols=84  Identities=19%  Similarity=0.316  Sum_probs=78.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      -.+||.++|++.+|||||+..|+++++.+.+..+.|..+..+.+.+.|..+.+.|||..|++++....  +..++++-++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~l--Piac~dsvaI   96 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINML--PIACKDSVAI   96 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccC--ceeecCcEEE
Confidence            45899999999999999999999999998898999999999999999999999999999999998887  7889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||.
T Consensus        97 lFmFDL  102 (205)
T KOG1673|consen   97 LFMFDL  102 (205)
T ss_pred             EEEEec
Confidence            999993

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.89  E-value=3.2e-08  Score=98.93  Aligned_cols=81  Identities=21%  Similarity=0.407  Sum_probs=52.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCC-CCee----eCCc--------ccCC---ceEEEEEeCCCCccch--
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVH-APTR----LPPD--------FYPD---RVPVTIIDTSSSLENK--   73 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~-~~~t----~~~~--------~~~~---~~~~~i~Dt~G~~~~~--   73 (507)
                      ++|+|||.||||||||+|+|++.+... ++|.+. ....    ....        +.+.   ..++.++|+||.....  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            799999999999999999999877321 122211 1110    0000        0111   1358999999975421  


Q ss_pred             --h---hhHHhhccCCEEEEEEeCC
Q 010548           74 --G---KLNEELKRADAVVLTYACN   93 (507)
Q Consensus        74 --~---~~~~~~~~ad~il~V~D~~   93 (507)
                        .   ..-..++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1   2224678999999999984

>cd01895 EngA2 EngA2 subfamily

Probab=98.89  E-value=4.9e-09  Score=94.57  Aligned_cols=83  Identities=22%  Similarity=0.261  Sum_probs=56.6

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEE-EEEEcCCCeEEEEEEecCCchhhhh---------hccch
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV-NVVDQPGGNKKTLILQEIPEEGVKK---------ILSNK  492 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~  492 (507)
                      .++|+++|.+|+|||||++++++......+..++++.... ..+..  +...+.+|||+|......         .....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY--DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE--CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            4799999999999999999999987655444444433332 22333  344578999999643211         01123


Q ss_pred             hhcccccEEEEEEeC
Q 010548          493 EALASCDVTIFVYDR  507 (507)
Q Consensus       493 ~~~~~ad~vilv~D~  507 (507)
                      ..++.+|++++|+|+
T Consensus        80 ~~~~~~d~vi~v~d~   94 (174)
T cd01895          80 KAIERADVVLLVIDA   94 (174)
T ss_pred             HHHhhcCeEEEEEeC
Confidence            466899999999995

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.87  E-value=1e-08  Score=92.66  Aligned_cols=64  Identities=25%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             eEEEEEeCCCCcc----chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecc
Q 010548           59 VPVTIIDTSSSLE----NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (507)
Q Consensus        59 ~~~~i~Dt~G~~~----~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~  125 (507)
                      ..+.|+||||...    ....+..+++.+|++|+|.+++...+-..... +.+.....  ...+++|.||+
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTTT--CSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcCC--CCeEEEEEcCC
Confidence            4578999999853    22456688899999999999998766555442 55555555  45599999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.87  E-value=1.5e-08  Score=96.67  Aligned_cols=153  Identities=21%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--h------HH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--L------NE   78 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--~------~~   78 (507)
                      ..+..-|++||-.|+|||||+++|++......  .-.+...++..... +.+..+.+.||-|....-.+  +      -.
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L-psg~~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL-PSGNFVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccC-CCCcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            34456799999999999999999996543222  22222223322222 45677999999996432221  1      13


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC-CCc----EEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVP----IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~-~~p----iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (507)
                      .+.++|+++.|.|+++|.--..... .+.-++..+- ..|    ++=|=||+|.......   .       ...    .-
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---~-------E~n----~~  318 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRET-VLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---E-------EKN----LD  318 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHH-HHHHHHhcCCCcHHHHhHHHhhccccccccccCc---c-------ccC----Cc
Confidence            4678999999999999977666554 6666666531 223    4667788886543221   1       111    14


Q ss_pred             EEeCcccCCCchHHHHHHHHHHcC
Q 010548          154 VECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      +.+||++|.|++++.+.+-..+..
T Consensus       319 v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  319 VGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccccccCccHHHHHHHHHHHhhh
Confidence            789999999999999988776643

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=5.1e-09  Score=92.35  Aligned_cols=84  Identities=18%  Similarity=0.294  Sum_probs=74.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+|++++|+.|.|||++++|.+.++|...+.+|.|.....-....+.+.+++..|||+|++++..+.  ..||-++.++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglr--dgyyI~~qcA   86 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLR--DGYYIQGQCA   86 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccc--cccEEeccee
Confidence            46899999999999999999999999999999999987765555555456899999999999999887  6888889999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        87 iimFdV   92 (216)
T KOG0096|consen   87 IIMFDV   92 (216)
T ss_pred             EEEeee
Confidence            999985

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.86  E-value=9.7e-09  Score=92.60  Aligned_cols=81  Identities=19%  Similarity=0.152  Sum_probs=50.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-----h-ccchhh-ccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----I-LSNKEA-LAS  497 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~-~~~  497 (507)
                      +|+++|.+|||||||+++|.+.++.....+..+.......+..  +..++.+|||+|......     + ...... ...
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            6999999999999999999998875332222222232222222  457899999999732110     0 000111 123


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      +|++++|||+
T Consensus        80 ~d~~l~v~d~   89 (168)
T cd01897          80 RAAVLFLFDP   89 (168)
T ss_pred             cCcEEEEEeC
Confidence            6899999996

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04163 Era Era subfamily

Probab=98.86  E-value=1.1e-08  Score=91.54  Aligned_cols=84  Identities=21%  Similarity=0.240  Sum_probs=60.3

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhc------cchhhcc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEALA  496 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~  496 (507)
                      ..+|+++|.+|+|||||+|++++.+....+..+.+++......... +...+.+|||+|........      .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999987665555555555544444333 56788899999964432211      1134678


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+|++++|+|+
T Consensus        82 ~~d~i~~v~d~   92 (168)
T cd04163          82 DVDLVLFVVDA   92 (168)
T ss_pred             hCCEEEEEEEC
Confidence            89999999985

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.86  E-value=8.8e-09  Score=91.38  Aligned_cols=82  Identities=21%  Similarity=0.292  Sum_probs=56.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccc-eeEEEEEEcCCCeEEEEEEecCCchhhhhh------ccchhhcc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE-QYAVNVVDQPGGNKKTLILQEIPEEGVKKI------LSNKEALA  496 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~  496 (507)
                      ++|+++|++|+|||||++++.+.........++++ ......+..  ...++.+|||+|...+...      ......++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999988764433333333 332223333  3457889999997554321      11235678


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      ++|++++|+|+
T Consensus        80 ~~~~~v~v~d~   90 (157)
T cd04164          80 EADLVLFVIDA   90 (157)
T ss_pred             hCCEEEEEEEC
Confidence            99999999996

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=3.2e-09  Score=93.84  Aligned_cols=79  Identities=24%  Similarity=0.349  Sum_probs=69.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ...+|+++|--|+||||++.++-.++.... .||+|  +.+..+.+.  .+++.+||..|+++++.+|  ..|+++.+++
T Consensus        16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~yk--n~~f~vWDvGGq~k~R~lW--~~Y~~~t~~l   88 (181)
T KOG0070|consen   16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYK--NISFTVWDVGGQEKLRPLW--KHYFQNTQGL   88 (181)
T ss_pred             ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEc--ceEEEEEecCCCcccccch--hhhccCCcEE
Confidence            458999999999999999999998887766 68887  556666664  7889999999999999999  7999999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      |+|+|.
T Consensus        89 IfVvDS   94 (181)
T KOG0070|consen   89 IFVVDS   94 (181)
T ss_pred             EEEEeC
Confidence            999995

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=98.85  E-value=1.7e-08  Score=88.45  Aligned_cols=143  Identities=22%  Similarity=0.297  Sum_probs=121.4

Q ss_pred             hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      ....++..+.++..|...|.+.+|.++-.+|....+ .++...+..++..+...+..      ....|+++.|+.++-..
T Consensus        12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~------~~~~idf~~Fl~~ms~~   84 (160)
T COG5126          12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA------GNETVDFPEFLTVMSVK   84 (160)
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC------CCCccCHHHHHHHHHHH
Confidence            345678889999999999999999999999999999 99999999999999888764      34689999999999888


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                      +.++-.                                         .+-|+..|+.||.|+||.++..||.++..+...
T Consensus        85 ~~~~~~-----------------------------------------~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge  123 (160)
T COG5126          85 LKRGDK-----------------------------------------EEELREAFKLFDKDHDGYISIGELRRVLKSLGE  123 (160)
T ss_pred             hccCCc-----------------------------------------HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc
Confidence            764443                                         467888899999999999999999999997543


Q ss_pred             --CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                        .+...+.+...++.+.+|.|+.+.|+.+|..
T Consensus       124 ~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~  156 (160)
T COG5126         124 RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD  156 (160)
T ss_pred             cCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence              2244556777788999999999999998864

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.85  E-value=6.4e-09  Score=95.47  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCc----------------cceeEEEEEEcCCCeEEEEEEecCCchhhhhh
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTT----------------GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~----------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~  488 (507)
                      +|+++|.+|+|||||+|++++.........+.                +.....  .........+.+|||+|...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGV--ATFEWPDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecce--EEEeeCCEEEEEEeCCCcHHHHHH
Confidence            48999999999999999999988765442211                112211  122224567889999999888776


Q ss_pred             ccchhhcccccEEEEEEeC
Q 010548          489 LSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       489 ~~~~~~~~~ad~vilv~D~  507 (507)
                      +  ..+++.+|++++|+|+
T Consensus        79 ~--~~~~~~~d~~i~v~d~   95 (189)
T cd00881          79 V--IRGLSVSDGAILVVDA   95 (189)
T ss_pred             H--HHHHHhcCEEEEEEEC
Confidence            6  6788999999999995

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.84  E-value=1.8e-09  Score=97.33  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=84.0

Q ss_pred             ecCHhHHH-----HHHHhhhhhcCCCCCCCCHHHHHhhhcc---CCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          309 ELASEAVE-----FLRGIFGLYDIDNDGAVRPAELEDLFLT---APESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       309 ~~s~~~~~-----fl~~~f~~~d~d~dg~l~~~el~~~f~~---~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      .+|+++.+     +++++|+.+|+|+.|.++.+||+.++++   .|+++.+|+.++.+++.+.+|.|.+.+|.+||.+++
T Consensus        45 ~~~~~~~~~~~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~  124 (221)
T KOG0037|consen   45 SASPSVRQPPTFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN  124 (221)
T ss_pred             CcCcccccCcccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Confidence            56677766     8999999999999999999999999995   588888999999999999999999999999999999


Q ss_pred             ---------------hcCHHHHHHHHHhhCCCC
Q 010548          381 ---------------LLDPRHSLANLIYVGYGG  398 (507)
Q Consensus       381 ---------------~~d~~~~l~~l~~lg~~~  398 (507)
                                     .+|..++..+|..+||+=
T Consensus       125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L  157 (221)
T KOG0037|consen  125 QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL  157 (221)
T ss_pred             HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC
Confidence                           999999999999999983

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.84  E-value=1.1e-08  Score=94.72  Aligned_cols=82  Identities=22%  Similarity=0.265  Sum_probs=55.2

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc----------hhhhhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE----------EGVKKILS  490 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~  490 (507)
                      +...+|+++|.+|||||||++++++.++...+.++.++...+.....   ..++.+|||+|.          +++..+. 
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~-   97 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI-   97 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH-
Confidence            45689999999999999999999998754444444443333333332   257889999994          3444443 


Q ss_pred             chhhcccc---cEEEEEEeC
Q 010548          491 NKEALASC---DVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~a---d~vilv~D~  507 (507)
                       ..+++.+   +++++|+|+
T Consensus        98 -~~~~~~~~~~~~~~~v~d~  116 (196)
T PRK00454         98 -EEYLRTRENLKGVVLLIDS  116 (196)
T ss_pred             -HHHHHhCccceEEEEEEec
Confidence             3455544   678888874

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.84  E-value=5.3e-08  Score=99.86  Aligned_cols=165  Identities=16%  Similarity=0.216  Sum_probs=111.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCeeeC-CcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTRLP-PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~t~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ..++.+.+.++|+.++|||.|++.++++.+..+. .+..+.+.+. .........+.+-|.+-. ....+.... ..||+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3456789999999999999999999998876642 3333333322 222234445566665543 222222222 78999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ++++||++++.+|.-+.. ..+.-... ...|+++|+.|+|+....+......  ..++.+++- .+.+.+|.+.... .
T Consensus       499 ~~~~YDsS~p~sf~~~a~-v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqp--de~~~~~~i-~~P~~~S~~~~~s-~  572 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAE-VYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQP--DEFCRQLGL-PPPIHISSKTLSS-N  572 (625)
T ss_pred             EEEecccCCchHHHHHHH-HHHHhhhc-cCCceEEEeeccccchhhhccCCCh--HHHHHhcCC-CCCeeeccCCCCC-c
Confidence            999999999999988775 33332222 4799999999999987643312222  667777764 4678888886333 8


Q ss_pred             HHHHHHHHHHcCCCC
Q 010548          166 DVFYYAQKAVLHPTA  180 (507)
Q Consensus       166 ~l~~~i~~~i~~~~~  180 (507)
                      ++|..|..++..|..
T Consensus       573 ~lf~kL~~~A~~Ph~  587 (625)
T KOG1707|consen  573 ELFIKLATMAQYPHI  587 (625)
T ss_pred             hHHHHHHHhhhCCCc
Confidence            999999999888873

>cd01889 SelB_euk SelB subfamily

Probab=98.83  E-value=6.3e-09  Score=96.34  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=51.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCC----CCCCC---C--CCccceeEEEEEEc----------CCCeEEEEEEecCCchh
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERP----FSENY---A--PTTGEQYAVNVVDQ----------PGGNKKTLILQEIPEEG  484 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~----~~~~~---~--~t~~~~~~~~~~~~----------~~~~~~~~i~Dt~G~~~  484 (507)
                      ++|+++|++|||||||+++|++..    +...+   .  .|....+....+..          .++...+.+|||+|+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999999731    11111   1  12222222222210          12356889999999976


Q ss_pred             hhhhccchhhcccccEEEEEEeC
Q 010548          485 VKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       485 ~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +....  ....+.+|++++|+|+
T Consensus        81 ~~~~~--~~~~~~~d~vi~VvD~  101 (192)
T cd01889          81 LIRTI--IGGAQIIDLMLLVVDA  101 (192)
T ss_pred             HHHHH--HHHHhhCCEEEEEEEC
Confidence            53222  2345678999999996

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=4.1e-08  Score=102.48  Aligned_cols=158  Identities=19%  Similarity=0.194  Sum_probs=105.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCccc-------------------CCceEEEEEeCCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFY-------------------PDRVPVTIIDTSS   68 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~-------------------~~~~~~~i~Dt~G   68 (507)
                      .+..-+||+|+-..|||-|+..+-+.+....   ...++|  +...+.                   ..---+.+|||||
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqeg---eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg  549 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEG---EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG  549 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccc---cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence            3455699999999999999999987554222   111222  222221                   1112478999999


Q ss_pred             CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC-----C-c---------
Q 010548           69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----N-A---------  133 (507)
Q Consensus        69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~-----~-~---------  133 (507)
                      ++.|.++......-||++|+|+|+..+...+.+.  -++.++..  +.|+||+.||+|....-     . +         
T Consensus       550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiE--Si~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k  625 (1064)
T KOG1144|consen  550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE--SINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK  625 (1064)
T ss_pred             chhhhhhhhccccccceEEEEeehhccCCcchhH--HHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence            9999999999999999999999998875444444  34566666  89999999999965320     0 0         


Q ss_pred             ---cchhhhhHHHHHHh----------------cccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          134 ---TSLEEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       134 ---~~~~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                         ......+..+..+|                +....++++||.+|+||.+|+.+|++.
T Consensus       626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l  685 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL  685 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence               00001111111111                122367999999999999999988865

>PRK01889 GTPase RsgA; Reviewed

Probab=98.81  E-value=5.4e-08  Score=98.52  Aligned_cols=83  Identities=17%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ..++|.+++|+++..+-....++. ++..+...  ++|.+||.||+||.+.     ..+....+.. +..-.+++.+||+
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr-~L~~a~~~--~i~piIVLNK~DL~~~-----~~~~~~~~~~-~~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIER-YLALAWES--GAEPVIVLTKADLCED-----AEEKIAEVEA-LAPGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHH-HHHHHHHc--CCCEEEEEEChhcCCC-----HHHHHHHHHH-hCCCCcEEEEECC
Confidence            578899999999975555555553 66666666  7888999999999753     1111222222 2222378999999


Q ss_pred             cCCCchHHHHHH
Q 010548          160 TMIQVPDVFYYA  171 (507)
Q Consensus       160 ~g~gi~~l~~~i  171 (507)
                      ++.|+++|..++
T Consensus       181 ~g~gl~~L~~~L  192 (356)
T PRK01889        181 DGEGLDVLAAWL  192 (356)
T ss_pred             CCccHHHHHHHh
Confidence            999988877654

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.6e-08  Score=99.11  Aligned_cols=233  Identities=12%  Similarity=0.104  Sum_probs=150.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCC------------CCCee---eCCcccCCceEEEEEeCCCCc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPV------------HAPTR---LPPDFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~------------~~~~t---~~~~~~~~~~~~~i~Dt~G~~   70 (507)
                      ..+..+|.|+..-.+||||...|++.-.....   ....            ..++|   -.+.++|++++++++||||+-
T Consensus        34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv  113 (753)
T KOG0464|consen   34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV  113 (753)
T ss_pred             hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence            33456799999999999999999875321111   1111            11222   234677999999999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      .|.-..+..++--|+++.|||.+.+-..+.+.- |. ...+.  ++|-+..+||+|....    ..+.....+.++++..
T Consensus       114 df~leverclrvldgavav~dasagve~qtltv-wr-qadk~--~ip~~~finkmdk~~a----nfe~avdsi~ekl~ak  185 (753)
T KOG0464|consen  114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WR-QADKF--KIPAHCFINKMDKLAA----NFENAVDSIEEKLGAK  185 (753)
T ss_pred             eEEEEHHHHHHHhcCeEEEEeccCCcccceeee-eh-hcccc--CCchhhhhhhhhhhhh----hhhhHHHHHHHHhCCc
Confidence            999999999999999999999998755555542 43 33334  7999999999998764    3455666666777653


Q ss_pred             CcEEEeCcccCCCchH-HHHHHHHH-HcC----------CCCCCCc---cchhcccHHHHHHHHHHHhhccCC-------
Q 010548          151 ETCVECSATTMIQVPD-VFYYAQKA-VLH----------PTAPLFD---HDEQTLKPRCVRALKRIFIICDHD-------  208 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~-l~~~i~~~-i~~----------~~~~~~~---~~~~~~~~~~~~~l~~~~~~~d~~-------  208 (507)
                      .-.+.+.--...|+.. +++.+.+. ++.          ..+|+..   ++......++..+|-......|.+       
T Consensus       186 ~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ld  265 (753)
T KOG0464|consen  186 ALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLD  265 (753)
T ss_pred             eEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            2223333334444422 23333322 211          1123222   121223345555555554444433       


Q ss_pred             ----CCCccChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548          209 ----MDGALNDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (507)
Q Consensus       209 ----~d~~l~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~  249 (507)
                          +-..+.++++....++          .+++++.+.+++.+++.+.-.+|+-
T Consensus       266 ef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpsp  320 (753)
T KOG0464|consen  266 EFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSP  320 (753)
T ss_pred             HhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCCh
Confidence                2345777777766654          6889999999999999999999974

>cd01894 EngA1 EngA1 subfamily

Probab=98.80  E-value=8.4e-09  Score=91.56  Aligned_cols=79  Identities=23%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             EEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-----hc-cchhhccccc
Q 010548          427 LLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----IL-SNKEALASCD  499 (507)
Q Consensus       427 ~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~~ad  499 (507)
                      +++|.+|||||||++++++......+. +..+.+........  ....+.+|||+|...+..     +. .....++++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999876432222 22222232333333  346788999999877543     11 1135678899


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|+|+
T Consensus        79 ~ii~v~d~   86 (157)
T cd01894          79 VILFVVDG   86 (157)
T ss_pred             EEEEEEec
Confidence            99999985

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.79  E-value=4e-08  Score=90.53  Aligned_cols=151  Identities=13%  Similarity=0.191  Sum_probs=100.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeeCCcccCCceEEEEEeCCCCccchhh-------hHHhhcc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFYPDRVPVTIIDTSSSLENKGK-------LNEELKR   82 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~   82 (507)
                      .-+|+++|-|.||||||+..++....  ........  +.++..+..++..+++.|.||..+..++       .-...+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            46999999999999999999987652  21111111  1266677778889999999997654332       2245688


Q ss_pred             CCEEEEEEeCCChhhHHHHHHh----------------------------------------------------------
Q 010548           83 ADAVVLTYACNQQSTLSRLSSY----------------------------------------------------------  104 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~----------------------------------------------------------  104 (507)
                      ||+|++|.|++..+.-..+.++                                                          
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            9999999999876443322221                                                          


Q ss_pred             --------HHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          105 --------WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       105 --------~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                              +++.+.....-+|++.|-||+|...       .++...++.+-    .-+-+|+..+-|++.+++.|...+
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs-------~eevdrlAr~P----nsvViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS-------IEEVDRLARQP----NSVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccceec-------HHHHHHHhcCC----CcEEEEeccccCHHHHHHHHHHHh
Confidence                    1111111111267888999998643       23344444333    357899999999999999998876

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.79  E-value=8.5e-09  Score=96.76  Aligned_cols=80  Identities=19%  Similarity=0.145  Sum_probs=55.7

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCC------------------------------CCccceeEEEEEEcCCCeEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYA------------------------------PTTGEQYAVNVVDQPGGNKKT  474 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~------------------------------~t~~~~~~~~~~~~~~~~~~~  474 (507)
                      +|+++|.+|+|||||+++++.....+...                              ..+.+...... ....+..++
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~-~~~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYR-YFSTPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeeccee-EEecCCceE
Confidence            58999999999999999998755443310                              02222222222 222245678


Q ss_pred             EEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          475 LILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       475 ~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .+|||+|.++|....  ...++.+|++++|+|+
T Consensus        80 ~liDTpG~~~~~~~~--~~~~~~ad~~llVvD~  110 (208)
T cd04166          80 IIADTPGHEQYTRNM--VTGASTADLAILLVDA  110 (208)
T ss_pred             EEEECCcHHHHHHHH--HHhhhhCCEEEEEEEC
Confidence            899999998876544  4578999999999996

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.78  E-value=1.1e-08  Score=95.97  Aligned_cols=160  Identities=11%  Similarity=0.005  Sum_probs=100.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cchhhhHHh
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLNEE   79 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~   79 (507)
                      .+..+++++|.+|||||||+|.++..+.........++.|..+....-+..+.++|.||..          ++......|
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y  213 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY  213 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence            4568999999999999999999998764333333345556555555567789999999932          233344455


Q ss_pred             hccCC---EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC--ccchhhhhH----HHHHH-hcc
Q 010548           80 LKRAD---AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN--ATSLEEVMG----PIMQQ-FRE  149 (507)
Q Consensus        80 ~~~ad---~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~----~~~~~-~~~  149 (507)
                      +.+-+   .+.+.+|++-+...  .+...+.++.+.  ++|..+|.||||......  .......+.    .+..+ +..
T Consensus       214 ~leR~nLv~~FLLvd~sv~i~~--~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~  289 (320)
T KOG2486|consen  214 LLERENLVRVFLLVDASVPIQP--TDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLV  289 (320)
T ss_pred             HHhhhhhheeeeeeeccCCCCC--CChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccceec
Confidence            53332   35556676665322  222356666666  899999999999865422  000001111    11111 111


Q ss_pred             cCcEEEeCcccCCCchHHHHHHHH
Q 010548          150 IETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       150 ~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                      ..|++.+|+.++.|+++|+-.+..
T Consensus       290 ~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  290 DLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cCCceeeecccccCceeeeeehhh
Confidence            226788999999999998766654

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.77  E-value=2.1e-08  Score=87.52  Aligned_cols=77  Identities=26%  Similarity=0.415  Sum_probs=61.1

Q ss_pred             EecCCCCchHHHHHHHhcCCC-CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEe
Q 010548          428 LFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD  506 (507)
Q Consensus       428 ivG~~~vGKSsll~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D  506 (507)
                      ++|++|+|||||++++++... ...+.++. .+.........+....+.+||++|...+....  ...++.+|++++|+|
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--~~~~~~~~~~i~v~d   77 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR--RLYYRGADGIILVYD   77 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHH--HHHhcCCCEEEEEEE
Confidence            589999999999999999887 44555555 55555555555567788999999998877655  568899999999998


Q ss_pred             C
Q 010548          507 R  507 (507)
Q Consensus       507 ~  507 (507)
                      +
T Consensus        78 ~   78 (157)
T cd00882          78 V   78 (157)
T ss_pred             C
Confidence            5

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.76  E-value=3.8e-08  Score=105.47  Aligned_cols=83  Identities=16%  Similarity=0.196  Sum_probs=64.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +..+|+++|.+|+|||||+++|.+.++...+.+..|.......+.+. +..++.+|||+|++.|..++  ...++.+|++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~r--~rga~~aDia  162 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSMR--ARGAKVTDIV  162 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhHH--HhhhccCCEE
Confidence            45689999999999999999999988766554444434333344444 23378899999999999887  5678999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus       163 ILVVda  168 (587)
T TIGR00487       163 VLVVAA  168 (587)
T ss_pred             EEEEEC
Confidence            999985

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=98.76  E-value=2.9e-08  Score=83.20  Aligned_cols=81  Identities=25%  Similarity=0.371  Sum_probs=68.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +..+|+.++|-.|+|||||++++...+.... .||.|  |.++.+... +..++.+||..|++..+..|  ..||.+.|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyW--sNYyenvd~   88 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYW--SNYYENVDG   88 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhc-cccCC--cceEEEeec-CcEEEEEEecCCccccchhh--hhhhhccce
Confidence            4569999999999999999999988775332 24444  777788777 77889999999999999999  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +|+|+|.
T Consensus        89 lIyVIDS   95 (185)
T KOG0074|consen   89 LIYVIDS   95 (185)
T ss_pred             EEEEEeC
Confidence            9999994

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.75  E-value=5.2e-09  Score=88.25  Aligned_cols=79  Identities=20%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+.+.++|-.++|||||+|....+++...--||.|.+..    .+..+.+.+.+||..|+++|++.|  ..|+|++++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmW--erycR~v~aiv   93 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMW--ERYCRGVSAIV   93 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHH--HHHhhcCcEEE
Confidence            378999999999999999999998888777788874432    334467888999999999999999  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|+|+
T Consensus        94 Y~VDa   98 (186)
T KOG0075|consen   94 YVVDA   98 (186)
T ss_pred             EEeec
Confidence            99996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	507
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-08
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-07
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-07
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-06
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-05
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		8e-05
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-05
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-04
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-04
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-04
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-04
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-04
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-04
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-04
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-04
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-04
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-04
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-04
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-04
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-04
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-04
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-04
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-04
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-04
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-04
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-04
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-04
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-04
1mh1_A	186	Small G-Protein Length = 186		3e-04
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-04
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-04
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-04
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-04
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-04
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		5e-04
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-04
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		7e-04
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		8e-04
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		8e-04
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		8e-04
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		8e-04
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		8e-04

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   +S  W+PEL+     VPI++ G KLDLR D         A
Sbjct: 78  RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGA 137
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
             +  V G  +++       +ECS+ +   V  VF  A + VL P
Sbjct: 138 VPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 83  ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----NATSLE 137
           AD  VL ++   +++   +   W+PELRR    VPI++ G KLDLR D      +   + 
Sbjct: 81  ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT 140
Query: 138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
              G  +++       +ECS+ T   V  VF  A K VL P
Sbjct: 141 STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   ++  W+PELR     VPII+ G KLDLR D         A
Sbjct: 76  RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
             +    G  +++       +ECS+ T   V  VF  A K VL P
Sbjct: 136 VPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 81  KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
           + AD  +L ++   +++   +   WLPEL+     +PI++ G KLDLR D         A
Sbjct: 76  RGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
            S+    G  +++       +ECS+ T   V  VF  A +  L P
Sbjct: 136 ASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
           RL P  YP  V  T       + ++GK   +   AD  ++ ++    ++   + + W PE
Sbjct: 68  RLRPLSYPQTVGETY---GKDITSRGK---DKPIADVFLICFSLVSPASFENVRAKWYPE 121
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSAT 159
           +R      PII+ G KLDLR D +      E+ + PI     +   +EI     +ECSA 
Sbjct: 122 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 160 TMIQVPDVFYYAQKAVLHP 178
           T   +  VF  A +AVL P
Sbjct: 182 TQRGLKTVFDEAIRAVLCP 200

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 80  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 139
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL P
Sbjct: 140 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL P
Sbjct: 134 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 82  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 141
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 142 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D H A  L ++   
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQE 137
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                 G  M         +ECSA T   V +VF  A +A L 
Sbjct: 138 PVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 81  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 76  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVL 176
            + P  ++ R++   +      ECSA T   V +VF  A +A L
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 80  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 78  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 16  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +     A   +E
Sbjct: 79  DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
            + P  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 81  QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI++   +ECSA T   +  VF  A +AVL
Sbjct: 141 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 76  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 78  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 137
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 138 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 52/137 (37%), Gaps = 34/137 (24%)
Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
           RL P FYPD                         A  ++L +     ++   + + W PE
Sbjct: 97  RLRPLFYPD-------------------------ASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS------LEEVM---GPIMQQFREIETCVECSAT 159
           +     KVPIIV GCK DLR D +  +      LE V    G  M +       +ECSA 
Sbjct: 132 VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
Query: 160 TMIQVPDVFYYAQKAVL 176
               V  VF  A +  L
Sbjct: 192 LHDNVHAVFQEAAEVAL 208

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 74  QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
           + PI     +   +EI     +ECSA T   +  VF  A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 43  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 100
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 41  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 160
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25  KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
           K+ L+ +  T + P E +P V        +   D  PV + +  ++ LE+  +L      
Sbjct: 19  KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 76
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 77  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 136
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 137 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 20  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 80  DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-MG 141
           D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D H    L ++   
Sbjct: 98  DVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157
Query: 142 PIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
           P+  ++ R++   +      ECSA T   V +VF  A +A L 
Sbjct: 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
           D +++ ++ +   +L  +   W+PE++     VPII+   K DLR D H  T L  +   
Sbjct: 98  DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                 G  M    +    +ECSA T   V +VF  A +A L 
Sbjct: 158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25  KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
           K++L+   A +  PE  VP V        +    R+ +++ DTS S             +
Sbjct: 36  KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 95
Query: 84  DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
           DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D         H  T
Sbjct: 96  DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 155
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
            +    G  M +     T +ECSA  +   V D+F+ A  A ++
Sbjct: 156 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 199

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PI++ G KLDLR D +      ++ 
Sbjct: 75  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   REI +   +ECSA T   +  VF  A +AVL
Sbjct: 135 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D +      E+ 
Sbjct: 81  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   +EI     +ECSA T   +  VF  A +AVL
Sbjct: 141 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82  RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
           + D  ++ ++    ++   + + W PE+R      PI++ G KLDLR D +      ++ 
Sbjct: 75  QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + PI     +   REI +   +ECSA T   +  VF  A +AVL
Sbjct: 135 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-24
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-22
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-22
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	9e-04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-22
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-22
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-22
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-21
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-21
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	6e-21
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-20
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-20
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	9e-20
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-04
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-04
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-06
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-04
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-06
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-06
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-06
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-05
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-05
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-04
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	5e-05
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-04
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-04
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-04
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-04
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-04
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	4e-04

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 98.2 bits (245), Expect = 4e-24
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 33/195 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           GS S+SR  ++ V VGD   GK+ L+ +  +       P  + PT       +   +   
Sbjct: 1   GSMSASRF-IKCVTVGDGAVGKTCLLISYTSN----TFPTDYVPTVFDNFSANVVVNGAT 55

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
           V   + DT+          E+  R        AD  +L ++   +++   +S  W+PEL+
Sbjct: 56  VNLGLWDTAGQ--------EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107

Query: 111 RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM----QQF-REIETC--VECSATTMIQ 163
                VPI++ G KLDLR D           PI     ++  + I     +ECS+ +   
Sbjct: 108 HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167

Query: 164 VPDVFYYAQKAVLHP 178
           V  VF  A + VL P
Sbjct: 168 VKGVFDAAIRVVLQP 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 94.8 bits (236), Expect = 1e-22
 Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 2   PGGSGSSSRTG------VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY 55
           PG  G   R G      V+ V+VGD   GK+SL+ +  T   P      + PT    D +
Sbjct: 4   PGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPT----EYIPTAF--DNF 57

Query: 56  PDRVPV-------TIIDTSSSLENKGKLNEEL-KRADAVVLTYACNQQSTLSRLSSYWLP 107
              V V        + DT+   +   KL        D  +L ++    S+   +S  W+P
Sbjct: 58  SAVVSVDGRPVRLQLCDTAGQ-DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVP 116

Query: 108 ELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQF-----REI--ETCVECSA 158
           E+R    K PII+ G + DLR D       +     P+ ++       EI   + +ECSA
Sbjct: 117 EIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176

Query: 159 TTMIQVPDVFYYAQKAVLHP 178
            T   + +VF  A  A +  
Sbjct: 177 LTQKNLKEVFDAAIVAGIQY 196

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 94.7 bits (236), Expect = 2e-22
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 34/195 (17%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           GS  S    ++ V VGD   GK+ ++    +   P      + PT       +   D   
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPT----DYIPTVFDNFSANVAVDGQI 56

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
           V   + DT+          E+  R        AD  VL ++   +++   +   W+PELR
Sbjct: 57  VNLGLWDTAGQ--------EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR 108

Query: 111 RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-----REIETC--VECSATTMIQ 163
           R    VPI++ G KLDLR D     L +    I         ++I     +ECS+ T   
Sbjct: 109 RFAPNVPIVLVGTKLDLRDDKG--YLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166

Query: 164 VPDVFYYAQKAVLHP 178
           V  VF  A K VL P
Sbjct: 167 VKAVFDTAIKVVLQP 181

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
           +     +C+  G    GK+ +L  +    F  +Y PT  + ++ NV 
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA 51

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 92.9 bits (231), Expect = 3e-22
 Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 22/186 (11%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV------- 61
           S   ++ VVVGD   GK+ L+ +  T + P +  P         D Y   V V       
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF------DNYSANVMVDGKPVNL 55

Query: 62  TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
            + DT+   +          + D  ++ ++    ++   + + W PE+R      PII+ 
Sbjct: 56  GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115

Query: 122 GCKLDLRGDHNATSLEEVMG--PIMQQ-----FREI--ETCVECSATTMIQVPDVFYYAQ 172
           G KLDLR D +     +     PI         +EI     +ECSA T   +  VF  A 
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

Query: 173 KAVLHP 178
           +AVL P
Sbjct: 176 RAVLCP 181

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 92.9 bits (231), Expect = 4e-22
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 4   GSGSSSRTG------VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYP 56
           G+G SS         ++ VVVGD   GK+ L+ + A ++ PE+ VP V     +      
Sbjct: 4   GAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGG 63

Query: 57  DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV 116
            +  + + DT+   +            D  ++ ++    ++   +   W+PEL+     V
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNV 123

Query: 117 PIIVAGCKLDLRGDHNATSLEEVMG--PIMQQ-----FREI--ETCVECSATTMIQVPDV 167
           P ++ G ++DLR D    +    M   PI  +      +EI     VECSA T   +  V
Sbjct: 124 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183

Query: 168 FYYAQKAVLHP 178
           F  A  A+L P
Sbjct: 184 FDEAIIAILTP 194

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 92.9 bits (231), Expect = 7e-22
 Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 38/202 (18%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
           M G         V+VV+VGD G GK+SL+   A        P  + PT    + Y   + 
Sbjct: 23  MAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADG----AFPESYTPTVF--ERYMVNLQ 76

Query: 61  V-------TIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
           V        I DT+          ++  R        A  ++L +     ++   + + W
Sbjct: 77  VKGKPVHLHIWDTAGQ--------DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRW 128

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQ-----FREIETC--VEC 156
            PE+     KVPIIV GCK DLR D +  +     G  P+         R +     +EC
Sbjct: 129 YPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188

Query: 157 SATTMIQVPDVFYYAQKAVLHP 178
           SA     V  VF  A +  L  
Sbjct: 189 SARLHDNVHAVFQEAAEVALSS 210

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
           S+  ++        + +L G    GK++LL  F +  F E+Y PT  E+Y VN+
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL 75

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 90.1 bits (224), Expect = 4e-21
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 19/186 (10%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-----RLPPDFYPDRVP 60
           GS+     ++VVVGD   GK++L+   A +      P  + PT         +    R+ 
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKD----CFPENYVPTVFENYTASFEIDTQRIE 56

Query: 61  VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIV 120
           +++ DTS S             +DAV++ +  ++  TL  +   W  E++       +++
Sbjct: 57  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116

Query: 121 AGCKLDLRGDHNATSLEEVMG--PIMQQF-----REI--ETCVECSA-TTMIQVPDVFYY 170
            GCK DLR D +           P+         ++I   T +ECSA  +   V D+F+ 
Sbjct: 117 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

Query: 171 AQKAVL 176
           A  A +
Sbjct: 177 ATLACV 182

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 90.2 bits (224), Expect = 4e-21
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 27/195 (13%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRV 59
           +P GS  ++    ++V+VGD   GK+ L+   + +  PE  VP V        +    +V
Sbjct: 15  VPRGSHMAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQV 73

Query: 60  PVTIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRR 111
            + + DT+          E+  R         D +++ ++ +   +L  +   W PE++ 
Sbjct: 74  ELALWDTAGQ--------EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125

Query: 112 LEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVECSATTMI 162
               VPII+ G K DLR D +          E V     +     I     +ECSA T  
Sbjct: 126 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185

Query: 163 QVPDVFYYAQKAVLH 177
            V +VF  A +A L 
Sbjct: 186 GVREVFEMATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 89.8 bits (223), Expect = 6e-21
 Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 38/200 (19%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
               +       ++ VVVGD   GK+ L+ +  T       P  + PT    D Y   V 
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN----AFPGEYIPTVF--DNYSANVM 72

Query: 61  V-------TIIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
           V        + DT+          E+  R         D  ++ ++    ++   + + W
Sbjct: 73  VDGKPVNLGLWDTAGQ--------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVEC 156
            PE+R      PII+ G KLDLR D +         L  +  P      +EI     +EC
Sbjct: 125 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184

Query: 157 SATTMIQVPDVFYYAQKAVL 176
           SA T   +  VF  A +AVL
Sbjct: 185 SALTQRGLKTVFDEAIRAVL 204

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 410 RSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
           R    +    +    +C++ G    GK+ LL S+    F   Y PT  + Y+ NV
Sbjct: 17  RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV 71

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 88.3 bits (219), Expect = 3e-20
 Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 34/195 (17%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVPVT 62
              S    ++VVVGD   GK+ L+   + +    + P V+ PT       D   D   V 
Sbjct: 19  YFQSMIRKKLVVVGDGACGKTCLLIVFSKD----EFPEVYVPTVFENYVADIEVDGKQVE 74

Query: 63  --IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELRRL 112
             + DT+          E+  R         D +++ ++ +   +L  +   W+PE++  
Sbjct: 75  LALWDTAGQ--------EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126

Query: 113 EIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQ-----FREI--ETCVECSATTMIQ 163
              VPII+   K DLR D +  +        P+           I     +ECSA T   
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186

Query: 164 VPDVFYYAQKAVLHP 178
           V +VF  A +A L  
Sbjct: 187 VREVFETATRAALQK 201

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 87.9 bits (218), Expect = 3e-20
 Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 37/201 (18%)

Query: 1   MPGGSGSSSRTGVR--VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFY 55
           +P GS       V+  +VVVGD   GK++L+   A +      P  + PT        F 
Sbjct: 15  VPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD----CFPENYVPTVFENYTASFE 70

Query: 56  PDRVPVT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYW 105
            D   +   + DTS S                     +DAV++ +  ++  TL  +   W
Sbjct: 71  IDTQRIELSLWDTSGS--------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVEC 156
             E++       +++ GCK DLR D +            V         ++I   T +EC
Sbjct: 123 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182

Query: 157 SA-TTMIQVPDVFYYAQKAVL 176
           SA  +   V D+F+ A  A +
Sbjct: 183 SALQSENSVRDIFHVATLACV 203

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 86.2 bits (214), Expect = 9e-20
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT---RLPPDFYPDRVP 60
           G   + +  +++VVVGD   GK+ L+ A +   +P      + PT               
Sbjct: 15  GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPT----AYVPTVFENFSHVMKYKNEE 70

Query: 61  VT--IIDTSSSLENKGKLNEELKR--------ADAVVLTYACNQQSTLSRLSSYWLPELR 110
               + DT+          EE  R        +D V+L +A N +++   +S+ W PE++
Sbjct: 71  FILHLWDTAGQ--------EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122

Query: 111 RLEIKVPIIVAGCKLDLRGDHNAT-SLEEVMGPIMQQFREI--ETCVECSATTMIQVPDV 167
                   ++ G K+DLR D +   + +E         +++     +E S+   I + +V
Sbjct: 123 HYIDTAKTVLVGLKVDLRKDGSDDVTKQE----GDDLCQKLGCVAYIEASSVAKIGLNEV 178

Query: 168 FYYAQKAVLHP 178
           F  +   +   
Sbjct: 179 FEKSVDCIFSN 189

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 403 ALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAV 462
           A+      +    K +  +   + ++ G    GK+ LL +F +      Y PT  E ++ 
Sbjct: 3   AMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62

Query: 463 NV 464
            +
Sbjct: 63  VM 64

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 85.3 bits (211), Expect = 3e-19
 Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 11/190 (5%)

Query: 3   GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPV 61
           G +        ++V+VGD   GK++++   A +  P   VP V        +    RV +
Sbjct: 18  GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVEL 77

Query: 62  TIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
           ++ DTS S             +DAV+L +  ++  T+      W  E+        +++ 
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137

Query: 122 GCKLDLRGDHN------ATSLEEVMGPIMQQF-REI--ETCVECSA-TTMIQVPDVFYYA 171
           GCK DLR D +            +         +++  E  +E SA T+   +  +F  A
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197

Query: 172 QKAVLHPTAP 181
               L+  +P
Sbjct: 198 SMLCLNKPSP 207

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 72.7 bits (178), Expect = 3e-14
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 10/188 (5%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDR-V 59
                  +++  ++ VVVGD   GK+ L+ +  T + P +  P              + V
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 203

Query: 60  PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
            + + DT+   +          + D  ++ ++    ++   + + W PE+R      PII
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII 263

Query: 120 VAGCKLDLRGDHNATS--LEEVMGPIMQQF-----REIETC--VECSATTMIQVPDVFYY 170
           + G KLDLR D +      E+ + PI         +EI     +ECSA T   +  VF  
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

Query: 171 AQKAVLHP 178
           A +AVL P
Sbjct: 324 AIRAVLCP 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 65/453 (14%), Positives = 110/453 (24%), Gaps = 139/453 (30%)

Query: 10  RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTI---IDT 66
           R    V++ G  G+GK+ +          +              F+     + +      
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-------FW-----LNLKNCNSP 195

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-------------- 112
            + LE   KL  ++        T   +  S +         ELRRL              
Sbjct: 196 ETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 113 EIKVPIIVA----GCKLDL---RGDHNATSL------EEVMGPIMQQFREIET------C 153
            ++           CK+ L   R       L         +          E        
Sbjct: 252 NVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 154 VECSATTMIQVPDVFYYAQKAVLHPTA----PLFDHDE----QTLKPRCVRALKRIFIIC 205
           ++C    +   P      +    +P           D        K      L  I    
Sbjct: 311 LDCRPQDL---P-----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---- 358

Query: 206 DHDMDGALNDAELNEFQVKCF----------NAPLQ-------------PAEIVG--VKR 240
              ++ +LN  E  E++ K F          + P                  +V    K 
Sbjct: 359 ---IESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 241 VVQEKQ--------HDGVNDLGLTLSGFLFLHALFIEKGRLETTW-----AVLRKFGY-- 285
            + EKQ             +L + L     LH   ++   +  T+            Y  
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 286 -------------GDDLELRDDFLP---VPTKLSPDQSVELASEAVEFLRGIFGLYD--- 326
                              R  FL    +  K+  D +   AS ++         Y    
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 327 IDNDGAVRPAELEDL--FLTAPESPWDEAPYKD 357
            DND       +  +  FL   E     + Y D
Sbjct: 535 CDNDPK-YERLVNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 42/176 (23%)

Query: 282 KFGYGDDLE-LRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDN-----DGAVRP 335
           ++ Y D L    D F+        +   +   +  +  + I    +ID+     D     
Sbjct: 15  QYQYKDILSVFEDAFVD-------NFDCK---DVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 336 AELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFV-SKWALMTLLDPRHSLANLIYV 394
             L    L+  E        +   E     N     F+ S         P  S+   +Y+
Sbjct: 65  LRLFWTLLSKQEEM-----VQKFVEEVLRINY---KFLMSPIKTEQR-QP--SMMTRMYI 113

Query: 395 GY------GGDPAAALRVTRKRSVDR-----KKQQTERNVFRCLLFGPQNAGKSAL 439
                        A   V+R +   +      + +  +NV    + G   +GK+ +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGKTWV 166

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 24/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V++VG+ G GKS+L                H P   P D Y      D+  VT  + D 
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSA----HEPE-NPEDTYERRIMVDKEEVTLVVYDI 79

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +  G L +  L+  DA ++ ++   + + S++    L  LR       +P+I+ G 
Sbjct: 80  WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGN 138

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       SLEE      +      +C  +E SA       ++F 
Sbjct: 139 KSDLA-RSREVSLEEG-----RHLAGTLSCKHIETSAALHHNTRELFE 180

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE 458
           +F+ +L G    GKS L  +F        + P   E
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE 58

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 37/172 (21%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V +VG+  +GKS+L+    T +  ++     +P       +      D       I D 
Sbjct: 22  KVGIVGNLSSGKSALVHRYLTGTYVQE----ESPEG---GRFKKEIVVDGQSYLLLIRDE 74

Query: 67  SSSLENKGKLNEE---LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVA 121
                       E       DAVV  ++   + +   + + +   L       +VP+++ 
Sbjct: 75  GGP--------PELQFAAWVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLV 125

Query: 122 GCKLDLRGDHN-ATSLEEVMGPIMQQF-REIETC--VECSATTMIQVPDVFY 169
           G +  +   +              ++   +++ C   E  AT  + V  VF 
Sbjct: 126 GTQDAISAANPRVIDDSRA-----RKLSTDLKRCTYYETCATYGLNVERVFQ 172

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 30/193 (15%)

Query: 1   MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP 60
              G        ++V ++GD   GK+SL+     E+   K    H       +    + P
Sbjct: 30  RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGL-----NVVTKQAP 84

Query: 61  VTIIDTSSSLENKGKLN-------EE--------LKRADAVVLTYACNQQSTLSRLSSYW 105
                 +     +   +       E         + R+   +L       S       YW
Sbjct: 85  NIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKH----YW 140

Query: 106 LPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE-TCVECSATTMIQV 164
           L  + +   K P+IV   K+D    +N    +     I ++F  IE      S      V
Sbjct: 141 LRHIEKYGGKSPVIVVMNKIDENPSYNIEQKK-----INERFPAIENRFHRISCKNGDGV 195

Query: 165 PDVFYYAQKAVLH 177
             +    + AVLH
Sbjct: 196 ESIAKSLKSAVLH 208

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 24/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V++VG+ G GKS+L                H       D Y      D+  VT  + D 
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDH----AHEME-NSEDTYERRIMVDKEEVTLIVYDI 58

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +  G L +  L+  DA ++ ++   + + S++    L  LR       +P+I+ G 
Sbjct: 59  WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGN 117

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       SLEE      +      +C  +E SA       ++F 
Sbjct: 118 KSDLA-RSREVSLEEG-----RHLAGTLSCKHIETSAALHHNTRELFE 159

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGE 458
           VF+ +L G    GKS L  +F        +     E
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE 37

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 26/169 (15%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDT 66
           RVV++GD G GK+SL +  A +   +     H       D Y   + V        ++DT
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDL----HEQL--GEDVYERTLTVDGEDTTLVVVDT 59

Query: 67  SSSLENKGKLNEEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAG 122
             + +     ++E   +   A V+ Y+   + +    S     +LRR      VPII+ G
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVG 118

Query: 123 CKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            K DL       S+EE      +    +  C  +E SAT    V ++F 
Sbjct: 119 NKADLA-RCREVSVEEG-----RACAVVFDCKFIETSATLQHNVAELFE 161

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 37/175 (21%)

Query: 14  RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           RVV++G++G GKS+L    A   +S+      +        D Y     + +   S+++ 
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE------DTY--ERTLMVDGESATII 59

Query: 72  NKGKLN-------EE------LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKV 116
               L+        E      ++  DA ++ Y+   +++  + S     +LRR      +
Sbjct: 60  ---LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDI 115

Query: 117 PIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
           PII+ G K DL      +  E          +F      +E SA     V ++F 
Sbjct: 116 PIILVGNKSDLVRXREVSVSEGRAXAVVFDXKF------IETSAAVQHNVKELFE 164

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 40/191 (20%)

Query: 1   MPGGSGSSSRTGV---RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFY 55
           M   S  SS +G    RVV++G++G GKS+L    A   +S+      +        D Y
Sbjct: 23  MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTY 76

Query: 56  PDRVPVTIIDTSSSLENKGKLN-------EE------LKRADAVVLTYACNQQSTLSRLS 102
                + +   S+++     L+        E      ++  DA ++ Y+   +++  + S
Sbjct: 77  --ERTLMVDGESATII---LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKAS 131

Query: 103 SYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSA 158
                +LRR      +PII+ G K DL       S+ E      +    +  C  +E SA
Sbjct: 132 E-LRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEG-----RACAVVFDCKFIETSA 184

Query: 159 TTMIQVPDVFY 169
                V ++F 
Sbjct: 185 AVQHNVKELFE 195

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 35/179 (19%)

Query: 7   SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPV 61
             S   +R+ V+GD  +GKSSLI    T S                + Y      D    
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES-------EQYKKEMLVDGQTH 54

Query: 62  T--IIDTSSSLENKGKLNEE---LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK- 115
              I + + +         +      ADAV+  ++   +++   +S     +L  L  + 
Sbjct: 55  LVLIREEAGA--------PDAKFSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEG 105

Query: 116 -----VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
                + ++    ++                      R   +  E  AT  + V  VF 
Sbjct: 106 RGGLALALVGTQDRISA-SSPRVVGDARARALXADMKR--CSYYETXATYGLNVDRVFQ 161

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 27/168 (16%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +V+++G  G GKS+L                 A        Y      D    +  + D 
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGP-----EAEA--AGHTYDRSIVVDGEEASLMVYDI 56

Query: 67  SSSLENKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGC 123
               +    L    +   DA V+ Y+   + +  + S     +LRR      VPII+ G 
Sbjct: 57  WEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGN 114

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K DL       S++E      +    +  C  +E SA     V  +F 
Sbjct: 115 KSDLV-RSREVSVDEG-----RACAVVFDCKFIETSAALHHNVQALFE 156

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/187 (12%), Positives = 56/187 (29%), Gaps = 55/187 (29%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTI-IDTSS-SL 70
           +++VG+ G+GK++L+                   +L      D      T+ ID     +
Sbjct: 5   LMIVGNTGSGKTTLL------------------QQLMKTKKSDLGMQSATVGIDVKDWPI 46

Query: 71  ENKGKLNEELK---------------------RADAVVLTY-ACNQQSTLSRLSSYWLPE 108
           + + K   +L                      +    +  Y     Q+ +  +   WL  
Sbjct: 47  QIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMK-PWLFN 105

Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-------IETCVECSATTM 161
           ++      P+I+ G  LD+  +      +  M  I ++           +     +    
Sbjct: 106 IKARASSSPVILVGTHLDVSDEK---QRKACMSKITKELLNKRGFPAIRDYHFVNATEES 162

Query: 162 IQVPDVF 168
             +  + 
Sbjct: 163 DALAKLR 169

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 26/168 (15%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           RVVV G  G GKSSL+      +  +     + PT    D Y            + I DT
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDT----YIPTIE--DTYRQVISCDKSVCTLQITDT 63

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGC 123
           + S +        + +  A +L ++   + +L  L       + ++      +P+++ G 
Sbjct: 64  TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGN 122

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K D           E      Q   +   C  +E SA     V ++F 
Sbjct: 123 KCDE--TQREVDTREA-----QAVAQEWKCAFMETSAKMNYNVKELFQ 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           N +R ++FG    GKS+L+  F++  F + Y PT  + Y
Sbjct: 7   NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY 45

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 4   GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DR 58
                    V + ++G RG GKS+L     T+    +    + P     D Y      D 
Sbjct: 13  NLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISE----YDPN--LEDTYSSEETVDH 66

Query: 59  VPVT--IIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK- 115
            PV   ++DT+   +        L  A A ++ Y+ + + +    SSY   EL  L  K 
Sbjct: 67  QPVHLRVMDTADL-DTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYL--ELLALHAKE 123

Query: 116 ----VPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSA-TTMIQVPDVF 168
               +P ++ G KLD+   +   +  E              C   E SA      V  VF
Sbjct: 124 TQRSIPALLLGNKLDMA-QYRQVTKAEG-----VALAGRFGCLFFEVSACLDFEHVQHVF 177

Query: 169 Y 169
           +
Sbjct: 178 H 178

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VV+G  G GKS+L          EK    + PT    D Y         +  + I+DT
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTI--EDSYRKQVEVDCQQCMLEILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           + + +     +  +K      L Y+   QST + L      ++ R+     VP+I+ G K
Sbjct: 59  AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY 169
            DL  D      E+    + +Q+      +E SA + I V ++FY
Sbjct: 118 CDLE-DERVVGKEQGQN-LARQWCNCA-FLESSAKSKINVNEIFY 159

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 15/169 (8%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAA----AATESVPEKVPPVHAPTRLPPDFYPDRVPVTII 64
             + + V V G+ G+GKSS I         E    K   V       P  +P+   V   
Sbjct: 66  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 125

Query: 65  DTSSSLENKGKLNEELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPII 119
           D           +  L+       D  ++  A   +     +       +  ++ +   +
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDI----AKAISMMKKEFYFV 181

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
                 D+  + +          ++Q  R    CV       I  P +F
Sbjct: 182 RTKVDSDITNEADGEPQTFDKEKVLQDIR--LNCVNTFRENGIAEPPIF 228

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIIDT 66
           ++VVVG  G GKS+L          ++    + PT    D Y        +   + I+DT
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDE----YDPTI--EDSYRKQVVIDGETCLLDILDT 59

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   +   +   +  +++R+     VP+++ G K
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNK 118

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL         ++      Q          +E SA T   V D FY
Sbjct: 119 CDL--PSRTVDTKQA-----QDLARSYGIPFIETSAKTRQGVDDAFY 158

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-------PDRVPVTIIDT 66
           ++VVVG  G GKS+L          ++    + PT    D Y        +   + I+DT
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDE----YDPTI--EDSYRKQVVIDGETCLLDILDT 76

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   + + ++  +  +++R+     VP+++ G K
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNK 135

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL         ++       +  +      +E SA T   V D FY
Sbjct: 136 CDL--PTRTVDTKQA-----HELAKSYGIPFIETSAKTRQGVEDAFY 175

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 24/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-----DRVPVT--IIDT 66
           +VVV+G  G GKS+L     T +  EK    + PT    DFY      D  P    I+DT
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEK----YDPTI--EDFYRKEIEVDSSPSVLEILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           + + +     +  +K     +L Y+   Q +   +      ++ R+    KVP+I+ G K
Sbjct: 59  AGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           +DL       S  E      +   E   C  +E SA +   V ++F 
Sbjct: 118 VDLE-SEREVSSSEG-----RALAEEWGCPFMETSAKSKTMVDELFA 158

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 25/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VVVG  G GKS+L          ++      PT    D Y        +   + I+DT
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDE----CDPTI--EDSYRKQVVIDGETCLLDILDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E     ++ ++  +  +  +A N   +   +   +  +++R+     VP+++ G K
Sbjct: 59  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNK 117

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL          +      Q          +E SA T   V D FY
Sbjct: 118 SDL--AARTVESRQA-----QDLARSYGIPYIETSAKTRQGVEDAFY 157

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 50/205 (24%)

Query: 6   GSSSRTGVRVVVVGDRGTGKSSLI-----------------AAAATESVPEKVPPVHAPT 48
           G   ++  + V++G+   GKSS++                 A+  T  V      +   +
Sbjct: 1   GMEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNS 60

Query: 49  RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----------------------ADAV 86
               +   + +        ++  N    N    +                      A   
Sbjct: 61  NNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCA 120

Query: 87  VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ 146
           ++ +  +  +TL R  + W+ +L+       II+   K+D   +     + EV     Q+
Sbjct: 121 IVVFDISNSNTLDRAKT-WVNQLKISS-NYIIILVANKIDK--NKFQVDILEV-----QK 171

Query: 147 FREIETC--VECSATTMIQVPDVFY 169
           + +      ++ SA T   + ++FY
Sbjct: 172 YAQDNNLLFIQTSAKTGTNIKNIFY 196

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           N +R  +FG    GKS+L+  F++  F E+Y PT  + Y
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           RV V G  G GKSSL+      +  E     + PT    D Y            + I DT
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTV--EDTYRQVISCDKSICTLQITDT 58

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGC 123
           + S +        + +  A +L Y+   + +L  L      ++  +      +PI++ G 
Sbjct: 59  TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGN 117

Query: 124 KLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           K D           E      +       C  +E SA     V ++F 
Sbjct: 118 KCDES-PSREVQSSEA-----EALARTWKCAFMETSAKLNHNVKELFQ 159

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 24/179 (13%)

Query: 2   PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP----- 56
            GG   +S    +V++VG  G GKS+L      +   E     + PT+   D Y      
Sbjct: 8   GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVED----YEPTK--ADSYRKKVVL 61

Query: 57  --DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-- 112
             + V + I+DT+   +     +   +  +  +  ++  +  + +  +  +  ++ R+  
Sbjct: 62  DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKE 120

Query: 113 EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
           +  VP ++ G K DL  D    S+EE      +   E      VE SA T   V  VF+
Sbjct: 121 DENVPFLLVGNKSDLE-DKRQVSVEEA-----KNRAEQWNVNYVETSAKTRANVDKVFF 173

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 398 GDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG 457
           G P  +      ++           + + ++ G    GKSAL   F+   F E+Y PT  
Sbjct: 1   GSPGISGGGGGSQNSLA--------LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 52

Query: 458 EQY 460
           + Y
Sbjct: 53  DSY 55

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 24/167 (14%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP-------DRVPVTIIDT 66
           ++VVVG  G GKS+L                + PT    D Y            + I+DT
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTI--EDSYTKICSVDGIPARLDILDT 64

Query: 67  SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK 124
           +   E      + ++     +L +A N + + + +      ++ R+      P+++ G K
Sbjct: 65  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNK 123

Query: 125 LDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFY 169
            DL          E        F         E SA   + V + F 
Sbjct: 124 ADLE-SQRQVPRSEA-----SAFGASHHVAYFEASAKLRLNVDEAFE 164

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 414 RKKQQTERNVFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTT-----------GEQY 460
            K +Q + N    L+ G    GKS+ +NS +  +      +               G   
Sbjct: 27  GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT- 85

Query: 461 AVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV 504
            +N++D PG  +   +  +  E  +K  L N+      DV ++V
Sbjct: 86  -INIIDTPGLVEAGYVNHQALEL-IKGFLVNRTI----DVLLYV 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	100.0
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.97
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.97
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.96
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.94
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.94
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.93
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.93
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.93
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.93
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.93
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.93
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.93
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.93
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.93
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.93
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.93
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.93
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.93
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.93
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.93
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.93
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.93
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.93
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.93
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.93
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.93
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.93
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.93
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.93
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.93
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.93
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.92
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.92
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.92
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.92
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.92
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.92
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.92
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.92
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.92
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.92
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.92
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.92
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.92
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.92
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.92
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.92
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.91
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.91
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.91
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.91
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.91
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.91
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.91
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.91
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.91
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.91
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.91
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.9
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.9
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.9
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.9
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.9
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.82
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.89
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.89
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.89
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.88
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.88
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.88
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.88
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.87
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.87
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.87
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.87
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.86
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.86
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.86
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.86
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.85
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.85
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.85
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.84
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.84
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.84
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.83
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.83
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.81
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.78
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.77
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.77
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.77
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.76
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.76
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.76
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.75
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.74
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.73
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.73
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.72
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.72
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.72
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.72
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.72
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.72
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.71
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.7
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.7
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.7
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.7
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.69
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.69
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.69
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.69
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.68
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.67
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.67
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.67
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.66
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.66
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.66
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.66
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.65
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.65
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.63
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.63
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.63
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.62
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.62
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.6
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.59
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.59
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.59
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.56
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.56
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.56
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.54
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.54
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.54
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.52
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.52
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.52
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.51
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.51
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.51
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.51
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.5
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.5
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.5
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.5
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.5
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.5
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.49
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.49
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.49
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.49
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.49
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.49
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.49
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.49
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.49
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.48
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.48
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.48
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.48
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.48
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.48
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.48
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.48
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.47
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.47
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.47
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.47
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.47
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.47
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.47
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.47
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.47
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.47
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.46
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.46
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.46
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.46
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.46
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.46
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.46
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.46
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.45
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.45
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.45
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.44
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.44
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.44
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.44
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.43
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.43
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.42
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.42
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.42
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.42
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.42
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.42
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.42
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.41
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.41
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.41
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.41
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.4
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.4
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.4
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.4
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.4
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.39
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.39
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.39
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.39
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.39
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.39
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.39
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.39
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.38
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.38
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.38
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.38
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.38
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.38
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.38
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.38
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.37
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.37
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.37
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.37
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.36
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.36
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.36
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.35
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.35
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.34
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.34
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.34
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.33
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.33
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.33
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.33
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.33
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.33
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.32
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.32
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.32
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.32
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.31
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.31
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.31
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.3
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.3
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.29
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.27
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.27
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.26
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.24
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.24
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.88
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.23
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.23
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.21
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.21
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.2
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.19
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.17
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.17
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.14
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.13
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.11
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.11
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.1
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.1
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.1
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.08
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.07
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.07
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.06
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.05
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.05
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.04
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.04
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.04
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.02
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.02
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.0
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.99
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.99
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.96
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.95
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.93
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.91
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.88
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.85
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.85
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.84
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.84
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.8
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.79
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	98.78
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.78
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.77
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.77
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	98.76
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.75
3fwb_A	161	Cell division control protein 31; gene gating, com	98.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.74
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.73
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.72
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	98.72
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	98.7
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	98.7
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.7
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	98.69
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	98.68
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.68
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	98.68
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	98.67
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	98.67
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.67
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.66
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.65
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.65
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.65
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	98.65
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	98.65
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.64
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	98.64
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.63
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	98.63
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.63
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	98.63
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	98.63
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.63
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.62
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	98.62
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.61
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.61
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.61
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	98.61
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	98.6
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	98.6
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	98.6
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.6
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	98.6
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.59
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	98.58
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.58
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	98.58
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.57
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.57
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.57
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.56
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.56
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.56
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	98.55
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	98.55
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	98.54
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	98.54
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.54
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.53
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.53
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	98.53
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.53
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.51
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	98.5
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	98.5
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	98.5
1y1x_A	191	Leishmania major homolog of programmed cell death	98.5
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	98.49
2jnf_A	158	Troponin C; stretch activated muscle contraction,	98.49
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.48
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	98.48
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	98.47
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.46
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.46
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	98.46
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	98.45
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.44
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.43
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	98.42
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	98.4
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.4
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.4
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.39
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	98.39
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	98.39
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	98.38
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	98.38
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	98.37
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.37
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.36
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	98.36
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	98.35
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.35
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.34
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.34
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	98.34
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.33
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.33
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	98.31
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.31
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	98.31
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.29
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	98.28
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	98.27
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	98.26
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	98.24
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.19
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	98.18
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	98.17
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.15
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.15
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.14
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	98.13
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	98.11
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	98.1
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	98.1
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	98.1
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.09
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	98.08
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.07
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	98.04
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	98.03
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	98.02
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	98.01
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	97.99
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	97.98
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.96
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	97.96
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	97.95
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	97.94
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	97.94
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	97.93
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	97.92
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	97.91
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	97.88
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	97.86
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	97.85
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	97.84
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	97.82
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	97.82
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	97.81

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=7.1e-34  Score=295.39  Aligned_cols=150  Identities=17%  Similarity=0.120  Sum_probs=100.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCc--------cchhhhHHhh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSL--------ENKGKLNEEL   80 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~   80 (507)
                      ..+|+|+|++|||||||+|+|++..+.  .....+++|   ....+.+.+..+.+|||||+.        .+..+...++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~--~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce--eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            369999999999999999999988743  223334444   223344567889999999986        4455667889


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      +.||++|+|+|++++.+..+..  +...+++.  ++|+++|+||+|+......  .   ...+  .++. .+++++||++
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~~--~~~~l~~~--~~pvilv~NK~D~~~~~~~--~---~~~~--~lg~-~~~~~iSA~~  148 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADEE--VAKILYRT--KKPVVLAVNKLDNTEMRAN--I---YDFY--SLGF-GEPYPISGTH  148 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHHH--HHHHHTTC--CSCEEEEEECCCC-----C--C---CSSG--GGSS-CCCEECBTTT
T ss_pred             HhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECccCccchhh--H---HHHH--HcCC-CCeEEEeCcC
Confidence            9999999999999987766532  66666654  7999999999998754221  1   1111  2221 2579999999


Q ss_pred             CCCchHHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKAV  175 (507)
Q Consensus       161 g~gi~~l~~~i~~~i  175 (507)
                      |.|+.++++++.+.+
T Consensus       149 g~gv~~L~~~i~~~l  163 (436)
T 2hjg_A          149 GLGLGDLLDAVAEHF  163 (436)
T ss_dssp             TBTHHHHHHHHHHTG
T ss_pred             CCChHHHHHHHHHhc
Confidence            999999999987643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.97  E-value=9.4e-32  Score=279.65  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccc---------hhhhHHhh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLEN---------KGKLNEEL   80 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~   80 (507)
                      .+|+|+|+||||||||+|+|++.+.  +.....+++|..   ..+.+.+..+.+|||||++..         ..+...++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~--~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKK--AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC--ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            3899999999999999999998873  223333444422   233456778999999997642         23456789


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhh-HHHHHHhcccCcEEEeCcc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVM-GPIMQQFREIETCVECSAT  159 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++||++|+|+|++++.+..+..  +...+++.  ++|+++|+||+|+...     ..... ..+. .++. .+++++||+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~--i~~~l~~~--~~p~ilv~NK~D~~~~-----~~~~~~~~~~-~lg~-~~~~~iSA~  148 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDES--LADFLRKS--TVDTILVANKAENLRE-----FEREVKPELY-SLGF-GEPIPVSAE  148 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHH--HHHHHHHH--TCCEEEEEESCCSHHH-----HHHHTHHHHG-GGSS-CSCEECBTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc-----cHHHHHHHHH-hcCC-CCEEEEecc
Confidence            9999999999999876665422  45556655  7999999999997531     01111 2222 2332 257999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKAV  175 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i  175 (507)
                      +|.|+.++++.|.+.+
T Consensus       149 ~g~gv~~L~~~i~~~l  164 (439)
T 1mky_A          149 HNINLDTMLETIIKKL  164 (439)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.97  E-value=7.7e-32  Score=281.67  Aligned_cols=151  Identities=17%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCC--------CccchhhhH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSS--------SLENKGKLN   77 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G--------~~~~~~~~~   77 (507)
                      .+...+|+|+|++|||||||+|+|++..+.  .....+++|   ....+.+.+..+.+|||||        ++.+.....
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERIS--IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCc--ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            345679999999999999999999998753  222233344   2234446678999999999        445556677


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      .+++.+|++|+|+|.+++.+..+.  .+...+++.  ++|+++|+||+|+......     ....+...++   .++++|
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~~d~--~l~~~l~~~--~~pvilV~NK~D~~~~~~~-----~~e~~~lg~~---~~~~iS  165 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFG---EPYPIS  165 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCHHHH--HHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSS---SEEECC
T ss_pred             hhHhhCCEEEEEEeCCCCCChHHH--HHHHHHHHc--CCCEEEEEECccchhhhhh-----HHHHHHcCCC---ceEEee
Confidence            889999999999998876555443  266667664  8999999999998753221     1122222333   468999


Q ss_pred             cccCCCchHHHHHHHH
Q 010548          158 ATTMIQVPDVFYYAQK  173 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~  173 (507)
                      |++|.|+.++++.+.+
T Consensus       166 A~~g~gv~~L~~~i~~  181 (456)
T 4dcu_A          166 GTHGLGLGDLLDAVAE  181 (456)
T ss_dssp             TTTCTTHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHh
Confidence            9999999999998754

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.96  E-value=2.8e-29  Score=235.57  Aligned_cols=164  Identities=17%  Similarity=0.231  Sum_probs=133.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-C-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-P-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      +++.+||+|+|++|||||||++||+.+.|...+.++.. . ......+....+++.||||+|++++..+...+++.++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            46789999999999999999999999999877655433 2 223445556778999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ++|||++++.||+.+.. |+..++.. .+++|++|||||+|+...+.+  ..++...++++++.  +|++|||++|.||+
T Consensus        90 ilv~di~~~~Sf~~i~~-~~~~i~~~~~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~~--~~~e~SAktg~nV~  164 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNV--MFIETSAKAGYNVK  164 (216)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEEBTTTTBSHH
T ss_pred             EEEeecchhHHHHHHHH-HHHHHHHhcCCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhCC--eeEEEeCCCCcCHH
Confidence            99999999999999987 88887654 468999999999999887776  45567888888874  69999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      ++|+.|++.+..
T Consensus       165 e~F~~i~~~i~~  176 (216)
T 4dkx_A          165 QLFRRVAAALPG  176 (216)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2e-26  Score=212.36  Aligned_cols=172  Identities=23%  Similarity=0.339  Sum_probs=138.5

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (507)
                      |........+||+++|++|||||||+++|++..+...+.++. ........+....+.+.+|||||++++......+++.
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   89 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   89 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence            433333457899999999999999999999988766644433 3333334445556899999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhccc
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~  150 (507)
                      +|++++|||++++.++..+...|+..++...+++|+++|+||+|+....            .+  ..+....++..++. 
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-  166 (194)
T 2atx_A           90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI--CVEQGQKLAKEIGA-  166 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC--CHHHHHHHHHHHTC-
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCccc--CHHHHHHHHHHcCC-
Confidence            9999999999999999999856999998877789999999999997641            22  33456677777764 


Q ss_pred             CcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          151 ETCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      .++++|||++|.||+++|++|.+.++.|
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~p  194 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAILTP  194 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence            2699999999999999999999887653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.94  E-value=4.3e-26  Score=210.23  Aligned_cols=170  Identities=21%  Similarity=0.346  Sum_probs=138.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+.+||+++|++|||||||+++|++..+...+.++... +.....+....+.+.+|||||++.+......+++.+|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            345799999999999999999999999876665443322 2233344456778899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|||++++.++..+...|...++...+++|+++|+||+|+..........+....++..++.. .+++|||++|.||+++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  178 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV-AYIEASSVAKIGLNEV  178 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS-CEEECBTTTTBSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC-EEEEeecCCCCCHHHH
Confidence            999999999999986669999988877899999999999986422112455667777777642 4999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 010548          168 FYYAQKAVLHPT  179 (507)
Q Consensus       168 ~~~i~~~i~~~~  179 (507)
                      |++|.+.+....
T Consensus       179 ~~~l~~~i~~~~  190 (194)
T 3reg_A          179 FEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHCSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999886543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.94  E-value=2.3e-26  Score=215.86  Aligned_cols=170  Identities=24%  Similarity=0.283  Sum_probs=135.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..++.+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||+|++.+..++..+++.+|++
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            445689999999999999999999999988766444332 2233344556678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEE
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCV  154 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (507)
                      |+|||++++.++..+...|+..++...+++|+++|+||+|+..+            +.+  ..+....++..++. .+++
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~  179 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPI--SYEQGCAIAKQLGA-EIYL  179 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHHTC-SEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCcc--CHHHHHHHHHHcCC-CEEE
Confidence            99999999999999544599999988788999999999999763            333  44566777888764 2699


Q ss_pred             EeCcccCCC-chHHHHHHHHHHcCCCC
Q 010548          155 ECSATTMIQ-VPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       155 ~~SA~~g~g-i~~l~~~i~~~i~~~~~  180 (507)
                      +|||++|.| |+++|+.|.+.+.....
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999998 99999999998876543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.94  E-value=6.7e-26  Score=207.48  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=130.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..++.+||+|+|++|||||||+++|+++.+...+.++...+.....+....+.+.+|||+|++.+.     +++.+|+++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i   90 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV   90 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence            346689999999999999999999999998776655544344444555667889999999987765     788999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCC--CCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      +|||++++.+++.+.. |+..+....  .++|+++|+||+|+..  .+.+  ..+....++..++.. ++++|||++|.|
T Consensus        91 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~~-~~~e~Sa~~~~g  166 (184)
T 3ihw_A           91 FVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKRC-TYYETCATYGLN  166 (184)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTTC-EEEEEBTTTTBT
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccccc--CHHHHHHHHHHcCCC-eEEEecCCCCCC
Confidence            9999999999999886 999888753  4799999999999953  2333  445667788877633 799999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      |+++|++|.+.+.
T Consensus       167 v~~lf~~l~~~i~  179 (184)
T 3ihw_A          167 VERVFQDVAQKVV  179 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.94  E-value=4.7e-26  Score=208.23  Aligned_cols=166  Identities=25%  Similarity=0.379  Sum_probs=133.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ....+||+++|++|||||||+++|++..+...+.++. ..++....+....+.+.+|||||++.+......+++.+|++|
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            4567999999999999999999999988765543322 233333445566789999999999999888899999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEE
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+...            +.+  ..+....+++.++. .++++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~e  160 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIE  160 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCC--CHHHHHHHHHHcCC-cEEEE
Confidence            9999999999999855699999887778999999999999753            222  33456677777763 27999


Q ss_pred             eCcc-cCCCchHHHHHHHHHHcC
Q 010548          156 CSAT-TMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       156 ~SA~-~g~gi~~l~~~i~~~i~~  177 (507)
                      |||+ +|.||+++|+.|.+.++.
T Consensus       161 ~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          161 CSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eeecCCCcCHHHHHHHHHHHHhc
Confidence            9999 689999999999987753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.94  E-value=5.3e-26  Score=206.85  Aligned_cols=168  Identities=24%  Similarity=0.367  Sum_probs=125.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ++.+||+++|++|||||||+++++++.+...+.++. ........+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            456999999999999999999999988766544432 2222333444556788899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc--------cchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA--------TSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      |||++++.+++.+...|...++...+++|+++|+||+|+...+..        ....+....++..++. .++++|||++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~  164 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-PAYIECSSKS  164 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-SEEEECCTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-CEEEEEECCC
Confidence            999999999999986699999887778999999999999764321        0123445667777763 2799999999


Q ss_pred             CCCchHHHHHHHHHHcCC
Q 010548          161 MIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~~  178 (507)
                      |.|++++|+.|.+.++.|
T Consensus       165 ~~gi~~l~~~l~~~i~~~  182 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVLQP  182 (182)
T ss_dssp             CTTHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999999887653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=1.2e-25  Score=205.08  Aligned_cols=167  Identities=25%  Similarity=0.338  Sum_probs=135.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ++.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+......+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            4679999999999999999999998887665444332 223334445567889999999999999888899999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhcccCcEEEe
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      |||++++.++..+...|+..++...+++|+++|+||+|+....            .+  ..+....++..++. .++++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~  159 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLEC  159 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccC--CHHHHHHHHHhcCC-cEEEEe
Confidence            9999999999998856999998876789999999999997642            22  23445566666653 279999


Q ss_pred             CcccCCCchHHHHHHHHHHcCCC
Q 010548          157 SATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      ||++|.|++++|+.|.+.+..+.
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cCCCccCHHHHHHHHHHHHhccc
Confidence            99999999999999999887653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.93  E-value=1.1e-25  Score=201.46  Aligned_cols=161  Identities=24%  Similarity=0.332  Sum_probs=129.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +.+||+++|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+......+++.+|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            568999999999999999999999887655444322 2223334455678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ||++++.+++.+.. |...+...  ..++|+++|+||+|+.+.+.+  ..+....++..++. .++++|||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  157 (167)
T 1c1y_A           82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCN-CAFLESSAKSKINVNEI  157 (167)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTS-CEEEECBTTTTBSHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccC--CHHHHHHHHHHccC-CcEEEecCCCCCCHHHH
Confidence            99999999999886 77776653  347999999999999765544  34455667776633 37999999999999999


Q ss_pred             HHHHHHHH
Q 010548          168 FYYAQKAV  175 (507)
Q Consensus       168 ~~~i~~~i  175 (507)
                      +++|.+.+
T Consensus       158 ~~~l~~~i  165 (167)
T 1c1y_A          158 FYDLVRQI  165 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.93  E-value=1.2e-25  Score=201.39  Aligned_cols=160  Identities=19%  Similarity=0.178  Sum_probs=110.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      .+||+++|++|||||||+++|++..+....++..........+....+.+.+|||+|++.+......+++.+|++++|||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            58999999999999999999998765433332222222334455667899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~~  156 (166)
T 3q72_A           82 VTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFDC--KFIETSAALHHNVQALFE  156 (166)
T ss_dssp             TTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTTC--EEEECBGGGTBSHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEecccccccccc--CHHHHHHHHHHhCC--cEEEeccCCCCCHHHHHH
Confidence            999999999887 77777664  347999999999999876655  34445666666663  799999999999999999


Q ss_pred             HHHHHHc
Q 010548          170 YAQKAVL  176 (507)
Q Consensus       170 ~i~~~i~  176 (507)
                      +|.+.+.
T Consensus       157 ~l~~~~~  163 (166)
T 3q72_A          157 GVVRQIR  163 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988763

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.93  E-value=2.1e-25  Score=202.40  Aligned_cols=158  Identities=18%  Similarity=0.171  Sum_probs=122.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ++.+||+++|++|||||||+++|+++.+....++..........+....+.+.+|||+|++.     ..+++.+|++|+|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv   79 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV   79 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence            46799999999999999999999999886633333322333344445568899999999875     5678999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc----CCCCcEEEEEecccCCC--CCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL----EIKVPIIVAGCKLDLRG--DHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~----~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      ||++++.+++.+.. |+..+...    .+++|+++|+||+|+..  .+.+  ..+....++..++.. ++++|||++|.|
T Consensus        80 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  155 (178)
T 2iwr_A           80 FSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV--GDARARALXADMKRC-SYYETXATYGLN  155 (178)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHSSE-EEEEEBTTTTBT
T ss_pred             EECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHHHhhcCC-eEEEEeccccCC
Confidence            99999999999886 76555443    24799999999999953  2333  344556666666432 799999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      ++++|+.|.+.+.
T Consensus       156 i~~lf~~l~~~~~  168 (178)
T 2iwr_A          156 VDRVFQEVAQKVV  168 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=1.5e-25  Score=208.29  Aligned_cols=168  Identities=20%  Similarity=0.270  Sum_probs=130.9

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (507)
                      +........+||+|+|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+......+++
T Consensus        18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (201)
T 2ew1_A           18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR   97 (201)
T ss_dssp             ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred             CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3333445679999999999999999999999887654333222 111 22334445678999999999999988999999


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      .+|++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++...+.  ++++|||++
T Consensus        98 ~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~  172 (201)
T 2ew1_A           98 SANALILTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQDM--YYLETSAKE  172 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--CEEECCTTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--EEEEEeCCC
Confidence            9999999999999999999876 888887754 47999999999999765554  33445666666653  799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 010548          161 MIQVPDVFYYAQKAVL  176 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~  176 (507)
                      |.||+++|++|.+.+.
T Consensus       173 g~gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          173 SDNVEKLFLDLACRLI  188 (201)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.93  E-value=2.4e-25  Score=199.13  Aligned_cols=162  Identities=20%  Similarity=0.298  Sum_probs=128.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ++.+||+++|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++++......+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            35699999999999999999999998876555443332 22333444556789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.+++.+.. |+..+....  .++|+++|+||+|+...+..  ..+....++..++.  +++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWNV--NYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCcc--CHHHHHHHHHHcCC--eEEEeCCCCCCCHHH
Confidence            999999999999876 887776653  37999999999999765554  33455666666663  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       157 l~~~l~~~i~  166 (168)
T 1u8z_A          157 VFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.93  E-value=1.9e-25  Score=208.84  Aligned_cols=169  Identities=26%  Similarity=0.384  Sum_probs=135.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+.+||+|+|++|||||||+++|+++.+...+.++. ..+.....+....+.+.+|||||++.+..++..+++.+|++|+
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            467999999999999999999999988766644433 3333334455667899999999999999989999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc------cchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA------TSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      |||++++.+++.+...|+..++...+++|+++|+||+|+......      ....+....++..++. .++++|||++|.
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~  165 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-AAYIECSSKTQQ  165 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-SEEEECCTTTCT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-ceEEEccCCCCC
Confidence            999999999999875699999887778999999999999764321      0123455667777763 279999999999


Q ss_pred             CchHHHHHHHHHHcCCC
Q 010548          163 QVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       163 gi~~l~~~i~~~i~~~~  179 (507)
                      ||+++|++|.+.+....
T Consensus       166 gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          166 NVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             THHHHHHHHHHHHHCC-
T ss_pred             CHHHHHHHHHHHHhhhh
Confidence            99999999999887653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.93  E-value=2.9e-25  Score=202.42  Aligned_cols=164  Identities=16%  Similarity=0.255  Sum_probs=133.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ...+.+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++.+......+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            3456899999999999999999999998876665443332 223334445567788999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc-cCCC
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT-TMIQ  163 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~-~g~g  163 (507)
                      ++|||++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+  ..+....++..++.  ++++|||+ +|.|
T Consensus        94 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYNI--PYIETSAKDPPLN  168 (183)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHTC--CEEEEBCSSSCBS
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhCC--eEEEeccCCCCCC
Confidence            99999999999999886 87777552  347999999999999876655  44556778888873  79999999 9999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      ++++|+.|.+.+.
T Consensus       169 v~~l~~~l~~~i~  181 (183)
T 3kkq_A          169 VDKTFHDLVRVIR  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988763

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.93  E-value=3.7e-25  Score=205.33  Aligned_cols=163  Identities=25%  Similarity=0.389  Sum_probs=132.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ..+||+|+|++|||||||+++|.+..+...+.+ ..........+....+.+.+|||||++.+......+++.+|++++|
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v  103 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC  103 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence            468999999999999999999999887655433 2223323334445567999999999999999899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhcccCcEEEeC
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      ||++++.+++.+...|...++...+++|+++|+||+|+....            .+  ..+....++..++.. ++++||
T Consensus       104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~~~S  180 (201)
T 2gco_A          104 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPV--RSEEGRDMANRISAF-GYLECS  180 (201)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCC--CHHHHHHHHHHTTCS-EEEECC
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcC--CHHHHHHHHHhCCCc-EEEEee
Confidence            999999999999666999998877789999999999997651            22  234455666666542 689999


Q ss_pred             cccCCCchHHHHHHHHHHc
Q 010548          158 ATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~  176 (507)
                      |++|.||+++|++|.+.++
T Consensus       181 A~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.93  E-value=3.6e-25  Score=203.16  Aligned_cols=163  Identities=18%  Similarity=0.222  Sum_probs=132.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+|+|++|||||||+++|++..+.....++.....  ....+....+.+.+|||||++.+......+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            34568999999999999999999999887655443332211  2233345578999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....+++.++.  ++++|||++|.|++
T Consensus        99 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~  173 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLGF--EFFEASAKENINVK  173 (189)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccccccCC--CHHHHHHHHHHcCC--eEEEEECCCCCCHH
Confidence            99999999999999886 888887754 47999999999999765544  33456677777764  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       174 ~l~~~l~~~i~  184 (189)
T 2gf9_A          174 QVFERLVDVIC  184 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=211.25  Aligned_cols=169  Identities=27%  Similarity=0.367  Sum_probs=116.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+.+||+|+|++|||||||+++|+++.+...+.++.. .......+....+.+.+|||||++.+...+..+++.+|+++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            34579999999999999999999999887655444332 22233344455678999999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      +|||++++.+++.+...|+..++...+++|+++|+||+|+......          ....+....+++.++. .++++||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-VAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-SEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-CEEEEec
Confidence            9999999999999976699999887778999999999999765310          0123445666777663 2699999


Q ss_pred             cccCCCchHHHHHHHHHHcCC
Q 010548          158 ATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~~  178 (507)
                      |++|.||+++|+.|.+.+...
T Consensus       190 A~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999887543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=206.01  Aligned_cols=166  Identities=27%  Similarity=0.373  Sum_probs=127.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+.+||+|+|++|||||||+++|++..+...+.++.. .+.....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            45689999999999999999999999887665544332 22223334445678899999999999998999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEE
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+...            +.+  ..+....++..++. .++++
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~  173 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV--PEEAAKLLAEEIKA-ASYIE  173 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccC--CHHHHHHHHHhcCC-cEEEE
Confidence            9999999999999975699999887778999999999999753            222  33456667777663 26999


Q ss_pred             eCcccCCCchHHHHHHHHHHcC
Q 010548          156 CSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      |||++|.||+++|++|.+.+..
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999987753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.93  E-value=3.7e-25  Score=200.41  Aligned_cols=163  Identities=23%  Similarity=0.299  Sum_probs=132.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+|+|++|||||||+++|++..+...+.++.. .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            44579999999999999999999999887665444332 21 12234445568999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ++|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.|++
T Consensus        92 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  166 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENGL--LFLEASAKTGENVE  166 (179)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred             EEEEeCcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence            99999999999999886 888877654 58999999999999765544  33456667777663  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       167 ~l~~~l~~~i~  177 (179)
T 1z0f_A          167 DAFLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.93  E-value=4.5e-25  Score=199.19  Aligned_cols=162  Identities=23%  Similarity=0.244  Sum_probs=119.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCcc--chhhhHHhhccCCEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE--NKGKLNEELKRADAV   86 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~ad~i   86 (507)
                      .+.+||+|+|++|||||||+++|++..+....++..... .....+....+.+.+|||||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            356899999999999999999999988755444432222 12234445567899999999887  455667788999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      ++|||++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+ . .+....++..++.  ++++|||++|.|+
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~-~~~~~~~~~~~~~--~~~~~Sa~~g~gi  156 (175)
T 2nzj_A           82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREV-S-VEEGRACAVVFDC--KFIETSATLQHNV  156 (175)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCS-C-HHHHHHHHHHHTS--EEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhcccccc-C-HHHHHHHHHHcCC--eEEEEecCCCCCH
Confidence            99999999999999886 88877764  247999999999999876655 2 3445566666663  7999999999999


Q ss_pred             hHHHHHHHHHHc
Q 010548          165 PDVFYYAQKAVL  176 (507)
Q Consensus       165 ~~l~~~i~~~i~  176 (507)
                      +++|++|.+.+.
T Consensus       157 ~~l~~~l~~~~~  168 (175)
T 2nzj_A          157 AELFEGVVRQLR  168 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.93  E-value=6.5e-25  Score=199.42  Aligned_cols=164  Identities=22%  Similarity=0.263  Sum_probs=131.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+++|++|||||||+++|++..+.....++. .... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            4557999999999999999999999988765533322 2221 2233445568999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.+++.+.. |+..+.... +++|+++|+||+|+...+.+  ..+....++...+.  ++++|||++|.|++
T Consensus        89 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           89 IIVFDVTNQASFERAKK-WVQELQAQGNPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENGL--FFMETSAKTATNVK  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCSSSCTTHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCcccccccC--CHHHHHHHHHHcCC--EEEEEECCCCCCHH
Confidence            99999999999999886 888877653 47999999999999776554  33456667766653  69999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      ++|++|.+.+..
T Consensus       164 ~l~~~l~~~~~~  175 (181)
T 2efe_B          164 EIFYEIARRLPR  175 (181)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.93  E-value=1.2e-25  Score=209.28  Aligned_cols=166  Identities=23%  Similarity=0.332  Sum_probs=131.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+.+||+++|++|||||||+++|+++.+.....++.. .......+....+.+.+|||||++.+......+++.+|+++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            35679999999999999999999999887666444332 22233445566788889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      +|||++++.+++.+...|...++...+++|+++|+||+|+......          ....+....+++.++.. ++++||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV-KYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS-EEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc-EEEEee
Confidence            9999999999999986699999888778999999999999765320          01234455666666642 699999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 010548          158 ATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i  175 (507)
                      |++|.||+++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.93  E-value=1.3e-25  Score=209.40  Aligned_cols=164  Identities=26%  Similarity=0.379  Sum_probs=132.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ...+||+|+|++|||||||+++|++..+...+.++. ..++....+....+.+.+|||+|++.+......+++.+|++|+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            457999999999999999999999998866543322 2233334445667899999999999999888999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEe
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      |||++++.+++.+...|+..++...+++|+++|+||+|+...            +.+  ..+....+++.++.. ++++|
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~e~  182 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGAA-TYIEC  182 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTCS-EEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCC--CHHHHHHHHHHcCCC-EEEEe
Confidence            999999999999855699999887778999999999999742            222  334566777777632 79999


Q ss_pred             Ccc-cCCCchHHHHHHHHHHc
Q 010548          157 SAT-TMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       157 SA~-~g~gi~~l~~~i~~~i~  176 (507)
                      ||+ +|.||+++|+.|.+.++
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHh
Confidence            999 68999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.93  E-value=4.4e-25  Score=202.60  Aligned_cols=169  Identities=15%  Similarity=0.203  Sum_probs=131.8

Q ss_pred             CCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee--eCCcccCC---------ceEEEEEeCCCCc
Q 010548            3 GGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR--LPPDFYPD---------RVPVTIIDTSSSL   70 (507)
Q Consensus         3 ~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t--~~~~~~~~---------~~~~~i~Dt~G~~   70 (507)
                      +|+.+.....+||+|+|++|||||||+++|++..+.....++... +.  ....+...         .+.+.+|||||++
T Consensus         2 ~m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   81 (195)
T 3bc1_A            2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE   81 (195)
T ss_dssp             ----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred             CCcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence            466555667899999999999999999999998876554333221 11  11122222         5799999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (507)
                      .+......+++.+|++|+|||++++.++..+.. |+..+....  .++|+++|+||+|+...+.+  ..+....++..++
T Consensus        82 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  158 (195)
T 3bc1_A           82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAV--KEEEARELAEKYG  158 (195)
T ss_dssp             GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence            999999999999999999999999999999875 888887654  47999999999999765444  3345666777766


Q ss_pred             ccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          149 EIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       149 ~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      .  ++++|||++|.|++++|++|.+.+.
T Consensus       159 ~--~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          159 I--PYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             C--CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             C--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3  7999999999999999999988763

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.93  E-value=2.3e-25  Score=204.33  Aligned_cols=161  Identities=22%  Similarity=0.256  Sum_probs=128.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+.+||+|+|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||+|++.+... ..+++.+|++++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il   97 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV   97 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence            457999999999999999999999998776655544322 233344556789999999999888764 679999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc-ccCCC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA-TTMIQ  163 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA-~~g~g  163 (507)
                      |||++++.+++.+.. |+..+....    .++|+++|+||+|+...+.+  ..+....++..++.  ++++||| ++|.|
T Consensus        98 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sa~~~g~g  172 (187)
T 3c5c_A           98 VYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRFGC--LFFEVSACLDFEH  172 (187)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECCSSSCSHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHcCC--cEEEEeecCcccc
Confidence            999999999999886 888877642    58999999999999765555  34556777777764  7999999 89999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      |+++|+.|.+.+.
T Consensus       173 v~~lf~~l~~~i~  185 (187)
T 3c5c_A          173 VQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.5e-25  Score=201.86  Aligned_cols=163  Identities=20%  Similarity=0.232  Sum_probs=130.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..+.+||+|+|++|||||||+++|++..+.....+.... .. ....+....+.+.+|||||.+.+......+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            456799999999999999999999998876543332221 11 2223334458899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      ++|||++++.++..+.. |+..+....+++|+++|+||+|+...+..  ..+....++..++.  ++++|||++|.|+++
T Consensus        86 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKR-WLHEINQNCDDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMGI--QLFETSAKENVNVEE  160 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--CEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCCCchhccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHHH
Confidence            99999999999999876 99988887778999999999999876554  33455666776664  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       161 l~~~l~~~~~  170 (181)
T 3tw8_B          161 MFNCITELVL  170 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.93  E-value=3.9e-25  Score=198.34  Aligned_cols=161  Identities=20%  Similarity=0.241  Sum_probs=129.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ++.+||+++|++|||||||+++|+++.+.....++.....  ....+....+.+.+|||||++.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4578999999999999999999999887655433322211  22334455789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+... .+++|+++|+||+|+...+..  ..+....++...+.  +++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~  158 (170)
T 1r2q_A           84 VVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANKRAV--DFQEAQSYADDNSL--LFMETSAKTSMNVNE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCcccccc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence            9999999999999886 88777664 458999999999999765444  23445566666653  799999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      ++++|.+.+
T Consensus       159 l~~~i~~~~  167 (170)
T 1r2q_A          159 IFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHHH
Confidence            999998765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.93  E-value=5.1e-25  Score=202.56  Aligned_cols=165  Identities=19%  Similarity=0.271  Sum_probs=130.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC-CCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV-HAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~-~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      ......+||+|+|++|||||||+++|++..+.....++ ..... ....+....+.+.+|||||++.+...+..+++.+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34456799999999999999999999998876553332 22222 22334445689999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      ++|+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~g  170 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHGL--IFMETSAKTACN  170 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEECTTTCTT
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcCC--EEEEEeCCCCCC
Confidence            9999999999999999886 88888765 347999999999999765554  34456667777664  799999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      |+++|++|.+.+.
T Consensus       171 i~~l~~~l~~~i~  183 (191)
T 2a5j_A          171 VEEAFINTAKEIY  183 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=206.08  Aligned_cols=165  Identities=19%  Similarity=0.329  Sum_probs=125.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      .....+||+|+|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            344578999999999999999999999887655433222 111 223334456789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      +|+|||++++.+++.+.. |+..++... .++|+++|+||+|+...+.+  ..+....+++.+.. .++++|||++|.||
T Consensus       102 iilV~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi  177 (192)
T 2il1_A          102 IILVYDITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETDREI--TRQQGEKFAQQITG-MRFCEASAKDNFNV  177 (192)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTSTT-CEEEECBTTTTBSH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHhcCC-CeEEEEeCCCCCCH
Confidence            999999999999999875 888887754 37999999999999765554  23445666666433 27999999999999


Q ss_pred             hHHHHHHHHHHc
Q 010548          165 PDVFYYAQKAVL  176 (507)
Q Consensus       165 ~~l~~~i~~~i~  176 (507)
                      +++|++|.+.+.
T Consensus       178 ~~l~~~l~~~i~  189 (192)
T 2il1_A          178 DEIFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.93  E-value=5.1e-25  Score=197.73  Aligned_cols=162  Identities=21%  Similarity=0.317  Sum_probs=131.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .+.+||+++|++|||||||+++|++..+...+.++.....  ....+......+.+|||||++.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4569999999999999999999999887655444332211  23344455688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+... .++.|+++|+||+|+...+.+  ..+....++..++.  +++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~  158 (170)
T 1z0j_A           84 IVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIHA--IFVETSAKNAININE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECCcccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCcCHHH
Confidence            9999999999999875 88888775 457999999999999865544  34456667766663  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      ++++|.+.+.
T Consensus       159 l~~~i~~~i~  168 (170)
T 1z0j_A          159 LFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999988753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.93  E-value=3.7e-25  Score=197.73  Aligned_cols=160  Identities=22%  Similarity=0.311  Sum_probs=128.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +.+||+++|++|||||||+++|+++.+...+.++.... .....+....+.+.+|||||++.+......+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            56899999999999999999999988766544433222 23334445567899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ||++++.+++.+.. |...+....  .++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l  156 (167)
T 1kao_A           82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWGC--PFMETSAKSKTMVDEL  156 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--CEEEECTTCHHHHHHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccC--CHHHHHHHHHHhCC--CEEEecCCCCcCHHHH
Confidence            99999999999886 766665532  47999999999999765554  33455667777663  7999999999999999


Q ss_pred             HHHHHHHH
Q 010548          168 FYYAQKAV  175 (507)
Q Consensus       168 ~~~i~~~i  175 (507)
                      +++|.+.+
T Consensus       157 ~~~l~~~~  164 (167)
T 1kao_A          157 FAEIVRQM  164 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=206.37  Aligned_cols=165  Identities=17%  Similarity=0.260  Sum_probs=128.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++++...+..+++.+|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            34469999999999999999999999887554433221 22 12233344458999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++..++. .++++|||++|.||+
T Consensus       106 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~  181 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPH-WIEDVRKYAGSNIVQLLIGNKSDLSELREV--SLAEAQSLAEHYDI-LCAIETSAKDSSNVE  181 (201)
T ss_dssp             EEEEETTBHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC-SEEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCcccccccc--CHHHHHHHHHHcCC-CEEEEEeCCCCCCHH
Confidence            99999999999999885 888887754 57999999999999865554  33456667777663 268999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      ++|++|.+.+..
T Consensus       182 ~l~~~l~~~i~~  193 (201)
T 2hup_A          182 EAFLRVATELIM  193 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.93  E-value=6.8e-25  Score=202.09  Aligned_cols=164  Identities=18%  Similarity=0.249  Sum_probs=133.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|++..+.....+......  ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            4578999999999999999999999887665443322111  22333444578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  .......++..++.  ++++|||++|.|+++
T Consensus        94 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLGI--PFLETSAKNATNVEQ  168 (196)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--CEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccc--CHHHHHHHHHHcCC--cEEEEeCCCCCCHHH
Confidence            9999999999999886 888887653 47999999999999876655  33456677777764  799999999999999


Q ss_pred             HHHHHHHHHcCC
Q 010548          167 VFYYAQKAVLHP  178 (507)
Q Consensus       167 l~~~i~~~i~~~  178 (507)
                      +|++|.+.+...
T Consensus       169 l~~~l~~~i~~~  180 (196)
T 3tkl_A          169 SFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.93  E-value=4.3e-25  Score=197.83  Aligned_cols=162  Identities=20%  Similarity=0.270  Sum_probs=130.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+++|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++++......+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            3578999999999999999999999887655443322 21 122333445679999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|||++++.+++.+.. |+..+.....+.|+++|+||+|+...+.+  ..+....++..++.  +++++||++|.|++++
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l  157 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLKL--RFYRTSVKEDLNVSEV  157 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECBTTTTBSSHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccCccccc--CHHHHHHHHHHcCC--eEEEEecCCCCCHHHH
Confidence            9999999999999886 88887765568999999999999765544  33455667777764  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      +++|.+.+.
T Consensus       158 ~~~l~~~~~  166 (168)
T 1z2a_A          158 FKYLAEKHL  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.93  E-value=3.3e-25  Score=201.60  Aligned_cols=164  Identities=17%  Similarity=0.170  Sum_probs=133.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +.+||+|+|++|||||||+++|+++.+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++|
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v   84 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV   84 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence            568999999999999999999998887666555433322 2233444568899999999999988899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ||++++.+++.+.. |...+....  .++|+++|+||+|+...+.+  ..+....++..++.  +++++||++|.|++++
T Consensus        85 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l  159 (181)
T 3t5g_A           85 YSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNA--AFLESSAKENQTAVDV  159 (181)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEECCTTSHHHHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhccee--cHHHHHHHHHHhCC--cEEEEecCCCCCHHHH
Confidence            99999999999986 887775542  37999999999999776655  44566777777764  7999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 010548          168 FYYAQKAVLHPT  179 (507)
Q Consensus       168 ~~~i~~~i~~~~  179 (507)
                      |+.|.+.+....
T Consensus       160 ~~~l~~~~~~~~  171 (181)
T 3t5g_A          160 FRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999886554

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=5.9e-25  Score=197.19  Aligned_cols=160  Identities=20%  Similarity=0.277  Sum_probs=128.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      +.+||+++|++|||||||+++|++..+.....++....  .....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999988765543332221  1223344556799999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCC---CCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      |||++++.++..+.. |+..+.... .++|+++|+||+|+...   +.+  ..+....++...+.  +++++||++|.|+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi  156 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDXLQEGGERKV--AREEGEKLAEEKGL--LFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHTC--EEEECCTTTCTTH
T ss_pred             EEecCChHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccccCC--CHHHHHHHHHHcCC--EEEEEeCCCCCCH
Confidence            999999999999886 887776653 57999999999999765   333  33455666666653  7999999999999


Q ss_pred             hHHHHHHHHHH
Q 010548          165 PDVFYYAQKAV  175 (507)
Q Consensus       165 ~~l~~~i~~~i  175 (507)
                      +++|++|.+.+
T Consensus       157 ~~l~~~l~~~i  167 (170)
T 1ek0_A          157 NDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.93  E-value=5.7e-25  Score=200.60  Aligned_cols=163  Identities=21%  Similarity=0.310  Sum_probs=130.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .++.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            4567999999999999999999999988766554433322 222344455678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.++..+.. |+..+....  .++|+++|+||+|+...+.+  ..+....+++.++.  ++++|||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           95 CVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNV--NYVETSAKTRANVD  169 (187)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHcCC--eEEEeCCCCCCCHH
Confidence            9999999999999876 877776653  37999999999999765544  33455666666663  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       170 ~l~~~l~~~i~  180 (187)
T 2a9k_A          170 KVFFDLMREIR  180 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=5.2e-25  Score=202.78  Aligned_cols=164  Identities=19%  Similarity=0.261  Sum_probs=132.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..+.+||+|+|++|||||||+++|++..+...+.++.....  ....+....+.+.+|||||++.+......+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            35579999999999999999999999887655444332221  2234445678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....+++.++.  ++++|||++|.|++
T Consensus       100 ilV~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKK-WVKELKEHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIGA--IVVETSAKNAINIE  174 (192)
T ss_dssp             EEEEETTCTHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTTC--EEEECBTTTTBSHH
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCcCHH
Confidence            99999999999999876 888887764 47999999999999764444  33456677777763  79999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      +++++|.+.+..
T Consensus       175 ~l~~~l~~~i~~  186 (192)
T 2fg5_A          175 ELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.93  E-value=2.4e-25  Score=209.73  Aligned_cols=172  Identities=16%  Similarity=0.264  Sum_probs=136.1

Q ss_pred             CCCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHH
Q 010548            1 MPGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNE   78 (507)
Q Consensus         1 m~~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   78 (507)
                      |.+|........+||+|+|++|||||||+++|+.+.+...+.++.....  ....+....+.+.+|||||++.+......
T Consensus         4 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   83 (221)
T 3gj0_A            4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG   83 (221)
T ss_dssp             --CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH
T ss_pred             cccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH
Confidence            4456666677789999999999999999999776665444333222111  33344556789999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +++.+|++|+|||++++.++..+.. |+..+.....++|+++|+||+|+.+....    .....++...+.  ++++|||
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~Sa  156 (221)
T 3gj0_A           84 YYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKNL--QYYDISA  156 (221)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHTC--EEEECBG
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcCC--EEEEEeC
Confidence            9999999999999999999999886 99998887778999999999999765433    234455555553  7999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC
Q 010548          159 TTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      ++|.||+++|++|.+.+....
T Consensus       157 ~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          157 KSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             GGTBTTTHHHHHHHHHHHTCT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc
Confidence            999999999999999886543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=202.53  Aligned_cols=163  Identities=21%  Similarity=0.310  Sum_probs=133.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .++.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++.+......+++.+|+++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            4567999999999999999999999988766655443322 233344455678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCC--CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.++..+.. |+..+.....  ++|+++|+||+|+...+.+  ..+....++..++.  +++++||++|.||+
T Consensus        91 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~  165 (206)
T 2bov_A           91 CVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWNV--NYVETSAKTRANVD  165 (206)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEECTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccc--cHHHHHHHHHHhCC--eEEEEeCCCCCCHH
Confidence            9999999999999876 8888776543  7999999999999875554  33455666666663  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       166 ~l~~~l~~~i~  176 (206)
T 2bov_A          166 KVFFDLMREIR  176 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.93  E-value=4.8e-25  Score=198.06  Aligned_cols=162  Identities=17%  Similarity=0.253  Sum_probs=124.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .+.+||+++|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            4579999999999999999999999887655433322 222 23344556788999999999988888888999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..++... .++|+++|+||+|+...+.+  ..+....+++.++.  +++++||++|.|+++
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~  158 (170)
T 1z08_A           84 LVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKERHV--SIQEAESYAESVGA--KHYHTSAKQNKGIEE  158 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEEEBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECccccccccc--CHHHHHHHHHHcCC--eEEEecCCCCCCHHH
Confidence            9999999999999885 888776643 47999999999999775554  33456667777763  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       159 l~~~l~~~~~  168 (170)
T 1z08_A          159 LFLDLCKRMI  168 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.93  E-value=6.1e-25  Score=203.04  Aligned_cols=165  Identities=19%  Similarity=0.212  Sum_probs=127.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCC-eeeCCcccCCceEEEEEeCCCCccchh-hhHHhhccCCE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADA   85 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~   85 (507)
                      ....+||+|+|++|||||||+++|++..+... .++.... ......++...+.+.+|||+|++.+.. +...+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            34579999999999999999999986543222 2222222 222334455578899999999987765 66788999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      +|+|||++++.+++.+.. |+..+....  .++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.|
T Consensus       100 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~a~~~~~--~~~e~Sa~~~~~  174 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLSC--KHIETSAALHHN  174 (195)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--EEEEEBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCc--CHHHHHHHHHHhCC--EEEEEcCCCCCC
Confidence            999999999999999886 888887653  37999999999999876555  33455667777763  799999999999


Q ss_pred             chHHHHHHHHHHcCC
Q 010548          164 VPDVFYYAQKAVLHP  178 (507)
Q Consensus       164 i~~l~~~i~~~i~~~  178 (507)
                      |+++|+.|.+.+...
T Consensus       175 v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          175 TRELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.3e-25  Score=206.63  Aligned_cols=166  Identities=18%  Similarity=0.190  Sum_probs=131.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+.+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++.+......+++.+|+++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            346799999999999999999999999877665443322 2233344456789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.+++.+.. |...+...  ..++|+++|+||+|+...+.+  .......++..++.  ++++|||++|.||+
T Consensus       101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~  175 (201)
T 3oes_A          101 LVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWGA--TFMESSARENQLTQ  175 (201)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECCTTCHHHHH
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCcccccc--CHHHHHHHHHHhCC--eEEEEeCCCCCCHH
Confidence            9999999999999986 88887664  247899999999999876555  34456677777764  79999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 010548          166 DVFYYAQKAVLHPT  179 (507)
Q Consensus       166 ~l~~~i~~~i~~~~  179 (507)
                      ++|+.|.+.+....
T Consensus       176 ~l~~~l~~~i~~~~  189 (201)
T 3oes_A          176 GIFTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.92  E-value=2.6e-25  Score=201.54  Aligned_cols=165  Identities=20%  Similarity=0.195  Sum_probs=128.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccC-CceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYP-DRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ..+.+||+|+|++|||||||+++|++..+...+.++. .... ....+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            3567999999999999999999999988654432222 1221 2223322 25899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCc-EEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLE---IKVP-IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      +++|||++++.+++.+.. |+..+....   .+.| +++|+||+|+...+.+  ..+....++..++.  ++++|||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENGF--SSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcCC--cEEEEeCCCC
Confidence            999999999999998875 888877632   1455 8999999999765544  33455667777663  7999999999


Q ss_pred             CCchHHHHHHHHHHcCC
Q 010548          162 IQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~~~  178 (507)
                      .||+++|++|.+.+...
T Consensus       158 ~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999987543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.92  E-value=4.4e-25  Score=198.26  Aligned_cols=160  Identities=19%  Similarity=0.214  Sum_probs=118.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-C-CCCCCeeeCCcccCCceEEEEEeCCCCccchh-hhHHhhccCCEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKV-P-PVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVVL   88 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il~   88 (507)
                      .+||+++|++|||||||+++|++..+.... + +..........+....+.+.+|||+|++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            479999999999999999999977654332 2 22222223344555678899999999988776 56677899999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCC--CCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~--~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.+++.+.. |+..+.....  ++|+++|+||+|+.+.+.+  ..+....+++.++.  ++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLSC--KHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccC--CHHHHHHHHHHcCC--cEEEecCccCCCHHH
Confidence            999999999999986 7777766543  7999999999999866555  34556677777764  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|+.|.+.+.
T Consensus       157 l~~~l~~~i~  166 (169)
T 3q85_A          157 LFEGAVRQIR  166 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=9e-25  Score=203.72  Aligned_cols=166  Identities=23%  Similarity=0.360  Sum_probs=130.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      +..+||+|+|++|||||||+++|++..+...+.++.. .......+....+.+.+|||||++.+......+++.+|++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            3468999999999999999999999887655433322 222223444456789999999999999888999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC------------CccchhhhhHHHHHHhcccCcEEEe
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH------------NATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      |||++++.+++.+...|...++...+++|+++|+||+|+....            .+  ..+....++..++. .++++|
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~  179 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPV--RTDDGRAMAVRIQA-YDYLEC  179 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCC--CHHHHHHHHHhcCC-CEEEEe
Confidence            9999999999999666999998877789999999999997641            12  23344556666653 268999


Q ss_pred             CcccCCCchHHHHHHHHHHcCC
Q 010548          157 SATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      ||++|.||+++|++|.+.++.+
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.92  E-value=8.4e-25  Score=201.30  Aligned_cols=163  Identities=18%  Similarity=0.201  Sum_probs=130.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+|+|++|||||||+++|++..+.....++... . +....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            445799999999999999999999998876554332221 1 13334445678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.++..+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++...+.  ++++|||++|.|++
T Consensus       102 i~v~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  176 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVER-WLKELYDHAEATIVVMLVGNKSDLSQAREV--PTEEARMFAENNGL--LFLETSALDSTNVE  176 (193)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHTTSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEEECTTTCTTHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECCCccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence            99999999999998886 888887653 47999999999999765544  33445666666653  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (193)
T 2oil_A          177 LAFETVLKEIF  187 (193)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.92  E-value=9.5e-25  Score=198.08  Aligned_cols=163  Identities=18%  Similarity=0.238  Sum_probs=130.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+.+||+|+|++|||||||+++|++..+...+.++.... .....+....+.+.+|||||++++......+++.+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            4567999999999999999999999988766655433322 222333444578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHH-Hhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPEL-RRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l-~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.++..+.. |+..+ +.. ..++|+++|+||+|+...+.+  ..+....++...+.  ++++|||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~  160 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHHV--AYFEASAKLRLNVD  160 (181)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHH
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccc--CHHHHHHHHHHcCC--eEEEecCCCCCCHH
Confidence            9999999999999886 77766 333 347999999999999775554  23445566666653  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       161 ~l~~~l~~~~~  171 (181)
T 2fn4_A          161 EAFEQLVRAVR  171 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.92  E-value=1.5e-24  Score=201.24  Aligned_cols=162  Identities=15%  Similarity=0.213  Sum_probs=132.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|++..+...+.++.....  ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            3568999999999999999999999887665444332111  22333455789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.|+++
T Consensus        86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~  160 (203)
T 1zbd_A           86 LMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLGF--EFFEASAKDNINVKQ  160 (203)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSSHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECcccCccccc--CHHHHHHHHHHCCC--eEEEEECCCCCCHHH
Confidence            9999999999999886 888887754 47999999999999876554  34556677777764  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       161 l~~~l~~~i~  170 (203)
T 1zbd_A          161 TFERLVDVIC  170 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=8.3e-25  Score=204.48  Aligned_cols=163  Identities=22%  Similarity=0.249  Sum_probs=122.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCcc-chhhhHHhhccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRAD   84 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad   84 (507)
                      ....+||+|+|++|||||||+++|++..  +...++++...+ .....++...+.+.+|||+|... +..+...+++.+|
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            3456999999999999999999999754  233334433332 23334445567889999999876 4445566788999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      ++|+|||++++.+|+.+.. |...+.+.  ..++|+|+|+||+|+...+.+ . .+....++..++.  ++++|||++|.
T Consensus       114 ~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~-~~e~~~~a~~~~~--~~~e~SAk~g~  188 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-S-VSEGRACAVVFDC--KFIETSAAVQH  188 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHTC--EEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceE-e-HHHHHHHHHHcCC--EEEEEeCCCCC
Confidence            9999999999999999886 88777653  247999999999999765555 2 3344556666653  79999999999


Q ss_pred             CchHHHHHHHHHHc
Q 010548          163 QVPDVFYYAQKAVL  176 (507)
Q Consensus       163 gi~~l~~~i~~~i~  176 (507)
                      ||+++|+.|.+.+.
T Consensus       189 ~v~elf~~l~~~i~  202 (211)
T 2g3y_A          189 NVKELFEGIVRQVR  202 (211)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.5e-24  Score=196.76  Aligned_cols=165  Identities=19%  Similarity=0.267  Sum_probs=124.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      ...+.+||+++|++|||||||+++|++..+... +.++. .... ....+....+.+.+|||||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            345679999999999999999999999887432 22222 2211 11233445678999999999999888889999999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      ++++|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....+++.++.  ++++|||++|.|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~g  160 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYGL--PFMETSAKTGLN  160 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHTC--CEEECCTTTCTT
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccCccccc--CHHHHHHHHHHcCC--eEEEEeCCCCCC
Confidence            9999999999999999876 888887754 47999999999999876554  33455667776663  799999999999


Q ss_pred             chHHHHHHHHHHcC
Q 010548          164 VPDVFYYAQKAVLH  177 (507)
Q Consensus       164 i~~l~~~i~~~i~~  177 (507)
                      ++++|++|.+.+..
T Consensus       161 i~~l~~~l~~~~~~  174 (180)
T 2g6b_A          161 VDLAFTAIAKELKR  174 (180)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=7.3e-25  Score=196.96  Aligned_cols=161  Identities=20%  Similarity=0.240  Sum_probs=127.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +.+||+++|++|||||||+++|+++.+...+.++....+ .........+.+.+|||||++++......+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            458999999999999999999999887655444433332 2233344567899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      ||++++.+++.+.. |...+.+.   .+++|+++|+||+|+...+.+  .......++..++.  +++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV--QSSEAEALARTWKC--AFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEcccccccccc--CHHHHHHHHHHhCC--eEEEecCCCCcCHHH
Confidence            99999999988876 76666653   247999999999999765554  23345556666653  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      ++++|.+.+.
T Consensus       157 l~~~l~~~~~  166 (172)
T 2erx_A          157 LFQELLNLEK  166 (172)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.92  E-value=8.9e-25  Score=197.87  Aligned_cols=162  Identities=18%  Similarity=0.251  Sum_probs=128.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      +++.+||+|+|++|||||||+++|++..+.....+... .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999998887655433222 11 12233344567899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ++|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  ..+....++...+.  ++++|||++|.|++
T Consensus        91 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~  165 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNV--MFIETSAKAGYNVK  165 (179)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEEEBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCcccccCcC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHH
Confidence            99999999999998876 87777654 347999999999999765554  23445556666653  79999999999999


Q ss_pred             HHHHHHHHHH
Q 010548          166 DVFYYAQKAV  175 (507)
Q Consensus       166 ~l~~~i~~~i  175 (507)
                      +++++|.+.+
T Consensus       166 ~l~~~l~~~~  175 (179)
T 2y8e_A          166 QLFRRVAAAL  175 (179)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.92  E-value=2.3e-24  Score=200.59  Aligned_cols=163  Identities=17%  Similarity=0.270  Sum_probs=131.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+|+|++|||||||+++|++..+...+.++. .... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            3557999999999999999999999988765543322 2222 2233444567899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.++..+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++...+.  +++++||++|.||+
T Consensus        85 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANKM--PFLETSALDSTNVE  159 (206)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--CEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHH
Confidence            99999999999999886 888887653 47999999999999876554  33455666666663  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       160 ~l~~~l~~~i~  170 (206)
T 2bcg_Y          160 DAFLTMARQIK  170 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.92  E-value=1.8e-24  Score=195.79  Aligned_cols=164  Identities=21%  Similarity=0.266  Sum_probs=126.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+++|++|||||||+++|++..+.....++.....  ....+....+.+.+|||||++.+......+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            34579999999999999999999999887655433322111  2223344457999999999999999899999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      ++|||++++.+++.+.. |...+....     .++|+++|+||+|+.. +..  ..+....++..... .++++|||++|
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~  158 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-RQV--STEEAQAWCRDNGD-YPYFETSAKDA  158 (177)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS--CHHHHHHHHHHTTC-CCEEECCTTTC
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCcccc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence            99999999999999875 888776532     4789999999999973 333  23445556653433 27999999999


Q ss_pred             CCchHHHHHHHHHHcC
Q 010548          162 IQVPDVFYYAQKAVLH  177 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~~  177 (507)
                      .|++++|++|.+.+..
T Consensus       159 ~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          159 TNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=1.2e-24  Score=201.02  Aligned_cols=165  Identities=18%  Similarity=0.224  Sum_probs=121.6

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccC
Q 010548            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA   83 (507)
Q Consensus         5 ~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   83 (507)
                      ..+......||+|+|++|||||||+++|++..+.. .+.++......  .+....+.+.+|||||++.+...+..+++.+
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            33445668999999999999999999999998876 44443332221  2346688999999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHhHHHHHHhc------C---CCCcEEEEEecccCCCCCCccchhhhhHHHH-----HHhcc
Q 010548           84 DAVVLTYACNQQSTLSRLSSYWLPELRRL------E---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-----QQFRE  149 (507)
Q Consensus        84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~------~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~  149 (507)
                      |++|+|||++++.++..+.. |+..+...      .   .++|+++|+||+|+......   .+....+.     ...+ 
T Consensus        88 d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~-  162 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---AELVEILDLTTLMGDHP-  162 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---HHHHHHHTHHHHHTTSC-
T ss_pred             CEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---HHHHHHhcchhhccCCe-
Confidence            99999999999999999986 66655432      1   27999999999999875332   11111111     2222 


Q ss_pred             cCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          150 IETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       150 ~~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                       .++++|||++|.||+++|++|.+.+..
T Consensus       163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          163 -FVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             -EEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             -eEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence             278999999999999999999987743

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=201.36  Aligned_cols=163  Identities=18%  Similarity=0.271  Sum_probs=124.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..+.+||+|+|++|||||||+++|++..+...+.++.. .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            34579999999999999999999999887554333222 11 12334445568899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCC------CCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRG------DHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      |+|||++++.+++.+.. |+..++... .++|+++|+||+|+..      .+.+  ..+....++..++.  ++++|||+
T Consensus       105 ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~~~~~~--~~~~~SA~  179 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLAMTYGA--LFCETSAK  179 (199)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHHHHHTC--EEEECCTT
T ss_pred             EEEEECCChHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccccccccccccccc--CHHHHHHHHHHcCC--eEEEeeCC
Confidence            99999999999999886 888887653 4799999999999962      2333  34455667777664  79999999


Q ss_pred             cCCCchHHHHHHHHHHc
Q 010548          160 TMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~  176 (507)
                      +|.||+++|++|.+.+.
T Consensus       180 ~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999998774

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=2e-25  Score=205.25  Aligned_cols=162  Identities=17%  Similarity=0.222  Sum_probs=132.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++.+......+++.+|++|
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            3468999999999999999999999887655333221 11 133344566789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.||++
T Consensus       101 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          101 LMYDITNEESFNAVQD-WATQIKTYSWDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLGF--DFFEASAKENISVRQ  175 (191)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHHH
Confidence            9999999999999886 998888754 57999999999999766554  34556677777764  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       176 l~~~l~~~i~  185 (191)
T 3dz8_A          176 AFERLVDAIC  185 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.6e-24  Score=200.11  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=129.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+.+||+|+|++|||||||+++|++..+...+.++... ......+....+.+.+|||||++. ......+++.+|++++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil  104 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL  104 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence            56799999999999999999999998876665443332 222234445578899999999887 6777889999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC-Cch
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVP  165 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~  165 (507)
                      |||++++.+++.+.. |+..+...  ..++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|. |++
T Consensus       105 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~g~~gi~  179 (196)
T 2atv_A          105 VYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELAC--AFYECSACTGEGNIT  179 (196)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--EEEECCTTTCTTCHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECccccccccc--CHHHHHHHHHHhCC--eEEEECCCcCCcCHH
Confidence            999999999999886 88777653  247999999999999775554  33455667777653  79999999999 999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (196)
T 2atv_A          180 EIFYELCREVR  190 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.92  E-value=3.5e-25  Score=201.83  Aligned_cols=162  Identities=15%  Similarity=0.279  Sum_probs=102.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|++..+.....++.. ... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4579999999999999999999998876544222111 111 22233344589999999999998888889999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.||++
T Consensus        86 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~  160 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYGI--KFMETSAKANINVEN  160 (183)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHTC--EEEECCC---CCHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence            9999999999999886 88888765 347999999999999876554  34456677777763  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       161 l~~~l~~~i~  170 (183)
T 2fu5_C          161 AFFTLARDIK  170 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.92  E-value=1.6e-24  Score=198.72  Aligned_cols=162  Identities=19%  Similarity=0.323  Sum_probs=126.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccch-hhhHHhhccCCE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADA   85 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~   85 (507)
                      .++.+||+|+|++|||||||+++|+++.+.....++.. ... ....+....+.+.+|||||++.+. ..+..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            34579999999999999999999999887655433222 221 223344456899999999998887 788899999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC--
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM--  161 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g--  161 (507)
                      +|+|||++++.+++.+.. |+..+...  ..++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|  
T Consensus        97 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~~  171 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHSM--PLFETSAKNPND  171 (189)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEECCSSSGGG
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccee--CHHHHHHHHHHcCC--EEEEEeCCcCCc
Confidence            999999999999999886 88887765  357999999999999765554  33456667777663  7999999999  


Q ss_pred             -CCchHHHHHHHHHH
Q 010548          162 -IQVPDVFYYAQKAV  175 (507)
Q Consensus       162 -~gi~~l~~~i~~~i  175 (507)
                       .||+++|++|.+.+
T Consensus       172 ~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          172 NDHVEAIFMTLAHKL  186 (189)
T ss_dssp             GSCHHHHHHHHC---
T ss_pred             ccCHHHHHHHHHHHH
Confidence             99999999987765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.92  E-value=2.1e-24  Score=193.70  Aligned_cols=160  Identities=16%  Similarity=0.295  Sum_probs=126.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+++|++|||||||+++|++..+.....+ ...... ....+....+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            358999999999999999999999887554333 222222 223344556889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |||++++.+++.+.. |+..+.... .++|+++|+||+|+.. +..  ..+....+++.++.  +++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELGI--PFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTT-CCS--CHHHHHHHHHHHTC--CEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCCc-Ccc--CHHHHHHHHHHcCC--eEEEEECCCCCCHHHH
Confidence            999999999998876 888877654 4799999999999943 233  34456667777763  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |++|.+.+.
T Consensus       156 ~~~l~~~~~  164 (170)
T 1g16_A          156 FFTLAKLIQ  164 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998774

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.92  E-value=4.5e-24  Score=190.31  Aligned_cols=160  Identities=21%  Similarity=0.329  Sum_probs=129.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +.+||+++|++|||||||+++|++..+.....++... ......+....+.+.+|||||++++......+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            4589999999999999999999998876554443322 223333445567899999999999888899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ||++++.++..+.. |...+....  .++|+++|+||+|+... ..  ..+....++..++.  +++++||++|.|++++
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l  155 (166)
T 2ce2_X           82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAAR-TV--ESRQAQDLARSYGI--PYIETSAKTRQGVEDA  155 (166)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHTC--CEEEECTTTCTTHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhhc-cc--CHHHHHHHHHHcCC--eEEEecCCCCCCHHHH
Confidence            99999999999875 888877653  37999999999999763 22  34556677777764  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      +++|.+.+.
T Consensus       156 ~~~l~~~~~  164 (166)
T 2ce2_X          156 FYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.92  E-value=1.5e-24  Score=196.89  Aligned_cols=165  Identities=18%  Similarity=0.261  Sum_probs=117.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-C-eeeCCccc-CCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-P-TRLPPDFY-PDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~-~t~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ..+.+||+++|++|||||||+++|++..+...+.++.. . ......+. ...+.+.+|||||++.+......+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            34679999999999999999999999887655433222 1 12223333 346789999999999988888899999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      +|+|||++++.+++.+.. |+..+....     .++|+++|+||+|+...... ...+....++..... .++++|||++
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~-~~~~~~Sa~~  161 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGD-IPLFLTSAKN  161 (182)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTS-CCEEEEBTTT
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHHhcCC-CeEEEEecCC
Confidence            999999999999999876 887776532     47999999999999644322 234455666664433 3799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 010548          161 MIQVPDVFYYAQKAVL  176 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~  176 (507)
                      |.|++++|++|.+.+.
T Consensus       162 ~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          162 AINVDTAFEEIARSAL  177 (182)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.92  E-value=1.8e-24  Score=197.58  Aligned_cols=163  Identities=22%  Similarity=0.258  Sum_probs=129.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..+.+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            45679999999999999999999999887655433222 11 12223334457899999999999999899999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  .......++...+.  ++++|||++|.|++
T Consensus        87 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           87 LLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDADREV--TFLEASRFAQENEL--MFLETSALTGENVE  161 (186)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEecCCCCCCHH
Confidence            99999999999999886 88877664 357999999999999765544  23445566666653  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       162 ~l~~~l~~~~~  172 (186)
T 2bme_A          162 EAFVQCARKIL  172 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.92  E-value=4.8e-24  Score=194.97  Aligned_cols=161  Identities=20%  Similarity=0.310  Sum_probs=128.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+.+||+|+|++|||||||+|+|++..+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            3568999999999999999999999887666555443222 333344556789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.+++.+.. |...+...  ..++|+++|+||+|+.....   ..+....++..++.  ++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---~~~~~~~~~~~~~~--~~~~~Sa~~g~gi~~  155 (189)
T 4dsu_A           82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSRTV---DTKQAQDLARSYGI--PFIETSAKTRQGVDD  155 (189)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSCSS---CHHHHHHHHHHHTC--CEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCccccc---CHHHHHHHHHHcCC--eEEEEeCCCCCCHHH
Confidence            999999999999886 87777664  24799999999999974322   34556777777764  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       156 l~~~l~~~~~  165 (189)
T 4dsu_A          156 AFYTLVREIR  165 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.92  E-value=2.8e-24  Score=197.11  Aligned_cols=164  Identities=20%  Similarity=0.306  Sum_probs=120.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ...++.+||+++|.+|||||||+++|+++.+...+.++... ......+....+.+.+|||||++.+......+++.+|+
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            34566799999999999999999999998876554443322 12223344456789999999999888888999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      +++|||++++.++..+.. |...+....  .++|+++|+||+|+... ..  ..+....+++.++.  ++++|||++|.|
T Consensus        96 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~g  169 (190)
T 3con_A           96 FLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPTR-TV--DTKQAHELAKSYGI--PFIETSAKTRQG  169 (190)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSCC-CS--CHHHHHHHHHHHTC--CEEECCTTTCTT
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCcc-cC--CHHHHHHHHHHcCC--eEEEEeCCCCCC
Confidence            999999999999999875 888777643  37999999999999762 22  34556677777764  799999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      +++++++|.+.+.
T Consensus       170 i~~l~~~l~~~~~  182 (190)
T 3con_A          170 VEDAFYTLVREIR  182 (190)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.92  E-value=9.3e-24  Score=195.32  Aligned_cols=160  Identities=16%  Similarity=0.260  Sum_probs=125.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-ee-eCCcccCCc-----------------------------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TR-LPPDFYPDR-----------------------------   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t-~~~~~~~~~-----------------------------   58 (507)
                      .+.+||+|+|++|||||||+++|++..+...+.++... .. ....+....                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            45799999999999999999999999876554443321 11 111222212                             


Q ss_pred             --------eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           59 --------VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        59 --------~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                              ..+.+|||||++.+......+++.+|++|+|||++++.++..+.. |+..+.... ++|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS-NYIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS-CCEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC-CCcEEEEEECCC-ccc
Confidence                    889999999999999999999999999999999999999999875 888887754 499999999999 433


Q ss_pred             CCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +..  ..+....++...+.  ++++|||++|.|++++|++|.+.+.
T Consensus       162 ~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          162 FQV--DILEVQKYAQDNNL--LFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             CCS--CHHHHHHHHHHTTC--EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             ccC--CHHHHHHHHHHcCC--cEEEEecCCCCCHHHHHHHHHHHHH
Confidence            333  33456667776653  7999999999999999999988763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.92  E-value=8.7e-25  Score=201.31  Aligned_cols=164  Identities=16%  Similarity=0.130  Sum_probs=123.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC------CCee-------eCC-cccCCceEEEEEeCCCCcc
Q 010548            6 GSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH------APTR-------LPP-DFYPDRVPVTIIDTSSSLE   71 (507)
Q Consensus         6 ~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~------~~~t-------~~~-~~~~~~~~~~i~Dt~G~~~   71 (507)
                      .......+||+|+|++|||||||++.+.+. +...+.+..      ...|       ... .+....+.+.+|||||++.
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            334456799999999999999999766654 333321110      0111       112 3445678999999999999


Q ss_pred             chhhhHHhhccCCEEEEEEeCC------ChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHH
Q 010548           72 NKGKLNEELKRADAVVLTYACN------QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ  145 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~------~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~  145 (507)
                      +...+..+++.+|++|+|||++      +..++..+.. |+..++....++|+++|+||+|+.+..    ..++...++.
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~  161 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGLTLDDVPIVIQVNKRDLPDAL----PVEMVRAVVD  161 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTCCTTSSCEEEEEECTTSTTCC----CHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhccccCCCCEEEEEEchhccccc----CHHHHHHHHH
Confidence            9999999999999999999999      5566777664 777775555689999999999997652    3345666676


Q ss_pred             HhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          146 QFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       146 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      .++. .++++|||++|.|++++|++|.+.+.
T Consensus       162 ~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          162 PEGK-FPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             TTCC-SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             hcCC-ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            6663 26999999999999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.5e-24  Score=201.04  Aligned_cols=162  Identities=21%  Similarity=0.259  Sum_probs=123.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            4579999999999999999999999887554333221 21 122333444589999999999888888999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+... ..++|+++|+||+|+...+.+  .......++...+.  ++++|||++|.||++
T Consensus       103 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~SA~~g~gi~~  177 (200)
T 2o52_A          103 LVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDPEREV--TFLEASRFAQENEL--MFLETSALTGENVEE  177 (200)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHTCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEEECTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHH
Confidence            9999999999999886 88877664 357999999999999765544  23445566666653  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       178 l~~~l~~~i~  187 (200)
T 2o52_A          178 AFLKCARTIL  187 (200)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=4.5e-24  Score=196.31  Aligned_cols=163  Identities=18%  Similarity=0.257  Sum_probs=130.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .+.+||+|+|++|||||||+++|++..+...+.++.....  ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            4568999999999999999999999887655444322111  22344455789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.++..+.. |+..+....  .++|+++|+||+|+... .+  ..+....++...+.  ++++|||++|.|++
T Consensus        93 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  166 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKENR-EV--DRNEGLKFARKHSM--LFIEASAKTCDGVQ  166 (195)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSSC-CS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCccc-cc--CHHHHHHHHHHcCC--EEEEecCCCCCCHH
Confidence            9999999999999885 888887753  47999999999999542 22  23445666666653  69999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 010548          166 DVFYYAQKAVLHP  178 (507)
Q Consensus       166 ~l~~~i~~~i~~~  178 (507)
                      ++|++|.+.+...
T Consensus       167 ~l~~~l~~~~~~~  179 (195)
T 1x3s_A          167 CAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.91  E-value=6.9e-25  Score=203.91  Aligned_cols=161  Identities=16%  Similarity=0.189  Sum_probs=97.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCC-C-eeeCCcccCC--ceEEEEEeCCCCccchhhhHHhhccCC
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHA-P-TRLPPDFYPD--RVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~-~-~t~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      ..+||+|+|++|||||||+++|++.  .+...+.++.. . ......+...  .+.+.+|||||++.+...+..+++.+|
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            4589999999999999999999988  66544444332 1 1122333344  689999999999988888889999999


Q ss_pred             EEEEEEeCCChhhHHHHHHhHHHHHHhcCC----CCcEEEEEecccCCC-CCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           85 AVVLTYACNQQSTLSRLSSYWLPELRRLEI----KVPIIVAGCKLDLRG-DHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        85 ~il~V~D~~~~~s~~~~~~~~~~~l~~~~~----~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++|+|||++++.+++.+.. |+..+.....    ++|+++|+||+|+.. .+.+  ..+....++..++.  ++++|||+
T Consensus        99 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~  173 (208)
T 2yc2_C           99 YAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWATTNTL--DFFDVSAN  173 (208)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHHHTTC--EEEECCC-
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHHHcCC--EEEEeccC
Confidence            9999999999999999885 9988887543    799999999999987 5544  34556777777763  79999999


Q ss_pred             c-CCCchHHHHHHHHHHc
Q 010548          160 T-MIQVPDVFYYAQKAVL  176 (507)
Q Consensus       160 ~-g~gi~~l~~~i~~~i~  176 (507)
                      + |.|++++|++|.+.+.
T Consensus       174 ~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          174 PPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             ------CHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            9 9999999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.91  E-value=6.2e-24  Score=190.95  Aligned_cols=163  Identities=13%  Similarity=0.124  Sum_probs=121.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+.+||+++|++|||||||+++|+++.+....++. .....  .+...+..+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~-~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTI-GFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCS-SEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcC-ccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            3456799999999999999999999988875433332 11111  22234789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-c-ccCcEEEeCcccCCC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQ  163 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~g~g  163 (507)
                      +|||++++.++..+.. |+..+...  ..++|+++|+||+|+......   .+....+.... . ...++++|||++|.|
T Consensus        80 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (171)
T 1upt_A           80 YVVDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGTG  155 (171)
T ss_dssp             EEEETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCceEEEECcCCCCcC
Confidence            9999999999998886 55554432  247999999999999765322   11111111111 0 012689999999999


Q ss_pred             chHHHHHHHHHHcC
Q 010548          164 VPDVFYYAQKAVLH  177 (507)
Q Consensus       164 i~~l~~~i~~~i~~  177 (507)
                      +++++++|.+.+..
T Consensus       156 i~~l~~~l~~~i~~  169 (171)
T 1upt_A          156 LDEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987743

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.4e-24  Score=201.48  Aligned_cols=164  Identities=20%  Similarity=0.219  Sum_probs=127.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|++..+.....++. .... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            456999999999999999999999988765533322 2222 22334444589999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++..++.  +++++||++|.||++
T Consensus        91 lV~D~~~~~s~~~~~~-~l~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~  165 (223)
T 3cpj_B           91 IVYDISKSSSYENCNH-WLSELRENADDNVAVGLIGNKSDLAHLRAV--PTEESKTFAQENQL--LFTETSALNSENVDK  165 (223)
T ss_dssp             EEEC-CCHHHHHHHHH-HHHHHHHHCC--CEEEEEECCGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCCC-CCCHHH
T ss_pred             EEEeCCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHH
Confidence            9999999999999886 888887653 47999999999999865554  23455666766653  799999999999999


Q ss_pred             HHHHHHHHHcCC
Q 010548          167 VFYYAQKAVLHP  178 (507)
Q Consensus       167 l~~~i~~~i~~~  178 (507)
                      +|++|.+.+...
T Consensus       166 l~~~l~~~i~~~  177 (223)
T 3cpj_B          166 AFEELINTIYQK  177 (223)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.91  E-value=5.9e-24  Score=189.85  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=117.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +||+++|++|||||||+++|+++.+....++.....   ..+...++.+.+|||||++.+...+..+++.+|++++|||+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   77 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE---EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE---EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999888765433322111   12334678999999999999998889999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-c-ccCcEEEeCcccCCCchHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~g~gi~~l~  168 (507)
                      +++.++..+.. |+..+...  ..++|+++|+||+|+......   .+....+.... . ...++++|||++|.|++++|
T Consensus        78 ~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           78 NDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            99999999886 66665442  247999999999999764221   11111111110 0 11258999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      ++|.+.+.
T Consensus       154 ~~l~~~i~  161 (164)
T 1r8s_A          154 DWLSNQLR  161 (164)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99988753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.91  E-value=1.2e-24  Score=204.25  Aligned_cols=167  Identities=16%  Similarity=0.241  Sum_probs=127.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--c-CCceEEEEEeCCCCccchhhhHHhhccCCE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--Y-PDRVPVTIIDTSSSLENKGKLNEELKRADA   85 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~--~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~   85 (507)
                      ....+||+|+|++|||||||+|+|++..+...+.++.........+  . ...+.+.+|||||++.+......+++.+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4567999999999999999999999888765444433322222221  1 223789999999999999899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      +|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++...+.  ++++|||++|.|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~~~Sa~~g~gv  162 (218)
T 4djt_A           88 AILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGKNY--EYFEISAKTAHNF  162 (218)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCSSSCEEEEEECTTCC----C--CHHHHHHHTTTCCC--EEEEEBTTTTBTT
T ss_pred             EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcCC--cEEEEecCCCCCH
Confidence            999999999999999885 888877653 35899999999999875444  33444455555543  7999999999999


Q ss_pred             hHHHHHHHHHHcCCCC
Q 010548          165 PDVFYYAQKAVLHPTA  180 (507)
Q Consensus       165 ~~l~~~i~~~i~~~~~  180 (507)
                      +++|++|.+.+.....
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          163 GLPFLHLARIFTGRPD  178 (218)
T ss_dssp             THHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999999866544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.91  E-value=5.9e-24  Score=197.64  Aligned_cols=163  Identities=21%  Similarity=0.263  Sum_probs=126.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe--eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT--RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ..+.+||+|+|++|||||||+++|++..+...+.++....  .....+....+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            4567999999999999999999999988765544433211  12333445568999999999999988888999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      |+|||++++.++..+.. |+..+....     .++|+++|+||+|+.. +..  ..+....++..... .+++++||++|
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~g  159 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQV--ATKRAQAWCYSKNN-IPYFETSAKEA  159 (207)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCS--CHHHHHHHHHHTTS-CCEEECBTTTT
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCcc-ccc--CHHHHHHHHHhcCC-ceEEEEeCCCC
Confidence            99999999999999875 887766542     3789999999999973 232  23444555553332 27999999999


Q ss_pred             CCchHHHHHHHHHHc
Q 010548          162 IQVPDVFYYAQKAVL  176 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~  176 (507)
                      .|++++|++|.+.+.
T Consensus       160 ~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          160 INVEQAFQTIARNAL  174 (207)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998774

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.91  E-value=4.1e-24  Score=197.92  Aligned_cols=157  Identities=18%  Similarity=0.268  Sum_probs=113.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++|.++.+....++ .....  ..+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t-~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPTS--EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL   99 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CC-CCCSC--EEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCC-CCcee--EEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence            4568999999999999999999998876432222 22211  12233458999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc---------------ccCc
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------------EIET  152 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~  152 (507)
                      ||++++.+++.+.. |+..+.+.  ..++|+++|+||+|+...  .  ..+..........               ...+
T Consensus       100 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (198)
T 1f6b_A          100 VDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPEA--I--SEERLREMFGLYGQTTGKGSVSLKELNARPLE  174 (198)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTTC--C--CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             EECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCcccc--C--CHHHHHHHhCcccccccccccccccccCceEE
Confidence            99999999999886 77666543  247999999999999762  2  2233333333211               1236


Q ss_pred             EEEeCcccCCCchHHHHHHHHH
Q 010548          153 CVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      +++|||++|.||+++|++|.+.
T Consensus       175 ~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          175 VFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=4.7e-24  Score=196.95  Aligned_cols=164  Identities=19%  Similarity=0.235  Sum_probs=129.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ...+||+|+|++|||||||+++|++..+...+.++..... ....+....+.+.+|||||++.+......+++.+|++++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            4569999999999999999999999887655444433322 223334556789999999999999889999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |||++++.+++.+.. |+..+...   .+++|+++|+||+|+... .+  ..+....++..++.  ++++|||++|.|++
T Consensus        86 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A           86 VFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQR-EV--DTREAQAVAQEWKC--AFMETSAKMNYNVK  159 (199)
T ss_dssp             EEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSSC-SS--CHHHHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCcc-cc--CHHHHHHHHHHhCC--eEEEEecCCCCCHH
Confidence            999999999998876 66666543   237899999999999753 22  23445566666663  69999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 010548          166 DVFYYAQKAVLHPT  179 (507)
Q Consensus       166 ~l~~~i~~~i~~~~  179 (507)
                      +++++|.+.+....
T Consensus       160 ~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          160 ELFQELLTLETRRN  173 (199)
T ss_dssp             HHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999875543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1e-23  Score=196.97  Aligned_cols=162  Identities=15%  Similarity=0.282  Sum_probs=126.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+||+|+|++|||||||+++|++..+.....+... ... ....+....+.+.+|||||++.+...+..+++.+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45579999999999999999999999887554333222 222 2223334457899999999999998999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.. +..  ..+....++..++.  ++++|||++|.||+
T Consensus        97 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~  170 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMET-RVV--TADQGEALAKELGI--PFIESSAKNDDNVN  170 (213)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHTTTCSEEEEEEECTTCSS-CCS--CHHHHHHHHHHHTC--CEEECBTTTTBSSH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCEEEEEECCCCcc-ccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHH
Confidence            99999999999998875 888877654 3699999999999943 333  33455667777663  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       171 ~l~~~l~~~~~  181 (213)
T 3cph_A          171 EIFFTLAKLIQ  181 (213)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.91  E-value=2.2e-24  Score=196.56  Aligned_cols=160  Identities=11%  Similarity=0.126  Sum_probs=115.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ....+.+||+|+|++|||||||+++|+++.+....++ ......  .+..++..+.+|||||++.+...+..+++.+|++
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   92 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFV   92 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECC-SSSSCE--EEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCc-CceeeE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3445689999999999999999999999887222222 111111  2223568999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHH-HH-hc-ccCcEEEeCcccC
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-QQ-FR-EIETCVECSATTM  161 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~SA~~g  161 (507)
                      ++|||++++.+++.+.. |+..+.+.  ..++|+++|+||+|+......    +...... .. .. ...++++|||++|
T Consensus        93 i~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           93 IVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV----AEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             EEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccCCCH----HHHHHHhCcccccCCceEEEEccCCCC
Confidence            99999999999999886 66555443  358999999999999764222    1111111 11 01 1126899999999


Q ss_pred             CCchHHHHHHHHH
Q 010548          162 IQVPDVFYYAQKA  174 (507)
Q Consensus       162 ~gi~~l~~~i~~~  174 (507)
                      .|++++|++|.+.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999998753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=6.2e-24  Score=194.83  Aligned_cols=161  Identities=15%  Similarity=0.187  Sum_probs=121.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ++.+||+|+|++|||||||+++|++..+...+.++......  .+...++.+.+|||||++++...+..+++.+|++|+|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   97 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence            45799999999999999999999998876544432222211  2345678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   .+....+....  ....++++|||++|.||+
T Consensus        98 ~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           98 VDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            99999999999886 66555442  248999999999999764221   11111111110  011268999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       174 ~l~~~l~~~~~  184 (188)
T 1zd9_A          174 ITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=6.5e-24  Score=194.37  Aligned_cols=164  Identities=12%  Similarity=0.108  Sum_probs=117.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++|+++.+....++ ......  .+..+++.+.+|||||++++...+..+++.+|++++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNVE--EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SCSSCE--EEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCC-CccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4579999999999999999999998876522222 111111  2223468999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-hc-ccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.+++.+.. |+..+.+.  ..++|+++|+||+|+......   ++....+... +. ...++++|||++|.|++
T Consensus        91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           91 VDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            99999999999886 77666553  248999999999999764221   1211111111 11 11268999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q 010548          166 DVFYYAQKAVLHPTA  180 (507)
Q Consensus       166 ~l~~~i~~~i~~~~~  180 (507)
                      +++++|.+.+..+..
T Consensus       167 ~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLE  181 (187)
T ss_dssp             HHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998865543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.91  E-value=8.2e-24  Score=194.52  Aligned_cols=157  Identities=13%  Similarity=0.228  Sum_probs=117.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||++++.++.+... .++......  .+..+++.+.+|||||++.+...+..+++.+|++++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   97 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   97 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-CCCCSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-ccCCCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            4568999999999999999999999886533 332222222  2233458999999999999998888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc----------ccCcEEEeC
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR----------EIETCVECS  157 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~S  157 (507)
                      ||++++.+++.+.. |+..+.+.  ..++|+++|+||+|+...  .  ..++.........          ...++++||
T Consensus        98 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  172 (190)
T 1m2o_B           98 VDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA--V--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  172 (190)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC--C--CHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred             EECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcCC--C--CHHHHHHHhCCccccccccccccceEEEEEeE
Confidence            99999999999886 77666542  247999999999999762  2  1222222222110          123699999


Q ss_pred             cccCCCchHHHHHHHHH
Q 010548          158 ATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~  174 (507)
                      |++|.||+++|++|.+.
T Consensus       173 a~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          173 VVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTTBSHHHHHHHHHTT
T ss_pred             CCcCCCHHHHHHHHHhh
Confidence            99999999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.91  E-value=1.2e-23  Score=193.73  Aligned_cols=162  Identities=22%  Similarity=0.261  Sum_probs=119.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCcc-chhhhHHhhccCCE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLE-NKGKLNEELKRADA   85 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~ad~   85 (507)
                      ...+||+|+|++|||||||+|+|++..  +...++++...+ .....++...+.+.+|||+|... +..+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            346899999999999999999999643  333333332222 23334455567889999999875 45566778899999


Q ss_pred             EEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           86 VVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      +++|||++++.||+.+.. |...+...  ..++|+++|+||+|+...+.+ . .+....++..++.  ++++|||++|.|
T Consensus        84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~-~~~~~~~a~~~~~--~~~e~SA~~g~~  158 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREV-S-VSEGRAXAVVFDX--KFIETSAAVQHN  158 (192)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-C-HHHHHHHHHHTTC--EEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccc-c-HHHHHHHHHHhCC--ceEEeccccCCC
Confidence            999999999999999886 87777653  247999999999999765444 2 2334455555553  699999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      |+++|+.|.+.+.
T Consensus       159 v~~lf~~l~~~~~  171 (192)
T 2cjw_A          159 VKELFEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998763

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.91  E-value=8.7e-24  Score=194.06  Aligned_cols=160  Identities=14%  Similarity=0.212  Sum_probs=119.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+.+||+|+|++|||||||+++|++.. +...+.++......  .+..++..+.+|||||++.+...+..+++.+|++|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE--EEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            4567999999999999999999999887 44444433322212  22334689999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHH--HHhc-ccCcEEEeCccc
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIM--QQFR-EIETCVECSATT  160 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~SA~~  160 (507)
                      +|||++++.++..+.. |+..+....    .++|+++|+||+|+......    +......  ..+. ...++++|||++
T Consensus        96 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS----VKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH----HHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccCCCH----HHHHHHhChhhccCCceEEEEccCCC
Confidence            9999999999999886 666555432    47999999999999764222    2222222  1111 112689999999


Q ss_pred             CCCchHHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKAV  175 (507)
Q Consensus       161 g~gi~~l~~~i~~~i  175 (507)
                      |.||+++|++|.+.+
T Consensus       171 ~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          171 GEGLQEGVDWLQDQI  185 (190)
T ss_dssp             TBTHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=1.2e-23  Score=192.26  Aligned_cols=161  Identities=12%  Similarity=0.143  Sum_probs=120.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++++++. ...+.++......  .+..++..+.+|||||++++...+..+++.+|++++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK--TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   92 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE--EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            567999999999999999999999887 3333333222212  2223578999999999999988899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-h-cccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-F-REIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.+++.+.. |+..+.+.  ..++|+++|+||+|+......   .+....+... . ....++++|||++|.|++
T Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           93 VDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            99999999999886 66655443  247999999999999765322   1111111110 0 111268999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      +++++|.+.+..
T Consensus       169 ~l~~~l~~~i~~  180 (186)
T 1ksh_A          169 PGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.90  E-value=2.8e-24  Score=201.67  Aligned_cols=162  Identities=16%  Similarity=0.237  Sum_probs=127.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCC----------ceEEEEEeCCCCccchhhhH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPD----------RVPVTIIDTSSSLENKGKLN   77 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~----------~~~~~i~Dt~G~~~~~~~~~   77 (507)
                      ...+||+|+|++|||||||+++|++..+...+.++.. .+. ....+...          .+.+.+|||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            4569999999999999999999999886443222111 111 11222333          67899999999998888899


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      .+++.+|++|+|||++++.+++.+.. |+..+....  .++|+++|+||+|+...+.+  ..+....++..++.  ++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~  177 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYGI--PYFE  177 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCcccccccc--CHHHHHHHHHHCCC--cEEE
Confidence            99999999999999999999999885 888776543  47999999999999765544  34556677777663  7999


Q ss_pred             eCcccCCCchHHHHHHHHHHc
Q 010548          156 CSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      |||++|.||+++|++|.+.+.
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.90  E-value=6.8e-24  Score=193.47  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=117.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++|.+..+.. +.++......  .+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   90 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIK--SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEE--EEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCCeEEE--EEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            467999999999999999999999876422 2222111111  2223478999999999999998889999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+......   ++....+....  ....++++|||++|.||+
T Consensus        91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           91 IDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            99999999999876 66655332  247999999999999765332   11111111100  011268999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       167 ~l~~~l~~~~~  177 (181)
T 1fzq_A          167 DGMNWVCKNVN  177 (181)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.90  E-value=8.8e-24  Score=194.67  Aligned_cols=160  Identities=11%  Similarity=0.136  Sum_probs=114.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      ++.+||+|+|++|||||||+++|+++.+....++. . .. ...+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~-~-~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv  103 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-G-FN-VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  103 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEET-T-EE-EEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcC-c-ee-EEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            56799999999999999999999988765332221 1 11 112334678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.+++.+.. |+..+...  ..++|+++|+||+|+.+....   .+....+....  ....++++|||++|.|++
T Consensus       104 ~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          104 VDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            99999999999886 66665442  247999999999999764221   11111111111  011258999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.90  E-value=1.7e-23  Score=193.24  Aligned_cols=162  Identities=13%  Similarity=0.128  Sum_probs=115.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCccc-CCceEEEEEeCCCCccchhhh---HHhh
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFY-PDRVPVTIIDTSSSLENKGKL---NEEL   80 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~-~~~~~~~i~Dt~G~~~~~~~~---~~~~   80 (507)
                      ...+.+||+++|++|||||||++++.+... .. ++.....+   ....+. ...+.+.+|||+|++.+....   ..++
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCC-GG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            345689999999999999999998887542 22 11111111   111122 456899999999999987777   8999


Q ss_pred             ccCCEEEEEEeCCCh--hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-----cchhhhhHHHHH----Hhcc
Q 010548           81 KRADAVVLTYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQ----QFRE  149 (507)
Q Consensus        81 ~~ad~il~V~D~~~~--~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~~~~----~~~~  149 (507)
                      +.+|++|+|||++++  +++..+.. |+..+....+++|+++|+||+|+......     .........++.    .++ 
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-  171 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH-  171 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC-
T ss_pred             ccCCEEEEEEECCCchHHHHHHHHH-HHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC-
Confidence            999999999999997  66666664 77766555668999999999998753110     012223444555    233 


Q ss_pred             cCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          150 IETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       150 ~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                       .++++|||++ .||+++|+.|++.+
T Consensus       172 -~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 -LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             -EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             -cceEEEEech-hhHHHHHHHHHHHh
Confidence             3799999999 99999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.90  E-value=6.9e-23  Score=191.73  Aligned_cols=161  Identities=16%  Similarity=0.167  Sum_probs=115.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCC-ceEEEEEeCCCCccchh-hhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLENKG-KLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il   87 (507)
                      .+.+||+++|++|||||||+++|++..+...++++...... ..+... ++.+.+|||||++.+.. ++..+++.+|++|
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i   83 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI-YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   83 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE-EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE-EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence            45789999999999999999999998887766654433322 333333 68999999999998887 7788899999999


Q ss_pred             EEEeCCChh-hHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc---------------
Q 010548           88 LTYACNQQS-TLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR---------------  148 (507)
Q Consensus        88 ~V~D~~~~~-s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---------------  148 (507)
                      +|||+++.. ++......|...+...   ..++|+++|+||+|+......   ......+...++               
T Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHHHHHhccchhccccccC
Confidence            999999853 4666665566665542   347999999999999865432   111111111111               


Q ss_pred             ---------------------ccCcEEEeCcccC------CCchHHHHHHHHH
Q 010548          149 ---------------------EIETCVECSATTM------IQVPDVFYYAQKA  174 (507)
Q Consensus       149 ---------------------~~~~~~~~SA~~g------~gi~~l~~~i~~~  174 (507)
                                           ...+|++|||++|      .||+++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                 0236999999999      9999999999875

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.90  E-value=4.2e-25  Score=204.56  Aligned_cols=162  Identities=18%  Similarity=0.270  Sum_probs=120.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~-~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+|+|++..+..... +...... ....+....+.+.+|||||++.+...+..+++.+|++|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            456999999999999999999999887654422 2111111 22333445578999999999999988999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |+..+.... .++|+++|+||+|+...+.+  ..+....++..++.  ++++|||++|.||++
T Consensus       111 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLGI--PFLETSAKNATNVEQ  185 (199)
T ss_dssp             ECC-CCCSHHHHHHHH-HHHHHHSCC-CCSEEEEC-CCSSCC--CCC--CSCC-CHHHHTTTC--CBCCCCC---HHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhccCCCCEEEEEECccCCccccC--CHHHHHHHHHHcCC--eEEEEECCCCCCHHH
Confidence            9999999999999986 988887764 37999999999999876554  22345666777763  699999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|++|.+.+.
T Consensus       186 l~~~l~~~l~  195 (199)
T 3l0i_B          186 SFMTMAAEIK  195 (199)
T ss_dssp             HHHHHTTTTT
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.82  E-value=3.1e-25  Score=206.25  Aligned_cols=165  Identities=24%  Similarity=0.332  Sum_probs=128.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+.+||+++|++|||||||+++|+++.+.....++. ........+....+.+.+|||||++++......+++.+|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            457999999999999999999999888755543322 2222333444556788899999999999889999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCc
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      |||++++.+++.+...|+..++...+++|+++|+||+|+......          ....+....+++.++. .++++|||
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~vSA  186 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA-VKYLECSA  186 (204)
Confidence            999999999999875598888877668999999999999764311          0122334455555543 26899999


Q ss_pred             ccCCCchHHHHHHHHHH
Q 010548          159 TTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i  175 (507)
                      ++|.||+++|+.|.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999987754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.89  E-value=5.8e-23  Score=205.33  Aligned_cols=166  Identities=25%  Similarity=0.333  Sum_probs=133.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ...+||+++|.+|||||||+++++++.+...+.++... ......+....+.+.+|||||++.+......+++.+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            34689999999999999999999998876665443322 22233444556778899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEe
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      |||++++.+++.+...|...++...+++|+++|+||+|+...            +.+  ..+....+++.++. .++++|
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~~~~~~  309 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI--TYPQGLAMAKEIGA-VKYLEC  309 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC--CHHHHHHHHHHTTC-SEEEEC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccc--cHHHHHHHHHHcCC-cEEEEe
Confidence            999999999999886699999887778999999999999654            222  33455666776653 269999


Q ss_pred             CcccCCCchHHHHHHHHHHcCC
Q 010548          157 SATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      ||++|.||+++|+.|.+.++.+
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999988654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.89  E-value=3.1e-23  Score=190.09  Aligned_cols=160  Identities=16%  Similarity=0.116  Sum_probs=119.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++|+++.+....++.. ....  .+...+..+.+|||||++.+...+..+++.+|++++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLE--TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT-CCEE--EEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc-eEEE--EEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            468999999999999999999999877654333222 1111  1223478999999999999988888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-c-ccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-R-EIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.++..+.. |+..+...  ..++|+++|+||+|+......   .+....+.... . ...++++|||++|.|++
T Consensus        97 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           97 VDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999998886 65555443  247999999999999765322   11111111111 0 01268999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      +++++|.+.+.
T Consensus       173 ~l~~~l~~~i~  183 (189)
T 2x77_A          173 EGMDWLVERLR  183 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=2.6e-23  Score=189.31  Aligned_cols=159  Identities=13%  Similarity=0.128  Sum_probs=114.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++++++.+....++ ......  .+...+..+.+|||||++.+...+..+++.+|++++|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNVE--TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV   92 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS-TTCCEE--EEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCc-CccceE--EEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            5679999999999999999999998776222222 221111  1223468999999999999888899999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--c-ccCcEEEeCcccCCCc
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--R-EIETCVECSATTMIQV  164 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~SA~~g~gi  164 (507)
                      +|++++.+++.+.. |+..+...  ..++|+++|+||+|+......    +.........  . ...++++|||++|.|+
T Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (183)
T 1moz_A           93 VDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGALSA----SEVSKELNLVELKDRSWSIVASSAIKGEGI  167 (183)
T ss_dssp             EETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTCCCH----HHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCCCCH----HHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            99999999999886 66666543  357999999999999764221    1111111110  0 1126899999999999


Q ss_pred             hHHHHHHHHHHc
Q 010548          165 PDVFYYAQKAVL  176 (507)
Q Consensus       165 ~~l~~~i~~~i~  176 (507)
                      ++++++|.+.+.
T Consensus       168 ~~l~~~l~~~~~  179 (183)
T 1moz_A          168 TEGLDWLIDVIK  179 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.89  E-value=1.1e-22  Score=182.50  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=109.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccch------hhhHHhhc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENK------GKLNEELK   81 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~   81 (507)
                      +.++|+++|++|||||||+++|++..+....   .++++..   ..+...+..+.+|||||+..+.      .....+++
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGN---WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC--------CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccC---CCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            4589999999999999999999987653321   1122211   1122346789999999988764      23345554


Q ss_pred             --cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           82 --RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        82 --~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                        .+|++++|+|+++...   ... |+..+.+.  ++|+++|+||+|+...+.+ .  .....++..++.  ++++|||+
T Consensus        79 ~~~~~~~i~v~D~~~~~~---~~~-~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-~--~~~~~~~~~~~~--~~~~~SA~  147 (165)
T 2wji_A           79 NEKPDLVVNIVDATALER---NLY-LTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILGV--KVVPLSAA  147 (165)
T ss_dssp             HHCCSEEEEEEETTCHHH---HHH-HHHHHHHT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHTS--CEEECBGG
T ss_pred             cCCCCEEEEEecCCchhH---hHH-HHHHHHhc--CCCEEEEEEchHhccccCh-h--hHHHHHHHHhCC--CEEEEEcC
Confidence              8999999999988643   232 77777665  7999999999998654433 2  134566676663  79999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKAV  175 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i  175 (507)
                      +|.|++++|++|.+.+
T Consensus       148 ~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          148 KKMGIEELKKAISIAV  163 (165)
T ss_dssp             GTBSHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.88  E-value=8.4e-22  Score=209.84  Aligned_cols=163  Identities=19%  Similarity=0.205  Sum_probs=116.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--------CCcc--cCCceEEEEEeCCCCccchhhhHH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--------PPDF--YPDRVPVTIIDTSSSLENKGKLNE   78 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~--------~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~   78 (507)
                      ....+||+++|.+|||||||+++|++..+.....++......        ...+  ....+.+.+|||||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999998876554433322111        1222  234789999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +++.+|++|+|+|+++.+.   .. .|...+....+++|+|+|+||+|+...+.+  ..+.........+.  ++++|||
T Consensus       118 ~l~~~d~ii~V~D~s~~~~---~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~~vSA  189 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDSN---KH-YWLRHIEKYGGKSPVIVVMNKIDENPSYNI--EQKKINERFPAIEN--RFHRISC  189 (535)
T ss_dssp             HHHSSEEEEEEECGGGGGG---HH-HHHHHHHHHSSSCCEEEEECCTTTCTTCCC--CHHHHHHHCGGGTT--CEEECCC
T ss_pred             HccCCcEEEEEEeCCCchh---HH-HHHHHHHHhCCCCCEEEEEECCCccccccc--CHHHHHHHHHhcCC--ceEEEec
Confidence            9999999999999987643   33 388899888778999999999999876554  23334444455543  6999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCC
Q 010548          159 TTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      ++|.||+++++.|.+.+....
T Consensus       190 ~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          190 KNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             -----CTTHHHHHHHHHTCTT
T ss_pred             CcccCHHHHHHHHHHHHhccc
Confidence            999999999999999886543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.88  E-value=2.3e-22  Score=182.04  Aligned_cols=159  Identities=16%  Similarity=0.115  Sum_probs=113.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+.++|+++|++|||||||+++|++..+.....+..........+...+..+.+|||||++.+......+++.+|++++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            45678999999999999999999999887554322111111112233456788999999999998888889999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-------cccCcEEEeCcccC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-------REIETCVECSATTM  161 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~SA~~g  161 (507)
                      |+|++++.......  ++..+...  ++|+++|+||+|+.....     +.........       +...++++|||++|
T Consensus        85 v~d~~~~~~~~~~~--~l~~~~~~--~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           85 VVAADDGVMPQTVE--AINHAKAA--NVPIIVAINKMDKPEANP-----DRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEETTCCCCHHHHH--HHHHHGGG--SCCEEEEEETTTSSCSCH-----HHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEECCCCCcHHHHH--HHHHHHhC--CCCEEEEEECccCCcCCH-----HHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            99999854443333  33344443  799999999999976321     1111111221       11137999999999


Q ss_pred             CCchHHHHHHHHHHc
Q 010548          162 IQVPDVFYYAQKAVL  176 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~  176 (507)
                      .|++++|++|.+.+.
T Consensus       156 ~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          156 EGLDHLLEMILLVSE  170 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.88  E-value=3e-23  Score=189.68  Aligned_cols=164  Identities=13%  Similarity=0.220  Sum_probs=114.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCCCC-Cee-eCCcc---cCCceEEEEEeCCCCccchhhhHHhhccCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATE--SVPEKVPPVHA-PTR-LPPDF---YPDRVPVTIIDTSSSLENKGKLNEELKRAD   84 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~~~~~~-~~t-~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad   84 (507)
                      .+||+|+|++|||||||+++|++.  .+...+.++.. ... ....+   ....+.+.+|||+|++++......+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  33333222211 111 11111   224678999999999988888899999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc--hhhhhHHHHHHhccc--CcEEEeCcc
Q 010548           85 AVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPIMQQFREI--ETCVECSAT  159 (507)
Q Consensus        85 ~il~V~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~SA~  159 (507)
                      ++++|||++++ .++..+.. |+..+....++.|+++|+||+|+...+.. .  .......++..++..  .+++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKP-WLFNIKARASSSPVILVGTHLDVSDEKQR-KACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHH-HHHHHHHHCTTCEEEEEEECGGGCCHHHH-HHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHH-HHHHHHhhCCCCcEEEEEECCCcccchhh-HHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999997 57888875 99888776668999999999999764322 1  012223333333321  138999999


Q ss_pred             cCC-CchHHHHHHHHHHcC
Q 010548          160 TMI-QVPDVFYYAQKAVLH  177 (507)
Q Consensus       160 ~g~-gi~~l~~~i~~~i~~  177 (507)
                      +|. |++++++.|.+.+..
T Consensus       160 ~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          160 EESDALAKLRKTIINESLN  178 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHC
T ss_pred             cCchhHHHHHHHHHHHHhc
Confidence            997 999999999887754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.88  E-value=4e-22  Score=183.02  Aligned_cols=165  Identities=16%  Similarity=0.145  Sum_probs=113.5

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCC----------Cccchh
Q 010548            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKG   74 (507)
Q Consensus         5 ~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G----------~~~~~~   74 (507)
                      ........+||+|+|++|||||||+|+|++..+....+  .++++....+...+..+.+|||||          .+.+..
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK--TPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS--SCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccC--CCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHH
Confidence            33344567899999999999999999999987322222  222332222222345688999999          444556


Q ss_pred             hhHHhhccC---CEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC
Q 010548           75 KLNEELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE  151 (507)
Q Consensus        75 ~~~~~~~~a---d~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (507)
                      ....+++.+   |++++|+|+++..+.....  +...+...  ++|+++|+||+|+..........+....+...++. .
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~  168 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE-Y  168 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC-S
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC-C
Confidence            666677666   9999999998875554432  44555555  79999999999997643321122333444443332 3


Q ss_pred             cEEEeCcccCCCchHHHHHHHHHHc
Q 010548          152 TCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       152 ~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ++++|||++|.||+++|++|.+.+.
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhh
Confidence            7999999999999999999988763

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.87  E-value=5.7e-22  Score=206.46  Aligned_cols=203  Identities=16%  Similarity=0.135  Sum_probs=130.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhhhH--------Hh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE   79 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~   79 (507)
                      ..+||+|+|.+|||||||+|+|++...  ...+..+++|   ....+...++.+.+|||||+.++...+.        .+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~--a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQER--AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            468999999999999999999998752  2222233333   2223345678999999999877654432        36


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++.+|++|+|+|++++.+++.+.. +...++... ++|+++|+||+|+......     ....+... + ..++++|||+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l~-~~piIvV~NK~Dl~~~~~~-----~~~~l~~~-~-~~~~i~vSAk  380 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTE-IRELKAAHP-AAKFLTVANKLDRAANADA-----LIRAIADG-T-GTEVIGISAL  380 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHCT-TSEEEEEEECTTSCTTTHH-----HHHHHHHH-H-TSCEEECBTT
T ss_pred             cccCCEEEEEEECCCCcchhhhHH-HHHHHHhcC-CCCEEEEEECcCCCCccch-----hHHHHHhc-C-CCceEEEEEC
Confidence            799999999999999988754332 333343333 7999999999999765432     11223332 1 1379999999


Q ss_pred             cCCCchHHHHHHHHHHc-CCC----CCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhH
Q 010548          160 TMIQVPDVFYYAQKAVL-HPT----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK  224 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~-~~~----~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~  224 (507)
                      +|.||++++++|.+.+. .+.    .+.....++ .....+..+|.+.....+...+..+.+++++.++..
T Consensus       381 tg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~dl~a~~lr~a~~~  451 (476)
T 3gee_A          381 NGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAALDY  451 (476)
T ss_dssp             TTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHTTTTTTCCSSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99999999999999886 332    222333333 356788888888888777777778899998877665

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.87  E-value=1.2e-22  Score=202.98  Aligned_cols=162  Identities=12%  Similarity=0.127  Sum_probs=116.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+|+|++|||||||+++|++..+....++....   ...+...++.+.||||||++.+..+...+++.+|++|+|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~---~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEE---EEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceE---EEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            45689999999999999999999988865443321111   112345678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~~  166 (507)
                      ||++++.++..+...|...+... .+++|+++|+||+|+.+....   .+....+....  ....++++|||++|.||++
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999887455544433 247999999999999765322   11111111111  0112689999999999999


Q ss_pred             HHHHHHHHHcC
Q 010548          167 VFYYAQKAVLH  177 (507)
Q Consensus       167 l~~~i~~~i~~  177 (507)
                      +|+.|.+.+..
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.87  E-value=1.7e-21  Score=192.82  Aligned_cols=163  Identities=18%  Similarity=0.158  Sum_probs=124.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCC-ceEEEEEeCCCCccch----------
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPD-RVPVTIIDTSSSLENK----------   73 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~-~~~~~i~Dt~G~~~~~----------   73 (507)
                      .+++.-.|+|+|++|||||||+|+|++.++...  +..+++|.   ...+... +..+.+|||||+....          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~--s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII--SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc--CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence            455678999999999999999999999886422  22222331   1222344 7899999999986544          


Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcE
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC  153 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (507)
                      .....+++.+|++++|+|++++.++.+... |+..++..  ++|+++|+||+|+......  .......+...++...++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~~--~~pvilV~NK~Dl~~~~~~--~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKPL--NKPVIVVINKIDKIGPAKN--VLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGGG--CCCEEEEEECGGGSSSGGG--GHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHhc--CCCEEEEEECccCCCCHHH--HHHHHHHHHHhccCCCeE
Confidence            445678899999999999999988888664 78888875  7999999999999743222  345566677776544579


Q ss_pred             EEeCcccCCCchHHHHHHHHHHcC
Q 010548          154 VECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      +++||++|.|++++++.|.+.+..
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCcc
Confidence            999999999999999999998753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.87  E-value=8.4e-22  Score=186.46  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=112.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCcc------c---hhhhH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLE------N---KGKLN   77 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~------~---~~~~~   77 (507)
                      .+.+||+|+|++|||||||+|+|++..+....   .+.++...   .+...+..+.+|||||+..      .   ...+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS---YSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC---C-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC---CCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            45799999999999999999999998764211   12222211   1223467899999999832      1   11223


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHH-HHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh--hhhHHHHHHhcccCcEE
Q 010548           78 EELKRADAVVLTYACNQQSTLSRL-SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE--EVMGPIMQQFREIETCV  154 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~-~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~  154 (507)
                      .++..+|++|+|||++++.++... ...|+..++...+++|+++|+||+|+...+.+ ...  .....++...+...+++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL-SIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC-CHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh-HHHHHHHHHHHHHhcCCCceEE
Confidence            457889999999999998776522 12377777765558999999999999876554 221  23445555544223799


Q ss_pred             EeCcccCCCchHHHHHHHHHHc
Q 010548          155 ECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +|||++|.||+++|++|.+.+.
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHH
Confidence            9999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.87  E-value=5.2e-22  Score=182.62  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=108.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCC----------CccchhhhHH
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS----------SLENKGKLNE   78 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~~   78 (507)
                      ....++|+|+|++|||||||+|+|++..+...+.+. ++.|........+..+.+|||||          .+.+......
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSK-PGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC-CCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            445799999999999999999999998754433222 22222111111123689999999          4555666677


Q ss_pred             hhccC---CEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548           79 ELKRA---DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (507)
Q Consensus        79 ~~~~a---d~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (507)
                      +++.+   |++++|+|++++.++....  +...+...  ++|+++|+||+|+...+..   ......+...+..  ..++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~--~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTSEE
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCChHHH---HHHHHHHHHHHcccCCCce
Confidence            77777   9999999999988877653  45555554  7999999999999865433   1222333333321  2379


Q ss_pred             EEeCcccCCCchHHHHHHHHHH
Q 010548          154 VECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ++|||++|.|+++++++|.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.86  E-value=8e-22  Score=180.28  Aligned_cols=159  Identities=16%  Similarity=0.148  Sum_probs=115.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccch------hhhHHhhc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK   81 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~   81 (507)
                      .++.+||+++|++|||||||+++|++..+... .++.... .....+...+..+.+|||||+..+.      .....+++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE-KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeecc-ceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            45679999999999999999999998764322 2221111 1122233456889999999988764      33445554


Q ss_pred             --cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           82 --RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        82 --~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                        .+|++++|+|.++   ++.... |...+...  ++|+++|+||+|+.....+ .  .....+++.++.  ++++|||+
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~-~~~~~~~~--~~piilv~nK~Dl~~~~~~-~--~~~~~~~~~~~~--~~~~~Sa~  151 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLY-LTLQLMEM--GANLLLALNKMDLAKSLGI-E--IDVDKLEKILGV--KVVPLSAA  151 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHH-HHHHHHTT--TCCEEEEEECHHHHHHTTC-C--CCHHHHHHHHTS--CEEECBGG
T ss_pred             ccCCCEEEEEecchh---HHHHHH-HHHHHHhc--CCCEEEEEEhhhccccccc-h--HHHHHHHHHhCC--CeEEEEec
Confidence              5999999999876   444443 77777664  7999999999998754433 1  345666777663  79999999


Q ss_pred             cCCCchHHHHHHHHHHcCCC
Q 010548          160 TMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~~~  179 (507)
                      +|.|++++|++|.+.+....
T Consensus       152 ~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          152 KKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             GTBSHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999886554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.86  E-value=7.8e-22  Score=178.28  Aligned_cols=151  Identities=24%  Similarity=0.291  Sum_probs=106.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh--------hHHhh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK--------LNEEL   80 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~   80 (507)
                      +..||+|+|++|||||||+|+|++..+.  ...+++.... ....+...+..+.+|||||+..+...        ...++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDV-LREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSC-EEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceece-eeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            4689999999999999999999987642  2222221111 11122334567999999998654221        12468


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      +.+|++++|||++++.+++..  .|+..+.... .++|+++|+||+|+......  ..       ...+  .++++|||+
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~-------~~~~--~~~~~~SA~  148 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGETLG--MS-------EVNG--HALIRLSAR  148 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--EE-------EETT--EEEEECCTT
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcchhh--hh-------hccC--CceEEEeCC
Confidence            999999999999999887643  3777766543 47999999999998643211  00       0111  268999999


Q ss_pred             cCCCchHHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKAV  175 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i  175 (507)
                      +|.||+++|+.|.+.+
T Consensus       149 ~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          149 TGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             TCTTHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998865

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=189.23  Aligned_cols=162  Identities=15%  Similarity=0.084  Sum_probs=111.9

Q ss_pred             CCCCceEEEEEcCC---------CCCHHHHHHHHhcC---CCCCCCCCCCC--Cee-eCCc--------------ccCCc
Q 010548            8 SSRTGVRVVVVGDR---------GTGKSSLIAAAATE---SVPEKVPPVHA--PTR-LPPD--------------FYPDR   58 (507)
Q Consensus         8 ~~~~~~kV~ivG~~---------~vGKSSLin~l~~~---~~~~~~~~~~~--~~t-~~~~--------------~~~~~   58 (507)
                      ...+.+||+|+|++         |||||||+++|++.   .+...+.++..  ... ....              ++...
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35567999999999         99999999999994   44333332110  000 1111              23456


Q ss_pred             eEEEEEe-----------------------CCCCccchhhhHHhhc---------------------cCCEEEEEEeCCC
Q 010548           59 VPVTIID-----------------------TSSSLENKGKLNEELK---------------------RADAVVLTYACNQ   94 (507)
Q Consensus        59 ~~~~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~il~V~D~~~   94 (507)
                      +.+.|||                       ++|++.+..+...+++                     +||++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       5555555555555555                     7999999999999


Q ss_pred             h--hhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           95 Q--STLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        95 ~--~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      +  .+++.+.. |+..+...  ..++|+++|+||+|+...+.+    +....++..... .++++|||++|.||+++|++
T Consensus       175 ~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~~~~~~-~~~~e~SAk~g~gv~elf~~  248 (255)
T 3c5h_A          175 GMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFALSKKN-LQVVETSARSNVNVDLAFST  248 (255)
T ss_dssp             ----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHHHTSSS-CCEEECBTTTTBSHHHHHHH
T ss_pred             CchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH----HHHHHHHHhcCC-CeEEEEECCCCCCHHHHHHH
Confidence            8  99999886 88877653  247999999999999654322    344555554322 27999999999999999999


Q ss_pred             HHHHH
Q 010548          171 AQKAV  175 (507)
Q Consensus       171 i~~~i  175 (507)
                      |.+.+
T Consensus       249 l~~~l  253 (255)
T 3c5h_A          249 LVQLI  253 (255)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.86  E-value=1.8e-21  Score=192.47  Aligned_cols=163  Identities=12%  Similarity=0.157  Sum_probs=120.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCC--CCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccc-----hhhhHHhhcc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESV--PEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-----KGKLNEELKR   82 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~--~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~~~   82 (507)
                      ..+||+++|++|||||||+++++++..  ... +.++.........+ .+++.+.+|||||++.+     ......+++.
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            468999999999999999999998742  111 11111111111122 24789999999999887     6677889999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhH---HHHHHhcCCCCcEEEEEecccCCC--CCCc--cchhhhhHHHHHHhcc-cCcEE
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLRG--DHNA--TSLEEVMGPIMQQFRE-IETCV  154 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~---~~~l~~~~~~~piilv~NK~Dl~~--~~~~--~~~~~~~~~~~~~~~~-~~~~~  154 (507)
                      +|++|+|||++++.+++++.. |   +..++...+++|+++|+||+|+..  .+..  ....+....++..++. ..+++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~  159 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF  159 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred             CCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence            999999999999999999864 5   444555566899999999999986  2220  0123456677777763 24799


Q ss_pred             EeCcccCCCchHHHHHHHHHHc
Q 010548          155 ECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +|||++ .|+.++|..+.+.+.
T Consensus       160 ~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          160 PTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             ECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EeeecC-ChHHHHHHHHHHHHc
Confidence            999999 899999999887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.86  E-value=1.4e-21  Score=183.90  Aligned_cols=166  Identities=11%  Similarity=-0.008  Sum_probs=111.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---Cccc-CCceEEEEEeCCCCcc----------ch
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFY-PDRVPVTIIDTSSSLE----------NK   73 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~-~~~~~~~i~Dt~G~~~----------~~   73 (507)
                      .....++|+|+|.+|||||||+|+|++..+.... ...+++|..   ..+. ..+..+.+|||||...          +.
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFA-SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCT-TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceee-cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            3455789999999999999999999988632111 111222211   1222 4467899999999532          34


Q ss_pred             hhhHHhhcc---CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh---
Q 010548           74 GKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---  147 (507)
Q Consensus        74 ~~~~~~~~~---ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---  147 (507)
                      .....+++.   +|++++|+|++++.+....  .|+..++..  ++|+++|+||+|+..........+........+   
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELDR--RMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            455566655   7889999999987554433  377777775  799999999999976432201111222222222   


Q ss_pred             --cccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          148 --REIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       148 --~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                        ....++++|||++|.||++++++|.+.+..+
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence              2234799999999999999999999987544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.85  E-value=4.2e-21  Score=186.17  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=112.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccch------hhhHHhhc--c
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESV-PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK------GKLNEELK--R   82 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~--~   82 (507)
                      .+||+++|++|||||||+|+|++..+ ..++++..-.. ....+.. +..+.+|||||+..+.      .....++.  .
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~-~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER-KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC-EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE-EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            57999999999999999999998763 23333211111 1122333 6789999999988765      34455665  6


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +|++++|+|+++.++..    +|...+...  ++|+++|+||+|+...+.. .  .....++..++.  ++++|||++|.
T Consensus        81 ~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg~--~vi~~SA~~g~  149 (272)
T 3b1v_A           81 ADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQGK-K--INVDKLSYHLGV--PVVATSALKQT  149 (272)
T ss_dssp             CSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTTC-C--CCHHHHHHHHTS--CEEECBTTTTB
T ss_pred             CCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCCc-H--HHHHHHHHHcCC--CEEEEEccCCC
Confidence            99999999998865432    266666665  7999999999998654433 1  234566777764  79999999999


Q ss_pred             CchHHHHHHHHHHcC
Q 010548          163 QVPDVFYYAQKAVLH  177 (507)
Q Consensus       163 gi~~l~~~i~~~i~~  177 (507)
                      |++++|+.|.+.+..
T Consensus       150 gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          150 GVDQVVKKAAHTTTS  164 (272)
T ss_dssp             SHHHHHHHHHHSCTT
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999887543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.85  E-value=3.3e-21  Score=185.74  Aligned_cols=156  Identities=17%  Similarity=0.105  Sum_probs=115.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh------hHHhh--
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK------LNEEL--   80 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~--   80 (507)
                      ++.+||+++|++|||||||+|+|++..+... .++.... .....+...+..+.+|||||...+...      ...++  
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVE-KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCE-EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEE-EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            4568999999999999999999998775322 3321111 122233345689999999998766542      24555  


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      ..+|++++|+|+++.++..    +|...+...  ++|+++|+||+|+...+.. .  .....+++.++.  +++++||++
T Consensus        82 ~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i-~--~~~~~l~~~lg~--~vi~~SA~~  150 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM-K--IDRYELQKHLGI--PVVFTSSVT  150 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC-C--BCHHHHHHHHCS--CEEECCTTT
T ss_pred             cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch-H--HHHHHHHHHcCC--CEEEEEeeC
Confidence            5899999999999875432    266666665  7999999999998765444 2  235667777774  799999999


Q ss_pred             CCCchHHHHHHHHHHcC
Q 010548          161 MIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~  177 (507)
                      |.|++++++.|.+.+..
T Consensus       151 g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          151 GEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             CTTHHHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHHhhc
Confidence            99999999999987753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.85  E-value=3e-21  Score=171.54  Aligned_cols=150  Identities=21%  Similarity=0.232  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccc-------hhhhHHhhccC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-------KGKLNEELKRA   83 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a   83 (507)
                      .||+++|++|||||||+++|.+..+..  ..++..... ....+...+..+.+|||||...+       ......+++.+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL-KEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CC-EEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-eEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            689999999999999999999887431  122211111 11122234568999999998762       34455688999


Q ss_pred             CEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      |++++|+|++++.+...  ..+...++..  ++|+++|+||+|+....      +....++ .++. .++++|||++|.|
T Consensus        81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~~-~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE------LYLGPLY-GLGF-GDPIPTSSEHARG  148 (161)
T ss_dssp             SEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG------GGCGGGG-GGSS-CSCEECBTTTTBS
T ss_pred             CEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch------HhHHHHH-hCCC-CCeEEEecccCCC
Confidence            99999999998755443  2245555554  79999999999997542      2223333 3442 2689999999999


Q ss_pred             chHHHHHHHHHH
Q 010548          164 VPDVFYYAQKAV  175 (507)
Q Consensus       164 i~~l~~~i~~~i  175 (507)
                      ++++|++|.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.85  E-value=1.3e-21  Score=203.81  Aligned_cols=198  Identities=17%  Similarity=0.144  Sum_probs=140.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCc-cchh--------hhHHh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSL-ENKG--------KLNEE   79 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~-~~~~--------~~~~~   79 (507)
                      .++|+|+|.||||||||+|+|++..+.  +.+..+++|.   ...+..++..+.+|||||+. ++..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a--~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRA--IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBC--CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCC--ccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987631  2222233331   12233457889999999987 5542        23468


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++.+|++|+|+|++++.++++..  +++.+    .++|+++|+||+|+...  . .. +....+   .+...++++|||+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--~-~~-~~~~~~---~~~~~~~i~iSAk  387 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--I-NE-EEIKNK---LGTDRHMVKISAL  387 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--C-CH-HHHHHH---HTCSTTEEEEEGG
T ss_pred             hhcccEEEEEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--c-CH-HHHHHH---hcCCCcEEEEECC
Confidence            89999999999999988877643  44444    37899999999999753  2 11 222222   2221379999999


Q ss_pred             cCCCchHHHHHHHHHHcC----CCCCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhH
Q 010548          160 TMIQVPDVFYYAQKAVLH----PTAPLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK  224 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~----~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~  224 (507)
                      +|.|++++++.|.+.+..    ...+...+.++ ....++..+|.+.......+....+.+++++.++..
T Consensus       388 tg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~~~~~l~a~~lr~a~~~  457 (482)
T 1xzp_A          388 KGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNL  457 (482)
T ss_dssp             GTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            999999999999987542    12233333343 466788888888877766666668889999888765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.85  E-value=9.8e-21  Score=186.38  Aligned_cols=157  Identities=22%  Similarity=0.153  Sum_probs=112.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc--------chhhhHH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE--------NKGKLNE   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~   78 (507)
                      .+..+|+|+|++|||||||+|+|++.++...  +..+.+|   +...+...+.++.+|||||+..        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv--s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC--CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeee--cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            4557899999999999999999999886421  1122222   1112334578999999999876        3344557


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      +++.+|++++|+|++++.+...  ..+...+++..+++|+++|+||+|+.....     . .......+....+++++||
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~-~~~~~~~~~~~~~~~~iSA  154 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-----E-AMKAYHELLPEAEPRMLSA  154 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-----H-HHHHHHHTSTTSEEEECCT
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-----H-HHHHHHHhcCcCcEEEEeC
Confidence            8999999999999998765543  324566776555799999999999975322     0 1222233322236899999


Q ss_pred             ccCCCchHHHHHHHHHHc
Q 010548          159 TTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~  176 (507)
                      ++|.|++++++.|.+.+.
T Consensus       155 ~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          155 LDERQVAELKADLLALMP  172 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhcc
Confidence            999999999999988653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=5.7e-21  Score=198.20  Aligned_cols=198  Identities=18%  Similarity=0.198  Sum_probs=135.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhhhH--------Hh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLN--------EE   79 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~   79 (507)
                      ..+||+|+|++|||||||+|+|++..+  .+.+..+++|   ....+..++..+.+|||||+.++....+        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~--a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDR--AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHB--SCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCc--ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            468999999999999999999998753  2222233343   2223344678899999999866544333        36


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                      ++.+|++++|+|++++.+.....  |+..+.    ++|+++|+||+|+...... .   ...    .+....++++|||+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~~~--i~~~l~----~~piivV~NK~Dl~~~~~~-~---~~~----~~~~~~~~i~iSAk  366 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGDQE--IYEQVK----HRPLILVMNKIDLVEKQLI-T---SLE----YPENITQIVHTAAA  366 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHHHH--HHHHHT----TSCEEEEEECTTSSCGGGS-T---TCC----CCTTCCCEEEEBTT
T ss_pred             hhcCCEEEEEeccCCCCCHHHHH--HHHhcc----CCcEEEEEECCCCCcchhh-H---HHH----HhccCCcEEEEECC
Confidence            78999999999999987766532  666553    3799999999999865433 1   111    11122379999999


Q ss_pred             cCCCchHHHHHHHHHHcCCC-----CCCCccchh-cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhH
Q 010548          160 TMIQVPDVFYYAQKAVLHPT-----APLFDHDEQ-TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVK  224 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~~~~-----~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~  224 (507)
                      +|.|++++++.|.+.+....     .+...+.++ ....++..+|.+.....+.+.+..+.+++++.++..
T Consensus       367 tg~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~~~~dl~a~~Lr~a~~~  437 (462)
T 3geh_A          367 QKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQA  437 (462)
T ss_dssp             TTBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHHHHHTTTTCCGGGTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            99999999999999886543     122233333 466788999999888887777889999999988775

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.85  E-value=1.3e-20  Score=174.25  Aligned_cols=161  Identities=20%  Similarity=0.249  Sum_probs=125.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+|+|++|||||||+++|++..+.....++.. .. .....+....+.+.+|||+|++.+......+++.++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            358999999999999999999999887555433221 11 1223344556788999999999888888899999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |+|+++..+++.+.. |+..+.... .+.|+++|+||+|+...+..  ....+..++...+.  .++++||+++.|++++
T Consensus        84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~~~~--~~~d~Sal~~~~i~~l  158 (199)
T 2f9l_A           84 VYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNNL--SFIETSALDSTNVEEA  158 (199)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEECcccccccCc--CHHHHHHHHHHcCC--eEEEEeCCCCCCHHHH
Confidence            999999999988775 887776542 47899999999999765444  23345666666653  6899999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      ++.|.+.+.
T Consensus       159 ~~~l~~~~~  167 (199)
T 2f9l_A          159 FKNILTEIY  167 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.85  E-value=2.1e-20  Score=171.90  Aligned_cols=161  Identities=20%  Similarity=0.241  Sum_probs=125.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|++..+.....++... . .....+....+.+.+|||+|++++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            34689999999999999999999998876554332221 1 122334444567888999999988888899999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|+|+++..+++.+.. |...++.. ..+.|+++|+||+|+...+..  ....+..++.+.+.  .++++||+++.|+++
T Consensus       107 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~~~~--~~ld~Sald~~~v~~  181 (191)
T 1oix_A          107 LVYDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNGL--SFIETSALDSTNVEA  181 (191)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccccccccc--CHHHHHHHHHHcCC--EEEEEeCCCCCCHHH
Confidence            9999999999988775 87777653 347899999999999765444  23445666666653  689999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +++.|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.84  E-value=4.8e-21  Score=175.19  Aligned_cols=155  Identities=17%  Similarity=0.182  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-cccCCceEEEEEeCCC-----------CccchhhhHHhh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-DFYPDRVPVTIIDTSS-----------SLENKGKLNEEL   80 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~~   80 (507)
                      +||+++|++|||||||+++|++..+.....+   +++... .+...  .+.+|||||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP---GVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST---TCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCC---CccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6999999999999999999999886544322   122110 11111  689999999           445556666777


Q ss_pred             cc-CCEEEEEEeCCChhhHHHHHHhHHHH---------HHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc
Q 010548           81 KR-ADAVVLTYACNQQSTLSRLSSYWLPE---------LRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE  149 (507)
Q Consensus        81 ~~-ad~il~V~D~~~~~s~~~~~~~~~~~---------l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  149 (507)
                      +. ++++++|+++.+..++..+...|...         ++. ...++|+++|+||+|+....     .+....++..++.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~  151 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTC
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhh
Confidence            76 77777777777777887764446542         111 12379999999999997642     3455667777664


Q ss_pred             c-----CcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          150 I-----ETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       150 ~-----~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      .     .++++|||++|.|++++|++|.+.+..
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            2     147999999999999999999987743

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.84  E-value=1.9e-21  Score=190.81  Aligned_cols=159  Identities=13%  Similarity=0.129  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc--CCceEEEEEeCCCCccchh---hhHHhhccCCEEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKG---KLNEELKRADAVVL   88 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~i~Dt~G~~~~~~---~~~~~~~~ad~il~   88 (507)
                      ||+++|+.|||||||++++.++.+........+  |+..++.  ...++++||||+|+++|..   ....++++++++|+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~--Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il   78 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLES--TSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY   78 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCC--CCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecC--eeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence            799999999999999999886643322111111  1111111  2358899999999999964   46789999999999


Q ss_pred             EEeCCCh--hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-----cchhhhhHHHHHHh--cccCcEEEeCcc
Q 010548           89 TYACNQQ--STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-----TSLEEVMGPIMQQF--REIETCVECSAT  159 (507)
Q Consensus        89 V~D~~~~--~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~SA~  159 (507)
                      |||++++  .+...+.+ |+..++...+++|+++||||+|+..+...     ....+....+++..  +.-.+|++|||+
T Consensus        79 V~Ditd~~~~~~~~l~~-~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk  157 (331)
T 3r7w_B           79 VIDSQDEYINAITNLAM-IIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF  157 (331)
T ss_dssp             ECCCSSCTTHHHHHHHH-HHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred             EEECCchHHHHHHHHHH-HHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence            9999998  22333322 45555555678999999999999764210     01222333444421  011279999999


Q ss_pred             cCCCchHHHHHHHHHHc
Q 010548          160 TMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~  176 (507)
                      + .+|.+.|..|++.+.
T Consensus       158 d-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          158 D-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             S-SHHHHHHHHHHTTSS
T ss_pred             C-CcHHHHHHHHHHHHH
Confidence            8 589999999987664

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.84  E-value=7.4e-21  Score=183.01  Aligned_cols=150  Identities=13%  Similarity=0.148  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh----------hhHHhh-
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEEL-   80 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~-   80 (507)
                      .+|+++|.+|||||||+|+|++..+... .++.... .....+...+..+.+|||||...+..          ....++ 
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~-~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~   80 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVE-KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI   80 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSE-EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEE-EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence            4899999999999999999998764222 3221111 12223334567899999999876653          344566 


Q ss_pred             -ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcc
Q 010548           81 -KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSAT  159 (507)
Q Consensus        81 -~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  159 (507)
                       +.+|++|+|+|+++.++...    +...+...  ++|+++|+||+|+...+..   ......+...++.  +++++||+
T Consensus        81 ~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~lg~--~vi~~SA~  149 (256)
T 3iby_A           81 DLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHRGI---SIDTEKLESLLGC--SVIPIQAH  149 (256)
T ss_dssp             HSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHTTC---EECHHHHHHHHCS--CEEECBGG
T ss_pred             hCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcCCc---HHHHHHHHHHcCC--CEEEEECC
Confidence             89999999999998654433    44555555  7999999999998765433   1234556677763  79999999


Q ss_pred             cCCCchHHHHHHHHH
Q 010548          160 TMIQVPDVFYYAQKA  174 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~  174 (507)
                      +|.|++++++.|.+.
T Consensus       150 ~g~gi~el~~~i~~~  164 (256)
T 3iby_A          150 KNIGIPALQQSLLHC  164 (256)
T ss_dssp             GTBSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999999887

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.83  E-value=1.4e-20  Score=183.06  Aligned_cols=156  Identities=14%  Similarity=0.116  Sum_probs=112.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh----------hhHHh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG----------KLNEE   79 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~   79 (507)
                      +.++|+++|++|||||||+|+|++..+... .+++... .....+...+..+.+|||||+..+..          ....+
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSE-EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEE-EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            468999999999999999999998874222 2221111 12223344567899999999876552          12223


Q ss_pred             --hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        80 --~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                        .+.+|++|+|+|+++.++...    |...+...  ++|+++|+||+|+......   ......+.+.++.  +++++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg~--~~i~~S  149 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQNI---RIEIDALSARLGC--PVIPLV  149 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTTE---EECHHHHHHHHTS--CEEECC
T ss_pred             HhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhhH---HHHHHHHHHhcCC--CEEEEE
Confidence              379999999999998654332    55556555  7999999999998754333   1234566677763  799999


Q ss_pred             cccCCCchHHHHHHHHHHcCC
Q 010548          158 ATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~~  178 (507)
                      |++|.|++++++.|.+.+...
T Consensus       150 A~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          150 STRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             CGGGHHHHHHHHHHHTCCCCC
T ss_pred             cCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999998876543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.83  E-value=2.9e-20  Score=180.66  Aligned_cols=157  Identities=15%  Similarity=0.070  Sum_probs=113.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh------hhHHhh--c
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG------KLNEEL--K   81 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~   81 (507)
                      +.+||+++|++|||||||+|+|++..+... .++.... .....+...+..+.+|||||+..+..      ....++  .
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVE-KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCE-EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEE-eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            468999999999999999999998875222 2221111 12223334567899999999887655      344555  7


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      .+|++++|+|+++...  . . +|...+.... .+|+++|+||+|+...... .  .....+.+.++.  +++++||++|
T Consensus        81 ~~d~vi~v~D~~~~~~--~-~-~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~-~--~~~~~l~~~lg~--~~~~~Sa~~g  150 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR--N-L-FLTLELFEME-VKNIILVLNKFDLLKKKGA-K--IDIKKMRKELGV--PVIPTNAKKG  150 (271)
T ss_dssp             CCSEEEEEEEGGGHHH--H-H-HHHHHHHHTT-CCSEEEEEECHHHHHHHTC-C--CCHHHHHHHHSS--CEEECBGGGT
T ss_pred             CCcEEEEEecCCcchh--h-H-HHHHHHHhcC-CCCEEEEEEChhcCccccc-H--HHHHHHHHHcCC--cEEEEEeCCC
Confidence            8999999999988632  2 2 2555555541 3999999999998654333 1  125667777774  7999999999


Q ss_pred             CCchHHHHHHHHHHcCC
Q 010548          162 IQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~~~  178 (507)
                      .|++++++.+.+.+...
T Consensus       151 ~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          151 EGVEELKRMIALMAEGK  167 (271)
T ss_dssp             BTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999987544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.83  E-value=1.2e-20  Score=195.82  Aligned_cols=161  Identities=16%  Similarity=0.144  Sum_probs=115.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCCCCCeeeCCcccCCceEEEEEeCCCCc----------cchhhhH-
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVP--EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL----------ENKGKLN-   77 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~-   77 (507)
                      ..+||+++|++|||||||+|+|++..+.  ..++++.... ....+...+..+.+|||||+.          .+..... 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~-~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA-VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee-eEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            4689999999999999999999988752  2223211110 122333456789999999973          3333322 


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEEE
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVE  155 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  155 (507)
                      .+++.+|++++|+|++++.++++..  |...+...  ++|+++|+||+|+...+.. ...+....+...+..  ..++++
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSCCCTT-HHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHHc--CCcEEEEEECccCCCcchH-HHHHHHHHHHHhcccCCCCCEEE
Confidence            5789999999999999999888864  88877765  7999999999999876544 233333444444432  237999


Q ss_pred             eCcccCCCchHHHHHHHHHHcC
Q 010548          156 CSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      |||++|.|++++|+.+.+.+..
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887643

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.81  E-value=6.1e-20  Score=172.10  Aligned_cols=152  Identities=18%  Similarity=0.275  Sum_probs=102.7

Q ss_pred             CCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc--
Q 010548            5 SGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR--   82 (507)
Q Consensus         5 ~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--   82 (507)
                      ......+.++|+++|++|||||||+++|++..+....+...+.++.  .+  ....+.+|||||++.+...+..+++.  
T Consensus         5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--DY--DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET--TG--GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE--Ee--eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            3333456799999999999999999999998865433333333322  22  56789999999999998888888877  


Q ss_pred             --CCEEEEEEeCC-ChhhHHHHHHhHHHHHHh-----cCCCCcEEEEEecccCCCCCCccch----hhhhHHHHHHhccc
Q 010548           83 --ADAVVLTYACN-QQSTLSRLSSYWLPELRR-----LEIKVPIIVAGCKLDLRGDHNATSL----EEVMGPIMQQFREI  150 (507)
Q Consensus        83 --ad~il~V~D~~-~~~s~~~~~~~~~~~l~~-----~~~~~piilv~NK~Dl~~~~~~~~~----~~~~~~~~~~~~~~  150 (507)
                        +|++|+|||++ ++.++..... |+..+..     ...++|+++|+||+|+.........    .+....++...+. 
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~-  158 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK-  158 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ccCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc-
Confidence              99999999999 8888888876 5555433     2347999999999999876543111    2334445444442 


Q ss_pred             CcEEEeCcccCCC
Q 010548          151 ETCVECSATTMIQ  163 (507)
Q Consensus       151 ~~~~~~SA~~g~g  163 (507)
                       +++++||++|.+
T Consensus       159 -~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 -SLNEVERKINEE  170 (218)
T ss_dssp             -HHHC--------
T ss_pred             -cccccccccccc
Confidence             689999998875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=1e-19  Score=189.77  Aligned_cols=161  Identities=16%  Similarity=0.135  Sum_probs=114.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCC----------Cccchhhh
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSS----------SLENKGKL   76 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G----------~~~~~~~~   76 (507)
                      ...+||+++|++|||||||+|+|++...  ......+++|.   ...+...+..+.+|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~--~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEER--VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTT--EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCc--cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4578999999999999999999997652  11222222331   123334567899999999          45555444


Q ss_pred             H-HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548           77 N-EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (507)
Q Consensus        77 ~-~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (507)
                      . .+++.+|++|+|+|++++.+....  .|...+...  ++|+++|+||+|+...+.. ..++....+...+..  ..++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDES-TMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCSS-HHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEEChhcCCCchH-HHHHHHHHHHHhcccCCCCCE
Confidence            4 478999999999999987654443  377777775  7999999999999876554 333333333333321  2379


Q ss_pred             EEeCcccCCCchHHHHHHHHHHcC
Q 010548          154 VECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      ++|||++|.||+++|+.|.+.+..
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999987643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.78  E-value=4.3e-19  Score=177.17  Aligned_cols=160  Identities=15%  Similarity=0.166  Sum_probs=114.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCC-ceEEEEEeCCCCcc----chhhhHHh---hccC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLE----NKGKLNEE---LKRA   83 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~----~~~~~~~~---~~~a   83 (507)
                      .+|+|+|.+|||||||+|+|++.+... .++.+.-..+.. .+... ...+.+|||||+.+    +..+...+   ++.+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            368999999999999999999876321 222111110110 12222 36899999999643    33343444   4569


Q ss_pred             CEEEEEEeCCC---hhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           84 DAVVLTYACNQ---QSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        84 d~il~V~D~~~---~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      |++|+|+|+++   +.+++++.. |..++....   .++|+++|+||+|+...      .+....+.+.+....++++||
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~iS  310 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS  310 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred             cEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence            99999999998   788888875 888888764   37999999999998742      233455666665323689999


Q ss_pred             cccCCCchHHHHHHHHHHcCCCC
Q 010548          158 ATTMIQVPDVFYYAQKAVLHPTA  180 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~~~~  180 (507)
                      |+++.|++++++.|.+.+.....
T Consensus       311 A~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          311 AVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCCcCHHHHHHHHHHHHhhCcc
Confidence            99999999999999998865443

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.77  E-value=2.2e-19  Score=183.96  Aligned_cols=160  Identities=19%  Similarity=0.187  Sum_probs=109.3

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-----eCCcccCCceEEEEEeCCCCccchhh---
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-----LPPDFYPDRVPVTIIDTSSSLENKGK---   75 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-----~~~~~~~~~~~~~i~Dt~G~~~~~~~---   75 (507)
                      |........++|+|+|++|||||||+|+|++..+...  ...+++|     ....+. ....+.+|||||+..+...   
T Consensus        26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~--~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~  102 (423)
T 3qq5_A           26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV--SDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRL  102 (423)
T ss_dssp             CCC---CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCC
T ss_pred             cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHH
Confidence            3333445678999999999999999999998875321  1112222     111221 2238999999999876543   


Q ss_pred             ----hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccC
Q 010548           76 ----LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIE  151 (507)
Q Consensus        76 ----~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (507)
                          ...+++.+|++|+|+|++...    ....|+..+++.  ++|+++|+||+|+......    +....+...++.  
T Consensus       103 ~~~~~~~~l~~aD~vllVvD~~~~~----~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g~--  170 (423)
T 3qq5_A          103 RVEKARRVFYRADCGILVTDSAPTP----YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE----ELKGLYESRYEA--  170 (423)
T ss_dssp             CHHHHHHHHTSCSEEEEECSSSCCH----HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT----HHHHHSSCCTTC--
T ss_pred             HHHHHHHHHhcCCEEEEEEeCCChH----HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH----HHHHHHHHHcCC--
Confidence                346889999999999983322    223488888887  8999999999999876443    333444444543  


Q ss_pred             cEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          152 TCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       152 ~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      +++++||++|.|++++++.|.+.+...
T Consensus       171 ~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          171 KVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            789999999999999999999988543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.77  E-value=3e-18  Score=175.93  Aligned_cols=170  Identities=16%  Similarity=0.126  Sum_probs=116.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC--C----------CCCCCeeeCC---ccc-----CCceEEEEEeCC
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKV--P----------PVHAPTRLPP---DFY-----PDRVPVTIIDTS   67 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~--~----------~~~~~~t~~~---~~~-----~~~~~~~i~Dt~   67 (507)
                      ...+.++|+++|++|+|||||+++|++.......  .          ......+...   ...     .....+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3456799999999999999999999985432210  0          0001111100   001     112789999999


Q ss_pred             CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh
Q 010548           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF  147 (507)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  147 (507)
                      |++.+.......+..+|++|+|+|++++.+.....+ |+..++... .+|+++|+||+|+.+........+.+..+...+
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999875665554 666666553 369999999999976422100111222222221


Q ss_pred             c-ccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          148 R-EIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       148 ~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      + ...+++++||++|.|++++++.|.+.+..+.
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            1 1237999999999999999999998775443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.77  E-value=2.6e-18  Score=178.30  Aligned_cols=158  Identities=17%  Similarity=0.159  Sum_probs=108.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh------------
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK------------   75 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~------------   75 (507)
                      ..+||+|+|++|||||||+|+|++....  .....+++|   ....+...+..+.+|||+|+......            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~--~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERA--LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTE--EECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCccc--ccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            4689999999999999999999987641  122222233   12233345668999999997533221            


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcE
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETC  153 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~  153 (507)
                      ...+++.+|++++|+|++++.+..+..  +...+...  ++|+++|+||+|+...+.. ...+....+...+..  ..++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~~~--~~~~ilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQR--MAGLMERR--GRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHHT--TCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECccCCCchhh-HHHHHHHHHHHHhccCCCCcE
Confidence            135788999999999999887766532  55556655  7999999999999765432 222223333344332  2379


Q ss_pred             EEeCcccCCCchHHHHHHHHHH
Q 010548          154 VECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      +++||++|.|++++|+.+.+.+
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~  353 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAY  353 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998765

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.76  E-value=1.8e-19  Score=189.10  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=114.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---ccc-CCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFY-PDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      +..+|+++|++|+|||||+++|.+..+.....   +++|...   .+. ..+..+.+|||||++.|..++..+++.+|++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~---~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~v   79 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA---GGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIV   79 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSS---CCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccC---CceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEE
Confidence            45789999999999999999999766533321   1222111   111 2456899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH---HHHhcccCcEEEeCcccCCC
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI---MQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~SA~~g~g  163 (507)
                      |+|+|++++...+...  ++..+...  ++|+++|+||+|+...... ........+   ...++...+++++||++|.|
T Consensus        80 ILVVDa~dg~~~qt~e--~l~~~~~~--~vPiIVViNKiDl~~~~~~-~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G  154 (537)
T 3izy_P           80 ILVVAADDGVMKQTVE--SIQHAKDA--HVPIVLAINKCDKAEADPE-KVKKELLAYDVVCEDYGGDVQAVHVSALTGEN  154 (537)
T ss_dssp             EEECBSSSCCCHHHHH--HHHHHHTT--TCCEEECCBSGGGTTTSCC-SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred             EEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEecccccccchH-HHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999999987666654  44555554  7899999999999764322 111111111   12222223789999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      ++++++.|...+.
T Consensus       155 I~eLle~I~~l~~  167 (537)
T 3izy_P          155 MMALAEATIALAE  167 (537)
T ss_dssp             SHHHHHHHHHHHT
T ss_pred             chhHHHHHHHhhh
Confidence            9999999988764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.76  E-value=3.9e-18  Score=172.25  Aligned_cols=158  Identities=17%  Similarity=0.144  Sum_probs=110.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchh---------hhHHh
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG---------KLNEE   79 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~   79 (507)
                      ...++|+++|.+|||||||+|+|++..+... .+........ ..+...+..+.+|||||......         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINV-GQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEE-EEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeE-EEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            4568999999999999999999998764211 2221111111 12223467899999999854321         11233


Q ss_pred             hccCCEEEEEEeCCChh--hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           80 LKRADAVVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~--s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      ...+|++++|+|++++.  +++.... |+..+.....++|+++|+||+|+......    +....++...+  .++++||
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~--~~~~~iS  316 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEFKDLPFLVVINKIDVADEENI----KRLEKFVKEKG--LNPIKIS  316 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHTTTSCEEEEECCTTTCCHHHH----HHHHHHHHHTT--CCCEECB
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhcCCCCEEEEEECcccCChHHH----HHHHHHHHhcC--CCeEEEe
Confidence            45799999999999876  6777664 88888775447999999999999753221    22333333433  2689999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 010548          158 ATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i  175 (507)
                      |++|.|+++++++|.+.+
T Consensus       317 A~~g~gi~~l~~~i~~~l  334 (357)
T 2e87_A          317 ALKGTGIDLVKEEIIKTL  334 (357)
T ss_dssp             TTTTBTHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999999998876

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.76  E-value=2e-18  Score=170.05  Aligned_cols=157  Identities=19%  Similarity=0.146  Sum_probs=108.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCc-c--------chhhhH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSL-E--------NKGKLN   77 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~-~--------~~~~~~   77 (507)
                      .+..+|+|+|++|||||||+|+|++..+..  .+..+.+|.   ...+...+..+.+|||||+. .        +.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            345689999999999999999999987532  111122221   11233457889999999986 2        222334


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           78 EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      .+++.+|++++|+|+++ -+..  ...+...+...  +.|+++|+||+|+.....  ...+.+..+...++. ..++++|
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~--~~~~~l~~l~~~~~~-~~~i~iS  155 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPD--DEMVLNKLREG--KAPVILAVNKVDNVQEKA--DLLPHLQFLASQMNF-LDIVPIS  155 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHH--HHHHHHHHHSS--SSCEEEEEESTTTCCCHH--HHHHHHHHHHTTSCC-SEEEECC
T ss_pred             HHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHHhc--CCCEEEEEECcccCccHH--HHHHHHHHHHHhcCc-CceEEEE
Confidence            67889999999999977 3332  22244455543  799999999999875211  123344455554442 2689999


Q ss_pred             cccCCCchHHHHHHHHHHc
Q 010548          158 ATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~  176 (507)
                      |++|.|++++++.|.+.+.
T Consensus       156 A~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          156 AETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTTTTTHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHhCC
Confidence            9999999999999987654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.75  E-value=3e-18  Score=165.31  Aligned_cols=170  Identities=15%  Similarity=0.140  Sum_probs=106.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCC-CCCeeeCCcccCCceEEEEEeCCCCccchhh-----------
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATES-VPEKVPPV-HAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-----------   75 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~-~~~~~~~~-~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   75 (507)
                      ..+.++|+|+|++|||||||+|+|++.. +.....+. .........+.+.+..+.||||||+..+...           
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999999877 33222221 1001111123355788999999998654321           


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEe-cccCCCCCCccchh-------hhhHHHH
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGC-KLDLRGDHNATSLE-------EVMGPIM  144 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~N-K~Dl~~~~~~~~~~-------~~~~~~~  144 (507)
                      ...+++.+|++|+|+|+++....   ...+...+.+..   ...|+++|+| |+|+.... .  ..       ..+..+.
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~---~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~--~~~i~~~~~~~~~~~~  172 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQ---DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-L--MDYMHDSDNKALSKLV  172 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHH---HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-H--HHHHHHCCCHHHHHHH
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHH---HHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-H--HHHHHhcchHHHHHHH
Confidence            22367899999999999862222   221333343321   1356666666 99997532 1  11       2233355


Q ss_pred             HHhcccC-cE--EEeCcccCCCchHHHHHHHHHHcCCCCCCCc
Q 010548          145 QQFREIE-TC--VECSATTMIQVPDVFYYAQKAVLHPTAPLFD  184 (507)
Q Consensus       145 ~~~~~~~-~~--~~~SA~~g~gi~~l~~~i~~~i~~~~~~~~~  184 (507)
                      ..++... .+  +++||++|.|++++|+.|.+.+.......+.
T Consensus       173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~  215 (260)
T 2xtp_A          173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYT  215 (260)
T ss_dssp             HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCC
Confidence            5554311 12  7899999999999999999988654434443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.74  E-value=6.3e-18  Score=176.91  Aligned_cols=164  Identities=15%  Similarity=0.144  Sum_probs=110.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccchhhhHHhhc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATES----VPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENKGKLNEELK   81 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~----~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   81 (507)
                      .++.++|+++|++++|||||+++|++..    ..........+.|+..   .+...+..+.+|||||++.+...+...+.
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence            3567999999999999999999999876    1111111222333222   12235689999999999988888888999


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-cc-cCcEEEeCcc
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-RE-IETCVECSAT  159 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~SA~  159 (507)
                      .+|++|+|+|++++...+...  ++..++..  ++|+++|+||+|+.+........+.+..+.... +. ..+++++||+
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~  171 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  171 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hCCEEEEEEecCCCccHHHHH--HHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence            999999999999843222222  33344444  789999999999976321101223333443333 11 2379999999


Q ss_pred             cCCCchHHHHHHHHHHc
Q 010548          160 TMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       160 ~g~gi~~l~~~i~~~i~  176 (507)
                      +|.|++++++.|.+.+.
T Consensus       172 ~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          172 TGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhc
Confidence            99999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.3e-17  Score=152.78  Aligned_cols=120  Identities=20%  Similarity=0.277  Sum_probs=87.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc----CC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR----AD   84 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~----ad   84 (507)
                      ..+.++|+++|++|||||||+++|++..+....++..+.++.    ......+.+|||||+..+...+..+++.    +|
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  120 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK  120 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence            356789999999999999999999998865433332222222    1256789999999999887777777765    89


Q ss_pred             EEEEEEeCC-ChhhHHHHHHhHHHHHHh-----cCCCCcEEEEEecccCCCCCCc
Q 010548           85 AVVLTYACN-QQSTLSRLSSYWLPELRR-----LEIKVPIIVAGCKLDLRGDHNA  133 (507)
Q Consensus        85 ~il~V~D~~-~~~s~~~~~~~~~~~l~~-----~~~~~piilv~NK~Dl~~~~~~  133 (507)
                      ++|+|||++ +..++..+.. |+..+..     ...++|+++|+||+|+......
T Consensus       121 ~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          121 GLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             EEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             EEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence            999999999 8889988876 5544432     2247999999999999876543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.73  E-value=3.3e-17  Score=168.43  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=102.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--------------------c--CC----ceEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--------------------Y--PD----RVPVTI   63 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~--------------------~--~~----~~~~~i   63 (507)
                      .+.++|+++|+.++|||||+++|++...........++.|+...+                    .  ..    ...+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            456999999999999999999999653211111111222322111                    0  01    268999


Q ss_pred             EeCCCCccchhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh
Q 010548           64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV  139 (507)
Q Consensus        64 ~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~----~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~  139 (507)
                      |||||++.+...+...+..+|++|+|+|++++    ++.+.+.     .++... ..|+++|+||+|+..........++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~l~-~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-----ALEILG-IDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-----HHHHTT-CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-----HHHHcC-CCeEEEEEEccCCCCHHHHHHHHHH
Confidence            99999988877777777888999999999964    3444332     233332 3589999999999875432112233


Q ss_pred             hHHHHHHhc-ccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          140 MGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       140 ~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      +..+...+. ...+++++||++|.|++++++.|.+.+..+.
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~  200 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK  200 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence            444444321 1237999999999999999999998775443

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.72  E-value=2.1e-17  Score=171.11  Aligned_cols=158  Identities=16%  Similarity=0.101  Sum_probs=105.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--C--------------------------CCCCCCeeeC---CcccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK--V--------------------------PPVHAPTRLP---PDFYPD   57 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~--------------------------~~~~~~~t~~---~~~~~~   57 (507)
                      ....++|+++|++|+|||||+++|+.......  .                          .....++|+.   ..+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            45679999999999999999999965431100  0                          0001223321   123456


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhH---H---HHHHhHHHHHHhcCCCCc-EEEEEecccCCCC
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL---S---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGD  130 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~---~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~  130 (507)
                      +..+.+|||||+++|...+..+++.+|++|+|+|++++...   +   ...+ .+..+...  ++| +|+|+||+|+...
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~~~--~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKTA--GVKHLIVLINKMDDPTV  170 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHHHc--CCCeEEEEeecCCCccc
Confidence            77999999999999998888999999999999999986421   1   1111 33334444  667 9999999999642


Q ss_pred             CC----ccchhhhhHHHHHHhcc----cCcEEEeCcccCCCchHHHH
Q 010548          131 HN----ATSLEEVMGPIMQQFRE----IETCVECSATTMIQVPDVFY  169 (507)
Q Consensus       131 ~~----~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ..    .....+.+..+...++.    ..+++++||++|.|+.++.+
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            11    00122333444444442    23699999999999999655

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.72  E-value=2.2e-17  Score=166.42  Aligned_cols=163  Identities=17%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             ceE-EEEEcCCCCCHHHHHHHHhcCCCCCC-CCC-CCCCeeeCCcccCCceEEEEEeCCCCccc--hh------hhHHhh
Q 010548           12 GVR-VVVVGDRGTGKSSLIAAAATESVPEK-VPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN--KG------KLNEEL   80 (507)
Q Consensus        12 ~~k-V~ivG~~~vGKSSLin~l~~~~~~~~-~~~-~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~--~~------~~~~~~   80 (507)
                      .++ |+|+|.+|||||||+|+|++..+... .+. +...++.  .+...+..+.+|||+|....  ..      .....+
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~--~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~  255 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY--AIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEA  255 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--EEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--EEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHH
Confidence            456 99999999999999999998774221 111 1111111  22234478899999996321  11      122357


Q ss_pred             ccCCEEEEEEeCCChh--hHHHHHHhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHh-cccCcEEEe
Q 010548           81 KRADAVVLTYACNQQS--TLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF-REIETCVEC  156 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~--s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  156 (507)
                      ..+|++++|+|++++.  ....+.. |...++... .++|+|+|+||+|+...... ........+...+ ....+++++
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQS-SFEILREIGVSGKPILVTLNKIDKINGDLY-KKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHHTCCSCCEEEEEECGGGCCSCHH-HHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHhCcCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHhcCCCCcEEEE
Confidence            8999999999999876  4555443 666666543 47899999999998754211 1111222333444 211257999


Q ss_pred             CcccCCCchHHHHHHHHHHcCC
Q 010548          157 SATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      ||++|.|++++++.|.+.+..+
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHHhccc
Confidence            9999999999999998876543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.72  E-value=2.4e-17  Score=156.94  Aligned_cols=163  Identities=15%  Similarity=0.127  Sum_probs=101.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCcc-----------chhh
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLE-----------NKGK   75 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~   75 (507)
                      ...+||+|+|++|||||||+|+|++..+.....+. ..+|   ....+...+..+.+|||||...           +...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA-KSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCC-CceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            45799999999999999999999998764332110 0111   1122334567899999999643           2223


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc---CCCCcEEEEEecccCCCCCCccc----hhhhhHHHHHHhc
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL---EIKVPIIVAGCKLDLRGDHNATS----LEEVMGPIMQQFR  148 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~  148 (507)
                      ...+++.+|++|+|+|+++.... ..  .|+..+.+.   ....|+++|+||+|+........    ..+.+..+...++
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~-~~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEE-EH--KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSH-HH--HHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHH-HH--HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence            33456788999999998764332 21  144333321   12469999999999876543310    1234666777777


Q ss_pred             ccCcEEEeCccc-----CCCchHHHHHHHHHHcCC
Q 010548          149 EIETCVECSATT-----MIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       149 ~~~~~~~~SA~~-----g~gi~~l~~~i~~~i~~~  178 (507)
                      .  .++.+++..     +.++.++++.+.+.+...
T Consensus       183 ~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          183 D--RYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             S--SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C--EEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            5  466666653     378999999888877443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.72  E-value=1e-17  Score=176.52  Aligned_cols=116  Identities=11%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-------------CCCC------CCCee---eCCcccCCceEEEEEeCCC
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-------------VPPV------HAPTR---LPPDFYPDRVPVTIIDTSS   68 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-------------~~~~------~~~~t---~~~~~~~~~~~~~i~Dt~G   68 (507)
                      +..+|+|+|++|||||||+++|+.......             ....      ..++|   ....+.+.++.++||||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            457999999999999999999973221000             0000      01111   1123345678999999999


Q ss_pred             CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      +.++......+++.+|++|+|+|++++.+.....  ++..+...  ++|+++|+||+|+...
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence            9999999999999999999999999987777665  55556655  7999999999999754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.72  E-value=3.9e-17  Score=160.68  Aligned_cols=160  Identities=16%  Similarity=0.144  Sum_probs=103.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------------------eeeC-------------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAP----------------------TRLP-------------   51 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~----------------------~t~~-------------   51 (507)
                      ...++|+|+|++|||||||+|+|++..+.+.   ..+..+.                      ++..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            4567999999999999999999999886422   1111221                      1100             


Q ss_pred             ----Ccc----------cCCceEEEEEeCCCCcc-------------chhhhHHhhccCCEEE-EEEeCCChhhHHHHHH
Q 010548           52 ----PDF----------YPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVV-LTYACNQQSTLSRLSS  103 (507)
Q Consensus        52 ----~~~----------~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il-~V~D~~~~~s~~~~~~  103 (507)
                          ..+          ......+.+|||||+..             +..+...+++.++.++ +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                000          01136899999999742             3345567888888766 7999988655444322


Q ss_pred             hHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc-ccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       104 ~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                       |+..+...  ++|+++|+||+|+......  ..+........+. ...+++++||++|.|++++++.|.+.
T Consensus       184 -~~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 -IAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             -HHHHHCTT--CSSEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             -HHHHhCCC--CCeEEEEEEccccCCCCch--HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence             55555543  7899999999999765332  1111111000010 11257899999999999999998874

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.71  E-value=3e-18  Score=178.47  Aligned_cols=157  Identities=16%  Similarity=0.170  Sum_probs=107.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee---CCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL---PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ++..+|+++|++++|||||+++|.+..+.....   +++|.   ...+...+..+.+|||||++.|..++...+..+|++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~---~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~a   78 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA---GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIV   78 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB---CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccC---CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEE
Confidence            355799999999999999999998755432211   11221   112334567899999999999999888899999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh---hHHHHHHhcccCcEEEeCcccCCC
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV---MGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      |+|+|++++...+...  .+..++..  ++|+++++||+|+...... .....   ...+...++...+++++||++|.|
T Consensus        79 ILVVda~~g~~~qT~e--~l~~~~~~--~vPiIVviNKiDl~~~~~~-~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           79 VLVVAADDGVMPQTIE--AIQHAKAA--QVPVVVAVNKIDKPEADPD-RVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEEEETTTBSCTTTHH--HHHHHHHT--TCCEEEEEECSSSSTTCCC-CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EEEeecccCccHHHHH--HHHHHHhc--CceEEEEEEeccccccCHH-HHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            9999999853322222  22334444  7899999999999753211 01111   111122333234799999999999


Q ss_pred             chHHHHHHHHH
Q 010548          164 VPDVFYYAQKA  174 (507)
Q Consensus       164 i~~l~~~i~~~  174 (507)
                      ++++++.|...
T Consensus       154 I~eLle~I~~~  164 (501)
T 1zo1_I          154 IDELLDAILLQ  164 (501)
T ss_dssp             CTTHHHHTTTT
T ss_pred             cchhhhhhhhh
Confidence            99999998653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.71  E-value=5.4e-18  Score=166.97  Aligned_cols=134  Identities=10%  Similarity=0.066  Sum_probs=100.2

Q ss_pred             HHHHHHhcCCCC-CCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHh
Q 010548           27 SLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSY  104 (507)
Q Consensus        27 SLin~l~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~  104 (507)
                      +|+.+++.+.|. ..+.++...... ..+..++ ++.+|||  ++++..+.+.+++++|++|+|||++++. ++..+.. 
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~-  106 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK-  106 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH-
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH-
Confidence            688888888887 565554443221 2222223 7899999  8889999999999999999999999997 6777765 


Q ss_pred             HHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHH
Q 010548          105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYA  171 (507)
Q Consensus       105 ~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i  171 (507)
                      |+..++..  ++|+++|+||+|+.+.+.+    ++...++..++...++++|||++|.||+++|..+
T Consensus       107 ~l~~~~~~--~~piilv~NK~DL~~~~~v----~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l  167 (301)
T 1u0l_A          107 FLVLAEKN--ELETVMVINKMDLYDEDDL----RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL  167 (301)
T ss_dssp             HHHHHHHT--TCEEEEEECCGGGCCHHHH----HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHHC--CCCEEEEEeHHHcCCchhH----HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence            98888764  8999999999999753221    2344555555421379999999999999988653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.70  E-value=7.9e-17  Score=171.66  Aligned_cols=161  Identities=17%  Similarity=0.196  Sum_probs=111.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCC-------CCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPE-------KVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSL   70 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~-------~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~   70 (507)
                      +..+|+|+|+.++|||||+++|+......       .+...     ..+.|+.     ..+   +...+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45789999999999999999998632110       01000     1122221     111   2335889999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      +|...+..+++.+|++|+|+|++++.+.+.... |...+. .  ++|+|+|+||+|+...+    .......+...++..
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-~--~ipiIvViNKiDl~~a~----~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-M--DLEVVPVLNKIDLPAAD----PERVAEEIEDIVGID  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-T--TCEEEEEEECTTSTTCC----HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-C--CCCEEEeeeccCccccc----HHHHHHHHHHHhCCC
Confidence            999999999999999999999999877777654 554443 3  78999999999997642    233445565555431


Q ss_pred             -CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          151 -ETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       151 -~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                       ..++++||++|.|++++++.|.+.+..+.
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence             25899999999999999999999886554

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.70  E-value=1.2e-16  Score=169.93  Aligned_cols=161  Identities=14%  Similarity=0.176  Sum_probs=113.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCC--CCC-----CCCCC-----CCCeeeC-----Ccc---cCCceEEEEEeCCCCc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATES--VPE-----KVPPV-----HAPTRLP-----PDF---YPDRVPVTIIDTSSSL   70 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~--~~~-----~~~~~-----~~~~t~~-----~~~---~~~~~~~~i~Dt~G~~   70 (507)
                      +..+|+|+|+.++|||||+++|+...  +..     .+...     ..+.|+.     ..+   +...+.+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            45789999999999999999998632  110     00000     1122221     111   2335789999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      +|......+++.+|++|+|+|++++.+.+.... |.... ..  ++|+|+|+||+|+...+    .......+...++..
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~-~~--~ipiIvviNKiDl~~a~----~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAV-EQ--DLVIIPVINKIDLPSAD----VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHH-HT--TCEEEEEEECTTSTTCC----HHHHHHHHHHTSCCC
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHH-HC--CCCEEEEEeccCccccC----HHHHHHHHHHhhCCC
Confidence            999888999999999999999999988777664 55443 33  79999999999997642    233445555555431


Q ss_pred             -CcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          151 -ETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       151 -~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                       .+++++||++|.||+++++.|.+.+..+.
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhccccc
Confidence             24899999999999999999999886554

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.70  E-value=4.7e-17  Score=167.44  Aligned_cols=165  Identities=17%  Similarity=0.155  Sum_probs=108.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc--------------------c--CC----ceEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--------------------Y--PD----RVPVT   62 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~--------------------~--~~----~~~~~   62 (507)
                      ..+.++|+++|+.++|||||+++|++............+.|+...+                    .  ..    ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            3456899999999999999999999653211111111222221111                    0  01    26899


Q ss_pred             EEeCCCCccchhhhHHhhccCCEEEEEEeCCCh----hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhh
Q 010548           63 IIDTSSSLENKGKLNEELKRADAVVLTYACNQQ----STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE  138 (507)
Q Consensus        63 i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~----~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~  138 (507)
                      +|||||++.|.......+..+|++|+|+|++++    ++.+.+.     .++... ..|+++|+||+|+..........+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-----ALQIIG-QKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-----HHHHHT-CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-----HHHHcC-CCcEEEEEECccCCCHHHHHHHHH
Confidence            999999988887777788899999999999964    3444332     233332 368999999999976422101112


Q ss_pred             hhHHHHHHh-cccCcEEEeCcccCCCchHHHHHHHHHHcCCC
Q 010548          139 VMGPIMQQF-REIETCVECSATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      .+..+.... ....+++++||++|.|++++++.|.+.+..+.
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence            233333321 11237999999999999999999998775543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.70  E-value=3.8e-17  Score=167.81  Aligned_cols=166  Identities=15%  Similarity=0.198  Sum_probs=114.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--CCCC----CCCeeeC---CcccCCceEEEEEeCCCCcc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATE--------SVPEK--VPPV----HAPTRLP---PDFYPDRVPVTIIDTSSSLE   71 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~--------~~~~~--~~~~----~~~~t~~---~~~~~~~~~~~i~Dt~G~~~   71 (507)
                      .++.++|+++|++|+|||||+++|++.        .+...  ....    ..+.|+.   ..+...+..+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            356799999999999999999999873        11100  0000    1112211   12345678899999999999


Q ss_pred             chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc
Q 010548           72 NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE  149 (507)
Q Consensus        72 ~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~  149 (507)
                      |......+++.+|++|+|+|++++...+...  |+..++..  ++| +++|+||+|+...... .........+...++.
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~--~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            9888889999999999999999876544432  66666665  788 8999999999752111 0112344555555542


Q ss_pred             ---cCcEEEeCcccCCC------------------chHHHHHHHHHHcCC
Q 010548          150 ---IETCVECSATTMIQ------------------VPDVFYYAQKAVLHP  178 (507)
Q Consensus       150 ---~~~~~~~SA~~g~g------------------i~~l~~~i~~~i~~~  178 (507)
                         ..+++++||++|.|                  +.++++.|.+.+..+
T Consensus       164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence               24799999999987                  777887777765433

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.69  E-value=1.6e-16  Score=164.45  Aligned_cols=156  Identities=17%  Similarity=0.118  Sum_probs=105.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCC--CCC----------CCCCC------------------CCeeeCC---ccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESV--PEK----------VPPVH------------------APTRLPP---DFY   55 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~--~~~----------~~~~~------------------~~~t~~~---~~~   55 (507)
                      ..+.++|+++|++|+|||||+++|++...  ...          .+++.                  .+.|+..   .+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            34568999999999999999999986541  110          00110                  1112111   123


Q ss_pred             CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCC-cEEEEEecccCCCCCCc-
Q 010548           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-PIIVAGCKLDLRGDHNA-  133 (507)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~-piilv~NK~Dl~~~~~~-  133 (507)
                      ..+..+.+|||||+++|...+..++..+|++|+|+|++++...+...  ++..++..  +. |+|+|+||+|+.+.... 
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~--~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence            45678999999999999888888999999999999999875444332  55555554  44 69999999999763211 


Q ss_pred             -cchhhhhHHHHHHhc---ccCcEEEeCcccCCCchHHH
Q 010548          134 -TSLEEVMGPIMQQFR---EIETCVECSATTMIQVPDVF  168 (507)
Q Consensus       134 -~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~  168 (507)
                       ....+....+.+.++   ...+++++||++|.|+++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence             012234455555555   11378999999999999854

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.69  E-value=9.2e-17  Score=168.59  Aligned_cols=156  Identities=17%  Similarity=0.120  Sum_probs=100.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCeeeC---CcccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK----------------------------VPPVHAPTRLP---PDFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----------------------------~~~~~~~~t~~---~~~~~~~   58 (507)
                      .+.+||+++|++|+|||||+++|++......                            ......++|+.   ..+...+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3468999999999999999999986521000                            00011122211   1233567


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHH-----HHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSR-----LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~-----~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~  133 (507)
                      ..+.||||||++++......+++.+|++|+|+|++++.++..     ........+... ...|+|+|+||+|+.+.+..
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHH
Confidence            899999999999999999999999999999999999754322     111133333333 13579999999999864322


Q ss_pred             cchh---hhhHHHHHHhcc---cCcEEEeCcccCCCchHH
Q 010548          134 TSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPDV  167 (507)
Q Consensus       134 ~~~~---~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l  167 (507)
                       ..+   ..+..+...++.   ..+++++||++|.|+.++
T Consensus       190 -~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          190 -RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             -HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             -HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence             222   223333333332   237899999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.69  E-value=6.8e-17  Score=176.08  Aligned_cols=232  Identities=12%  Similarity=0.072  Sum_probs=148.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCCC-------CCCC------CCCeeeCC---cccCCceEEEEEeCCCCc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK-------VPPV------HAPTRLPP---DFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~-------~~~~------~~~~t~~~---~~~~~~~~~~i~Dt~G~~   70 (507)
                      ..+..+|+|+|++|+|||||+|+|+..  .+...       ....      ..++|+..   .+.+.++.+++|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            355789999999999999999999952  21100       0000      11222221   233457899999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      ++......+++.+|++|+|+|++++.+.....  ++..+...  ++|+++|+||+|+....    .......+...++..
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~--~~~~~~~~--~~p~ilviNK~Dl~~~~----~~~~~~~l~~~l~~~  158 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTET--VWRQATTY--GVPRIVFVNKMDKLGAN----FEYSVSTLHDRLQAN  158 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHH--HHHHHHHc--CCCEEEEEECCCccccc----hHHHHHHHHHHhCCC
Confidence            99888999999999999999999987777655  34456555  79999999999997642    233445555555431


Q ss_pred             --CcEEEeCcccCCCchHHHHHHHHHHcCCC-C--CCCc-----cchhcccHHHHHHHHHHHhhccCC------CCCccC
Q 010548          151 --ETCVECSATTMIQVPDVFYYAQKAVLHPT-A--PLFD-----HDEQTLKPRCVRALKRIFIICDHD------MDGALN  214 (507)
Q Consensus       151 --~~~~~~SA~~g~gi~~l~~~i~~~i~~~~-~--~~~~-----~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~  214 (507)
                        ...+++|+  +.|+..+++.+........ .  ..+.     .......+..+..+.+.....|++      ++..++
T Consensus       159 ~~~~~ipisa--~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~  236 (693)
T 2xex_A          159 AAPIQLPIGA--EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEIS  236 (693)
T ss_dssp             EEESEEEECC--GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCC
T ss_pred             ceeEEeeccc--CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCC
Confidence              24688888  6667666655433222111 0  0000     000011222333333333323321      355688


Q ss_pred             hhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548          215 DAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV  250 (507)
Q Consensus       215 ~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~  250 (507)
                      .+++....++          +|++++...+++.+++.|.+.+|+-.
T Consensus       237 ~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~  282 (693)
T 2xex_A          237 VSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPL  282 (693)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGG
T ss_pred             HHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCch
Confidence            8888877764          68899999999999999999999743

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.69  E-value=1e-16  Score=170.99  Aligned_cols=159  Identities=19%  Similarity=0.194  Sum_probs=106.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CCCCCeeeCCc--------------ccCCceEEEEEeCCCCccc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVP----PVHAPTRLPPD--------------FYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~----~~~~~~t~~~~--------------~~~~~~~~~i~Dt~G~~~~   72 (507)
                      +..+|+|+|++|+|||||+++|++..+....+    ...........              +......+++|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999999765432211    11111111100              1112236999999999999


Q ss_pred             hhhhHHhhccCCEEEEEEeCCC---hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc--------------c
Q 010548           73 KGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT--------------S  135 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~---~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~--------------~  135 (507)
                      ..+...+++.+|++|+|+|+++   +.+++.+.     .++..  ++|+++|+||+|+.......              .
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9988889999999999999999   45554433     34444  79999999999997532100              0


Q ss_pred             h----hhhhHHHHHHh----------------cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          136 L----EEVMGPIMQQF----------------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       136 ~----~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      .    .+....+...+                +...+++++||++|.|+++++++|...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0    00011111111                12237999999999999999999987653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.68  E-value=3.3e-17  Score=167.77  Aligned_cols=164  Identities=16%  Similarity=0.145  Sum_probs=114.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCC-------CCCC--CCC----CCCCeeeCC---cccCCceEEEEEeCCCCccchh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATES-------VPEK--VPP----VHAPTRLPP---DFYPDRVPVTIIDTSSSLENKG   74 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~-------~~~~--~~~----~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~   74 (507)
                      +.+||+++|++++|||||+++|++..       +...  ...    ...+.|+..   .+...+..+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998741       1000  000    012333221   2345678899999999998888


Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc---
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE---  149 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~---  149 (507)
                      .+..+++.+|++|+|+|++++...+...  ++..++..  ++| +++|+||+|+...... ....++...+...++.   
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e--~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            8888999999999999999875554433  33555554  788 7899999999752111 0122344556665552   


Q ss_pred             cCcEEEeCcccCCC----------chHHHHHHHHHHcCC
Q 010548          150 IETCVECSATTMIQ----------VPDVFYYAQKAVLHP  178 (507)
Q Consensus       150 ~~~~~~~SA~~g~g----------i~~l~~~i~~~i~~~  178 (507)
                      ..+++++||++|.|          +.++++.|.+.+..+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            23799999999775          889999988876544

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.67  E-value=1.2e-16  Score=149.55  Aligned_cols=84  Identities=18%  Similarity=0.384  Sum_probs=69.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.|||++||++|||||||++||+++.|...+.||.+.++..+.+...+..+++.||||+|+++|.+++  ..|+++++++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~--~~~~~~a~~~   89 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI--PSYIRDSAAA   89 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH--HHHHTTCSEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH--HHHhccccEE
Confidence            45899999999999999999999999999999999999988888898888999999999999999998  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        90 ilv~di   95 (216)
T 4dkx_A           90 VVVYDI   95 (216)
T ss_dssp             EEEEET
T ss_pred             EEEeec
Confidence            999996

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.67  E-value=1.2e-16  Score=155.33  Aligned_cols=158  Identities=16%  Similarity=0.101  Sum_probs=86.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC-C-------CCCCCCeeeCCcc--cCCceEEEEEeCCCCcc-------ch
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK-V-------PPVHAPTRLPPDF--YPDRVPVTIIDTSSSLE-------NK   73 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~-------~~~~~~~t~~~~~--~~~~~~~~i~Dt~G~~~-------~~   73 (507)
                      ..++|+|+|.+|||||||+|+|++...... +       .++.........+  ....+.+.+|||||+..       +.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            368999999999999999999987664322 2       1111111111222  23346999999999742       22


Q ss_pred             hhh-------HHhhcc-------------CCEEEEEEeCCC-hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548           74 GKL-------NEELKR-------------ADAVVLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus        74 ~~~-------~~~~~~-------------ad~il~V~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~  132 (507)
                      ...       ..+++.             +|+++++++.+. +....+  ..+++.+..   ++|+|+|+||+|+.....
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHHH
Confidence            222       334443             789999997665 322233  236666655   799999999999865322


Q ss_pred             ccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .......+.......+  .+++++||+++.|+.++++.|.+.+
T Consensus       162 ~~~~~~~i~~~l~~~~--i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          162 CQQFKKQIMKEIQEHK--IKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHTT--CCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcC--CeEEcCCCCCChhHHHHHHHHhcCC
Confidence            2011112222222333  2689999999999999999998764

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.67  E-value=1.3e-16  Score=173.88  Aligned_cols=232  Identities=11%  Similarity=0.087  Sum_probs=144.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC----CCC-----CC------CCCeeeC---CcccCCceEEEEEeCCCCc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPE----KVP-----PV------HAPTRLP---PDFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~----~~~-----~~------~~~~t~~---~~~~~~~~~~~i~Dt~G~~   70 (507)
                      ..+..+|+|+|++|+|||||+++|+......    .+.     ..      ..+.|+.   ..+.+.++.+++|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            4557899999999999999999998421100    000     00      1122221   1223457899999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (507)
                      ++......+++.+|++|+|+|++++.+...... |. .+...  ++|+++|+||+|+....    .......+...++..
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~-~~~~~--~~p~ivviNKiD~~~~~----~~~~~~~l~~~l~~~  160 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WR-QAEKY--KVPRIAFANKMDKTGAD----LWLVIRTMQERLGAR  160 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HH-HHHHT--TCCEEEEEECTTSTTCC----HHHHHHHHHHTTCCC
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HH-HHHHc--CCCEEEEEECCCcccCC----HHHHHHHHHHHhCCC
Confidence            999899999999999999999999888777652 44 45555  79999999999997642    334455555555431


Q ss_pred             --CcEEEeCcccCCCchHHHHHHHHHHcCCC-C--C-----CCccchhcccHHHHHHHHHHHhhccCC------CCCccC
Q 010548          151 --ETCVECSATTMIQVPDVFYYAQKAVLHPT-A--P-----LFDHDEQTLKPRCVRALKRIFIICDHD------MDGALN  214 (507)
Q Consensus       151 --~~~~~~SA~~g~gi~~l~~~i~~~i~~~~-~--~-----~~~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~  214 (507)
                        ...+++|+  +.++..+++.+........ .  .     ..........+..+..+.+.....|+.      +++.++
T Consensus       161 ~~~~~~Pi~~--~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~  238 (691)
T 1dar_A          161 PVVMQLPIGR--EDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPT  238 (691)
T ss_dssp             EEECEEEESC--GGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCC
T ss_pred             ccceeccccC--CCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCC
Confidence              13578887  4444444333322111110 0  0     000000111122333333333222221      245688


Q ss_pred             hhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548          215 DAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV  250 (507)
Q Consensus       215 ~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~  250 (507)
                      .+++....++          ++++++...+++.+++.|.+.+|+-.
T Consensus       239 ~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~  284 (691)
T 1dar_A          239 EEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPL  284 (691)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTT
T ss_pred             HHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChh
Confidence            8888777764          67889999999999999999999754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.66  E-value=1.7e-16  Score=147.51  Aligned_cols=161  Identities=12%  Similarity=0.040  Sum_probs=99.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC-CcccCCceEEEEEeCCCCcc----------chhhhHH
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP-PDFYPDRVPVTIIDTSSSLE----------NKGKLNE   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   78 (507)
                      .+..+|+++|++|||||||+|+|++..+...+.+. .+.+.. ..+...+ .+.+|||||...          +......
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~-~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT-PGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC-CccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            45689999999999999999999987643332221 122211 0111111 578999999742          1222333


Q ss_pred             hh---ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEE
Q 010548           79 EL---KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVE  155 (507)
Q Consensus        79 ~~---~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (507)
                      ++   +.++++++|+|++++.+.....  +...+...  ++|+++|+||+|+............+..++...+....+++
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  177 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence            44   5789999999999876654321  33344444  78999999999987532110011233444444433336789


Q ss_pred             eCcccCCCchHHHHHHHHHHc
Q 010548          156 CSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       156 ~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      +||+++.|++++++.|.+.+.
T Consensus       178 ~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          178 FSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHC
T ss_pred             EeecCCCCHHHHHHHHHHHHh
Confidence            999999999999999988653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.9e-16  Score=168.43  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=102.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------CC----------------CCCeee---CCcccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVP------------PV----------------HAPTRL---PPDFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~------------~~----------------~~~~t~---~~~~~~~~   58 (507)
                      .+.+||+++|++|||||||+++|++........            ..                ..++|+   ...+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999999764211110            00                012231   22334567


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh---H---HHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---L---SRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s---~---~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~  132 (507)
                      ..+.||||||++.+...+..+++.+|++|+|+|++++..   +   ..... .+..+... ...|+|+|+||+|+...+.
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~l-gi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASSL-GIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHTT-TCCEEEEEEECTTTTTTCH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHHc-CCCeEEEEEecccccchhH
Confidence            899999999999998888889999999999999987521   0   01111 22233333 1245999999999986432


Q ss_pred             ccch---hhhhHHHHHHhcc---cCcEEEeCcccCCCchHH
Q 010548          133 ATSL---EEVMGPIMQQFRE---IETCVECSATTMIQVPDV  167 (507)
Q Consensus       133 ~~~~---~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l  167 (507)
                      . ..   ...+..+...++.   ..++++|||++|.||.++
T Consensus       323 ~-~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 Q-RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             H-HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             H-HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2 11   2233334444432   237999999999999876

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.66  E-value=1.7e-16  Score=160.40  Aligned_cols=145  Identities=17%  Similarity=0.132  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +|+++|++|+|||||+++|+..           +.|+.   ..+...+..+.+|||||+++|.......++.+|++|+|+
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~-----------giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv   91 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK-----------GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCI   91 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE-----------EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhC-----------CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence            8999999999999999999821           12221   123455678999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcE-EEEEe-cccCCCCCCccchhhhhHHHHHHhc-ccCcEEE--eCccc---CC
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGC-KLDLRGDHNATSLEEVMGPIMQQFR-EIETCVE--CSATT---MI  162 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~SA~~---g~  162 (507)
                      | +... .....+ ++..++..  ++|. |+|+| |+|+ +........+++..+...++ ...++++  +||++   |.
T Consensus        92 d-~~g~-~~qt~e-~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           92 P-PQGL-DAHTGE-CIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             C-TTCC-CHHHHH-HHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             c-CCCC-cHHHHH-HHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence            9 5543 333333 66666665  6787 89999 9999 43211001123333333332 1237999  99999   99


Q ss_pred             CchHHHHHHHHHH
Q 010548          163 QVPDVFYYAQKAV  175 (507)
Q Consensus       163 gi~~l~~~i~~~i  175 (507)
                      |++++++.|.+.+
T Consensus       166 gi~~L~~~l~~~~  178 (370)
T 2elf_A          166 GVDELKARINEVA  178 (370)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999998765

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.66  E-value=1.9e-15  Score=164.81  Aligned_cols=234  Identities=12%  Similarity=0.090  Sum_probs=142.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCC--CC-----CC------CCCeeeC---CcccCCc-------eEEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATES--VPEK--VP-----PV------HAPTRLP---PDFYPDR-------VPVTI   63 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~~--~~-----~~------~~~~t~~---~~~~~~~-------~~~~i   63 (507)
                      ..+..+|+|+|+.|+|||||+++|+...  +...  ..     ..      ..+.|+.   ..+.+.+       +.++|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            4557899999999999999999997532  1110  00     00      1122211   1122233       89999


Q ss_pred             EeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH
Q 010548           64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI  143 (507)
Q Consensus        64 ~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  143 (507)
                      |||||+.+|......+++.+|++|+|+|++++.+.....  ++..+...  ++|+++|+||+|+....    ..+....+
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~--~~~~~~~~--~ip~ilviNKiD~~~~~----~~~~~~~l  158 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET--VWRQANKY--KVPRIAFVNKMDRMGAN----FLKVVNQI  158 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEeCCCccccc----HHHHHHHH
Confidence            999999999888999999999999999999986665544  33444444  79999999999987642    33445555


Q ss_pred             HHHhcccCcEEEeCcccCCCchHHHHHHHHHHcCCCC-C---CC-----ccchhcccHHHHHHHHHHHhhccCC------
Q 010548          144 MQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTA-P---LF-----DHDEQTLKPRCVRALKRIFIICDHD------  208 (507)
Q Consensus       144 ~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~~~-~---~~-----~~~~~~~~~~~~~~l~~~~~~~d~~------  208 (507)
                      ...++.....+.+....+.++..+++.+......... .   .+     .........+++..|.+.....|++      
T Consensus       159 ~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l  238 (704)
T 2rdo_7          159 KTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYL  238 (704)
T ss_pred             HHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence            5555542212222222223332233322222211110 0   00     0000111122333444444444433      


Q ss_pred             CCCccChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCCc
Q 010548          209 MDGALNDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDGV  250 (507)
Q Consensus       209 ~d~~l~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~~  250 (507)
                      ++..++.+++....++          +|++++...+++.+++.|.+.+|+-.
T Consensus       239 ~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~  290 (704)
T 2rdo_7          239 GGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPV  290 (704)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChh
Confidence            3567889998887774          67889999999999999999999743

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.65  E-value=1.3e-16  Score=165.14  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=104.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCCC--------------------------CCCCCCeeeC---CcccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEKV--------------------------PPVHAPTRLP---PDFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~~--------------------------~~~~~~~t~~---~~~~~~~   58 (507)
                      ++.++|+++|++|+|||||+++|+..  .+....                          .....+.|+.   ..+...+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45689999999999999999999864  221100                          0001122322   2344667


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHH------hHHHHHHhcCCC-CcEEEEEecccCCCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS------YWLPELRRLEIK-VPIIVAGCKLDLRGDH  131 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~------~~~~~l~~~~~~-~piilv~NK~Dl~~~~  131 (507)
                      ..+.+|||||+++|...+..+++.+|++|+|+|+++ .+++....      .....++..  + .|+++|+||+|+.+..
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence            899999999999999888899999999999999998 56664332      122333333  4 4699999999997631


Q ss_pred             --Cc--cchhhhhHHHHHHhcc---cCcEEEeCcccCCCchHHH
Q 010548          132 --NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDVF  168 (507)
Q Consensus       132 --~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l~  168 (507)
                        +.  ....+.+..+...++.   ..+++++||++|.|+.+++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence              11  0123445555555542   1379999999999998654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.65  E-value=3.5e-16  Score=173.84  Aligned_cols=166  Identities=17%  Similarity=0.180  Sum_probs=113.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCCC----CCCCeeeC---CcccCCceEEEEEeCCCCccc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATES-------VPE--KVPP----VHAPTRLP---PDFYPDRVPVTIIDTSSSLEN   72 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~-------~~~--~~~~----~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~   72 (507)
                      .++.++|+++|++++|||||+++|++..       +..  ....    ...++|+.   ..+...+..+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4567999999999999999999998641       100  0010    11223322   224456789999999999999


Q ss_pred             hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc-
Q 010548           73 KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE-  149 (507)
Q Consensus        73 ~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~-  149 (507)
                      ......+++.+|++|+|+|++++...+...  ++..++..  ++| +|+|+||+|+.+.... ....+++..+...++. 
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            888888999999999999999875444332  55556555  788 8999999999753211 0122345555655542 


Q ss_pred             --cCcEEEeCcccC--------CCchHHHHHHHHHHcCC
Q 010548          150 --IETCVECSATTM--------IQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       150 --~~~~~~~SA~~g--------~gi~~l~~~i~~~i~~~  178 (507)
                        ..+++++||++|        .|+.++++.|.+.+..+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence              247999999999        46899999988866543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.63  E-value=1.9e-15  Score=164.07  Aligned_cols=116  Identities=20%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---------------CCeee---CCcccCCceEEEEEeCCCCc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH---------------APTRL---PPDFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~---------------~~~t~---~~~~~~~~~~~~i~Dt~G~~   70 (507)
                      ..+..+|+|+|+.|+|||||+++|++...........               .+.++   ...+....+.+++|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            4567899999999999999999999544321111100               01111   11223457889999999999


Q ss_pred             cchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548           71 ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        71 ~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~  128 (507)
                      .+......+++.+|++++|+|++++.......  ++..++..  ++|+++|+||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~--~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHHH--HHHHHHHc--cCCEEEEecCCchh
Confidence            99888899999999999999998876555443  66666665  79999999999987

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.63  E-value=4.9e-17  Score=174.03  Aligned_cols=163  Identities=18%  Similarity=0.153  Sum_probs=88.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCeeeC---CcccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK----------------------------VPPVHAPTRLP---PDFYPD   57 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----------------------------~~~~~~~~t~~---~~~~~~   57 (507)
                      ....++|+|+|++|+|||||+++|+.......                            .....+++|+.   ..+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            34568999999999999999999974210000                            00001233322   223345


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh---hH--HHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TL--SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH  131 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~---s~--~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~  131 (507)
                      +..+.||||||+..|...+..++..+|++|+|+|++++.   .+  .......+..+...  ++| +|+|+||+|+....
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~  331 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS  331 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence            678999999999999888888999999999999998642   11  10011133334444  565 99999999997632


Q ss_pred             Cccchhh---hhHHHH-HHhcc---cCcEEEeCcccCCCch--------------HHHHHHHHH
Q 010548          132 NATSLEE---VMGPIM-QQFRE---IETCVECSATTMIQVP--------------DVFYYAQKA  174 (507)
Q Consensus       132 ~~~~~~~---~~~~~~-~~~~~---~~~~~~~SA~~g~gi~--------------~l~~~i~~~  174 (507)
                      .. ....   .+..+. ..++.   ..+++++||++|.||.              .|++.|...
T Consensus       332 ~~-~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~  394 (592)
T 3mca_A          332 ED-RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL  394 (592)
T ss_dssp             HH-HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred             HH-HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence            21 1222   222222 22232   1268999999999998              677776553

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.63  E-value=3.1e-16  Score=163.22  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=103.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCC----------------C----CC------CCCCeeeC---CcccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATE--SVPEK----------------V----PP------VHAPTRLP---PDFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~--~~~~~----------------~----~~------~~~~~t~~---~~~~~~~   58 (507)
                      ++.++|+++|++|+|||||+++|++.  .+...                .    ..      ...+.|+.   ..+...+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45799999999999999999999864  11100                0    00      00122221   1234567


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhh---HH---HHHHhHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQST---LS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH  131 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~  131 (507)
                      ..+.+|||||+++|......++..+|++|+|+|++++..   |+   ...+ ++..++..  ++| +|+|+||+|+.+..
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~~--~v~~iivviNK~Dl~~~~  161 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAVNKMDSVKWD  161 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEEECGGGGTTC
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHHc--CCCeEEEEEEccccccCC
Confidence            889999999999998888899999999999999998632   21   2222 33334444  565 99999999997421


Q ss_pred             Cc--cchhhhhHHHHHHhcc---cCcEEEeCcccCCCchHH
Q 010548          132 NA--TSLEEVMGPIMQQFRE---IETCVECSATTMIQVPDV  167 (507)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~l  167 (507)
                      ..  ......+..+...++.   ..+++++||++|.|+.++
T Consensus       162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11  0122334455555542   137999999999999764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.62  E-value=1.3e-15  Score=165.98  Aligned_cols=162  Identities=15%  Similarity=0.129  Sum_probs=107.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCee--------eCCccc------------------CCc----
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTR--------LPPDFY------------------PDR----   58 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t--------~~~~~~------------------~~~----   58 (507)
                      ..++|+|+|.+|||||||+|+|++..+...  .+++...+.        ....+.                  ..+    
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999998875332  222210000        000000                  000    


Q ss_pred             --------------------------eEEEEEeCCCCccc---hhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHH
Q 010548           59 --------------------------VPVTIIDTSSSLEN---KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPEL  109 (507)
Q Consensus        59 --------------------------~~~~i~Dt~G~~~~---~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l  109 (507)
                                                ..+.+|||||....   ......+++.+|++|+|+|++++.+..+... |...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHH
Confidence                                      46899999997653   3445578899999999999999888777653 55555


Q ss_pred             HhcCCCCcEEEEEecccCCCCCCccchh---h------hhHH-----HHHHhc------ccCcEEEeCcc----------
Q 010548          110 RRLEIKVPIIVAGCKLDLRGDHNATSLE---E------VMGP-----IMQQFR------EIETCVECSAT----------  159 (507)
Q Consensus       110 ~~~~~~~piilv~NK~Dl~~~~~~~~~~---~------~~~~-----~~~~~~------~~~~~~~~SA~----------  159 (507)
                      ...  ++|+++|+||+|+...... ..+   .      ....     +....+      ...++++|||+          
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~-~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLI-DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCS-STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hhh--CCCEEEEEECccccccccc-ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            544  6899999999998654211 000   0      0111     111111      11268999999          


Q ss_pred             ----cCCCchHHHHHHHHHHc
Q 010548          160 ----TMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       160 ----~g~gi~~l~~~i~~~i~  176 (507)
                          ++.|++++++.|.+.+.
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHH
Confidence                99999999999988764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.62  E-value=3.6e-15  Score=157.29  Aligned_cols=117  Identities=12%  Similarity=0.090  Sum_probs=83.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCC--------CCCeeeC---CcccCCceEEEEEeCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKV-----------PPV--------HAPTRLP---PDFYPDRVPVTIIDTS   67 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-----------~~~--------~~~~t~~---~~~~~~~~~~~i~Dt~   67 (507)
                      .+.++|+|+|++|+|||||+++|+........           .+.        ..+.++.   ..+...++.+++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            35689999999999999999999964211100           000        1112211   1234567899999999


Q ss_pred             CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      |+..+......+++.+|++|+|+|++++......  .++..++..  ++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~~--~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRLR--DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHHc--CCCEEEEEcCcCCccc
Confidence            9999988888999999999999999987543332  244445444  7999999999999764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.60  E-value=2.1e-15  Score=149.41  Aligned_cols=160  Identities=15%  Similarity=0.133  Sum_probs=98.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCC---CeeeCC-------------------------------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHA---PTRLPP-------------------------------   52 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~---~~t~~~-------------------------------   52 (507)
                      ....+|+|+|++|||||||+|+|++..+...   ..+..+   .++...                               
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4567999999999999999999999876222   112222   111100                               


Q ss_pred             -------------c----------ccCCceEEEEEeCCCCcc-------------chhhhHHhhccCCEEEEEEeCCChh
Q 010548           53 -------------D----------FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRADAVVLTYACNQQS   96 (507)
Q Consensus        53 -------------~----------~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~il~V~D~~~~~   96 (507)
                                   .          .......+.+|||||...             +......+++.+|++++|+|.++..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                         0          112346799999999754             3345557899999999999974332


Q ss_pred             -hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-CcEEE---eCccc---CCCchHHH
Q 010548           97 -TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVE---CSATT---MIQVPDVF  168 (507)
Q Consensus        97 -s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~SA~~---g~gi~~l~  168 (507)
                       +..... .+...+...  ++|+++|+||+|+......  ..+   .+....... ..+++   +||.+   +.|+.+++
T Consensus       182 ~~~~~~~-~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~--~~~---~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~  253 (315)
T 1jwy_B          182 LANSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKGTD--AME---VLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL  253 (315)
T ss_dssp             STTCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSSCC--CHH---HHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred             hhhhHHH-HHHHHhCCC--CCcEEEEEcCcccCCcchH--HHH---HHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence             111111 245555444  7999999999999765331  111   111111110 13444   55556   78999999


Q ss_pred             HHHHHHHcC
Q 010548          169 YYAQKAVLH  177 (507)
Q Consensus       169 ~~i~~~i~~  177 (507)
                      +.+.+.+..
T Consensus       254 ~~~~~~~~~  262 (315)
T 1jwy_B          254 KSEILYFKN  262 (315)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            998887754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.59  E-value=4.1e-15  Score=143.51  Aligned_cols=120  Identities=15%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhc------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE--KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELK------   81 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------   81 (507)
                      ++.++|+++|.+|||||||+|+|++..+..  ..++..... ....+...+..+.+|||||+.++......+++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP-VMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCC-EEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceee-EEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            467999999999999999999999987422  122211111 12233456779999999999877655544443      


Q ss_pred             ---cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC---CCcEEEEEecccCCCCC
Q 010548           82 ---RADAVVLTYACNQQSTLSRLSSYWLPELRRLEI---KVPIIVAGCKLDLRGDH  131 (507)
Q Consensus        82 ---~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~  131 (507)
                         .+|++++|+|++... +......|+..++....   ..|+++|+||+|+...+
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~  167 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD  167 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence               889999999987654 44333347777766422   25999999999996543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.59  E-value=7.9e-16  Score=160.54  Aligned_cols=156  Identities=15%  Similarity=0.110  Sum_probs=90.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC--CCC--------------------CCCC------CCCCeeeCC---cccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATES--VPE--------------------KVPP------VHAPTRLPP---DFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~--~~~--------------------~~~~------~~~~~t~~~---~~~~~~   58 (507)
                      .+.++|+++|+.++|||||+++|+...  +..                    +...      ...+.|+..   .+...+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            346899999999999999999997522  110                    0000      012233222   233457


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChh---hHH---HHHHhHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQS---TLS---RLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH  131 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~---s~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~  131 (507)
                      ..+.+|||||++.|...+...+..+|++|+|+|++++.   +|+   ...+ .+..+...  ++| +|+|+||+|+....
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e-~l~~~~~~--~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHH-HHHHHHHc--CCCEEEEEEECccCCCcc
Confidence            88999999999999888888999999999999999863   222   1111 22223333  677 99999999996422


Q ss_pred             C--c--cchhhhhHHHHHHh-cc----cCcEEEeCcccCCCchHHH
Q 010548          132 N--A--TSLEEVMGPIMQQF-RE----IETCVECSATTMIQVPDVF  168 (507)
Q Consensus       132 ~--~--~~~~~~~~~~~~~~-~~----~~~~~~~SA~~g~gi~~l~  168 (507)
                      .  .  ......+..+...+ +.    ..+++++||++|.|+.+++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1  0  01122344444444 21    1369999999999998866

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.59  E-value=2.2e-16  Score=159.22  Aligned_cols=159  Identities=17%  Similarity=0.177  Sum_probs=80.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCC-----CCCCee-----eCCcccCCceEEEEEeCCCC-------ccch
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVP-EKVPP-----VHAPTR-----LPPDFYPDRVPVTIIDTSSS-------LENK   73 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~-----~~~~~t-----~~~~~~~~~~~~~i~Dt~G~-------~~~~   73 (507)
                      .++|+|+|++|||||||+|+|.+.... ....+     ..++.+     ...........+.+|||||+       +.+.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            589999999999999999998765432 21110     001111     11111222458999999998       5555


Q ss_pred             hhhH-------HhhccCCEE-----------EEEEeCCC-hhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc
Q 010548           74 GKLN-------EELKRADAV-----------VLTYACNQ-QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT  134 (507)
Q Consensus        74 ~~~~-------~~~~~ad~i-----------l~V~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~  134 (507)
                      .+..       .+++.++++           ++||++++ ..++..+...|+..+   ..++|+|+|+||+|+...+.+.
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~  193 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE  193 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence            5554       555544332           24444443 445555554455554   3479999999999997644330


Q ss_pred             chhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ...+.+..++..++.  +++++||++|.| ++.|..+.+.+.
T Consensus       194 ~~k~~i~~~~~~~~i--~~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          194 RLKKRILDEIEEHNI--KIYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             HHHHHHHHHTTCC-C--CSCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC--CEEeCCCcCCCc-chhHHHHHHHHH
Confidence            111233444444442  689999999998 777777776664

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.56  E-value=1e-14  Score=141.29  Aligned_cols=120  Identities=17%  Similarity=0.106  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhH-------Hh-
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLN-------EE-   79 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~-   79 (507)
                      .+.++|+++|.+|||||||+|+|++..+...  .++.... .....+...+..+.+|||||+.++.....       .+ 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee-eEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            3578999999999999999999998875321  2211111 11223345678899999999876543222       12 


Q ss_pred             -hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC-CC--CcEEEEEecccCCCCC
Q 010548           80 -LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IK--VPIIVAGCKLDLRGDH  131 (507)
Q Consensus        80 -~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~-~~--~piilv~NK~Dl~~~~  131 (507)
                       .+.+|++|+|+|++.. ++......|+..+.... .+  +|+++|+||+|+....
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence             3479999999998653 34444334777776542 22  6999999999987644

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.56  E-value=3.9e-15  Score=149.99  Aligned_cols=157  Identities=15%  Similarity=0.129  Sum_probs=95.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------------------eeeC--------------
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAP----------------------TRLP--------------   51 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~----------------------~t~~--------------   51 (507)
                      ...+|+|+|++|||||||+|+|++..+.+.   ..+..+.                      ++..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999999886422   2222222                      1100              


Q ss_pred             ---Cc----------ccCCceEEEEEeCCCCcc-------------chhhhHHhhccCC-EEEEEEeCCChhhHHHHHHh
Q 010548           52 ---PD----------FYPDRVPVTIIDTSSSLE-------------NKGKLNEELKRAD-AVVLTYACNQQSTLSRLSSY  104 (507)
Q Consensus        52 ---~~----------~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad-~il~V~D~~~~~s~~~~~~~  104 (507)
                         ..          .......+.+|||||...             +..+...+++.++ ++++|+|++....-..... 
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~-  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK-  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH-
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH-
Confidence               00          011246799999999742             2335556776665 5555666654322222211 


Q ss_pred             HHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH--HHHHHhcccCcEEEeCcccCCCchHHHHHHHH
Q 010548          105 WLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQFREIETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       105 ~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                      ++..+...  +.|+++|+||+|+.+....  ......  .+....+. .+++++||++|.|++++++.+.+
T Consensus       189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~-~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDPQ--GQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGY-IGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCTT--CTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCE-EECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCcC--CCceEEEeccccccCcchh--HHHHHhCCcccccCCc-eEEEeCCcccccccccHHHHHHH
Confidence            44444433  7999999999999765331  111111  00001111 25688999999999999999876

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.56  E-value=1.1e-14  Score=141.63  Aligned_cols=98  Identities=11%  Similarity=0.051  Sum_probs=64.3

Q ss_pred             EEeCCCCc-cchhhhHHhhccCCEEEEEEeCCChhhHHH--HHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhh
Q 010548           63 IIDTSSSL-ENKGKLNEELKRADAVVLTYACNQQSTLSR--LSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV  139 (507)
Q Consensus        63 i~Dt~G~~-~~~~~~~~~~~~ad~il~V~D~~~~~s~~~--~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~  139 (507)
                      |-..||+. .....+...++.+|+++.|+|++++.+..+  +.. |+       .++|+++|+||+|+.+..    ..+.
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~-~l-------~~kp~ilVlNK~DL~~~~----~~~~   70 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED-IL-------KNKPRIMLLNKADKADAA----VTQQ   70 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHH-HC-------SSSCEEEEEECGGGSCHH----HHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHH-HH-------CCCCEEEEEECcccCCHH----HHHH
Confidence            34567765 344566788999999999999999877643  222 22       479999999999997521    1111


Q ss_pred             hHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          140 MGPIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       140 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      ...+.+..+  .+++.+||+++.|++++++.+.+.
T Consensus        71 ~~~~~~~~g--~~~i~iSA~~~~gi~~L~~~i~~~  103 (282)
T 1puj_A           71 WKEHFENQG--IRSLSINSVNGQGLNQIVPASKEI  103 (282)
T ss_dssp             HHHHHHTTT--CCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             HHHHHHhcC--CcEEEEECCCcccHHHHHHHHHHH
Confidence            122222222  268999999999999999877553

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.54  E-value=1.9e-14  Score=142.48  Aligned_cols=119  Identities=15%  Similarity=0.129  Sum_probs=92.3

Q ss_pred             CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEe
Q 010548           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGC  123 (507)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~N  123 (507)
                      .+++++.+|||+|++.++..+..++++++++|||||++          +..++.+... |+..+...  ..++|++|++|
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEE
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEE
Confidence            35678999999999999999999999999999999998          6788888776 55555442  35799999999


Q ss_pred             cccCCCCC---------------CccchhhhhHHHHHHh------c------------------ccCcEEEeCcccCCCc
Q 010548          124 KLDLRGDH---------------NATSLEEVMGPIMQQF------R------------------EIETCVECSATTMIQV  164 (507)
Q Consensus       124 K~Dl~~~~---------------~~~~~~~~~~~~~~~~------~------------------~~~~~~~~SA~~g~gi  164 (507)
                      |+|+..++               .. ..++....+..++      .                  ....++++||++..||
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv  315 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNI  315 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHH
Confidence            99986421               01 2344455555666      0                  1125789999999999


Q ss_pred             hHHHHHHHHHHc
Q 010548          165 PDVFYYAQKAVL  176 (507)
Q Consensus       165 ~~l~~~i~~~i~  176 (507)
                      ..+|..+.+.++
T Consensus       316 ~~vF~~v~~~Il  327 (340)
T 4fid_A          316 KRVFMLAVDVIM  327 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.54  E-value=2.3e-14  Score=141.30  Aligned_cols=119  Identities=13%  Similarity=0.149  Sum_probs=89.5

Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEec
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK  124 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK  124 (507)
                      +++++++|||+|++.++..+..++++++++|+|||++          +..++.+... |+..+...  ..+.|++|++||
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEEC
Confidence            4678999999999999999999999999999999665          6677777665 65555442  257999999999


Q ss_pred             ccCCCCC----------------CccchhhhhHHHHHHhcc-------cCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          125 LDLRGDH----------------NATSLEEVMGPIMQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       125 ~Dl~~~~----------------~~~~~~~~~~~~~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      +|+..++                .. ..++....+..+|..       ...++++||+++.||.++|..+.+.++.
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~-~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQR-DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSS-CHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccchHhhhchhccCCCC-CHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence            9986532                12 333333344333321       1246899999999999999999988764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.54  E-value=9.7e-15  Score=147.52  Aligned_cols=153  Identities=14%  Similarity=0.179  Sum_probs=97.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC--Ce--------------e-eC----------------------
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PT--------------R-LP----------------------   51 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~--~~--------------t-~~----------------------   51 (507)
                      ...+|+|+|++|||||||+|+|++..+.+.......  .+              . ..                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            345999999999999999999999876333211110  00              0 00                      


Q ss_pred             ------Cc----------ccCCceEEEEEeCCCCccc-------------hhhhHHhhccCCEEEEEEeCCChhhHHHHH
Q 010548           52 ------PD----------FYPDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTYACNQQSTLSRLS  102 (507)
Q Consensus        52 ------~~----------~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~il~V~D~~~~~s~~~~~  102 (507)
                            ..          .......+.+|||||+..+             ......+++.+|++|+|+|..+......  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                  00          0122456899999998765             4556688999999999998765432221  


Q ss_pred             HhHHHHHHhcC-CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548          103 SYWLPELRRLE-IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus       103 ~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                       .|...++... .+.|+|+|+||+|+...... . .+........++  .+|+++|++++.++++.+..
T Consensus       191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~-~~~~~~~~~~~~--~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTD-A-VEILEGRSFKLK--YPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC-S-HHHHTTSSSCCS--SCCEEECCCCHHHHHTTCCH
T ss_pred             -HHHHHHHHhcccCCCEEEEEeCCccCCCccc-H-HHHHcCcccccc--CCeEEEEECChHHhccCCCH
Confidence             1444444433 26899999999999865433 1 121222222222  26899999999988776544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.52  E-value=5.2e-14  Score=130.10  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=77.9

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ..+.+||+++|++|||||||+++|+++.+...+.++.+.++..+.+..++...++.+|||+|++++..+.  ..+++.+|
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d  100 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT--QSYYRSAN  100 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--GGGSTTCS
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH--HHHHhcCC
Confidence            3567999999999999999999999999988888899988888888888777899999999999999887  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus       101 ~~i~v~D~  108 (201)
T 2ew1_A          101 ALILTYDI  108 (201)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999995

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.52  E-value=5e-14  Score=131.50  Aligned_cols=85  Identities=16%  Similarity=0.274  Sum_probs=72.6

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+...+....+.+|||+|++++..++  ..+++++|
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d  100 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVR--PLCYSDSD  100 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTG--GGGCTTCS
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHH--HHHcCCCe
Confidence            34569999999999999999999999999988888888776 4556777778899999999999999888  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus       101 ~~i~v~d~  108 (214)
T 3q3j_B          101 AVLLCFDI  108 (214)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.52  E-value=3.1e-14  Score=131.53  Aligned_cols=88  Identities=23%  Similarity=0.387  Sum_probs=68.9

Q ss_pred             cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      +.....+||+++|++|||||||+++|+++.+...+.+|.+.++....+..++...++.+|||+|++++..++  ..+++.
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~  101 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT--QSYYRS  101 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHH--HHHHTT
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHHhh
Confidence            344567999999999999999999999999988888888888877778887667899999999999999887  789999


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      +|++++|||+
T Consensus       102 ~d~iilv~D~  111 (201)
T 2hup_A          102 ANGAILAYDI  111 (201)
T ss_dssp             CSEEEEEEET
T ss_pred             CCEEEEEEEC
Confidence            9999999995

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.51  E-value=5.5e-14  Score=128.61  Aligned_cols=88  Identities=23%  Similarity=0.317  Sum_probs=78.5

Q ss_pred             cccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       418 ~~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      +...+.+||+++|++|||||||+++|++..+...+.++.+..+....+...+...++.+|||+|++++..++  ..+++.
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~   97 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT--SAYYRG   97 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH--HHHHTT
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh--HHHhcc
Confidence            344567999999999999999999999999998888898888877777777778899999999999998877  688999


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      +|++++|||+
T Consensus        98 ~d~vi~v~D~  107 (193)
T 2oil_A           98 AVGALLVFDL  107 (193)
T ss_dssp             CCEEEEEEET
T ss_pred             CCEEEEEEEC
Confidence            9999999995

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.51  E-value=1.3e-13  Score=140.77  Aligned_cols=158  Identities=20%  Similarity=0.194  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCCCCeeeCCcccCC-ceEEEEEeCCCCccc----hhhh---HHhhccC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVHAPTRLPPDFYPD-RVPVTIIDTSSSLEN----KGKL---NEELKRA   83 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~~----~~~~---~~~~~~a   83 (507)
                      -.|+|+|++|||||||+++|++..... .++.+.-..+.. .+... ...+.+|||||..+.    ..+.   ...++.+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            458999999999999999999875311 111110000111 11222 367999999997532    1122   2345679


Q ss_pred             CEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      +.+++|+|++ ...+.++.. |..++....   .+.|.++|+||+|+... .   ....+.......+  .+++.+||++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~-~---~~~~l~~~l~~~g--~~vi~iSA~~  308 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE-E---AVKALADALAREG--LAVLPVSALT  308 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH-H---HHHHHHHHHHTTT--SCEEECCTTT
T ss_pred             HhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH-H---HHHHHHHHHHhcC--CeEEEEECCC
Confidence            9999999998 556666654 666655542   25899999999998753 1   1122222222222  2689999999


Q ss_pred             CCCchHHHHHHHHHHcCCC
Q 010548          161 MIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~~~  179 (507)
                      +.|++++++.|.+.+....
T Consensus       309 g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          309 GAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             CTTHHHHHHHHHHHHHTSC
T ss_pred             ccCHHHHHHHHHHHHHhcc
Confidence            9999999999999886543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.51  E-value=1.1e-13  Score=136.05  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=78.9

Q ss_pred             CceEEEEEe-CCC-----CccchhhhHHhhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548           57 DRVPVTIID-TSS-----SLENKGKLNEELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        57 ~~~~~~i~D-t~G-----~~~~~~~~~~~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~  129 (507)
                      +.+.+.++| +.|     ++++..+.+.+++++|++++|+|++++. ++..+.. |+..+...  ++|+++|+||+|+.+
T Consensus        48 D~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~~--~~~~ilV~NK~DL~~  124 (302)
T 2yv5_A           48 DYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEYF--KVEPVIVFNKIDLLN  124 (302)
T ss_dssp             CEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHHT--TCEEEEEECCGGGCC
T ss_pred             eEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHhC--CCCEEEEEEcccCCC
Confidence            345566665 333     4567777788999999999999999986 8887775 88877775  899999999999975


Q ss_pred             CCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548          130 DHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      ...+ ...+....+....+.  +++++||++|.|++++++.
T Consensus       125 ~~~v-~~~~~~~~~~~~~g~--~~~~~SA~~g~gi~~L~~~  162 (302)
T 2yv5_A          125 EEEK-KELERWISIYRDAGY--DVLKVSAKTGEGIDELVDY  162 (302)
T ss_dssp             HHHH-HHHHHHHHHHHHTTC--EEEECCTTTCTTHHHHHHH
T ss_pred             cccc-HHHHHHHHHHHHCCC--eEEEEECCCCCCHHHHHhh
Confidence            4221 112233334444442  6899999999999998865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.51  E-value=6.4e-14  Score=126.26  Aligned_cols=86  Identities=28%  Similarity=0.442  Sum_probs=75.1

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ..+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+|
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d   83 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT--STYYRGTH   83 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC--GGGGTTCS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH--HHHhccCC
Confidence            3467999999999999999999999999988888999988888888888777899999999999998887  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        84 ~~i~v~d~   91 (181)
T 3tw8_B           84 GVIVVYDV   91 (181)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.50  E-value=6.7e-14  Score=148.27  Aligned_cols=116  Identities=11%  Similarity=0.078  Sum_probs=85.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC-----------------CCCCC--CCCCeeeC---CcccCCceEEEEEeCCC
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVP-----------------EKVPP--VHAPTRLP---PDFYPDRVPVTIIDTSS   68 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~-----------------~~~~~--~~~~~t~~---~~~~~~~~~~~i~Dt~G   68 (507)
                      +..+|+|+|+.++|||||..+|+...-.                 .....  ...++|+.   ..+.++++.++|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            4568999999999999999999732210                 00000  11122322   23457889999999999


Q ss_pred             CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      +.+|.......++-+|++|+|+|+..+-..+...  .+....+.  ++|+|+++||+|....
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~--v~~~a~~~--~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK--LMDVCRMR--ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHH--HHHHHHHh--CCceEEEEecccchhc
Confidence            9999999999999999999999999986665544  44666666  8999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.50  E-value=8.6e-14  Score=123.93  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=76.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++.+...+.++.+..+....+...+...++.+|||+|++++..++  ..+++.+|++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~~   82 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA--PMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhh--HHhccCCCEE
Confidence            46899999999999999999999999988888888888877778888778899999999999998877  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        83 i~v~d~   88 (170)
T 1r2q_A           83 IVVYDI   88 (170)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.50  E-value=6.4e-14  Score=128.08  Aligned_cols=87  Identities=23%  Similarity=0.390  Sum_probs=73.7

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      ...+.+||+++|++|||||||+++|+++++...+.++.+.++....+..++...++.+|||+|++++..++  ..+++.+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~   94 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT--RSYYRGA   94 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC--HHHHTTC
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH--HHHhccC
Confidence            34567999999999999999999999999988888888888888888888777899999999999998877  7899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        95 d~ii~v~d~  103 (191)
T 2a5j_A           95 AGALLVYDI  103 (191)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999996

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.50  E-value=1.4e-13  Score=139.09  Aligned_cols=100  Identities=18%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             CCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHH
Q 010548           68 SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQ  146 (507)
Q Consensus        68 G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~  146 (507)
                      .++.|......+++.++++++|+|++++.+      .|.+.+.+...++|+++|+||+|+...... ....+........
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~  130 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE  130 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence            367788888888999999999999999763      265556655558999999999999764321 0011112222334


Q ss_pred             hccc-CcEEEeCcccCCCchHHHHHHHH
Q 010548          147 FREI-ETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       147 ~~~~-~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                      .+.. ..++.+||++|.|++++++.+.+
T Consensus       131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A          131 LGLCPVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             TTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence            4421 25899999999999999887643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.50  E-value=9.2e-14  Score=126.06  Aligned_cols=85  Identities=24%  Similarity=0.454  Sum_probs=77.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+|+
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   85 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT--RSYYRGAAG   85 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTSTTCSE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHHhcCCE
Confidence            457999999999999999999999999988888898888888888888677799999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        86 ~i~v~d~   92 (186)
T 2bme_A           86 ALLVYDI   92 (186)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.50  E-value=9e-14  Score=126.79  Aligned_cols=87  Identities=21%  Similarity=0.344  Sum_probs=77.6

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      ..+..+||+++|++|||||||+++|+++.+...+.++.+.++....+...+...++.+|||+|++++..++  ..+++.+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~   95 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT--TAYYRGA   95 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG--GGGGTTC
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH--HHhccCC
Confidence            34567999999999999999999999999988888888888877777777778899999999999998877  6899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        96 d~ii~v~d~  104 (189)
T 2gf9_A           96 MGFLLMYDI  104 (189)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999995

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.49  E-value=1e-13  Score=123.61  Aligned_cols=85  Identities=20%  Similarity=0.317  Sum_probs=70.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|++++..++  ..+++.+|+
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~   81 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG--PIYYRDSNG   81 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH--HHHhccCCE
Confidence            356999999999999999999999999988888888888887888888788899999999999998877  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        82 ~i~v~d~   88 (170)
T 1z08_A           82 AILVYDI   88 (170)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.49  E-value=1.2e-13  Score=123.07  Aligned_cols=83  Identities=23%  Similarity=0.360  Sum_probs=75.1

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+....+..++...++.+|||+|++++...+  ..+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~d~~i   80 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA--PXYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh--hhhhccCcEEE
Confidence            5899999999999999999999999988888888888877777787777899999999999998877  68899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        81 ~v~d~   85 (170)
T 1ek0_A           81 VVYDV   85 (170)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            99996

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.49  E-value=1.3e-13  Score=127.09  Aligned_cols=85  Identities=20%  Similarity=0.339  Sum_probs=77.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|++..+...+.++.+.++....+...+...++.+|||+|.+++..++  ..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   83 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT--TAYYRGAMG   83 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTGGGCSE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchH--HHhhcCCCE
Confidence            457999999999999999999999999988888888888887778877778899999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        84 ii~v~d~   90 (203)
T 1zbd_A           84 FILMYDI   90 (203)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.49  E-value=1e-13  Score=123.27  Aligned_cols=84  Identities=14%  Similarity=0.341  Sum_probs=76.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++...++.+|||+|++++..+.  ..+++.+|++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~   81 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQAC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC--HHHHTTCCEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH--HHHhcCCCEE
Confidence            46899999999999999999999999988888898888888888887677899999999999988877  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        82 i~v~d~   87 (168)
T 1z2a_A           82 VLVFST   87 (168)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.49  E-value=6.9e-14  Score=128.08  Aligned_cols=87  Identities=22%  Similarity=0.393  Sum_probs=70.9

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      .....+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~   99 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT--SAYYRSA   99 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HHHHHHC
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH--HHHhcCC
Confidence            34567999999999999999999999999988888898888888888888677899999999999998887  6899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus       100 d~iilV~D~  108 (192)
T 2il1_A          100 KGIILVYDI  108 (192)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999995

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.49  E-value=2.5e-14  Score=145.59  Aligned_cols=83  Identities=23%  Similarity=0.325  Sum_probs=46.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCCC--CCeee-CC-------------------cccC-CceEEEEEeCCC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVP-EKVPPVH--APTRL-PP-------------------DFYP-DRVPVTIIDTSS   68 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~-~~~~~~~--~~~t~-~~-------------------~~~~-~~~~~~i~Dt~G   68 (507)
                      +||+|+|.||||||||+|+|++.... .+++.+.  +.... ..                   .+.. ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987621 1222111  11111 00                   0011 136899999999


Q ss_pred             Cccc----hhhhH---HhhccCCEEEEEEeCCCh
Q 010548           69 SLEN----KGKLN---EELKRADAVVLTYACNQQ   95 (507)
Q Consensus        69 ~~~~----~~~~~---~~~~~ad~il~V~D~~~~   95 (507)
                      +...    ..+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8542    22222   457999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.49  E-value=8e-14  Score=124.22  Aligned_cols=84  Identities=29%  Similarity=0.449  Sum_probs=70.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+|++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~   79 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT--TAYYRGAMGI   79 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC--HHHHTTEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH--HHHhccCCEE
Confidence            45899999999999999999999999988888888888888888888778899999999999998877  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~d~   85 (170)
T 1g16_A           80 ILVYDI   85 (170)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.49  E-value=1.1e-13  Score=126.25  Aligned_cols=85  Identities=22%  Similarity=0.434  Sum_probs=76.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh-hhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-KILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~ad  499 (507)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++...++.+|||+|++++. .++  ..+++.+|
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~d   95 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMV--QHYYRNVH   95 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTH--HHHHTTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhh--HHHhcCCC
Confidence            456999999999999999999999999988888999888888888888677899999999999988 666  67899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        96 ~iilv~D~  103 (189)
T 1z06_A           96 AVVFVYDM  103 (189)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999995

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.49  E-value=1.4e-13  Score=124.18  Aligned_cols=85  Identities=21%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|++.++...+.++.+..+....+...+...++.+|||+|++++..++  ..+++.+|+
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~   87 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA--PMYYRGAAA   87 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT--HHHHTTCSE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh--HHHhccCCE
Confidence            456999999999999999999999999988888888888888778887777899999999999998887  688999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        88 ~i~v~d~   94 (181)
T 2efe_B           88 AIIVFDV   94 (181)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.48  E-value=3.2e-13  Score=136.37  Aligned_cols=99  Identities=19%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             CccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHh
Q 010548           69 SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQF  147 (507)
Q Consensus        69 ~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~  147 (507)
                      .+.|...++.+.+.+|++++|+|++++.      ..|.+.+++...++|+++|+||+|+...... ....+.........
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            4678888888999999999999999863      2377777776568999999999999754321 00111122233444


Q ss_pred             cc-cCcEEEeCcccCCCchHHHHHHHH
Q 010548          148 RE-IETCVECSATTMIQVPDVFYYAQK  173 (507)
Q Consensus       148 ~~-~~~~~~~SA~~g~gi~~l~~~i~~  173 (507)
                      +. ..+++.+||++|.|++++++.|.+
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l~~  156 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAIEY  156 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence            42 125899999999999999987643

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.48  E-value=1.2e-13  Score=127.66  Aligned_cols=85  Identities=27%  Similarity=0.452  Sum_probs=77.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   83 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT--SSYYRGSHG   83 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC--GGGGTTCSE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHhccCCCE
Confidence            456999999999999999999999999998888999988888888888777899999999999998887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        84 vilv~d~   90 (206)
T 2bcg_Y           84 IIIVYDV   90 (206)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.48  E-value=1.7e-14  Score=141.75  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC-CCCCCC-C-------CCCC--CeeeCCcccCCceEEEEEeCCCC-------ccch
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATE-SVPEKV-P-------PVHA--PTRLPPDFYPDRVPVTIIDTSSS-------LENK   73 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~-~~~~~~-~-------~~~~--~~t~~~~~~~~~~~~~i~Dt~G~-------~~~~   73 (507)
                      .++|+|+|++|||||||+++|.+. .+.... +       +...  ..............+.+|||+|+       +.+.
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~   97 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK   97 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence            589999999999999999999875 332221 0       1000  00011111233568999999998       4444


Q ss_pred             hhhH-------Hhhcc-------------CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548           74 GKLN-------EELKR-------------ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (507)
Q Consensus        74 ~~~~-------~~~~~-------------ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~  133 (507)
                      ....       .+++.             +++++++.+.+.. +++.....++..+   ..+.|+++|+||+|+...++.
T Consensus        98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~  173 (301)
T 2qnr_A           98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER  173 (301)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHH
Confidence            4443       34333             3445666554331 2333322233333   346899999999999764332


Q ss_pred             cchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                      ....+.+..++..++.  +++++||++| |++++|..+.+.+...
T Consensus       174 ~~~~~~~~~~~~~~~~--~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          174 ERLKKRILDEIEEHNI--KIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHTTC--CCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCC--eEEecCCccc-cccHHHHHHHHHhhcC
Confidence            1123455566666653  7899999999 9999999999887543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=125.91  Aligned_cols=85  Identities=27%  Similarity=0.455  Sum_probs=77.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+|+
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~   91 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAHG   91 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH--HHHHTTCSE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH--HHHHhhCCE
Confidence            467999999999999999999999999998888999988888888888777899999999999998887  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        92 ~i~v~d~   98 (196)
T 3tkl_A           92 IIVVYDV   98 (196)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.48  E-value=1.5e-13  Score=123.56  Aligned_cols=85  Identities=18%  Similarity=0.350  Sum_probs=72.8

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+....+..++....+.+|||+|++++..++  ..+++.+|+
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~   82 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR--TPFYRGSDC   82 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH--GGGGTTCSE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhH--HHHHhcCCE
Confidence            356899999999999999999999999988888888888877778888777899999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        83 ~i~v~d~   89 (177)
T 1wms_A           83 CLLTFSV   89 (177)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.48  E-value=1.7e-13  Score=124.38  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=73.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|+++|..++  ..+++++|+
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~   81 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA   81 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhH--HhhcCCCcE
Confidence            45699999999999999999999999998888888876663 456677778899999999999998887  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        82 ~i~v~d~   88 (184)
T 1m7b_A           82 VLICFDI   88 (184)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.48  E-value=1.8e-13  Score=121.96  Aligned_cols=84  Identities=25%  Similarity=0.385  Sum_probs=75.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++.+...+.++.+..+....+...+...++.+|||+|.+++..+.  ..+++.+|++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~~~~   82 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA--PMYYRGSAAA   82 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT--HHHHTTCSEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc--HhhCcCCCEE
Confidence            45899999999999999999999999888888888888877777787777899999999999998877  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        83 i~v~d~   88 (170)
T 1z0j_A           83 IIVYDI   88 (170)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.48  E-value=3.4e-13  Score=149.91  Aligned_cols=116  Identities=10%  Similarity=0.075  Sum_probs=84.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CC-----CCCCCeeeCC-----c--------------ccCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK--------VP-----PVHAPTRLPP-----D--------------FYPD   57 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--------~~-----~~~~~~t~~~-----~--------------~~~~   57 (507)
                      .+..+|+|+|++|+|||||+++|+.......        ..     ....+.|+..     .              .+..
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            3467999999999999999999986421000        00     0011112111     1              1233


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~  129 (507)
                      ++.++||||||+.+|...+..+++.+|++|+|+|++++.+++.... |.. +...  ++|+++|+||+|+..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~-~~~~--~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQ-ALGE--RIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHH-HHHT--TCEEEEEEECHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HHHc--CCCeEEEEECCCcch
Confidence            7899999999999999999999999999999999999988887653 443 3333  799999999999863

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.47  E-value=1.6e-13  Score=123.34  Aligned_cols=86  Identities=22%  Similarity=0.437  Sum_probs=76.9

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ..+.+||+++|++|||||||+++|+++.+...+.++.+.++....+...+....+.+|||+|++++..++  ..+++.+|
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d   89 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAA   89 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHH--HHHHHTCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhH--HHHhccCC
Confidence            3457999999999999999999999999988888888888877777787777899999999999998877  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        90 ~~i~v~d~   97 (179)
T 1z0f_A           90 GALMVYDI   97 (179)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEeC
Confidence            99999996

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.47  E-value=2e-13  Score=124.89  Aligned_cols=85  Identities=22%  Similarity=0.364  Sum_probs=76.8

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+..+....+...+...++.+|||+|++++..++  ..+++.+|+
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~   98 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA--PMYYRGSAA   98 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT--HHHHTTCSE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh--HHhhccCCE
Confidence            456999999999999999999999999887888888888877778888788899999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        99 iilV~d~  105 (192)
T 2fg5_A           99 AVIVYDI  105 (192)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            9999995

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.47  E-value=1.7e-13  Score=123.15  Aligned_cols=84  Identities=19%  Similarity=0.417  Sum_probs=76.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++...+  ..+++.+|++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~~   90 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--PSYIRDSTVA   90 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS--HHHHHTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH--HHHhcCCCEE
Confidence            45999999999999999999999999988888888888888888888777899999999999999887  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        91 i~v~d~   96 (179)
T 2y8e_A           91 VVVYDI   96 (179)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999996

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.47  E-value=7.8e-14  Score=128.65  Aligned_cols=86  Identities=26%  Similarity=0.449  Sum_probs=66.8

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      .++.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+|
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d   99 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT--RSYYRGAA   99 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC--HHHHTTCS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH--HHHhccCC
Confidence            4567999999999999999999999999988888888888888888888777899999999999998877  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus       100 ~~i~v~d~  107 (200)
T 2o52_A          100 GALLVYDI  107 (200)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999995

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.47  E-value=2e-13  Score=126.19  Aligned_cols=85  Identities=19%  Similarity=0.387  Sum_probs=76.8

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|++..+...+.++.+.++....+...+....+.+|||+|++++..++  ..+++.+|+
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   83 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG--VAFYRGADC   83 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC--CGGGTTCSE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH--HHHHhCCcE
Confidence            356999999999999999999999999988888898888888888888778899999999999998877  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        84 ~i~v~d~   90 (207)
T 1vg8_A           84 CVLVFDV   90 (207)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.47  E-value=5.2e-14  Score=126.66  Aligned_cols=85  Identities=21%  Similarity=0.343  Sum_probs=74.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-CeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      .+.+||+++|++|||||||+++|+++.+...+.+|.+.++..+.+..++ ...++.+|||+|++++..++  ..+++++|
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d   81 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKML--DKYIYGAQ   81 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTH--HHHHTTCS
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchh--hHHHhhCC
Confidence            3569999999999999999999999998777778888778777787775 35789999999999998887  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        82 ~~i~v~d~   89 (178)
T 2hxs_A           82 GVLLVYDI   89 (178)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.47  E-value=8.1e-14  Score=128.32  Aligned_cols=87  Identities=21%  Similarity=0.371  Sum_probs=67.1

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      ...+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~  101 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA--KSYFRKA  101 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHH--HHHHHHC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhH--HHHHhhC
Confidence            34457999999999999999999999999888888888888877778888777889999999999998887  6889999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus       102 d~iilv~d~  110 (199)
T 2p5s_A          102 DGVLLLYDV  110 (199)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999996

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.2e-13  Score=129.74  Aligned_cols=85  Identities=25%  Similarity=0.384  Sum_probs=71.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|++..+...+.++.+.++....+.+++....+.+|||+|++++..++  ..+++.+|+
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~   88 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT--SAYYRGAVG   88 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC--GGGTTTCCE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH--HHHhccCCE
Confidence            457999999999999999999999999998888999988888888888677899999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        89 vilV~D~   95 (223)
T 3cpj_B           89 ALIVYDI   95 (223)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEeC
Confidence            9999995

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.47  E-value=9.3e-14  Score=147.35  Aligned_cols=120  Identities=23%  Similarity=0.229  Sum_probs=82.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-----eCCcc--------------------c--C----
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-----LPPDF--------------------Y--P----   56 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-----~~~~~--------------------~--~----   56 (507)
                      ......+|+|+|.+|||||||+|+|++..+.....+..+.++     .....                    .  .    
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            344578999999999999999999999886321111111111     00000                    0  0    


Q ss_pred             Cc-----------eEEEEEeCCCCcc-----------chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCC
Q 010548           57 DR-----------VPVTIIDTSSSLE-----------NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI  114 (507)
Q Consensus        57 ~~-----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~  114 (507)
                      .+           ..+.+|||||...           +......+++.+|++|+|+|+++......... |+..++..  
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~~--  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALRGH--  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTTTC--
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHHhc--
Confidence            00           3689999999864           33555678899999999999988543344333 77766654  


Q ss_pred             CCcEEEEEecccCCCC
Q 010548          115 KVPIIVAGCKLDLRGD  130 (507)
Q Consensus       115 ~~piilv~NK~Dl~~~  130 (507)
                      +.|+++|+||+|+...
T Consensus       218 ~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          218 EDKIRVVLNKADMVET  233 (550)
T ss_dssp             GGGEEEEEECGGGSCH
T ss_pred             CCCEEEEEECCCccCH
Confidence            6899999999999764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.47  E-value=2.2e-13  Score=124.76  Aligned_cols=85  Identities=18%  Similarity=0.310  Sum_probs=73.9

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ....+||+++|++|||||||+++|+++.+...+.+|.+..+.. .+...+....+.+|||+|++++..++  ..+++++|
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d   96 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLR--PLSYADSD   96 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTG--GGGCTTCS
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHh--HhhccCCc
Confidence            4567999999999999999999999999988888888776654 56667677888999999999999887  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        97 ~~i~v~d~  104 (194)
T 3reg_A           97 VVLLCFAV  104 (194)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.46  E-value=1.7e-13  Score=125.20  Aligned_cols=84  Identities=25%  Similarity=0.425  Sum_probs=76.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|++..+...+.++.+.++....+...+...++.+|||+|++++..++  ..+++.+|++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i   91 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT--PSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH--HHHHTTCCEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh--HHHhccCCEE
Confidence            46899999999999999999999999988888898888888888888778899999999999998877  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        92 i~v~d~   97 (195)
T 1x3s_A           92 ILVYDV   97 (195)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999996

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.46  E-value=2.4e-13  Score=124.94  Aligned_cols=85  Identities=24%  Similarity=0.345  Sum_probs=74.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCe-----------------------------
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN-----------------------------  471 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-----------------------------  471 (507)
                      ++.+||+++|++|||||||+++|++..+...+.++.+.++....+...+..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            456999999999999999999999999988888888888888777777544                             


Q ss_pred             --------EEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          472 --------KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       472 --------~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                              ..+.+|||+|++++..+.  ..+++.+|++++|||+
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~v~D~  126 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIV--PLYYRGATCAIVVFDI  126 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTH--HHHHTTCSEEEEEEET
T ss_pred             cccCccceeEEEEEECCCcHHHHHHH--HHHhcCCCEEEEEEEC
Confidence                    789999999999998877  6889999999999996

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.46  E-value=2.6e-13  Score=125.82  Aligned_cols=84  Identities=20%  Similarity=0.307  Sum_probs=73.3

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+...+...++.+|||+|+++|..++  ..+++++|+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~  102 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDA  102 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHH--HhhccCCCE
Confidence            4569999999999999999999999999888888887666 4456777778899999999999998887  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       103 ~ilv~D~  109 (205)
T 1gwn_A          103 VLICFDI  109 (205)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.46  E-value=2e-13  Score=126.72  Aligned_cols=86  Identities=27%  Similarity=0.424  Sum_probs=75.6

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ....+||+++|++|||||||+++|++..+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++.+|
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d   94 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT--TAYYRGAM   94 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC--HHHHTTCS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHhccCC
Confidence            3456999999999999999999999999988888888888888888888667889999999999998877  78999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        95 ~ii~v~d~  102 (213)
T 3cph_A           95 GIILVYDV  102 (213)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999995

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.46  E-value=3.4e-13  Score=122.89  Aligned_cols=85  Identities=15%  Similarity=0.312  Sum_probs=74.8

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeE-EEEEEcCCC---------eEEEEEEecCCchhhhhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGG---------NKKTLILQEIPEEGVKKILS  490 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~Dt~G~~~~~~~~~  490 (507)
                      +..+||+++|++|||||||+++|+++.+...+.++.+.++. .+.+...+.         ..++.+|||+|++++..++ 
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-   87 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT-   87 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH-
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH-
Confidence            45799999999999999999999999998888888887776 666666655         6789999999999999887 


Q ss_pred             chhhcccccEEEEEEeC
Q 010548          491 NKEALASCDVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~ad~vilv~D~  507 (507)
                       ..+++++|++++|||+
T Consensus        88 -~~~~~~~d~~i~v~d~  103 (195)
T 3bc1_A           88 -TAFFRDAMGFLLLFDL  103 (195)
T ss_dssp             -HHTTTTCSEEEEEEET
T ss_pred             -HHHHcCCCEEEEEEEC
Confidence             7899999999999995

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.46  E-value=1.5e-13  Score=126.70  Aligned_cols=86  Identities=19%  Similarity=0.309  Sum_probs=71.2

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      .....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++  ..+++.+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~   96 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILP--YSFIIGV   96 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCC--GGGTTTC
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHH--HHHHhcC
Confidence            445679999999999999999999999999988888888776 5556666677889999999999998887  6899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        97 d~~i~v~d~  105 (201)
T 3oes_A           97 HGYVLVYSV  105 (201)
T ss_dssp             CEEEEEEET
T ss_pred             CEEEEEEeC
Confidence            999999995

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.46  E-value=2.1e-13  Score=123.22  Aligned_cols=83  Identities=18%  Similarity=0.323  Sum_probs=73.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++...++.+|||+|++++..+.  ..+++.+|++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~   81 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP--QTYSIDINGY   81 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCC--GGGTTTCSEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHH--HHHHhcCCEE
Confidence            468999999999999999999999999888888888776 5667777677889999999999998777  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        82 i~v~d~   87 (181)
T 3t5g_A           82 ILVYSV   87 (181)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.46  E-value=4.6e-14  Score=127.82  Aligned_cols=85  Identities=24%  Similarity=0.406  Sum_probs=52.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++...++.+|||+|++++..++  ..+++++|+
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   83 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--TAYYRGAMG   83 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C--CTTTTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH--HHHHhcCCE
Confidence            457999999999999999999999998887777888877877777777677899999999999998887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        84 ~i~v~d~   90 (183)
T 2fu5_C           84 IMLVYDI   90 (183)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.45  E-value=4.2e-14  Score=129.33  Aligned_cols=86  Identities=21%  Similarity=0.334  Sum_probs=78.2

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      .++.+||+++|++|||||||+++|+++.+...+.++.++++....+...+....+.+|||+|++++..++  ..+++.+|
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d   97 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT--TAYYRGAM   97 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHH--HHHHTTCC
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHH--HHHHccCC
Confidence            4567999999999999999999999999988888888888888888888788999999999999999887  78999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        98 ~~i~v~d~  105 (191)
T 3dz8_A           98 GFILMYDI  105 (191)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.45  E-value=3.5e-13  Score=121.43  Aligned_cols=85  Identities=21%  Similarity=0.395  Sum_probs=67.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      +..+||+++|++|||||||+++|+++.+.. .+.++.+.++....+..++...++.+|||+|++++..++  ..+++.+|
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d   85 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT--HAYYRDAH   85 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH--HHHccCCC
Confidence            456999999999999999999999999854 566777777777666777677899999999999998877  68899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        86 ~ii~v~d~   93 (180)
T 2g6b_A           86 ALLLLYDV   93 (180)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.45  E-value=2.8e-13  Score=122.56  Aligned_cols=85  Identities=20%  Similarity=0.355  Sum_probs=75.0

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ..+.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++++..++  ..+++.+|
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d   91 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR--EQYMRTGD   91 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSH--HHHHHHCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHH--HHHHhcCC
Confidence            34579999999999999999999999999888888888777 6667777677788899999999999887  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        92 ~~i~v~d~   99 (183)
T 3kkq_A           92 GFLIVYSV   99 (183)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.44  E-value=2.1e-13  Score=122.99  Aligned_cols=85  Identities=18%  Similarity=0.414  Sum_probs=63.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC-CCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ...+||+++|++|||||||+++|++..+...+.++.+.++....+..+ +....+.+|||+|++++..++  ..+++.+|
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d   83 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG--VAFYRGAD   83 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhh--HHHhhcCC
Confidence            356999999999999999999999999988888888888877777776 456789999999999998887  67899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        84 ~~i~v~d~   91 (182)
T 1ky3_A           84 CCVLVYDV   91 (182)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999995

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.44  E-value=3.8e-14  Score=142.21  Aligned_cols=151  Identities=15%  Similarity=0.082  Sum_probs=88.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC------CC-CCCC-CC---------------------------CCC------Cee
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATE------SV-PEKV-PP---------------------------VHA------PTR   49 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~------~~-~~~~-~~---------------------------~~~------~~t   49 (507)
                      ....|+|+|.||||||||+|+|++.      +. .... +.                           ..+      +++
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            4689999999999999999999862      10 0000 00                           000      011


Q ss_pred             eC-----CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEec
Q 010548           50 LP-----PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCK  124 (507)
Q Consensus        50 ~~-----~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK  124 (507)
                      ..     ..+...++.+.++||+|....   .......+|++++|+|++.+...+.+.    ..+    ...|.++|+||
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK  221 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTK  221 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEee
Confidence            00     001135678999999996422   234568999999999998764332221    111    15688999999


Q ss_pred             ccCCCCCCccchhhhhHHHHHHhc--------ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          125 LDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       125 ~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      +|+.....   .......+...+.        ...+++.+||++|.|+++++++|.+.+
T Consensus       222 ~Dl~~~~~---~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          222 SDGDLIVP---ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             CSGGGHHH---HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ecCCCchh---HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            99864211   0111222222111        013689999999999999999998865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=126.10  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-hccchhhcccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-ILSNKEALASC  498 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~a  498 (507)
                      ....+||+++|++|||||||+++|++..+...+.++.+.++..+.+.+++...++.+|||+|++++.. ++  ..+++.+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~--~~~~~~~   97 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLR--DHCLQTG   97 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHH--HHHHHHC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhH--HHhhccC
Confidence            34579999999999999999999987665545556666666666777787778999999999988765 54  5788999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        98 d~~ilv~d~  106 (195)
T 3cbq_A           98 DAFLIVFSV  106 (195)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999996

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.44  E-value=3.6e-13  Score=119.55  Aligned_cols=82  Identities=23%  Similarity=0.325  Sum_probs=72.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+...++.+|||+|++++..++  ..+++++|+++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~i   79 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMR--DLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHH--HHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHH--HHHhccCCEEE
Confidence            589999999999999999999999998888888876654 556677778899999999999998887  68899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 ~v~d~   84 (167)
T 1c1y_A           80 LVYSI   84 (167)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99995

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.43  E-value=1.9e-14  Score=144.97  Aligned_cols=106  Identities=13%  Similarity=0.046  Sum_probs=71.4

Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~  136 (507)
                      .++.+.||||||...   .....+..+|++++|+|.........+.        ....++|+++|+||+|+......   
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~~~~~~p~ivVlNK~Dl~~~~~~---  235 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------KGVLELADIVVVNKADGEHHKEA---  235 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------TTSGGGCSEEEEECCCGGGHHHH---
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------HhHhhcCCEEEEECCCCcChhHH---
Confidence            468899999999543   2334569999999999987765443221        11114699999999998643111   


Q ss_pred             hhhhHHHHHH---hc-----ccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          137 EEVMGPIMQQ---FR-----EIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       137 ~~~~~~~~~~---~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ......+...   ++     ...++++|||++|.|++++++.|.+.+.
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            1112222222   11     1137999999999999999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.43  E-value=3.5e-13  Score=122.86  Aligned_cols=84  Identities=19%  Similarity=0.271  Sum_probs=68.1

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ....+||+++|++|||||||+++|+++.+...+.+|.+..+. ..+...+...++.+|||+|++++..+   ..+++.+|
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~~   93 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC---ERYLNWAH   93 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT---HHHHTTCS
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH---HHHHhhCC
Confidence            345699999999999999999999999998888888886663 44566667789999999999988864   36899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        94 ~~ilv~d~  101 (187)
T 3c5c_A           94 AFLVVYSV  101 (187)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.42  E-value=4.3e-13  Score=120.73  Aligned_cols=84  Identities=20%  Similarity=0.344  Sum_probs=73.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++++..++  ..+++.+|+
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~   83 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMR--EQYMRAGHG   83 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCH--HHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHHHhhCCE
Confidence            45689999999999999999999999988888888776665 556677667789999999999998877  688999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        84 ~i~v~d~   90 (181)
T 2fn4_A           84 FLLVFAI   90 (181)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            9999995

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.42  E-value=5.1e-13  Score=124.07  Aligned_cols=84  Identities=15%  Similarity=0.337  Sum_probs=71.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..++....+.+|||+|+++|..++  ..+++++|+
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~   83 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLR--PLSYRGADI   83 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC----CGGGTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHH--HhhccCCCE
Confidence            3569999999999999999999999999888888887655 4456677677899999999999999887  679999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        84 ~ilv~d~   90 (212)
T 2j0v_A           84 FVLAFSL   90 (212)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.42  E-value=9e-14  Score=130.18  Aligned_cols=154  Identities=13%  Similarity=0.064  Sum_probs=93.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCCCC-----------Cee-eCCc------c----------cCCc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK----VPPVHA-----------PTR-LPPD------F----------YPDR   58 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~~~~~~-----------~~t-~~~~------~----------~~~~   58 (507)
                      +..+|+|+|.+|||||||+++|+.......    +.....           +.+ ....      +          ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            346899999999999999999986521110    000000           000 0000      0          2235


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhh
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE  138 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~  138 (507)
                      ..+.+|||+|+.....   .+...++.+++|+|+++....  ... +.   ...  +.|+++|+||+|+...... .. +
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~---~~~--~~~~iiv~NK~Dl~~~~~~-~~-~  175 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HP---EIF--RVADLIVINKVALAEAVGA-DV-E  175 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CH---HHH--HTCSEEEEECGGGHHHHTC-CH-H
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hh---hhh--hcCCEEEEecccCCcchhh-HH-H
Confidence            6789999999521111   111357899999998876421  111 11   122  5789999999998643211 12 2


Q ss_pred             hhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          139 VMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      ........++...+++++||++|.|+++++++|.+.+..
T Consensus       176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            233333444333478999999999999999999887643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.42  E-value=4.1e-13  Score=123.54  Aligned_cols=86  Identities=19%  Similarity=0.386  Sum_probs=64.3

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      .....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..++....+.+|||+|++++..++  ..+++++
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~   92 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLR--PLCYTNT   92 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSG--GGGGTTC
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHh--HhhcCCC
Confidence            345679999999999999999999999998877777776555 4456666667788999999999999887  6789999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        93 ~~~i~v~d~  101 (201)
T 2q3h_A           93 DIFLLCFSV  101 (201)
T ss_dssp             SEEEEEEET
T ss_pred             cEEEEEEEC
Confidence            999999995

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.42  E-value=5.8e-13  Score=121.81  Aligned_cols=84  Identities=21%  Similarity=0.381  Sum_probs=73.2

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+..++...++.+|||+|++++..++  ..+++.+|+
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~   92 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDV   92 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTG--GGGCTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHH--HHhcCCCCE
Confidence            3569999999999999999999999998888888877665 4556777677899999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        93 ~i~v~d~   99 (194)
T 2atx_A           93 FLICFSV   99 (194)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.42  E-value=5e-13  Score=118.41  Aligned_cols=82  Identities=23%  Similarity=0.351  Sum_probs=71.5

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++  ..+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~~~~i   79 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGFI   79 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCSEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHH--HHHhccCCEEE
Confidence            48999999999999999999999999888878777555 5566677677789999999999998887  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 ~v~d~   84 (167)
T 1kao_A           80 LVYSL   84 (167)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            99995

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.42  E-value=3.4e-13  Score=120.17  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|++..+...+.++.+.+.....+..++....+.+|||+|++++..... ..+++.+|+++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-~~~~~~~d~~i   80 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ-DHCLQTGDAFL   80 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------CHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhh-hhhhccCCEEE
Confidence            58999999999999999999999888877777777777777788887788999999999998876332 56789999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        81 ~v~d~   85 (169)
T 3q85_A           81 IVFSV   85 (169)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99996

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.42  E-value=2.4e-13  Score=126.79  Aligned_cols=87  Identities=13%  Similarity=0.246  Sum_probs=74.7

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC----------eEEEEEEecCCchhhhhh
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG----------NKKTLILQEIPEEGVKKI  488 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~Dt~G~~~~~~~  488 (507)
                      ..++.+||+++|++|||||||+++|++..+...+.++.+.++..+.+.+.+.          ..++.+|||+|++++..+
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            3456799999999999999999999999987777778877777766766655          678999999999999988


Q ss_pred             ccchhhcccccEEEEEEeC
Q 010548          489 LSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       489 ~~~~~~~~~ad~vilv~D~  507 (507)
                      +  ..+++.+|++++|||+
T Consensus       101 ~--~~~~~~~d~iilV~D~  117 (217)
T 2f7s_A          101 T--TAFFRDAMGFLLMFDL  117 (217)
T ss_dssp             H--HHHHTTCCEEEEEEET
T ss_pred             H--HHHhcCCCEEEEEEEC
Confidence            7  6899999999999996

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.41  E-value=9.1e-13  Score=119.24  Aligned_cols=83  Identities=20%  Similarity=0.380  Sum_probs=71.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++  ..+++.+|++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~   80 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVS   80 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTG--GGGCTTCSEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHH--HHhccCCcEE
Confidence            458999999999999999999999998888777777655 3445666677889999999999998887  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        81 i~v~d~   86 (186)
T 1mh1_A           81 LICFSL   86 (186)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.41  E-value=7.8e-13  Score=121.95  Aligned_cols=84  Identities=20%  Similarity=0.329  Sum_probs=73.2

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+.. .+..++....+.+|||+|++++..++  ..+++++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~   99 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDV   99 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTG--GGGCTTCSE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHH--HHhcCCCCE
Confidence            356899999999999999999999999988888888877654 45667667789999999999999887  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       100 ~i~v~d~  106 (201)
T 2gco_A          100 ILMCFSI  106 (201)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.41  E-value=5.9e-13  Score=121.06  Aligned_cols=80  Identities=21%  Similarity=0.327  Sum_probs=67.8

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      .....+||+++|++|||||||+++|+++.+...+.++.+ .+ .+.+.+++....+.+|||+|++++.       +++++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~   86 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-------FAAWV   86 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-------HHHHC
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-------eecCC
Confidence            345679999999999999999999999999887877743 34 4677788777899999999998766       67889


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        87 ~~~i~v~d~   95 (184)
T 3ihw_A           87 DAVVFVFSL   95 (184)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999996

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.41  E-value=5.4e-13  Score=120.11  Aligned_cols=77  Identities=26%  Similarity=0.356  Sum_probs=65.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++.. +.+|.+..+ .+.+..++...++.+|||+|+++       ..+++++|++
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~d~~   76 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-------AKFSGWADAV   76 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-------HHHHHHCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-------hHHHHhCCEE
Confidence            46999999999999999999999999886 667777555 56677776778899999999976       3577899999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        77 ilv~D~   82 (178)
T 2iwr_A           77 IFVFSL   82 (178)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999996

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.40  E-value=3.6e-13  Score=145.51  Aligned_cols=115  Identities=19%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC----C---CCCCC--------Cee---eCCcccCCceEEEEEeCCCCccch
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK----V---PPVHA--------PTR---LPPDFYPDRVPVTIIDTSSSLENK   73 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~----~---~~~~~--------~~t---~~~~~~~~~~~~~i~Dt~G~~~~~   73 (507)
                      ..+|+|+|+.++|||||..+|+...-...    .   .+..+        ++|   ....+.++++.++|+||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            35799999999999999999973221111    0   00000        222   223455788999999999999999


Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      ......++-+|++|+|+|+..+-..+...  .+..+.+.  ++|.|+++||+|....
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~--v~~~a~~~--~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTRI--LFHALRKM--GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHHH--HHHHHHHH--TCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHHH--HHHHHHHc--CCCeEEEEeccccccC
Confidence            99999999999999999999885554433  55566666  7999999999998654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.40  E-value=8.1e-13  Score=117.19  Aligned_cols=83  Identities=25%  Similarity=0.382  Sum_probs=68.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...++..++.+|||+|++++..++  ..+++.+|++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~--~~~~~~~d~~   79 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGEGF   79 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHH--HHHHHHCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHH--HHHhhcCCEE
Confidence            3589999999999999999999999988888777776653 345666667789999999999998887  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~d~   85 (168)
T 1u8z_A           80 LCVFSI   85 (168)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.40  E-value=2.3e-13  Score=138.94  Aligned_cols=158  Identities=17%  Similarity=0.143  Sum_probs=76.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCC----CCCee---eCCccc--CCceEEEEEeCCCCccch-------h
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV----HAPTR---LPPDFY--PDRVPVTIIDTSSSLENK-------G   74 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~----~~~~t---~~~~~~--~~~~~~~i~Dt~G~~~~~-------~   74 (507)
                      .++|+|+|++|||||||+|+|++..+... ....    .+...   +...+.  .....+.+|||+|.....       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            57899999999999999999998775311 1100    01111   111111  223578999999986531       1


Q ss_pred             h------------------hHHhhccCC--EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCcc
Q 010548           75 K------------------LNEELKRAD--AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNAT  134 (507)
Q Consensus        75 ~------------------~~~~~~~ad--~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~  134 (507)
                      .                  ...++.+++  ++|++.+.+. .++......|+..+..   ++|+|+|+||+|+...+.+.
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~~ev~  186 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ  186 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHhc---cCcEEEEEEcccCccHHHHH
Confidence            1                  012234444  4555544431 2344443347777653   79999999999997644331


Q ss_pred             chhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .....+...+...+.  +++++||+++.++.+++..+...+
T Consensus       187 ~~k~~i~~~~~~~~i--~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          187 QFKKQIMKEIQEHKI--KIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHTC--CCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHcCC--eEEeCCCCCCcCHHHHHHHHHhhC
Confidence            112344455555543  689999999999999888776654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.40  E-value=1e-12  Score=120.98  Aligned_cols=84  Identities=25%  Similarity=0.401  Sum_probs=73.0

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++++++..+...+.++.+.++....+.++|....+.+|||+|++++..+.  ..+++.++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--~~~~~~~~~~   81 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT--SAYYRGAVGA   81 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC--HHHHTTCSEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh--HHHHhcCCEE
Confidence            46899999999999999999999999998888998888888888888777889999999999988776  6788999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        82 i~v~d~   87 (199)
T 2f9l_A           82 LLVYDI   87 (199)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=6.6e-12  Score=125.32  Aligned_cols=83  Identities=18%  Similarity=0.286  Sum_probs=54.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCCC-CCeeeCCcccCC---------------ceEEEEEeCCCCccchh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPE-KVPPVH-APTRLPPDFYPD---------------RVPVTIIDTSSSLENKG   74 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~~-~~~t~~~~~~~~---------------~~~~~i~Dt~G~~~~~~   74 (507)
                      .++|+|+|.||||||||+|+|++..+.. +++... ....-...+...               ...+.+|||||+.++..
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            3799999999999999999999876322 232211 111000111110               25799999999876531


Q ss_pred             -------hhHHhhccCCEEEEEEeCCC
Q 010548           75 -------KLNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        75 -------~~~~~~~~ad~il~V~D~~~   94 (507)
                             ....+++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                   22356899999999999986

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.39  E-value=8.7e-13  Score=121.64  Aligned_cols=86  Identities=24%  Similarity=0.363  Sum_probs=73.2

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      .....+||+++|++|||||||+++|+++.+...+.++.+..+. ..+..++....+.+|||+|++++..++  ..+++.+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~   86 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSG   86 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHH--HHHHhhC
Confidence            3446799999999999999999999999988888888776653 455666667789999999999998887  6889999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        87 ~~~i~v~d~   95 (206)
T 2bov_A           87 EGFLCVFSI   95 (206)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999996

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.39  E-value=1.2e-12  Score=121.05  Aligned_cols=84  Identities=20%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++++..++  ..+++++|+
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~  104 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLR--PLSYPQTDV  104 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTG--GGGCTTCSE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHH--HHHhccCCE
Confidence            4569999999999999999999999999877777776444 4556777778888999999999999887  679999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       105 ~i~v~d~  111 (204)
T 4gzl_A          105 FLICFSL  111 (204)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.39  E-value=6.7e-13  Score=120.98  Aligned_cols=82  Identities=17%  Similarity=0.289  Sum_probs=69.7

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      .+..+||+++|++|||||||+++|+++++...+.+|.+..+.  .+.  .+..++.+|||+|++++..++  ..+++.+|
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d   92 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KIT--KGNVTIKLWDIGGQPRFRSMW--ERYCRGVS   92 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEE--ETTEEEEEEEECCSHHHHTTH--HHHHTTCS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEE--eCCEEEEEEECCCCHhHHHHH--HHHHccCC
Confidence            345799999999999999999999999998777788776553  232  357789999999999999887  67899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        93 ~ii~v~D~  100 (188)
T 1zd9_A           93 AIVYMVDA  100 (188)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.39  E-value=1e-12  Score=120.45  Aligned_cols=83  Identities=18%  Similarity=0.305  Sum_probs=66.1

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCC-CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      ......||+++|++|||||||+++|++..+.. .+.+|.+..  ...+.  +....+.+|||+|++++..++  ..++++
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~--~~~~~~~i~Dt~G~~~~~~~~--~~~~~~   86 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFE--KGRVAFTVFDMGGAKKFRGLW--ETYYDN   86 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEE--ETTEEEEEEEECCSGGGGGGG--GGGCTT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEE--eCCEEEEEEECCCCHhHHHHH--HHHHhc
Confidence            34567899999999999999999999999988 677777733  33333  467889999999999999888  689999


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      +|++++|||+
T Consensus        87 ~d~ii~v~D~   96 (199)
T 4bas_A           87 IDAVIFVVDS   96 (199)
T ss_dssp             CSEEEEEEET
T ss_pred             CCEEEEEEEC
Confidence            9999999996

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.39  E-value=8.6e-13  Score=142.94  Aligned_cols=159  Identities=15%  Similarity=0.095  Sum_probs=100.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCCCCC----------eee--------------------------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEK---VPPVHAP----------TRL--------------------------   50 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~---~~~~~~~----------~t~--------------------------   50 (507)
                      ....+|+|+|.+++|||||+|+|++..+.+.   ..+..+.          ...                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            3457999999999999999999999876322   1111000          000                          


Q ss_pred             ---CCcc----------cCCceEEEEEeCCCCccc-------------hhhhHHhh-ccCCEEEEEEeCCChhhHHHHHH
Q 010548           51 ---PPDF----------YPDRVPVTIIDTSSSLEN-------------KGKLNEEL-KRADAVVLTYACNQQSTLSRLSS  103 (507)
Q Consensus        51 ---~~~~----------~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~-~~ad~il~V~D~~~~~s~~~~~~  103 (507)
                         ...+          .+....+.++||||....             ..+...++ ..+|++++|+|++...+..+...
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence               0000          012335789999997541             12333444 58899999999987644444322


Q ss_pred             hHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhH--HHHHHhcccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          104 YWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMG--PIMQQFREIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       104 ~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                       ++..+...  ++|+|+|+||+|+...... . .....  .+....+ ..+++.+||++|.|+++|++.+.+.
T Consensus       209 -ll~~L~~~--g~pvIlVlNKiDlv~~~~~-~-~~il~~~~~~l~lg-~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 -IAKEVDPQ--GQRTIGVITKLDLMDEGTD-A-RDVLENKLLPLRRG-YIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             -HHHHHCTT--CSSEEEEEECTTSSCTTCC-S-HHHHTTCSSCCSSC-EEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             -HHHHHHhc--CCCEEEEEeCcccCCcchh-h-HHHHHHHhhhhhcc-CCceEEecccccccchhHHHHHHHH
Confidence             56666554  7999999999999865332 1 11100  0000112 1257889999999999999999873

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.39  E-value=6.6e-13  Score=123.80  Aligned_cols=83  Identities=22%  Similarity=0.382  Sum_probs=52.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+...++.+|||+|++++..++  ..+++++|++
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--~~~~~~~d~~  109 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLR--PLFYPDASVL  109 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC-----------------CEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHH--HHHhccCCEE
Confidence            469999999999999999999999998888888777655 4456667677789999999999998887  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus       110 i~v~d~  115 (214)
T 2j1l_A          110 LLCFDV  115 (214)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999996

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.39  E-value=1.1e-12  Score=117.54  Aligned_cols=83  Identities=17%  Similarity=0.270  Sum_probs=60.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh--hhhhccchhhccccc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG--VKKILSNKEALASCD  499 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~~~~~~~~~~ad  499 (507)
                      +.+||+++|++|||||||+++|++..+...+.++ ++++..+.+..++...++.+|||+|+++  +..+.  ..+++.+|
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~--~~~~~~~~   79 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQL-GEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQ--ESCLQGGS   79 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCS-SSSEEEEEEEETTEEEEEEEECCC-------CHHH--HHTTTSCS
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCcc-ccceeEEEEEECCEEEEEEEEecCCCCccchhhhH--HhhcccCC
Confidence            4689999999999999999999999987766554 4455566677776777899999999987  44444  57889999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        80 ~~i~v~d~   87 (175)
T 2nzj_A           80 AYVIVYSI   87 (175)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.39  E-value=1e-12  Score=121.77  Aligned_cols=83  Identities=20%  Similarity=0.356  Sum_probs=66.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+... +...+....+.+|||+|++++..++  ..+++.+|++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~  100 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLR--PLSYPDTDVI  100 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTG--GGGCTTCCEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHH--HhhcCCCCEE
Confidence            458999999999999999999999999888888877666443 5666667789999999999998877  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus       101 i~v~d~  106 (207)
T 2fv8_A          101 LMCFSV  106 (207)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.38  E-value=6.6e-13  Score=132.82  Aligned_cols=119  Identities=12%  Similarity=0.072  Sum_probs=88.2

Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC----------ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEec
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN----------QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCK  124 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK  124 (507)
                      +.+.+.+|||+|++.++..+..++++++++|+|||++          +..+++.... |+..+...  .++.|+|||+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence            5689999999999999999999999999999999998          7888998876 77766543  357999999999


Q ss_pred             ccCCCCCCc-cc------------------hhhhhHHH-HHHh-------------cccCcEEEeCcccCCCchHHHHHH
Q 010548          125 LDLRGDHNA-TS------------------LEEVMGPI-MQQF-------------REIETCVECSATTMIQVPDVFYYA  171 (507)
Q Consensus       125 ~Dl~~~~~~-~~------------------~~~~~~~~-~~~~-------------~~~~~~~~~SA~~g~gi~~l~~~i  171 (507)
                      +|+..++.. ..                  ..+....+ ..++             +....+++|||+++.||.++|+.+
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            998543110 00                  01233333 3332             111246899999999999999999


Q ss_pred             HHHHc
Q 010548          172 QKAVL  176 (507)
Q Consensus       172 ~~~i~  176 (507)
                      .+.+.
T Consensus       340 ~~~I~  344 (354)
T 2xtz_A          340 DETLR  344 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.38  E-value=1.1e-12  Score=119.06  Aligned_cols=83  Identities=20%  Similarity=0.328  Sum_probs=68.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++....+.+|||+|++++..++  ..+++.+|++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~   79 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGF   79 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTTH--HHHHHHCSEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHHH--HHHHhcCCEE
Confidence            468999999999999999999999998888877776544 4456667677788999999999999887  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~d~   85 (189)
T 4dsu_A           80 LCVFAI   85 (189)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.38  E-value=1.3e-12  Score=119.54  Aligned_cols=85  Identities=25%  Similarity=0.366  Sum_probs=76.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||++++++..+...+.+|.+.++....+.++|....+.+|||+|++++..++  ..+++.+++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~--~~~~~~~~~  104 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT--SAYYRGAVG  104 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC--HHHHTTCCE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh--HHHhhcCCE
Confidence            457999999999999999999999999998999999988888888888777788899999999988777  678899999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       105 ~i~v~d~  111 (191)
T 1oix_A          105 ALLVYDI  111 (191)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.38  E-value=3.3e-13  Score=124.57  Aligned_cols=85  Identities=24%  Similarity=0.352  Sum_probs=46.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcC--CCCCCCCCCccceeEEEEEEcCCC--eEEEEEEecCCchhhhhhccchhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQPGG--NKKTLILQEIPEEGVKKILSNKEALA  496 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~  496 (507)
                      ...+||+++|++|||||||+++|++.  .+...+.+|.+.++....+..++.  ...+.+|||+|++++..++  ..+++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~   95 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQI--SQYWN   95 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHH--STTCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHH--HHHHh
Confidence            35689999999999999999999999  777777778777777777888866  7899999999999999887  68999


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+|++++|||+
T Consensus        96 ~~d~~i~v~d~  106 (208)
T 2yc2_C           96 GVYYAILVFDV  106 (208)
T ss_dssp             CCCEEEEEEET
T ss_pred             hCcEEEEEEEC
Confidence            99999999996

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.38  E-value=3.4e-12  Score=122.72  Aligned_cols=115  Identities=19%  Similarity=0.046  Sum_probs=70.6

Q ss_pred             ceEEEEEeCCCCccchhhhH------HhhccCCEEEEEEeCCChhhHHHHHHhH---HHHHHhcCCCCcEEEEEecccCC
Q 010548           58 RVPVTIIDTSSSLENKGKLN------EELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~il~V~D~~~~~s~~~~~~~~---~~~l~~~~~~~piilv~NK~Dl~  128 (507)
                      .+.+.+|||||..+......      .++.. +++++|+|+....+.......+   .......  ++|+++|+||+|+.
T Consensus       108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLL  184 (262)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGC
T ss_pred             cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc--CCCeEEEEeccccc
Confidence            35899999999865433221      24566 8999999986544433322211   1112222  68999999999987


Q ss_pred             CCCCccchhh---hhH----H-----------------HHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          129 GDHNATSLEE---VMG----P-----------------IMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       129 ~~~~~~~~~~---~~~----~-----------------~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .........+   ...    .                 +...++...+++++||++|.|+++++++|.+.+
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence            5321100011   000    1                 123333323689999999999999999998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.38  E-value=1.5e-12  Score=116.03  Aligned_cols=82  Identities=23%  Similarity=0.392  Sum_probs=69.5

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++++..++  ..+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~--~~~~~~~~~~i   79 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQ--RLSISKGHAFI   79 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHH--HHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHH--HHhcccCCEEE
Confidence            589999999999999999999999988777777765543 345556567789999999999988877  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 ~v~d~   84 (172)
T 2erx_A           80 LVYSI   84 (172)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99995

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.38  E-value=3.4e-13  Score=126.26  Aligned_cols=86  Identities=19%  Similarity=0.291  Sum_probs=75.5

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ....+||+++|++|||||||+++|+.+.+...+.++.+++.....+...++...+.+|||+|++++..++  ..+++++|
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~   89 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR--DGYYIQAQ   89 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC--HHHHTTCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH--HHHHhcCC
Confidence            3456999999999999999999998888777777888877777777777778899999999999998877  78999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        90 ~~i~v~d~   97 (221)
T 3gj0_A           90 CAIIMFDV   97 (221)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.38  E-value=1.4e-12  Score=118.08  Aligned_cols=84  Identities=25%  Similarity=0.369  Sum_probs=71.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++++..++  ..+++.+|+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   92 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGEG   92 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHH--HHHhccCCE
Confidence            45699999999999999999999999988888777776653 445666567789999999999998887  688999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        93 ~i~v~d~   99 (187)
T 2a9k_A           93 FLCVFSI   99 (187)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.37  E-value=8.6e-14  Score=128.14  Aligned_cols=86  Identities=27%  Similarity=0.439  Sum_probs=74.4

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ..+.+||+++|++|||||||+++|+++.+...+.++.+.++....+..++....+.+|||+|++++..++  ..+++++|
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d  107 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--SSYYRGAH  107 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS--CC--CCCS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH--HHHhhcCC
Confidence            3467999999999999999999999999988888888888888888888777899999999999998877  67999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus       108 ~~i~v~d~  115 (199)
T 3l0i_B          108 GIIVVYDV  115 (199)
T ss_dssp             EEEECC-C
T ss_pred             EEEEEEEC
Confidence            99999995

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.37  E-value=9e-13  Score=131.86  Aligned_cols=118  Identities=15%  Similarity=0.119  Sum_probs=90.5

Q ss_pred             CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHhHHHHHHhc--CCCCcEEEEEe
Q 010548           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC  123 (507)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~N  123 (507)
                      .+++.+.+|||+|++.++..+..++++++++|||||+++          ..++.+... |+..+...  ..+.|+|||+|
T Consensus       190 ~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~N  268 (353)
T 1cip_A          190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLN  268 (353)
T ss_dssp             ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEE
T ss_pred             eCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEE
Confidence            357899999999999999999999999999999999999          466888776 77666553  35799999999


Q ss_pred             cccCCCCC---------------CccchhhhhHHHHH-Hh--------cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          124 KLDLRGDH---------------NATSLEEVMGPIMQ-QF--------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       124 K~Dl~~~~---------------~~~~~~~~~~~~~~-~~--------~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      |+|+....               .+ .. +.+..++. .+        .....+++|||+++.||.++|+++.+.+.
T Consensus       269 K~DL~~~ki~~~~l~~~fp~~~g~~-~~-~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          269 KKDLFEEKIKKSPLTICYPEYAGSN-TY-EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             CHHHHHHHHTTSCGGGTCTTCCSCS-CH-HHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             CcCchhhhccccchhhcccccCCCC-CH-HHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            99985321               12 22 23333333 11        11236899999999999999999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.37  E-value=1.8e-12  Score=120.64  Aligned_cols=85  Identities=21%  Similarity=0.301  Sum_probs=65.5

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCC--CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh-hhhhccchhhcc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALA  496 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~  496 (507)
                      ....+||++||++|||||||+++|++...  ...+ ++.+.++..+.+.+++...++.+|||+|++. +..+.  ..+++
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~--~~~~~  110 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQ  110 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHH--HCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHH--HHHHh
Confidence            34569999999999999999999997654  3333 3455566667777887777889999999887 44454  57889


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+|++++|||+
T Consensus       111 ~a~~~ilVydv  121 (211)
T 2g3y_A          111 VGDAYLIVYSI  121 (211)
T ss_dssp             CCSEEEEEEET
T ss_pred             hCCEEEEEEEC
Confidence            99999999996

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.37  E-value=4.9e-13  Score=121.47  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcC--CCCCCCCCCccceeEEEEEEc---CCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLER--PFSENYAPTTGEQYAVNVVDQ---PGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      .+||+++|++|||||||+++|++.  .+...+.+|.+.++....+..   .+....+.+|||+|+++|..+.  ..++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~   79 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH--PHFMTQ   79 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS--HHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh--HHHccC
Confidence            379999999999999999999985  455556677777665544433   2346688999999999999877  688999


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      ++++++|||+
T Consensus        80 ~~~~i~v~d~   89 (184)
T 2zej_A           80 RALYLAVYDL   89 (184)
T ss_dssp             SEEEEEEEEG
T ss_pred             CcEEEEEEeC
Confidence            9999999995

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.37  E-value=8.6e-13  Score=117.16  Aligned_cols=81  Identities=22%  Similarity=0.333  Sum_probs=48.6

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|++..+...+. +.++.+ ...+...+....+.+|||+|++++..+.  ..+++.+|+++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~i   77 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAE-AAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLP--GHCMAMGDAYV   77 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC-----------------CCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCC-ccccce-EEEEEECCEEEEEEEEECCCCccchhhh--hhhhhhCCEEE
Confidence            4899999999999999999999888765543 344444 3456677788899999999999998887  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        78 ~v~d~   82 (166)
T 3q72_A           78 IVYSV   82 (166)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99995

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.36  E-value=3.9e-13  Score=121.37  Aligned_cols=83  Identities=20%  Similarity=0.386  Sum_probs=56.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++.+...+.+|.+..+.. .+...+....+.+|||+|++++..++  ..+++++|++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~   83 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLR--PLSYRGADVF   83 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTG--GGGGTTCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhH--HhhccCCCEE
Confidence            45899999999999999999999999887777776654432 23344456678899999999999887  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        84 i~v~d~   89 (182)
T 3bwd_D           84 ILAFSL   89 (182)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.36  E-value=2.3e-13  Score=136.27  Aligned_cols=107  Identities=14%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccc
Q 010548           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS  135 (507)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~  135 (507)
                      ..++.+.+|||||......   ...+.+|++++|+|++.+.....+.    ...  .  ++|.++|+||+|+......  
T Consensus       146 ~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~~~--~--~~p~ivv~NK~Dl~~~~~~--  212 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----KGL--M--EVADLIVINKDDGDNHTNV--  212 (341)
T ss_dssp             HTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----HHH--H--HHCSEEEECCCCTTCHHHH--
T ss_pred             ccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----Hhh--h--cccCEEEEECCCCCChHHH--
Confidence            3467899999999765433   3568999999999987654321111    011  1  4688999999998653111  


Q ss_pred             hhhhhHHHHH---Hhcc-----cCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          136 LEEVMGPIMQ---QFRE-----IETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       136 ~~~~~~~~~~---~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                       ......+..   .++.     ..+++++||++|.|++++++.|.+.+.
T Consensus       213 -~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          213 -AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             -HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             111122222   2221     236899999999999999999988653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.36  E-value=1.7e-12  Score=118.99  Aligned_cols=83  Identities=24%  Similarity=0.301  Sum_probs=70.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++++...+.++.+..+ ...+...+...++.+|||+|+++ ...+  ..+++.+|+
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~--~~~~~~~d~  101 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQR--EGHMRWGEG  101 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHH--HHHHHHCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccch--hhhhccCCE
Confidence            3468999999999999999999999999888888888766 34456666778899999999987 5555  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       102 iilv~D~  108 (196)
T 2atv_A          102 FVLVYDI  108 (196)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.35  E-value=1.2e-12  Score=122.08  Aligned_cols=85  Identities=19%  Similarity=0.250  Sum_probs=71.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC-eEEEEEEecCCchhhhhhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ...+||+++|++|||||||+|+|+++.+...+.++.+..+........++ ...+.+|||+|++++..++  ..+++.+|
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d   86 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--DVYYIGAS   86 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC--HHHHTTCS
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH--HHHhhcCC
Confidence            35699999999999999999999999988777788876665555555433 3789999999999998777  68899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        87 ~~i~v~d~   94 (218)
T 4djt_A           87 GAILFFDV   94 (218)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEeC
Confidence            99999996

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.35  E-value=6.9e-13  Score=145.21  Aligned_cols=235  Identities=13%  Similarity=0.126  Sum_probs=135.5

Q ss_pred             CCCCCC-CCceEEEEEcCCCCCHHHHHHHHhcCC--------CCC-C-CC-----CCCCCeeeCC-----cc-----cCC
Q 010548            4 GSGSSS-RTGVRVVVVGDRGTGKSSLIAAAATES--------VPE-K-VP-----PVHAPTRLPP-----DF-----YPD   57 (507)
Q Consensus         4 m~~~~~-~~~~kV~ivG~~~vGKSSLin~l~~~~--------~~~-~-~~-----~~~~~~t~~~-----~~-----~~~   57 (507)
                      |+...+ .+..+|+|+|+.++|||||..+|+...        ... . +.     -...++|+..     .+     ..+
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            444433 345579999999999999999997321        000 0 00     0111222111     11     123


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~  137 (507)
                      ++.++|+||||+.+|......+++-+|++|+|+|+..+-..+...  .++...+.  ++|.++++||+|....    ...
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~--v~~~a~~~--~lp~i~~iNKiDr~~a----~~~  155 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSET--VWRQANKY--GVPRIVYVNKMDRQGA----NFL  155 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHH--TCCEEEEEECSSSTTC----CHH
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEccccccCc----cHH
Confidence            689999999999999999999999999999999999886655544  55555555  7999999999998764    334


Q ss_pred             hhhHHHHHHhcccCc--EEEeCcccC-CCchHHHHHHHHHH-cC-CCC--CC-----CccchhcccHHHHHHHHHHHhhc
Q 010548          138 EVMGPIMQQFREIET--CVECSATTM-IQVPDVFYYAQKAV-LH-PTA--PL-----FDHDEQTLKPRCVRALKRIFIIC  205 (507)
Q Consensus       138 ~~~~~~~~~~~~~~~--~~~~SA~~g-~gi~~l~~~i~~~i-~~-~~~--~~-----~~~~~~~~~~~~~~~l~~~~~~~  205 (507)
                      ....++...++....  -+++.+..+ .|+-++.   .... .. ...  ..     ............+..+.......
T Consensus       156 ~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  232 (709)
T 4fn5_A          156 RVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLI---KMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEA  232 (709)
T ss_dssp             HHHHHHHHHHCSCEEESEEEESSSTTCCEEEETT---TTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhhhcccceeeeecccCchhccceEEEEe---eeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhc
Confidence            555666666654211  122222111 1111110   0000 00 000  00     00000111112222222222222


Q ss_pred             cCC------CCCccChhhhHHHHhH----------hcCCCCCHHHHHHHHHHHHhhccCC
Q 010548          206 DHD------MDGALNDAELNEFQVK----------CFNAPLQPAEIVGVKRVVQEKQHDG  249 (507)
Q Consensus       206 d~~------~d~~l~~~el~~~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~~  249 (507)
                      |..      +++.++.+++....+.          ++++++...++..+++.+.+++|+-
T Consensus       233 d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP  292 (709)
T 4fn5_A          233 NEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAP  292 (709)
T ss_dssp             SHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCT
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCC
Confidence            221      3456788888777765          6889999999999999999999974

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.35  E-value=2.1e-12  Score=118.30  Aligned_cols=83  Identities=22%  Similarity=0.400  Sum_probs=70.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+. ..+...+....+.+|||+|++++..++  ..+++.+|++
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~~   83 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQ--RLSISKGHAF   83 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHH--HHHHHHCSEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHH--HHhhccCCEE
Confidence            4589999999999999999999999988777777775553 345566667789999999999998877  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        84 i~v~d~   89 (199)
T 2gf0_A           84 ILVFSV   89 (199)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.34  E-value=3.1e-12  Score=116.41  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=62.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++  ..+++.+|+
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   95 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEG   95 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-------------CTTCSE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHH--HHhhCcCCE
Confidence            3569999999999999999999999988877777766555 3456666667789999999999988877  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        96 ~i~v~d~  102 (190)
T 3con_A           96 FLCVFAI  102 (190)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.34  E-value=3e-12  Score=116.65  Aligned_cols=81  Identities=19%  Similarity=0.326  Sum_probs=66.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCC-CCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERP-FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      .+.+||+++|++|||||||+++|++.. +...+.+|.+  +....+..+  ..++.+|||+|++++..++  ..+++++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~~d   92 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLW--EHYYKEGQ   92 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGG--GGGGGGCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHH--HHHHhcCC
Confidence            456999999999999999999999988 5555666665  445556665  4688999999999999887  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        93 ~ii~v~d~  100 (190)
T 2h57_A           93 AIIFVIDS  100 (190)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.34  E-value=5.9e-12  Score=112.18  Aligned_cols=80  Identities=23%  Similarity=0.270  Sum_probs=65.3

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|++|||||||+++|+++.+.. +.+|.+.  ....+...  ..++.+|||+|++++..++  ..+++++|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~   77 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYW--RCYYSNTDA   77 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGG--GGGCTTCSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHH--HHHhccCCE
Confidence            345899999999999999999999988753 4455553  33444443  6788999999999999887  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        78 ii~v~d~   84 (171)
T 1upt_A           78 VIYVVDS   84 (171)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.33  E-value=5e-13  Score=128.47  Aligned_cols=89  Identities=10%  Similarity=0.029  Sum_probs=56.9

Q ss_pred             CCCcc-chhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHH
Q 010548           67 SSSLE-NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ  145 (507)
Q Consensus        67 ~G~~~-~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~  145 (507)
                      ||+.. ........+..+|+++.|+|++++.+.....  +. .    . ++|.++|+||+|+.+...    .+....+..
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l----l-~k~~iivlNK~DL~~~~~----~~~~~~~~~   72 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F----S-RKETIILLNKVDIADEKT----TKKWVEFFK   72 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C----T-TSEEEEEEECGGGSCHHH----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h----c-CCCcEEEEECccCCCHHH----HHHHHHHHH
Confidence            55432 3345678899999999999999986654321  11 1    1 789999999999975311    112222222


Q ss_pred             HhcccCcEEEeCcccCCCchHHHHH
Q 010548          146 QFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus       146 ~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      ..+.  ++ .+||+++.|++++++.
T Consensus        73 ~~g~--~v-~iSa~~~~gi~~L~~~   94 (262)
T 3cnl_A           73 KQGK--RV-ITTHKGEPRKVLLKKL   94 (262)
T ss_dssp             HTTC--CE-EECCTTSCHHHHHHHH
T ss_pred             HcCC--eE-EEECCCCcCHHHHHHH
Confidence            3332  56 9999999998887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.33  E-value=2.3e-12  Score=116.51  Aligned_cols=81  Identities=20%  Similarity=0.297  Sum_probs=65.0

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      ..+.+||+++|++|||||||+++|+++++ ..+.++.+...  ..+...  ..++.+|||+|++++..++  ..+++++|
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d   90 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSW--NTYYTNTE   90 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCGG--GGGGTTCC
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHHH--HHHhccCC
Confidence            44569999999999999999999999988 44556665443  334443  4789999999999999887  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        91 ~ii~v~D~   98 (181)
T 2h17_A           91 FVIVVVDS   98 (181)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.33  E-value=2.7e-12  Score=119.36  Aligned_cols=81  Identities=17%  Similarity=0.275  Sum_probs=65.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC-eEEEEEEecCCchhhhh-hccchhhccccc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG-NKKTLILQEIPEEGVKK-ILSNKEALASCD  499 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~-~~~~~~~~~~ad  499 (507)
                      ..+||+++|++|||||||+++|+++.+...+.+++ ..+.  .+.+++. ..++.+|||+|++++.. ++  ..+++++|
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--~~~~~~~~   80 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLL--DRFKSSAR   80 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHH--HHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHH--HHHHhhCC
Confidence            45899999999999999999999999877775443 3332  2556544 67899999999999987 55  57899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        81 ~~i~v~d~   88 (214)
T 2fh5_B           81 AVVFVVDS   88 (214)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999996

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.33  E-value=3e-12  Score=117.25  Aligned_cols=83  Identities=22%  Similarity=0.312  Sum_probs=61.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCC--CCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh-hhhhccchhhcccc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPF--SENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG-VKKILSNKEALASC  498 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~a  498 (507)
                      ..+||++||++|||||||+++|++...  ...+ ++.+.++..+.+.+++...++.+|||+|++. +..+.  ..+++.+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~--~~~~~~~   81 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH--DHCMQVG   81 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTG--GGHHHHC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHH--HhhcccC
Confidence            468999999999999999999997543  3333 3445555566777787777889999999876 44444  5788999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        82 ~~~i~v~dv   90 (192)
T 2cjw_A           82 DAYLIVYSI   90 (192)
T ss_dssp             SEEEEEEET
T ss_pred             CEEEEEEEC
Confidence            999999996

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.33  E-value=3.5e-12  Score=112.66  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=69.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++++++.+...+.++.+..+ ...+...+....+.+|||+|++++..++  ..+++.+|+++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i   79 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHH--HHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHH--HHhhccCCEEE
Confidence            47999999999999999999999988877777776554 4455666667788999999999888877  67899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 ~v~d~   84 (166)
T 2ce2_X           80 CVFAI   84 (166)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99995

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.33  E-value=5.6e-12  Score=114.31  Aligned_cols=79  Identities=24%  Similarity=0.369  Sum_probs=65.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|++++ ...+.+|.+.  ....+..+  ..++.+|||+|++++...+  ..+++++|++
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~i   89 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHR--GFKLNIWDVGGQKSLRSYW--RNYFESTDGL   89 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEET--TEEEEEEEECCSHHHHTTG--GGGCTTCSEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence            45899999999999999999999988 5566666663  34445443  5788999999999999887  6889999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        90 i~v~d~   95 (186)
T 1ksh_A           90 IWVVDS   95 (186)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.32  E-value=2e-12  Score=129.77  Aligned_cols=119  Identities=15%  Similarity=0.179  Sum_probs=83.4

Q ss_pred             CCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHhHHHHHHhc--CCCCcEEEEEe
Q 010548           56 PDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGC  123 (507)
Q Consensus        56 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~N  123 (507)
                      .+++.+.+|||+|++.++..+..++++++++|||||+++          ..++..... |...+...  ..+.|+|||+|
T Consensus       198 ~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~piILv~N  276 (362)
T 1zcb_A          198 IKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVSIILFLN  276 (362)
T ss_dssp             ETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEE
T ss_pred             eCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCCEEEEEE
Confidence            457899999999999999999999999999999999999          778888876 66666543  35799999999


Q ss_pred             cccCCCCC---------------C-ccchhhhhHHHHHHh--------cccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          124 KLDLRGDH---------------N-ATSLEEVMGPIMQQF--------REIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       124 K~Dl~~~~---------------~-~~~~~~~~~~~~~~~--------~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      |+|+..+.               . + ..++....+...|        .....+++|||+++.||.++|+++.+.+.
T Consensus       277 K~DL~~~ki~~~~l~~~fp~y~g~~~-~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          277 KTDLLEEKVQVVSIKDYFLEFEGDPH-CLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             CHHHHHHHTTTCCGGGTCTTCCSCTT-CHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhhhccccchhhcCccccCCCC-CHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            99986321               1 2 2233222222221        11236789999999999999999988763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.32  E-value=6.4e-13  Score=121.45  Aligned_cols=84  Identities=18%  Similarity=0.136  Sum_probs=63.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCC-----------CCccceeEEEEE-EcCCCeEEEEEEecCCchhhhhh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----------PTTGEQYAVNVV-DQPGGNKKTLILQEIPEEGVKKI  488 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-----------~t~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~~~~~  488 (507)
                      ...+||+++|++|||||||++. +.+.+...+.           +|.+.++....+ ...+...++.+|||+|++++..+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             ccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            4569999999999999999954 4445554433           233333332223 44556778999999999999988


Q ss_pred             ccchhhcccccEEEEEEeC
Q 010548          489 LSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       489 ~~~~~~~~~ad~vilv~D~  507 (507)
                      +  ..+++++|++++|||+
T Consensus        91 ~--~~~~~~~d~~i~v~D~  107 (198)
T 3t1o_A           91 R--KLILRGVDGIVFVADS  107 (198)
T ss_dssp             H--HHHTTTCCEEEEEEEC
T ss_pred             H--HHHHhcCCEEEEEEEC
Confidence            8  6899999999999996

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.32  E-value=3.2e-12  Score=113.18  Aligned_cols=77  Identities=22%  Similarity=0.346  Sum_probs=63.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||+++|+++++.. +.||.+  +....+..  +..++.+|||+|++++..++  ..+++++|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~i~   73 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF   73 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEEC--SSCEEEEEECCCCGGGHHHH--HHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEE--CCEEEEEEEcCCChhhHHHH--HHHhccCCEEEE
Confidence            589999999999999999999988764 456655  32333443  45789999999999998887  678999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        74 v~d~   77 (164)
T 1r8s_A           74 VVDS   77 (164)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9995

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.32  E-value=2e-12  Score=116.16  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+..+....+..+  ...+.+|||+|++++..++  ..+++.+|+
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~   81 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--DKKITFLDTPGHEAFTTMR--ARGAQVTDI   81 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--TEEEEESCCCSSSSSSCSC--CSSCCCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--CceEEEEECCCCHHHHHHH--HHHHhhCCE
Confidence            346899999999999999999999999887777766655555555555  3567899999999998877  578899999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        82 ~i~v~d~   88 (178)
T 2lkc_A           82 VILVVAA   88 (178)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.31  E-value=1.3e-11  Score=123.91  Aligned_cols=81  Identities=17%  Similarity=0.273  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCC--CCCCeeeCCccc-------------------CCceEEEEEeCCCCc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESV-PEKVPP--VHAPTRLPPDFY-------------------PDRVPVTIIDTSSSL   70 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~-~~~~~~--~~~~~t~~~~~~-------------------~~~~~~~i~Dt~G~~   70 (507)
                      ++|+|+|.||||||||+|+|++... ..+++.  ..+..... .+.                   .....+.+|||||+.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            6899999999999999999997642 122221  11221110 111                   123579999999987


Q ss_pred             cch----h---hhHHhhccCCEEEEEEeCCC
Q 010548           71 ENK----G---KLNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        71 ~~~----~---~~~~~~~~ad~il~V~D~~~   94 (507)
                      +..    .   ....+++.+|++++|+|+++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            642    1   23356899999999999986

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.31  E-value=3.5e-12  Score=117.35  Aligned_cols=79  Identities=18%  Similarity=0.250  Sum_probs=57.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++.. +.+|.+...  ..+..++  .++.+|||+|+++++.++  ..+++++|++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~--~~~~~~~d~~   96 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVW--KNYLPAINGI   96 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGG--GGGGGGCSEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHH--HHHHhcCCEE
Confidence            34799999999999999999999988753 556655433  3455553  789999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        97 i~v~D~  102 (198)
T 1f6b_A           97 VFLVDC  102 (198)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999996

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.31  E-value=7.1e-12  Score=114.43  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=64.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++.. +.+|.+..  ...+..+  ..++.+|||+|++++..++  ..+++.+|++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~~   94 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIG--NIKFTTFDLGGHIQARRLW--KDYFPEVNGI   94 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEET--TEEEEEEECCCSGGGTTSG--GGGCTTCCEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEEC--CEEEEEEECCCCHHHHHHH--HHHHhcCCEE
Confidence            34799999999999999999999988763 45555543  3455555  3789999999999998877  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        95 i~v~d~  100 (190)
T 1m2o_B           95 VFLVDA  100 (190)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999996

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.30  E-value=4.5e-12  Score=115.18  Aligned_cols=79  Identities=20%  Similarity=0.313  Sum_probs=61.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++. .+.+|.+...  ..+...  ..++.+|||+|++++..++  ..+++++|++
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~i   87 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSW--NTYYTNTEFV   87 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGG--HHHHTTCCEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHH--HHHhcCCCEE
Confidence            4589999999999999999999998887 5556665333  334443  4789999999999998887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        88 i~v~d~   93 (187)
T 1zj6_A           88 IVVVDS   93 (187)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            999996

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.30  E-value=2e-12  Score=130.77  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=89.7

Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCC----------hhhHHHHHHhHHHHHHhc--CCCCcEEEEEec
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQ----------QSTLSRLSSYWLPELRRL--EIKVPIIVAGCK  124 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~NK  124 (507)
                      +++.+.+|||+|++.++..+..++++++++|||||+++          ..+++.... |+..+...  ..+.|+|||+||
T Consensus       215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgNK  293 (402)
T 1azs_C          215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLNK  293 (402)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEEC
T ss_pred             CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEEC
Confidence            35789999999999999999999999999999999999          889999886 88777654  358999999999


Q ss_pred             ccCCCCCC---ccc-------------------------hhhhhHHHH-HHhc----------ccCcEEEeCcccCCCch
Q 010548          125 LDLRGDHN---ATS-------------------------LEEVMGPIM-QQFR----------EIETCVECSATTMIQVP  165 (507)
Q Consensus       125 ~Dl~~~~~---~~~-------------------------~~~~~~~~~-~~~~----------~~~~~~~~SA~~g~gi~  165 (507)
                      +|+...+.   +..                         ..+.+..++ .+|.          ....+++|||+++.||.
T Consensus       294 ~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~  373 (402)
T 1azs_C          294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR  373 (402)
T ss_dssp             HHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHH
T ss_pred             hhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHH
Confidence            99854211   100                         012222221 1110          11246799999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|..+.+.+.
T Consensus       374 ~vF~~v~~~I~  384 (402)
T 1azs_C          374 RVFNDCRDIIQ  384 (402)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887663

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.29  E-value=5e-12  Score=114.48  Aligned_cols=80  Identities=25%  Similarity=0.415  Sum_probs=65.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|++..+. .+.+|.+  +..+.+..+  ..++.+|||+|++++...+  ..+++.+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~   86 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQ--GFKLNVWDIGGQRKIRPYW--RSYFENTDI   86 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEET--TEEEEEEECSSCGGGHHHH--HHHHTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEEC--CEEEEEEECCCCHHHHHHH--HHHhCCCCE
Confidence            35689999999999999999999998764 3445555  334445554  5788999999999998887  688999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        87 ~i~v~d~   93 (181)
T 1fzq_A           87 LIYVIDS   93 (181)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.27  E-value=1.1e-11  Score=110.48  Aligned_cols=81  Identities=15%  Similarity=0.172  Sum_probs=59.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh------hhccchhhcc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA  496 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~~  496 (507)
                      .+||+++|++|||||||+++|++..+...+.++.+.+.....+...  ..++.+|||+|++++.      .+.  ..+++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~--~~~~~   78 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIA--RDYII   78 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHH--HHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHH--HHHHh
Confidence            4799999999999999999999987765555555555545555554  3678999999998764      232  45665


Q ss_pred             --cccEEEEEEeC
Q 010548          497 --SCDVTIFVYDR  507 (507)
Q Consensus       497 --~ad~vilv~D~  507 (507)
                        ++|++++|||+
T Consensus        79 ~~~~~~~i~v~D~   91 (165)
T 2wji_A           79 NEKPDLVVNIVDA   91 (165)
T ss_dssp             HHCCSEEEEEEET
T ss_pred             cCCCCEEEEEecC
Confidence              89999999995

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.27  E-value=6e-12  Score=118.08  Aligned_cols=152  Identities=16%  Similarity=0.096  Sum_probs=85.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC---CC-------------ee--e--CCccc--------------C
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH---AP-------------TR--L--PPDFY--------------P   56 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~---~~-------------~t--~--~~~~~--------------~   56 (507)
                      +.++|+|+|.+|||||||+++|+...+.....++.   ..             ..  +  ...+.              .
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            45899999999999999999999765433211100   00             00  0  00000              0


Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~  136 (507)
                      .+..+.++|++|......   .+-...+.++.|+|.........  . ....   .  +.|.++|+||+|+...... . 
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~---~--~~~~iiv~NK~Dl~~~~~~-~-  183 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--K-HPGI---M--KTADLIVINKIDLADAVGA-D-  183 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--T-CHHH---H--TTCSEEEEECGGGHHHHTC-C-
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--h-hhhH---h--hcCCEEEEeccccCchhHH-H-
Confidence            122566666666311110   11123455566777533211100  0 1111   1  5788999999998653222 1 


Q ss_pred             hhhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          137 EEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .+........++...+++++||++|.|++++|+.|.+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            223344444443334799999999999999999998765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.27  E-value=9.3e-12  Score=122.18  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh--------hhhhccchhh
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG--------VKKILSNKEA  494 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~  494 (507)
                      ..+|+++|+||||||||+|+|++.++..++..+++|+..+..+... +..++.+|||+|..+        +....  ..+
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~--~~~   83 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEV--YEA   83 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHH--HHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHH--HHH
Confidence            4589999999999999999999999987776666666655544433 567899999999865        33333  578


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ++.||++++|||+
T Consensus        84 l~~ad~il~VvD~   96 (301)
T 1wf3_A           84 LADVNAVVWVVDL   96 (301)
T ss_dssp             TSSCSEEEEEEET
T ss_pred             HhcCCEEEEEEEC
Confidence            8999999999996

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.26  E-value=6.7e-12  Score=114.80  Aligned_cols=80  Identities=21%  Similarity=0.329  Sum_probs=60.3

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++++.. +.||.+  +....+..  +..++.+|||+|++++..++  ..+++++|+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~   99 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLW--RHYFQNTQG   99 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTH--HHHHHTCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence            356999999999999999999999988763 445554  33344444  46789999999999998877  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       100 iilv~D~  106 (192)
T 2b6h_A          100 LIFVVDS  106 (192)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.24  E-value=9.1e-12  Score=113.29  Aligned_cols=79  Identities=23%  Similarity=0.330  Sum_probs=64.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++.. +.+|.+..  ...+..  +..++.+|||+|++++..++  ..+++++|++
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~Dt~G~~~~~~~~--~~~~~~~d~i   93 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQY--KNISFEVWDLGGQTGVRPYW--RCYFSDTDAV   93 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEE--TTEEEEEEEECCSSSSCCCC--SSSSTTCCEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEE--CCEEEEEEECCCCHhHHHHH--HHHhhcCCEE
Confidence            45899999999999999999999888754 45555532  334444  36788999999999998877  6789999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        94 i~v~d~   99 (189)
T 2x77_A           94 IYVVDS   99 (189)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            999996

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.24  E-value=6.8e-12  Score=113.26  Aligned_cols=80  Identities=23%  Similarity=0.280  Sum_probs=61.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|++|||||||+++++++++ ..+.++.+..  ...+...  ..++.+|||+|++++...+  ..+++++|+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~--~~~~~~~d~   88 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPYW--RCYYADTAA   88 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTTG--GGTTTTEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence            3568999999999999999999998887 4455666633  3344443  4788999999999988877  688999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        89 ii~v~d~   95 (183)
T 1moz_A           89 VIFVVDS   95 (183)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.88  E-value=7.6e-13  Score=122.18  Aligned_cols=84  Identities=20%  Similarity=0.357  Sum_probs=70.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..++  ..+++++|+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~d~  104 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDV  104 (204)
Confidence            4569999999999999999999999988777777766544 3344555567788899999999998887  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       105 iilv~D~  111 (204)
T 3th5_A          105 FLICFSL  111 (204)
Confidence            9999995

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.23  E-value=9.6e-12  Score=114.05  Aligned_cols=86  Identities=16%  Similarity=0.083  Sum_probs=59.4

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEE--Ec-CCCeEEEEEEecCCchhhhhhcc-chhh
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV--DQ-PGGNKKTLILQEIPEEGVKKILS-NKEA  494 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~~~i~Dt~G~~~~~~~~~-~~~~  494 (507)
                      ...+.+||+++|++|||||||++++.++... .  ++.+..+..+.+  .+ .+...++.+|||+|+++|..... ...+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            3445799999999999999999988775332 2  233322222222  22 35677899999999999875531 1378


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ++++|++++|||+
T Consensus        93 ~~~~~~~i~v~d~  105 (196)
T 3llu_A           93 FRGTGALIYVIDA  105 (196)
T ss_dssp             HHTCSEEEEEEET
T ss_pred             cccCCEEEEEEEC
Confidence            9999999999996

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.23  E-value=1.8e-11  Score=120.71  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=63.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCC---CCCCccceeEEEEEEcCCCeEEEEEEecCCchhh-----hhhccchh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-----KKILSNKE  493 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----~~~~~~~~  493 (507)
                      ..+||+++|++|||||||+++|+++.....   +.+|.+..+.  .+.+. +..++.+|||+|++++     ..++  ..
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~--~~   76 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFL-GNMTLNLWDCGGQDVFMENYFTKQK--DH   76 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEET-TTEEEEEEEECCSHHHHHHHHTTTH--HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeC-CceEEEEEECCCcHHHhhhhhhhHH--HH
Confidence            358999999999999999999998854433   3345554443  34444 4788999999999988     5555  67


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      +++++|++++|||+
T Consensus        77 ~~~~ad~vi~V~D~   90 (307)
T 3r7w_A           77 IFQMVQVLIHVFDV   90 (307)
T ss_dssp             HHTTCSEEEEEEET
T ss_pred             HhccCCEEEEEEEC
Confidence            88999999999996

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.21  E-value=8.6e-12  Score=122.29  Aligned_cols=76  Identities=13%  Similarity=0.122  Sum_probs=60.7

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCC---CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh---hccchhhcccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSE---NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK---ILSNKEALASC  498 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~a  498 (507)
                      ||+++|++|||||||++++.++-+..   .+.+|.+..+..  +  . ..++++||||+||++|..   ..  ..||++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~--~~yyr~a   73 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDS--ERLFKSV   73 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHH--HHHHTTC
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhh--hhhccCC
Confidence            68999999999999999988664432   245777776642  2  3 568899999999999964   23  6899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      +++|+|||+
T Consensus        74 ~~~IlV~Di   82 (331)
T 3r7w_B           74 GALVYVIDS   82 (331)
T ss_dssp             SEEEEECCC
T ss_pred             CEEEEEEEC
Confidence            999999996

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.21  E-value=4.2e-11  Score=118.95  Aligned_cols=84  Identities=20%  Similarity=0.361  Sum_probs=71.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+...+....+.+|||+|++++..+.  ..+++.+|+
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~d~  229 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLR--PLSYPQTDV  229 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTG--GGGCTTCSE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHH--HHhccCCCE
Confidence            3458999999999999999999999998877777776544 4455666677788899999999998877  678999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus       230 ~i~v~d~  236 (332)
T 2wkq_A          230 FLICFSL  236 (332)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            9999996

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.20  E-value=2.6e-11  Score=108.85  Aligned_cols=83  Identities=19%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccchhhc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL  495 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~  495 (507)
                      .+||+++|++|||||||+|+|++..+..... ++.+.++....+..+  ...+.+|||+|++++..      +.+...++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC--CeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            4799999999999999999999987654433 333444555566665  34578999999865321      11123578


Q ss_pred             ccccEEEEEEeC
Q 010548          496 ASCDVTIFVYDR  507 (507)
Q Consensus       496 ~~ad~vilv~D~  507 (507)
                      +.+|++++|||+
T Consensus        82 ~~ad~~i~v~D~   93 (172)
T 2gj8_A           82 EQADRVLFMVDG   93 (172)
T ss_dssp             HTCSEEEEEEET
T ss_pred             HhCCEEEEEEEC
Confidence            999999999996

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.9e-11  Score=122.71  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=77.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchh-------hhHHhhc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKG-------KLNEELK   81 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~   81 (507)
                      ..+|+|||.||||||||+|+|++.+..   ....+.+|   ....+...+.++.++||||..+...       ..-..++
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~---v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESE---AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCC---GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCc---ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            358999999999999999999987632   22233344   2223445678999999999754221       2235679


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcC---CCCcEEEEEecccCCC
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLE---IKVPIIVAGCKLDLRG  129 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~  129 (507)
                      .||++++|+|++++.  .+... +..++....   ..+|.+++.||+|...
T Consensus       149 ~ad~il~vvD~~~p~--~~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~~g  196 (376)
T 4a9a_A          149 TCNLLFIILDVNKPL--HHKQI-IEKELEGVGIRLNKTPPDILIKKKEKGG  196 (376)
T ss_dssp             HCSEEEEEEETTSHH--HHHHH-HHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred             hcCccccccccCccH--HHHHH-HHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence            999999999999873  33332 444454432   2578899999999743

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.17  E-value=4.7e-11  Score=108.29  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh------hhccchhhc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEAL  495 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~  495 (507)
                      +.+||+++|++|||||||+++|++..+...+.++.+.+.....+...  ...+.+|||+|++++.      .+.  ..++
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~   81 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIA--RDYI   81 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHH--HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHH--HHHH
Confidence            46899999999999999999999987665555666655555555554  4788999999998774      233  4555


Q ss_pred             c--cccEEEEEEeC
Q 010548          496 A--SCDVTIFVYDR  507 (507)
Q Consensus       496 ~--~ad~vilv~D~  507 (507)
                      +  .+|++++|+|+
T Consensus        82 ~~~~~~~~i~v~d~   95 (188)
T 2wjg_A           82 INEKPDLVVNIVDA   95 (188)
T ss_dssp             HHHCCSEEEEEEEG
T ss_pred             hccCCCEEEEEecc
Confidence            4  49999999995

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.17  E-value=5.9e-11  Score=116.95  Aligned_cols=86  Identities=26%  Similarity=0.259  Sum_probs=68.9

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh----------hhc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK----------KIL  489 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~  489 (507)
                      ..+.-.|+++|+||||||||+|+|++.++...+..+++++.....+...+...++.+|||+|..++.          ...
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            3456789999999999999999999999988887777777666555554337889999999985433          333


Q ss_pred             cchhhcccccEEEEEEeC
Q 010548          490 SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       490 ~~~~~~~~ad~vilv~D~  507 (507)
                        ..+++.+|++++|+|+
T Consensus        87 --~~~l~~aD~il~VvD~  102 (308)
T 3iev_A           87 --KQSLEEADVILFMIDA  102 (308)
T ss_dssp             --HHHHHHCSEEEEEEET
T ss_pred             --HHHhhcCCEEEEEEeC
Confidence              5788999999999996

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.14  E-value=4.8e-11  Score=108.86  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC----------chhhhhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS  490 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~  490 (507)
                      ...+||+++|++|||||||+|+|+++++...+.++.++.........+ .  ++.+|||+|          ++.+..+. 
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~-   96 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D--ELHFVDVPGYGFAKVSKSEREAWGRMI-   96 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T--TEEEEECCCBCCCSSCHHHHHHHHHHH-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C--cEEEEECCCCCccccCHHHHHHHHHHH-
Confidence            456899999999999999999999998655554444433333333443 2  578899999          77777766 


Q ss_pred             chhhcccc---cEEEEEEeC
Q 010548          491 NKEALASC---DVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~a---d~vilv~D~  507 (507)
                       ..+++.+   |++++|||+
T Consensus        97 -~~~~~~~~~~~~~i~v~d~  115 (195)
T 1svi_A           97 -ETYITTREELKAVVQIVDL  115 (195)
T ss_dssp             -HHHHHHCTTEEEEEEEEET
T ss_pred             -HHHHhhhhcCCEEEEEEEC
Confidence             5677776   999999995

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.13  E-value=8e-11  Score=103.63  Aligned_cols=80  Identities=21%  Similarity=0.318  Sum_probs=55.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhh-------hhhccchhhc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV-------KKILSNKEAL  495 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~  495 (507)
                      .||+++|++|||||||+++|++..+..... ++.+.......+...  ...+.+|||+|...+       ....  ..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~--~~~~   77 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKV--DRAL   77 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHH--HHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHH--HHHH
Confidence            589999999999999999999988653332 333334444445554  347889999998763       3333  4678


Q ss_pred             ccccEEEEEEeC
Q 010548          496 ASCDVTIFVYDR  507 (507)
Q Consensus       496 ~~ad~vilv~D~  507 (507)
                      +.+|++++|||+
T Consensus        78 ~~~~~~i~v~d~   89 (161)
T 2dyk_A           78 EDAEVVLFAVDG   89 (161)
T ss_dssp             TTCSEEEEEEES
T ss_pred             HhCCEEEEEEEC
Confidence            999999999995

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.12  E-value=8.6e-11  Score=117.13  Aligned_cols=106  Identities=8%  Similarity=0.021  Sum_probs=64.6

Q ss_pred             CceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccch
Q 010548           57 DRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL  136 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~  136 (507)
                      .+..+.++||+|.....   ......+|++++|+|+..+...+.+..    .+.    ..|.++|+||+|+......  .
T Consensus       146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~----~~~~ivvlNK~Dl~~~~~~--s  212 (337)
T 2qm8_A          146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF----ELADMIAVNKADDGDGERR--A  212 (337)
T ss_dssp             TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH----HHCSEEEEECCSTTCCHHH--H
T ss_pred             CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh----ccccEEEEEchhccCchhH--H
Confidence            46789999999975432   234578999999999875532221111    111    2466788899997542111  1


Q ss_pred             hhhhHHHHHHh---c-----ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          137 EEVMGPIMQQF---R-----EIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       137 ~~~~~~~~~~~---~-----~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ......+....   .     ...+++.+||+++.|++++++.|.+..
T Consensus       213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            11122222211   1     013689999999999999999998764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.11  E-value=1e-10  Score=110.87  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCC--CccceeEEEEEEcCCCeEEEEEEecCCc-----------hhhhh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAP--TTGEQYAVNVVDQPGGNKKTLILQEIPE-----------EGVKK  487 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-----------~~~~~  487 (507)
                      ...+||+++|++|||||||+|++++..+.....+  +.+.......+...  ...+.+|||+|.           +.+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4569999999999999999999999988666555  33333434444443  457889999993           33443


Q ss_pred             hccchhhcccccEEEEEEeC
Q 010548          488 ILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       488 ~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..  ..+++++|++++|+|+
T Consensus       105 ~~--~~~~~~~~~~l~v~d~  122 (239)
T 3lxx_A          105 CI--LLTSPGPHALLLVVPL  122 (239)
T ss_dssp             HH--HHTTTCCSEEEEEEET
T ss_pred             HH--HhcCCCCcEEEEEeeC
Confidence            33  3566789999999995

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.10  E-value=6.2e-11  Score=117.93  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=60.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++.+...+ +|.+..+  ..+..  +..++.+|||+|++++..++  ..+++.+|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~--~~~~l~i~Dt~G~~~~~~~~--~~~~~~ad~  235 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLW--RHYFQNTQG  235 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEE--TTEEEEEEECC-----CCSH--HHHHTTEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEec--CcEEEEEEECCCCHhHHHHH--HHHhccCCE
Confidence            45689999999999999999999999876443 4444333  23333  56789999999999999887  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +|+|||+
T Consensus       236 vilV~D~  242 (329)
T 3o47_A          236 LIFVVDS  242 (329)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.10  E-value=1.2e-11  Score=118.50  Aligned_cols=86  Identities=17%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             cCceEEEEEecCC---------CCchHHHHHHHhc---CCCCCCCCCCc-cceeEEEEE--------------EcCCCeE
Q 010548          420 ERNVFRCLLFGPQ---------NAGKSALLNSFLE---RPFSENYAPTT-GEQYAVNVV--------------DQPGGNK  472 (507)
Q Consensus       420 ~~~~~kv~ivG~~---------~vGKSsll~~l~~---~~~~~~~~~t~-~~~~~~~~~--------------~~~~~~~  472 (507)
                      ..+.+||+++|++         |||||||+++|++   ..+...+.++. +.++..+.+              ..++...
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4456999999999         9999999999999   56666666654 333322211              1344667


Q ss_pred             EEEEEe-----------------------cCCchhhhhhccchhhcc---------------------cccEEEEEEeC
Q 010548          473 KTLILQ-----------------------EIPEEGVKKILSNKEALA---------------------SCDVTIFVYDR  507 (507)
Q Consensus       473 ~~~i~D-----------------------t~G~~~~~~~~~~~~~~~---------------------~ad~vilv~D~  507 (507)
                      ++.|||                       ++|+++|.+++  ..+++                     +||++++|||+
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAE--KLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTT--CBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhh--hhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            899999                       77888888776  45666                     79999999996

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.08  E-value=7e-11  Score=110.00  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=60.2

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCC---CCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      ...+||+++|++|||||||+++|++..+...   +.++.+..+         ....+.+|||+|++++...+  ..+++.
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~--~~~~~~   78 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKL--SDYLKT   78 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHH--HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHH--HHHHHh
Confidence            3568999999999999999999999887542   333333322         45578899999999998776  567777


Q ss_pred             ----ccEEEEEEeC
Q 010548          498 ----CDVTIFVYDR  507 (507)
Q Consensus       498 ----ad~vilv~D~  507 (507)
                          +|++++|||+
T Consensus        79 ~~~~~~~~i~v~D~   92 (218)
T 1nrj_B           79 RAKFVKGLIFMVDS   92 (218)
T ss_dssp             HGGGEEEEEEEEET
T ss_pred             ccccCCEEEEEEEC
Confidence                8999999996

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.07  E-value=2.2e-10  Score=107.62  Aligned_cols=82  Identities=20%  Similarity=0.169  Sum_probs=56.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc------hh----hhhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE------EG----VKKILS  490 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------~~----~~~~~~  490 (507)
                      ...+||+++|++|||||||+|+|+++.+.....+..+..........  +...+.+|||+|+      ++    +..+  
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~--  102 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTI--  102 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHH--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHH--
Confidence            34689999999999999999999999876333233233333333333  3467899999998      43    3322  


Q ss_pred             chhhcccccEEEEEEeC
Q 010548          491 NKEALASCDVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~ad~vilv~D~  507 (507)
                       ..+++.+|++++|||+
T Consensus       103 -~~~~~~~d~~i~v~d~  118 (228)
T 2qu8_A          103 -TALAHINGVILFIIDI  118 (228)
T ss_dssp             -HHHHTSSEEEEEEEET
T ss_pred             -HHhhccccEEEEEEec
Confidence             2357889999999996

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.07  E-value=2.7e-10  Score=109.26  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=61.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc----chhhc--
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS----NKEAL--  495 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----~~~~~--  495 (507)
                      +.+||+++|.+|||||||+|+|++..+.....+..+.......+..  +...+.+|||+|...+.....    ...++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            4589999999999999999999998876444454444443333333  457899999999987664210    13454  


Q ss_pred             ccccEEEEEEeC
Q 010548          496 ASCDVTIFVYDR  507 (507)
Q Consensus       496 ~~ad~vilv~D~  507 (507)
                      ..+|++++|+|+
T Consensus        82 ~~~d~ii~V~D~   93 (258)
T 3a1s_A           82 GDADLVILVADS   93 (258)
T ss_dssp             SCCSEEEEEEET
T ss_pred             cCCCEEEEEeCC
Confidence            589999999996

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.06  E-value=1.8e-10  Score=110.35  Aligned_cols=80  Identities=19%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh----------hccchh
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK----------ILSNKE  493 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~  493 (507)
                      .||+++|.+|||||||+|+|++........++.+.+.....+...  ...+.+|||+|...+..          +.  ..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~--~~   77 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIA--AQ   77 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHH--HH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHH--HH
Confidence            389999999999999999999987655555666655655556555  34788999999977653          22  45


Q ss_pred             hc--ccccEEEEEEeC
Q 010548          494 AL--ASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~--~~ad~vilv~D~  507 (507)
                      ++  +++|++++|+|+
T Consensus        78 ~~~~~~~d~vi~VvDa   93 (256)
T 3iby_A           78 SVIDLEYDCIINVIDA   93 (256)
T ss_dssp             HHHHSCCSEEEEEEEG
T ss_pred             HHhhCCCCEEEEEeeC
Confidence            66  899999999995

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.05  E-value=1.4e-10  Score=111.92  Aligned_cols=80  Identities=20%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh------hhccchhhcc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALA  496 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~~  496 (507)
                      .+||+++|+||||||||+|+|++........+..+.+.  +...+.. ..++.+|||+|+.++.      .+.  ..+++
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~--~~~~~   77 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVA--RDYLL   77 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHH--HHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHH--HHHHh
Confidence            47999999999999999999998764433334333322  2334443 5678899999998875      233  45665


Q ss_pred             --cccEEEEEEeC
Q 010548          497 --SCDVTIFVYDR  507 (507)
Q Consensus       497 --~ad~vilv~D~  507 (507)
                        ++|++++|||+
T Consensus        78 ~~~~d~vi~V~D~   90 (272)
T 3b1v_A           78 SQRADSILNVVDA   90 (272)
T ss_dssp             TTCCSEEEEEEEG
T ss_pred             cCCCCEEEEEecC
Confidence              69999999995

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.05  E-value=5.5e-11  Score=108.37  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=55.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCC---CCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN---YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALAS  497 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  497 (507)
                      .+.+||+++|++|||||||+++|++..+...   +.++.+..+         ....+.+|||+|.+.+...+  ..+++.
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~--~~~~~~  114 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKL--SDYLKT  114 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCH--HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHH--HHHHHh
Confidence            3568999999999999999999999886541   222222222         34567889999999887666  456665


Q ss_pred             ----ccEEEEEEeC
Q 010548          498 ----CDVTIFVYDR  507 (507)
Q Consensus       498 ----ad~vilv~D~  507 (507)
                          +|++++|||+
T Consensus       115 ~~~~~~~~i~v~d~  128 (193)
T 2ged_A          115 RAKFVKGLIFMVDS  128 (193)
T ss_dssp             HGGGEEEEEEEEET
T ss_pred             hcccCCEEEEEEEC
Confidence                8999999996

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.04  E-value=3.7e-10  Score=108.38  Aligned_cols=85  Identities=21%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCC-CCCC-ccceeEEEEEEcCCCeEEEEEEecCCchhhhhhc---------
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPT-TGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL---------  489 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-~~~t-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------  489 (507)
                      ...++|+++|.+|||||||+|++++...... +.++ .+.......+..  +..++.+|||+|...+....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW--GNREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE--TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe--CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            3568999999999999999999998884433 3343 233333333333  35678999999976542111         


Q ss_pred             cchhhcccccEEEEEEeC
Q 010548          490 SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       490 ~~~~~~~~ad~vilv~D~  507 (507)
                      ....+++.+|++++|||+
T Consensus        98 ~~~~~~~~~d~il~V~d~  115 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQL  115 (260)
T ss_dssp             HHHHHTTCCSEEEEEEET
T ss_pred             HHHhcCCCCcEEEEEEeC
Confidence            012367899999999996

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.04  E-value=9.2e-11  Score=121.97  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=45.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeE-EEEEEcCCCeEEEEEEecCCchhhhhhc------cchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA-VNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEA  494 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~  494 (507)
                      ..+||+++|+||||||||+|+|++.++..+...+++++.. ...+..+  +..+.+|||+|++.+....      .+..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--TEEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            4589999999999999999999999876666555555443 3444554  4678999999997765432      23568


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ++.||++++|||+
T Consensus       310 ~~~aD~vl~VvD~  322 (476)
T 3gee_A          310 MAEADLILYLLDL  322 (476)
T ss_dssp             CSSCSEEEEEEET
T ss_pred             cccCCEEEEEEEC
Confidence            8999999999996

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.04  E-value=1.9e-10  Score=107.46  Aligned_cols=84  Identities=15%  Similarity=0.084  Sum_probs=58.8

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCC-CCCCCCCccceeEEEEEEcC-CCeEEEEEEecCC----------chhhhhh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPF-SENYAPTTGEQYAVNVVDQP-GGNKKTLILQEIP----------EEGVKKI  488 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G----------~~~~~~~  488 (507)
                      ...+||+++|.+|||||||+|+|++.++ ......++++... ...... .+...+.+|||+|          ++++..+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI-NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE-EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce-EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3468999999999999999999999874 3333333333332 222232 3567788999999          4555555


Q ss_pred             ccchhhccc---ccEEEEEEeC
Q 010548          489 LSNKEALAS---CDVTIFVYDR  507 (507)
Q Consensus       489 ~~~~~~~~~---ad~vilv~D~  507 (507)
                      .  ..+++.   +|++++|+|+
T Consensus       106 ~--~~~~~~~~~~d~vi~v~d~  125 (223)
T 4dhe_A          106 L--SSYLQTRPQLCGMILMMDA  125 (223)
T ss_dssp             H--HHHHHHCTTEEEEEEEEET
T ss_pred             H--HHHHhcCcCcCEEEEEEeC
Confidence            4  456655   8889999995

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.04  E-value=2e-10  Score=122.04  Aligned_cols=86  Identities=15%  Similarity=0.151  Sum_probs=61.9

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEE------EEc--CCCeEEEEEEecCCchhhhhhccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV------VDQ--PGGNKKTLILQEIPEEGVKKILSN  491 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~------~~~--~~~~~~~~i~Dt~G~~~~~~~~~~  491 (507)
                      ....+||+++|.+|||||||++++++..+...+.+|.+..+..+.      +..  .+...++.+|||+|++.+..+.  
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~--  115 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH--  115 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC--
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH--
Confidence            345699999999999999999999999998888888887665442      122  2346789999999999999877  


Q ss_pred             hhhcccccEEEEEEeC
Q 010548          492 KEALASCDVTIFVYDR  507 (507)
Q Consensus       492 ~~~~~~ad~vilv~D~  507 (507)
                      ..+++.+|++++|||+
T Consensus       116 ~~~l~~~d~ii~V~D~  131 (535)
T 3dpu_A          116 QFFMTRSSVYMLLLDS  131 (535)
T ss_dssp             HHHHHSSEEEEEEECG
T ss_pred             HHHccCCcEEEEEEeC
Confidence            6789999999999995

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.02  E-value=3.3e-10  Score=109.66  Aligned_cols=83  Identities=16%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc--------chhh
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS--------NKEA  494 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------~~~~  494 (507)
                      .++|+++|.+|||||||+|+|++..+...+.++.+.+.....+...  ...+.+|||+|...+.....        ...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS--SCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC--CCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            4899999999999999999999988654455555555555556654  34678899999877663210        0223


Q ss_pred             c--ccccEEEEEEeC
Q 010548          495 L--ASCDVTIFVYDR  507 (507)
Q Consensus       495 ~--~~ad~vilv~D~  507 (507)
                      +  +.+|++++|+|+
T Consensus        81 ~~~~~~d~ii~VvD~   95 (274)
T 3i8s_A           81 ILSGDADLLINVVDA   95 (274)
T ss_dssp             HHHTCCSEEEEEEEG
T ss_pred             HhhcCCCEEEEEecC
Confidence            2  799999999995

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.02  E-value=3.9e-10  Score=109.00  Aligned_cols=81  Identities=16%  Similarity=0.206  Sum_probs=62.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh------hccchhhc-
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK------ILSNKEAL-  495 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~-  495 (507)
                      .+||+++|++|||||||+|+|++..+...+.++.+.+.....+...  ...+.+|||+|+..+..      +.  ..++ 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~--~~~~~   78 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIA--RNFIL   78 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHH--HHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHH--HHhhh
Confidence            5799999999999999999999988755555666666655555554  45688999999987665      33  3455 


Q ss_pred             -ccccEEEEEEeC
Q 010548          496 -ASCDVTIFVYDR  507 (507)
Q Consensus       496 -~~ad~vilv~D~  507 (507)
                       .++|++++|+|+
T Consensus        79 ~~~~d~vi~v~D~   91 (271)
T 3k53_A           79 DGNADVIVDIVDS   91 (271)
T ss_dssp             TTCCSEEEEEEEG
T ss_pred             ccCCcEEEEEecC
Confidence             689999999995

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.00  E-value=6.4e-10  Score=106.92  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=58.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCc-cceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcc----
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTT-GEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALA----  496 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----  496 (507)
                      ..+||+++|.+|||||||+|+|++.++...+...+ +.......+..  +...+.+|||+|+..+....  ..+++    
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~--~~~~~~i~~  110 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVN--HQALELIKG  110 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEEC--HHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccch--HHHHHHHHH
Confidence            56999999999999999999999988754444333 33333333333  45688999999998776443  23332    


Q ss_pred             -----cccEEEEEEeC
Q 010548          497 -----SCDVTIFVYDR  507 (507)
Q Consensus       497 -----~ad~vilv~D~  507 (507)
                           ++|++++|+|+
T Consensus       111 ~l~~~~~~~il~V~~~  126 (262)
T 3def_A          111 FLVNRTIDVLLYVDRL  126 (262)
T ss_dssp             HTTTCEECEEEEEEES
T ss_pred             HHhcCCCCEEEEEEcC
Confidence                 78999999874

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.99  E-value=8e-10  Score=100.42  Aligned_cols=81  Identities=16%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC----------chhhhhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP----------EEGVKKILS  490 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~  490 (507)
                      ...+||+++|++|||||||+++|++..+......++.+.. ......+ .  ++.+|||+|          ++.+..+. 
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~-~~~~~~~-~--~~~i~Dt~G~~~~~~~~~~~~~~~~~~-   95 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRS-INFYLVN-S--KYYFVDLPGYGYAKVSKKERMLWKRLV-   95 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCC-EEEEEET-T--TEEEEECCCBSSSCCCHHHHHHHHHHH-
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccC-eEEEEEC-C--cEEEEECCCCccccCChhhHHHHHHHH-
Confidence            4568999999999999999999999986554444443333 3333333 2  467899999          66677666 


Q ss_pred             chhhcccc---cEEEEEEeC
Q 010548          491 NKEALASC---DVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~a---d~vilv~D~  507 (507)
                       ..+++.+   |++++|+|+
T Consensus        96 -~~~~~~~~~~~~vi~v~d~  114 (195)
T 3pqc_A           96 -EDYFKNRWSLQMVFLLVDG  114 (195)
T ss_dssp             -HHHHHHCTTEEEEEEEEET
T ss_pred             -HHHHhcCcCceEEEEEecC
Confidence             5666665   999999995

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.99  E-value=5.5e-10  Score=109.63  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCch-hhhh------hccchhhc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-GVKK------ILSNKEAL  495 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~------~~~~~~~~  495 (507)
                      ..+|+++|+||||||||+|++++.++...+..+++++.....+... +..++.+|||+|.. +...      ......++
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            3589999999999999999999998876665555555444333333 56688899999987 3211      11125678


Q ss_pred             ccccEEEEEEeC
Q 010548          496 ASCDVTIFVYDR  507 (507)
Q Consensus       496 ~~ad~vilv~D~  507 (507)
                      +.+|++++|+|+
T Consensus        87 ~~~D~vl~Vvd~   98 (301)
T 1ega_A           87 GDVELVIFVVEG   98 (301)
T ss_dssp             CCEEEEEEEEET
T ss_pred             hcCCEEEEEEeC
Confidence            999999999995

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.96  E-value=3.1e-10  Score=102.87  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=54.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCC-----------chhhhhhccch
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP-----------EEGVKKILSNK  492 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G-----------~~~~~~~~~~~  492 (507)
                      +||+++|++|||||||+++|++..+...+.++.+...  ..+...    ++.+|||+|           ++++....  .
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~   73 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEI--V   73 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHH--H
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHH--H
Confidence            6999999999999999999999998776666554332  222222    578899999           67777666  4


Q ss_pred             hhccc-cc---EEEEEEe
Q 010548          493 EALAS-CD---VTIFVYD  506 (507)
Q Consensus       493 ~~~~~-ad---~vilv~D  506 (507)
                      .+++. ++   +++.|.|
T Consensus        74 ~~~~~~~~~~~~v~~v~d   91 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVD   91 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEE
T ss_pred             HHHHhhhccCCEEEEEEc
Confidence            56665 54   5555555

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.95  E-value=2.1e-10  Score=119.35  Aligned_cols=84  Identities=18%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce-eEEEEEEcCCCeEEEEEEecCCch-hhhhh------ccchh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ-YAVNVVDQPGGNKKTLILQEIPEE-GVKKI------LSNKE  493 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~------~~~~~  493 (507)
                      ..+||+++|.||||||||+|+|++.++..+.+.+++|+ .....+.++  +..+.+|||+|.+ .+...      ..+..
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            34899999999999999999999998766665555444 334455554  4578999999997 54321      12257


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      +++.||++++|||+
T Consensus       320 ~~~~aD~vl~VvD~  333 (482)
T 1xzp_A          320 EIEKADIVLFVLDA  333 (482)
T ss_dssp             HHHHCSEEEEEEET
T ss_pred             HhhcccEEEEEecC
Confidence            88999999999995

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.93  E-value=1.7e-09  Score=104.46  Aligned_cols=86  Identities=19%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccc-----hh--
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSN-----KE--  493 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-----~~--  493 (507)
                      ...+||+++|.+|||||||+|+|++..+...+...+++..... .....+..++.+|||+|...+..+...     ..  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM-VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEE-EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEE-EEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            3469999999999999999999999987655544333332222 222335678999999998766532210     01  


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      ..+.+|++++|||+
T Consensus       116 ~~~~~d~il~v~~~  129 (270)
T 1h65_A          116 LDKTIDVLLYVDRL  129 (270)
T ss_dssp             TTCEECEEEEEEES
T ss_pred             hcCCCCEEEEEEeC
Confidence            23579999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.91  E-value=5e-10  Score=109.47  Aligned_cols=90  Identities=19%  Similarity=0.253  Sum_probs=57.5

Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-Cc
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ET  152 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~  152 (507)
                      .+.+..+..+|.+++|+|+.++..-.+....++......  ++|.++|.||+|+.+...   ..+....+.+.|... .+
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~g~~  152 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNIGYD  152 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHHTCC
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh---hHHHHHHHHHHHHhCCCe
Confidence            344567899999999999997754443333355444444  799999999999976421   001123333333110 26


Q ss_pred             EEEeCcccCCCchHHH
Q 010548          153 CVECSATTMIQVPDVF  168 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~  168 (507)
                      ++.+||+++.|+++|+
T Consensus       153 v~~~sa~~~~g~~~L~  168 (307)
T 1t9h_A          153 VYLTSSKDQDSLADII  168 (307)
T ss_dssp             EEECCHHHHTTCTTTG
T ss_pred             EEEEecCCCCCHHHHH
Confidence            8999999988876543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.88  E-value=2.9e-10  Score=117.80  Aligned_cols=84  Identities=14%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCcccee-EEEEEEcCCCeEEEEEEecCCchhhhhhc------cchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY-AVNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEA  494 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~  494 (507)
                      ..+||+++|+||||||||+|+|++.++..+...+++++. ....+..+  +..+.+|||+|.+.+....      ++..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            458999999999999999999999887666654444433 22334444  4678899999986654322      23457


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ++.+|++++|||+
T Consensus       301 ~~~aD~vl~VvD~  313 (462)
T 3geh_A          301 ANTADLVLLTIDA  313 (462)
T ss_dssp             CCSCSEEEEEEET
T ss_pred             hhcCCEEEEEecc
Confidence            8999999999995

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.87  E-value=1.6e-09  Score=108.00  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCe---------------EEEEEEecCCchhhhh-
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN---------------KKTLILQEIPEEGVKK-  487 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~-  487 (507)
                      +||++||.||||||||+|++++........|..|.......+.+++..               ..+.+|||+|+.++.+ 
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            689999999999999999999987433222322222222234444321               4789999999977532 


Q ss_pred             ---hc-cchhhcccccEEEEEEeC
Q 010548          488 ---IL-SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       488 ---~~-~~~~~~~~ad~vilv~D~  507 (507)
                         +. ....++++||++++|+|+
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~  106 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRC  106 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEec
Confidence               21 113468999999999996

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.85  E-value=4.8e-09  Score=108.32  Aligned_cols=83  Identities=12%  Similarity=0.127  Sum_probs=61.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCC-------------------------------CCCccceeEEEEEEcCC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-------------------------------APTTGEQYAVNVVDQPG  469 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~  469 (507)
                      ...++|+++|.+|+|||||+++|++.......                               ....|.+.....+..  
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~--   92 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET--   92 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence            45689999999999999999999765322111                               122333333333333  


Q ss_pred             CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +..++.+|||+|+++|....  ..+++.||++++|+|+
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~--~~~~~~aD~~ilVVDa  128 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNM--IGGASQADLAVLVISA  128 (439)
T ss_pred             CCeEEEEEECCChHHHHHHH--HhhHhhCCEEEEEEEC
Confidence            45689999999999998776  6788999999999996

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.85  E-value=2.5e-09  Score=107.70  Aligned_cols=88  Identities=10%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC-----cccC---------------CceEEEEEeCCCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP-----DFYP---------------DRVPVTIIDTSSS   69 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~-----~~~~---------------~~~~~~i~Dt~G~   69 (507)
                      ...++|+|+|.+|||||||+|+|++..+...   ..+.+|+..     .+..               ....+.+|||||+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~---~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl   96 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAE---NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL   96 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccc---CCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence            4468999999999999999999998764221   111122111     1111               0235999999998


Q ss_pred             ccchh-------hhHHhhccCCEEEEEEeCCChhhHHH
Q 010548           70 LENKG-------KLNEELKRADAVVLTYACNQQSTLSR  100 (507)
Q Consensus        70 ~~~~~-------~~~~~~~~ad~il~V~D~~~~~s~~~  100 (507)
                      .....       ....+++.+|++++|+|+++..++.+
T Consensus        97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~  134 (396)
T 2ohf_A           97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH  134 (396)
T ss_dssp             ----------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred             ccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence            76443       34578899999999999987655544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.84  E-value=2.9e-08  Score=100.22  Aligned_cols=85  Identities=14%  Similarity=0.189  Sum_probs=55.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC-C-CCCCCCC-CCeeeCCcccC------------C---ceEEEEEeCCCCcc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESV-P-EKVPPVH-APTRLPPDFYP------------D---RVPVTIIDTSSSLE   71 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~-~-~~~~~~~-~~~t~~~~~~~------------~---~~~~~i~Dt~G~~~   71 (507)
                      .+..+|+|+|++|||||||+|+|++... . .++|.+. ....-...+..            .   +..+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4468999999999999999999999763 1 2233211 11110011111            1   14689999999653


Q ss_pred             c-------hhhhHHhhccCCEEEEEEeCCC
Q 010548           72 N-------KGKLNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        72 ~-------~~~~~~~~~~ad~il~V~D~~~   94 (507)
                      .       .......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2       2234567899999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.84  E-value=2.1e-09  Score=97.54  Aligned_cols=106  Identities=8%  Similarity=0.014  Sum_probs=66.7

Q ss_pred             CCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhH---HHHHHhc--CCCCcEEEEEecc-cCCCCCCccchhhhh
Q 010548           67 SSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYW---LPELRRL--EIKVPIIVAGCKL-DLRGDHNATSLEEVM  140 (507)
Q Consensus        67 ~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~---~~~l~~~--~~~~piilv~NK~-Dl~~~~~~~~~~~~~  140 (507)
                      +|+...+.+|+.|++++|++|||+|++|....+ ....+   ...+...  ..+.|++|++||. |++..-..   .+..
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~---~EI~  185 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA  185 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH---HHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH---HHHH
Confidence            477888999999999999999999999885443 22213   2333332  1478999999995 77654222   2222


Q ss_pred             HHHHH-HhcccCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       141 ~~~~~-~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ..+.. .......+..|||++|+|+.+-++||.+.+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            22111 1122235799999999999999999987654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.84  E-value=2.2e-09  Score=108.15  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC---------------eEEEEEEecCCchhhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGVK  486 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~  486 (507)
                      ..++|++||.||||||||+|++++.++.....|..|.......+.+++.               ...+.+|||+|..+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            3479999999999999999999998774444444444444555555532               2358899999987754


Q ss_pred             h----hc-cchhhcccccEEEEEEeC
Q 010548          487 K----IL-SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       487 ~----~~-~~~~~~~~ad~vilv~D~  507 (507)
                      +    +. ....++++||++++|+|+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~  126 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRA  126 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEec
Confidence            3    10 115688999999999995

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.80  E-value=3.7e-09  Score=110.63  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCC-------------------------------CCCCccceeEEEEEEcCC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------------------------------YAPTTGEQYAVNVVDQPG  469 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~  469 (507)
                      ...+||+++|.+|+|||||+++|++......                               .....+.+..  ...+..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~--~~~~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSIC--TSHFST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCC--EEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEee--eEEEec
Confidence            4569999999999999999999986521111                               0111222222  222333


Q ss_pred             CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +..++.||||+|+++|....  ..+++.||++++|||+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~--~~~~~~aD~~llVvDa  144 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNA--IMGISQADMAILCVDC  144 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHH--HHHHTTCSEEEEEEEC
T ss_pred             CCceEEEEECCCcHHHHHHH--HHhhhhCCEEEEEEEC
Confidence            56789999999999998776  6889999999999996

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.79  E-value=1.5e-09  Score=110.89  Aligned_cols=86  Identities=15%  Similarity=0.136  Sum_probs=58.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCC-CCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc-----chhh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS-----NKEA  494 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~  494 (507)
                      ...+||+++|.+|+|||||+|+|++.++...+. +..+++.....+... +..++.+|||+|+..+..+..     +..+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            346899999999999999999999998855443 333444445556665 334788999999987765421     2457


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ++++|++++|||+
T Consensus       111 l~~aD~vllVvD~  123 (423)
T 3qq5_A          111 FYRADCGILVTDS  123 (423)
T ss_dssp             HTSCSEEEEECSS
T ss_pred             HhcCCEEEEEEeC
Confidence            8999999999996

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=98.78  E-value=2.7e-08  Score=87.91  Aligned_cols=138  Identities=17%  Similarity=0.274  Sum_probs=106.5

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      +.+.....++++|..+|.+.+|.++.+|+....+.+ +. .++..++..+....         ++.|+++.|+.+.....
T Consensus        19 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~l~~~~---------dg~i~~~eF~~~~~~~~   88 (166)
T 2mys_B           19 FDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAM-GRLNVKNEELDAMIKEA---------SGPINFTVFLTMFGEKL   88 (166)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCCHHHHHHHHHHC---------CCCcCHHHHHHHHHHHh
Confidence            455667889999999999999999999999988775 44 67777777666532         67899999999866432


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--  346 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--  346 (507)
                      ...                                         ...+.++.+|+.||.|++|.|+.+|+..++....  
T Consensus        89 ~~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~  127 (166)
T 2mys_B           89 KGA-----------------------------------------DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGR  127 (166)
T ss_pred             ccC-----------------------------------------CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCC
Confidence            110                                         1235788999999999999999999999998752  


Q ss_pred             CCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          347 ESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       347 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ..+.....+...++.|.+|.|++++|+.++.-
T Consensus       128 ~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~~  159 (166)
T 2mys_B          128 FTPEEIKNMWAAFPPDVAGNVDYKNICYVITH  159 (166)
T ss_pred             CCHHHHHHHHHhcCCCCCCeEeHHHHHHHHHh
Confidence            22233344556678899999999999998754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.78  E-value=9.3e-09  Score=103.32  Aligned_cols=79  Identities=16%  Similarity=0.137  Sum_probs=53.1

Q ss_pred             EE-EEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCc---------hhhhhhccchh
Q 010548          424 FR-CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE---------EGVKKILSNKE  493 (507)
Q Consensus       424 ~k-v~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------~~~~~~~~~~~  493 (507)
                      ++ |+++|.+|||||||+|++++..+.....+..|.+.....+.++|  ..+.+|||+|.         +.|.+.   ..
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t---l~  253 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT---LS  253 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH---HH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH---HH
Confidence            45 99999999999999999999886433333333344455666664  56789999996         223333   35


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      .++.||++++|+|+
T Consensus       254 ~~~~aD~il~VvD~  267 (364)
T 2qtf_A          254 EAKYSDALILVIDS  267 (364)
T ss_dssp             GGGGSSEEEEEEET
T ss_pred             HHHhCCEEEEEEEC
Confidence            68899999999995

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.77  E-value=7e-09  Score=111.22  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCC-------------------------------CCccceeEEEEEEcCC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-------------------------------PTTGEQYAVNVVDQPG  469 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-------------------------------~t~~~~~~~~~~~~~~  469 (507)
                      ...+||+++|.+|||||||+++|++........                               +.++.+.....+..  
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~--  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence            346899999999999999999999775433221                               11222222222222  


Q ss_pred             CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +..++.||||+|+++|....  ..+++.||++|+|||+
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~--~~~~~~aD~~llVVDa  278 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNA--IMGISQADMAILCVDC  278 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHH--TTTSSCCSEEEEEEEC
T ss_pred             CCceEEEEECCCCcccHHHH--HHHHhhcCceEEEEEC
Confidence            45688999999999988776  6789999999999996

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.77  E-value=3e-08  Score=98.73  Aligned_cols=83  Identities=19%  Similarity=0.206  Sum_probs=52.3

Q ss_pred             hhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-CcEEEe
Q 010548           79 ELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVEC  156 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  156 (507)
                      .+.++|.+++|... ++. +...+. .++-.....  ++|.+||+||+|+.+...    .+....+...|... .+++.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~-r~L~~a~~~--~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~~G~~v~~~  198 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIID-RYLVGCETL--QVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRNIGYRVLMV  198 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHH-HHHHHHHHH--TCEEEEEEECGGGCCHHH----HHHHHHHHHHHHTTTCCEEEC
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHH-HHHHHHHhc--CCCEEEEEECccCCCchh----HHHHHHHHHHHHhCCCcEEEE
Confidence            36889999988665 453 333333 355444445  788999999999976311    01123333333221 268999


Q ss_pred             CcccCCCchHHHH
Q 010548          157 SATTMIQVPDVFY  169 (507)
Q Consensus       157 SA~~g~gi~~l~~  169 (507)
                      ||+++.|++++..
T Consensus       199 Sa~~~~gl~~L~~  211 (358)
T 2rcn_A          199 SSHTQDGLKPLEE  211 (358)
T ss_dssp             BTTTTBTHHHHHH
T ss_pred             ecCCCcCHHHHHH
Confidence            9999999877553

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=98.76  E-value=1.7e-08  Score=87.15  Aligned_cols=137  Identities=16%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (507)
Q Consensus       193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~  272 (507)
                      +..+.++++|..+|.+.+|.++.+|+....+.+ +...+..+++.+...+.   +  ..++.|+++.|+.++......  
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~d---~--~~~g~i~~~eF~~~~~~~~~~--   74 (143)
T 2obh_A            3 EQKQEIREAFDLFDADGTGTIDVKELKVAMRAL-GFEPKKEEIKKMISEID---K--EGTGKMNFGDFLTVMTQKMSE--   74 (143)
T ss_dssp             HHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHT---T--TCCSEEEHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhC---C--CCCCeeeHHHHHHHHHHHhcc--
Confidence            446678999999999999999999999888764 66778888777765542   2  235689999999886533210  


Q ss_pred             ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCC
Q 010548          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPW  350 (507)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~  350 (507)
                                                             ....+-++..|+.||.|++|.|+.+|+..++.....  .+.
T Consensus        75 ---------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~  115 (143)
T 2obh_A           75 ---------------------------------------KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDE  115 (143)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHH
T ss_pred             ---------------------------------------ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH
Confidence                                                   112356789999999999999999999999986532  223


Q ss_pred             CCCccccccccCCCCccchHhHHhhh
Q 010548          351 DEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      ....+...++.|.+|.|++++|+.++
T Consensus       116 ~~~~~~~~~D~d~dG~I~~~eF~~~~  141 (143)
T 2obh_A          116 ELQEMIDEADRDGDGEVSEQEFLRIM  141 (143)
T ss_dssp             HHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            33445566788999999999999865

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.75  E-value=2.2e-10  Score=115.65  Aligned_cols=145  Identities=18%  Similarity=0.096  Sum_probs=83.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh-------hHHhh-
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESV---PEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK-------LNEEL-   80 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~-   80 (507)
                      ..+|+++|.+|||||||+|+|++...   .....+..+++|.......-+..+.++||||.......       ....+ 
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~  241 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT  241 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence            35799999999999999999998610   01112223333321111111123799999997533211       11233 


Q ss_pred             --ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           81 --KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        81 --~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                        +..+.++++++.........+.  .++.+..  .+.|+++++||+|......   .+.....+.+.++.  .+.+.++
T Consensus       242 ~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~~--~~~~~~~v~~k~d~~~~~~---~~~~~~~~~~~~g~--~l~p~~~  312 (369)
T 3ec1_A          242 PKREIHPRVYQLNEGQTLFFGGLA--RLDYIKG--GRRSFVCYMANELTVHRTK---LEKADSLYANQLGE--LLSPPSK  312 (369)
T ss_dssp             CSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEEE---GGGHHHHHHHHBTT--TBCSSCG
T ss_pred             cccccCceEEEEcCCceEEECCEE--EEEEccC--CCceEEEEecCCccccccc---HHHHHHHHHHhcCC--ccCCCCc
Confidence              7789999999974321111111  1112222  2689999999999875432   23445566666664  4566666


Q ss_pred             ccCCCch
Q 010548          159 TTMIQVP  165 (507)
Q Consensus       159 ~~g~gi~  165 (507)
                      ....++.
T Consensus       313 ~~~~~~~  319 (369)
T 3ec1_A          313 RYAAEFP  319 (369)
T ss_dssp             GGTTTCC
T ss_pred             hhhhhcc
Confidence            6655553

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=98.75  E-value=3.7e-08  Score=86.27  Aligned_cols=143  Identities=16%  Similarity=0.191  Sum_probs=112.3

Q ss_pred             hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      ..+.+.....+.++|..+|.+.+|.++.+|+...... .+..++..+++.+.+.+..     ..++.|+++.|+.+....
T Consensus        15 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~-----~~~g~i~~~eF~~~~~~~   88 (161)
T 3fwb_A           15 SELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKA-LGFELPKREILDLIDEYDS-----EGRHLMKYDDFYIVMGEK   88 (161)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT-----TSSSCEEHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCc-----CCCCeEeHHHHHHHHHHH
Confidence            3466778889999999999999999999999998887 4778888888877776632     236689999999987644


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                      ....                                         ...+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus        89 ~~~~-----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~  127 (161)
T 3fwb_A           89 ILKR-----------------------------------------DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGE  127 (161)
T ss_dssp             HHTC-----------------------------------------CHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC
T ss_pred             HhcC-----------------------------------------CcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCC
Confidence            3221                                         12466889999999999999999999999986532


Q ss_pred             --CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                        .+.....+...++.+.+|.|++++|+.++.
T Consensus       128 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~  159 (161)
T 3fwb_A          128 TLTDEELRAMIEEFDLDGDGEINENEFIAICT  159 (161)
T ss_dssp             CCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence              223334455667889999999999998764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.74  E-value=8.8e-09  Score=104.68  Aligned_cols=83  Identities=16%  Similarity=0.035  Sum_probs=45.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce-eEEEE--EE-------------------cCC-CeEEEEEEecC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ-YAVNV--VD-------------------QPG-GNKKTLILQEI  480 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~-~~~~~--~~-------------------~~~-~~~~~~i~Dt~  480 (507)
                      +||+++|.||||||||+|++++.+ ..++..+++|. .....  +.                   +.+ ...++.+|||+
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            589999999999999999999887 43333222222 11111  11                   121 13678999999


Q ss_pred             Cchhh----hhhc-cchhhcccccEEEEEEeC
Q 010548          481 PEEGV----KKIL-SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       481 G~~~~----~~~~-~~~~~~~~ad~vilv~D~  507 (507)
                      |..+.    ..+. ....+++.||++++|+|+
T Consensus        80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~  111 (397)
T 1wxq_A           80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDA  111 (397)
T ss_dssp             ---------------CCCSSTTCSEEEEEEET
T ss_pred             CcccchhhhhhHHHHHHHHHhcCCEEEEEEec
Confidence            98542    2121 113567999999999996

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.73  E-value=4.6e-10  Score=117.87  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      ..+|+++|.+|+|||||+++|.+.++...+.++.|.++....+..+ +..++.+|||+|++.|...+  ..+++.+|+++
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~--~~~~~~aD~vI   80 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMR--ARGTQVTDIVI   80 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSB--BSSSBSBSSCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHH--HHHHccCCEEE
Confidence            4689999999999999999999888776666665554443334443 34468899999999999887  67889999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        81 LVVDa   85 (537)
T 3izy_P           81 LVVAA   85 (537)
T ss_dssp             EECBS
T ss_pred             EEEEC
Confidence            99996

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.72  E-value=2.7e-08  Score=96.16  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=41.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCC--------CCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~  482 (507)
                      ..++|+++|.+|||||||+|++++.+.....        .+|.+.......+...+...++.+|||+|.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~   75 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF   75 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence            4689999999999999999998876655443        345555555444545555568999999997

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=98.72  E-value=1.4e-08  Score=87.31  Aligned_cols=135  Identities=15%  Similarity=0.259  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ++..+.++++|..+|.+.+|.++.+|+....+.+ +...+..++..+...         .++.|+++.|+.+....... 
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~---------~~g~i~~~eF~~~~~~~~~~-   71 (143)
T 3j04_B            3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASM-GKNPTDEYLEGMMSE---------APGPINFTMFLTMFGEKLNG-   71 (143)
T ss_dssp             HHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHT-SCCCCHHHHHTTTTT---------SSSCCCHHHHHHHHHHTTTS-
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHh---------CCCCcCHHHHHHHHHHHhcc-
Confidence            4556788999999999999999999999988774 556777666555443         46799999999886532110 


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CC
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SP  349 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p  349 (507)
                                                              ....+.++.+|+.||.|++|.|+.+|+..++.....  .+
T Consensus        72 ----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~  111 (143)
T 3j04_B           72 ----------------------------------------TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTD  111 (143)
T ss_dssp             ----------------------------------------SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCH
T ss_pred             ----------------------------------------CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCH
Confidence                                                    011367889999999999999999999999987532  22


Q ss_pred             CCCCccccccccCCCCccchHhHHhhhh
Q 010548          350 WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .....+...++.|.+|.|++++|+.++.
T Consensus       112 ~~~~~~~~~~D~d~dg~i~~~eF~~~~~  139 (143)
T 3j04_B          112 EEVDEMYREAPIDKKGNFNYVEFTRILK  139 (143)
T ss_dssp             HHHHHHHHHTTCCSSSCCCSTHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCcHHHHHHHHh
Confidence            2234455667889999999999998764

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=98.70  E-value=1.3e-08  Score=101.95  Aligned_cols=146  Identities=21%  Similarity=0.322  Sum_probs=111.8

Q ss_pred             CccchhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHH
Q 010548          183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF  262 (507)
Q Consensus       183 ~~~~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~  262 (507)
                      +.+....+.++....++++|..+|.+.+|.++.+|+..+++. ++..++..+++.+.+.+..     ..++.|+++.|+.
T Consensus       289 wePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrs-LG~~~TeeEI~~Lf~~~D~-----DgDG~IdFeEFl~  362 (440)
T 3u0k_A          289 WEPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDA-----DGDGTIDFPEFLI  362 (440)
T ss_dssp             ECCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHCS-----SCSSSEEHHHHHH
T ss_pred             hHhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHH-cCCCCCHHHHHHHHHHhCC-----CCCCcCcHHHHHH
Confidence            345666788899999999999999999999999999998876 4778889888888776632     2367899999998


Q ss_pred             HHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhh
Q 010548          263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF  342 (507)
Q Consensus       263 l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f  342 (507)
                      +....+..                                         ....+-|+..|+.||.|++|.|+.+||.+++
T Consensus       363 lms~~lk~-----------------------------------------~d~eeeLreAFk~fDkDgdG~IS~eELr~vL  401 (440)
T 3u0k_A          363 MMARKMKD-----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVM  401 (440)
T ss_dssp             HHHTC-----------------------------------------------CHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred             HHHHHhcC-----------------------------------------CChHHHHHHHHHHHCCCCcCcCCHHHHHHHH
Confidence            75421100                                         0012467889999999999999999999999


Q ss_pred             ccCCC--CCCCCCccccccccCCCCccchHhHHhh
Q 010548          343 LTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       343 ~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .....  .+.....+...++.|.+|.|++++|+.+
T Consensus       402 ~~lGe~LSdeEIdeLfke~D~DgDGkIsyeEFvkm  436 (440)
T 3u0k_A          402 TNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM  436 (440)
T ss_dssp             HHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            86422  2222334556678899999999999874

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=98.70  E-value=3.8e-08  Score=87.09  Aligned_cols=144  Identities=15%  Similarity=0.164  Sum_probs=111.2

Q ss_pred             hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      ..+.+.....+.++|..+|.+.+|.++.+|+....... +...+..++..+...+.     ...++.|+++.|+.+....
T Consensus        20 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d-----~~~~g~i~~~eF~~~~~~~   93 (169)
T 3qrx_A           20 VGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL-GFEPKKEEIKKMISEID-----KDGSGTIDFEEFLTMMTAK   93 (169)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHT-SCCCCHHHHHHHHHHHC-----SSSSSSEEHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhc-----CCCCCcCCHHHHHHHHHHH
Confidence            34566778899999999999999999999999888654 67788888887777662     2246789999999987643


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                      ...                                         ....+.++.+|+.+|.|++|.|+.+|+..++.....
T Consensus        94 ~~~-----------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~  132 (169)
T 3qrx_A           94 MGE-----------------------------------------RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGE  132 (169)
T ss_dssp             HHH-----------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTC
T ss_pred             hcc-----------------------------------------cCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCC
Confidence            311                                         123567889999999999999999999999987532


Q ss_pred             --CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                        .+.....+...++.|.+|.|++++|+..+.-
T Consensus       133 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  165 (169)
T 3qrx_A          133 NLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK  165 (169)
T ss_dssp             CCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence              2222334556678899999999999997753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.70  E-value=3.4e-08  Score=102.89  Aligned_cols=151  Identities=14%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh------cCCCCCC-CCCC----------------CCCeeeCCc-------------c
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAA------TESVPEK-VPPV----------------HAPTRLPPD-------------F   54 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~------~~~~~~~-~~~~----------------~~~~t~~~~-------------~   54 (507)
                      +...|+|+|.+||||||++++|.      +.+.... ..+.                .+.+.....             +
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      4431000 0000                000000000             0


Q ss_pred             cCCceEEEEEeCCCCccch-hhhH---Hh--hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcE-EEEEecccC
Q 010548           55 YPDRVPVTIIDTSSSLENK-GKLN---EE--LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPI-IVAGCKLDL  127 (507)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~-~~~~---~~--~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl  127 (507)
                      ...++.+.|+||||..... ....   ..  ...+|.+++|+|+........    ....+..   .+|+ ++|.||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence            1156789999999976422 1111   11  237899999999987643221    2233333   2575 899999998


Q ss_pred             CCCCCccchhhhhHHHHHHhcc----------------cCcEEEeCcccCCC-chHHHHHHHHH
Q 010548          128 RGDHNATSLEEVMGPIMQQFRE----------------IETCVECSATTMIQ-VPDVFYYAQKA  174 (507)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~SA~~g~g-i~~l~~~i~~~  174 (507)
                      ......      ...+...++.                ..+.+.+|+.+|.| +.+|++.+.+.
T Consensus       253 ~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            743221      1112222221                11335589999999 99999988765

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=98.69  E-value=5.2e-08  Score=85.39  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=111.4

Q ss_pred             chhcccHHHHHHHHHHHhhccCCC-CCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHH
Q 010548          186 DEQTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (507)
Q Consensus       186 ~~~~~~~~~~~~l~~~~~~~d~~~-d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~  264 (507)
                      ....+.+...+.+++.|..+|.+. +|.++.+|+....+.. +...+..+++.+.+.+..     ..++.|+++.|+.+.
T Consensus         8 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~-----~~~g~i~~~eF~~~~   81 (161)
T 1dtl_A            8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRML-GQNPTPEELQEMIDEVDE-----DGSGTVDFDEFLVMM   81 (161)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCT-----TSSSSBCHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHH
Confidence            334456777888999999999999 9999999999988764 667788888777766532     246789999999987


Q ss_pred             HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc
Q 010548          265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (507)
Q Consensus       265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~  344 (507)
                      .......                                      ......+-++.+|+.+|.|++|.|+.+|+..++..
T Consensus        82 ~~~~~~~--------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~  123 (161)
T 1dtl_A           82 VRSMKDD--------------------------------------SKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQA  123 (161)
T ss_dssp             HHHHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTT
T ss_pred             HHHhccc--------------------------------------ccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            6554100                                      01224566899999999999999999999999987


Q ss_pred             CCC--CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          345 APE--SPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       345 ~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ...  .+.....+...++.|.+|.|++++|+..+..
T Consensus       124 ~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  159 (161)
T 1dtl_A          124 TGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG  159 (161)
T ss_dssp             C--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred             hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence            532  2222233455567899999999999988753

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=98.68  E-value=3.6e-08  Score=86.47  Aligned_cols=139  Identities=19%  Similarity=0.252  Sum_probs=103.3

Q ss_pred             chhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          186 DEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       186 ~~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ++..+.++-.+.++++|..+|.+.+|.++..|+....+. ++...+..++..+...         .++.|+++.|+.++.
T Consensus         6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~-lg~~~~~~~~~~~~~~---------~~~~i~f~ef~~~~~   75 (153)
T 3i5g_B            6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS-LGRVPPDDELNAMLKE---------CPGQLNFTAFLTLFG   75 (153)
T ss_dssp             -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHH-TTSCCCHHHHHHHHHT---------SSSCCCSHHHHHTTT
T ss_pred             cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH-cCCCccHHHHHHHHHh---------ccCCccHHHHHHHHH
Confidence            345677888899999999999999999999999988876 5666777776655432         245699999988743


Q ss_pred             HHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC
Q 010548          266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (507)
Q Consensus       266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~  345 (507)
                      ....                                   .      ....+-|+..|+.||+|++|.|+.+||..++...
T Consensus        76 ~~~~-----------------------------------~------~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~  114 (153)
T 3i5g_B           76 EKVS-----------------------------------G------TDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENM  114 (153)
T ss_dssp             TTTT-----------------------------------T------CCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSS
T ss_pred             hhhc-----------------------------------c------cccHHHHHHHHhccccCCCCeEeHHHHHHHHHHc
Confidence            1110                                   0      0013578999999999999999999999999875


Q ss_pred             CC--CCCCCCccccccccCCCCccchHhHHhhh
Q 010548          346 PE--SPWDEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       346 p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      ..  .+.....+...++.| +|.|++++|+.+-
T Consensus       115 g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m  146 (153)
T 3i5g_B          115 GDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIK  146 (153)
T ss_dssp             SSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHh
Confidence            32  222234455667778 8999999999753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.68  E-value=3.3e-08  Score=96.53  Aligned_cols=28  Identities=36%  Similarity=0.595  Sum_probs=25.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFS  449 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~  449 (507)
                      ..+||+++|++|||||||+|+|++.++.
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            4579999999999999999999999885

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=98.68  E-value=2.5e-08  Score=86.79  Aligned_cols=139  Identities=20%  Similarity=0.267  Sum_probs=103.7

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.++....++++|..+|.+.+|.++.+|+....+.. +......++..+...+...     .++.++++.|+........
T Consensus         4 lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~   77 (148)
T 2lmt_A            4 LTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTL-GQNPTEAELQDLIAEAENN-----NNGQLNFTEFCGIMAKQMR   77 (148)
T ss_dssp             CCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHH-TCCCCHHHHHHHHHHHHTT-----STTEEEHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhc-CCCchHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHHhc
Confidence            345567789999999999999999999999887665 5666777777766655432     3567999999887543221


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--C
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--E  347 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~  347 (507)
                      ..                                         ...+-|+..|+.||.|++|.|+.+||..++....  .
T Consensus        78 ~~-----------------------------------------~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~  116 (148)
T 2lmt_A           78 ET-----------------------------------------DTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKV  116 (148)
T ss_dssp             TT-----------------------------------------TTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCC
T ss_pred             cc-----------------------------------------CcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccc
Confidence            00                                         1134588999999999999999999999998642  2


Q ss_pred             CCCCCCccccccccCCCCccchHhHHhh
Q 010548          348 SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+.....+...++.|.+|.|++++|+.+
T Consensus       117 ~~~e~~~l~~~~D~d~dG~I~~~EF~~~  144 (148)
T 2lmt_A          117 TDEEIDEMIREADFDGDGMINYEEFVWM  144 (148)
T ss_dssp             CHHHHHHHHHHHCCSCCSSEEHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            2233344566678999999999999874

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=98.67  E-value=5.4e-08  Score=86.46  Aligned_cols=145  Identities=19%  Similarity=0.162  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCCHHH-HHHHH----HHHHhhccCCccCCCcchhhHHHHH
Q 010548          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAE-IVGVK----RVVQEKQHDGVNDLGLTLSGFLFLH  264 (507)
Q Consensus       193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~~~~-~~~l~----~~i~~~~~~~~~~~~~~~~~f~~l~  264 (507)
                      +..+.++++|..+|.+.+|.++.+|+........   +...+..+ +..+.    +.+.+.+.   .++.|+++.|+.+.
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D---~~g~i~~~EF~~~~   79 (174)
T 1q80_A            3 LWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA---GGKGIDETTFINSM   79 (174)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT---TTSCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC---CCCeEcHHHHHHHH
Confidence            4567789999999999999999999999988765   36666666 54432    11222222   57789999999987


Q ss_pred             HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc
Q 010548          265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (507)
Q Consensus       265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~  344 (507)
                      .......                                     .......+.++.+|+.||.|++|.|+.+|+..++..
T Consensus        80 ~~~~~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~  122 (174)
T 1q80_A           80 KEMVKNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM  122 (174)
T ss_dssp             HHHTTST-------------------------------------TCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred             HHHcCcc-------------------------------------cHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence            6543200                                     011234578899999999999999999999999987


Q ss_pred             CCCCCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          345 APESPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       345 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .+..+.....+...+++|.+|.|++++|+..+.
T Consensus       123 ~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~  155 (174)
T 1q80_A          123 LGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             HTCCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence            753344444455667889999999999998774

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=98.67  E-value=3.8e-08  Score=86.61  Aligned_cols=148  Identities=18%  Similarity=0.177  Sum_probs=108.2

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHh---HhcCCCCCHHHHHHHH--------HHHHhhccCCccCCCcchhhHHHH
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQV---KCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGFLFL  263 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~---~~~~~~l~~~~~~~l~--------~~i~~~~~~~~~~~~~~~~~f~~l  263 (507)
                      .+.++++|..+|.+.+|.++.+|+.....   ..++...+..++..+.        ..+...-.+  .++.|+++.|+.+
T Consensus         3 ~~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d--~~g~i~~~ef~~~   80 (166)
T 3akb_A            3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRD--GDQRITREEFVTG   80 (166)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SSSCEEHHHHHHT
T ss_pred             HHHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCcCcHHHHHHH
Confidence            35688999999999999999999999865   3568888888888775        333433222  3677999999987


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (507)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~  343 (507)
                      .........                                   ..+...-.+.++.+|+.+|.|++|.|+.+|+..++.
T Consensus        81 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~  125 (166)
T 3akb_A           81 AVKRLRDKP-----------------------------------DRFAEMARPFLHAALGVADTDGDGAVTVADTARALT  125 (166)
T ss_dssp             HHHHHHHSH-----------------------------------HHHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHH
T ss_pred             HHHHhccCc-----------------------------------cchHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            665432110                                   011122245689999999999999999999999998


Q ss_pred             cCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       344 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .....+.....+...++.|.+|.|++++|+..+.-+
T Consensus       126 ~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~  161 (166)
T 3akb_A          126 AFGVPEDLARQAAAALDTDGDGKVGETEIVPAFARY  161 (166)
T ss_dssp             HTTCCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            765222223345556788999999999999877543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.67  E-value=3.2e-08  Score=102.08  Aligned_cols=83  Identities=20%  Similarity=0.276  Sum_probs=58.2

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCC------------CCC---------------------ccceeEEEEEEc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY------------APT---------------------TGEQYAVNVVDQ  467 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~------------~~t---------------------~~~~~~~~~~~~  467 (507)
                      +..+||+++|.+|+|||||+++|++.......            ..+                     .+.+....  ..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~--~~   99 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR--YF   99 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE--EE
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee--Ee
Confidence            34689999999999999999999876521111            011                     11111111  22


Q ss_pred             CCCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          468 PGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       468 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..+..++.+|||+|+++|....  ..+++.+|++++|||+
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~--~~~~~~aD~~ilVvDa  137 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNM--ATGASTCDLAIILVDA  137 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHH--HHHHTTCSEEEEEEET
T ss_pred             ecCCceEEEEECCChHHHHHHH--HHHHhhCCEEEEEEEC
Confidence            2245678999999999988766  5788999999999996

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.66  E-value=2e-08  Score=102.71  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=57.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce---------------eEEEEEEc---CCCeEEEEEEecCCc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ---------------YAVNVVDQ---PGGNKKTLILQEIPE  482 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~---------------~~~~~~~~---~~~~~~~~i~Dt~G~  482 (507)
                      ...+||+++|.+|+|||||+++|++............+.               ........   .....++.+|||+|+
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            456899999999999999999999865432111000000               00000000   012267889999999


Q ss_pred             hhhhhhccchhhcccccEEEEEEeC
Q 010548          483 EGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ++|....  ..+++.+|++++|+|+
T Consensus        86 ~~~~~~~--~~~~~~~D~~ilVvda  108 (403)
T 3sjy_A           86 EVLMATM--LSGAALMDGAILVVAA  108 (403)
T ss_dssp             GGGHHHH--HHHHTTCSEEEEEEET
T ss_pred             HHHHHHH--HHHHhhCCEEEEEEEC
Confidence            9988776  6788999999999996

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.65  E-value=1.8e-08  Score=99.29  Aligned_cols=27  Identities=30%  Similarity=0.614  Sum_probs=24.9

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      ...+|+|+|.+|||||||+|++++..+
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            346999999999999999999999987

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.65  E-value=1.8e-08  Score=92.94  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=48.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCch----------hhhhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE----------GVKKILS  490 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~  490 (507)
                      ....+|+++|++|||||||+|++++..+...+.++.|+......+...+   .+.+|||+|..          ++.... 
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~-   99 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL-   99 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH-
Confidence            3457999999999999999999998875444344444333233333332   46789999973          222222 


Q ss_pred             chhhc---ccccEEEEEEeC
Q 010548          491 NKEAL---ASCDVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~---~~ad~vilv~D~  507 (507)
                       ..++   +.++++++|+|+
T Consensus       100 -~~~~~~~~~~~~~~~v~d~  118 (210)
T 1pui_A          100 -GEYLEKRQSLQGLVVLMDI  118 (210)
T ss_dssp             -HHHHHHCTTEEEEEEEEET
T ss_pred             -HHHHHhhhcccEEEEEEEC
Confidence             2333   578999999985

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.65  E-value=3.3e-08  Score=94.06  Aligned_cols=109  Identities=7%  Similarity=-0.007  Sum_probs=72.0

Q ss_pred             CCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHH--hHHHHHHhc--CCCCcEEEEEec-ccCCCCCCccchhhhh
Q 010548           66 TSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSS--YWLPELRRL--EIKVPIIVAGCK-LDLRGDHNATSLEEVM  140 (507)
Q Consensus        66 t~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~--~~~~~l~~~--~~~~piilv~NK-~Dl~~~~~~~~~~~~~  140 (507)
                      .+|+...+.+++.|++++|++|||+|++|++.++...+  .+...+...  ..+.|++|.+|| .|++..-..   .+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHH
Confidence            46788889999999999999999999999865432221  122333221  247999999997 588654322   2222


Q ss_pred             HHHHH-HhcccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          141 GPIMQ-QFREIETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       141 ~~~~~-~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      +.+.. .......+..|||.+|+|+.+-++||.+.+..
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            21111 11222357999999999999999999987643

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=98.65  E-value=6.6e-08  Score=86.01  Aligned_cols=151  Identities=21%  Similarity=0.242  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHH---HhHhcCCCCCHHHHHHHH--------HHHHhhccCCccCCCcchhhH
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEF---QVKCFNAPLQPAEIVGVK--------RVVQEKQHDGVNDLGLTLSGF  260 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~---~~~~~~~~l~~~~~~~l~--------~~i~~~~~~~~~~~~~~~~~f  260 (507)
                      ++..+.++++|..+|.+.+|.++.+|+...   ..+.++...+..++..+.        ..+...-.  ..++.|+++.|
T Consensus         3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~--d~dg~i~~~Ef   80 (176)
T 1nya_A            3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGV--GSDGSLTEEQF   80 (176)
T ss_dssp             SHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTS--CTTCCBCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCC--CCCCeEcHHHH
Confidence            345677899999999999999999999986   344578888888888665        33333322  23678999999


Q ss_pred             HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHh
Q 010548          261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED  340 (507)
Q Consensus       261 ~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~  340 (507)
                      +.+..........+                                  .+.....+.++.+|+.+|.|++|.|+.+|+..
T Consensus        81 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~  126 (176)
T 1nya_A           81 IRVTENLIFEQGEA----------------------------------SFNRVLGPVVKGIVGMCDKNADGQINADEFAA  126 (176)
T ss_dssp             HHHHHHHHSSSCHH----------------------------------HHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHH
T ss_pred             HHHHHHHhcCCchh----------------------------------hHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence            99876543211000                                  01122356789999999999999999999999


Q ss_pred             hhccCCCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          341 LFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       341 ~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ++......+.....+...++.|.+|.|++++|+..+..
T Consensus       127 ~l~~~g~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~  164 (176)
T 1nya_A          127 WLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRD  164 (176)
T ss_dssp             HHHHTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHSC
T ss_pred             HHHHhCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence            99876511112233455678899999999999987654

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=98.65  E-value=1.6e-07  Score=82.77  Aligned_cols=141  Identities=19%  Similarity=0.232  Sum_probs=104.4

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      ..+.....+.++|..+|.+.+|.++.+|+...... ++..++..++..+.+.+..     ..++.|+++.|+.+......
T Consensus        21 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~~~~~~~   94 (166)
T 2aao_A           21 LSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKR-VGANLKESEILDLMQAADV-----DNSGTIDYKEFIAATLHLNK   94 (166)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGG-GTCCCCHHHHHHHHHHHCT-----TCCSSBCHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHHHHHhh
Confidence            34556778899999999999999999999998887 4677788777777666532     23668999999987431100


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p  349 (507)
                                                                ....+.++.+|+.+|.|++|.|+.+|+..++...+..+
T Consensus        95 ------------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~  132 (166)
T 2aao_A           95 ------------------------------------------IEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVED  132 (166)
T ss_dssp             ------------------------------------------HHTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC-----
T ss_pred             ------------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCH
Confidence                                                      01124688999999999999999999999998765545


Q ss_pred             CCCCccccccccCCCCccchHhHHhhhhh
Q 010548          350 WDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      .....+...++.|.+|.|++++|+..+.-
T Consensus       133 ~~~~~~~~~~d~~~dg~i~~~eF~~~~~~  161 (166)
T 2aao_A          133 VRIEELMRDVDQDNDGRIDYNEFVAMMQK  161 (166)
T ss_dssp             ---CCHHHHHCTTCSSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            55555666778899999999999987654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.64  E-value=1.5e-08  Score=100.80  Aligned_cols=83  Identities=14%  Similarity=-0.007  Sum_probs=56.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh----hhhhcc-chhhcccc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILS-NKEALASC  498 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~-~~~~~~~a  498 (507)
                      .+|+++|.||||||||++++++.+......+..+.......+.+. +...+.+|||+|...    +..+.. ....++++
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            478999999999999999999887544333333333334455665 346789999999643    222220 02334569


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      +++++|||+
T Consensus       238 d~ll~VvD~  246 (342)
T 1lnz_A          238 RVIVHVIDM  246 (342)
T ss_dssp             CEEEEEEES
T ss_pred             cEEEEEEEC
Confidence            999999996

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=98.64  E-value=6.8e-08  Score=83.61  Aligned_cols=145  Identities=17%  Similarity=0.225  Sum_probs=109.5

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.+...+.+.++|..+|.+.+|.++.+|+....... +..++..++..+...+...     .++.|+++.|+.+......
T Consensus         5 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~-----~~g~i~~~eF~~~~~~~~~   78 (153)
T 3ox6_A            5 LRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMELIELSQQINMN-----LGGHVDFDDFVELMGPKLL   78 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTT-----STTCCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCC-----CCccCcHHHHHHHHHHHhh
Confidence            456667889999999999999999999999888764 6678888888877776432     3678999999998754331


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p  349 (507)
                      ...                                     ......+.++.+|+.+|.|++|.|+.+|+..++...-+.+
T Consensus        79 ~~~-------------------------------------~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~  121 (153)
T 3ox6_A           79 AET-------------------------------------ADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQ  121 (153)
T ss_dssp             TCC-------------------------------------HHHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSC
T ss_pred             ccc-------------------------------------cccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence            111                                     0112256788999999999999999999999998622222


Q ss_pred             CC---CCccccccccCCCCccchHhHHhhhh
Q 010548          350 WD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       350 ~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ..   ...+...++.+.+|.|++++|+..+.
T Consensus       122 ~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~  152 (153)
T 3ox6_A          122 VGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS  152 (153)
T ss_dssp             CCHHHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred             CCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            22   33345567789999999999998653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.63  E-value=2.2e-08  Score=103.41  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=57.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcC--CCCCCC-----------------------------CCCccceeEEEEEEcCCC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLER--PFSENY-----------------------------APTTGEQYAVNVVDQPGG  470 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~  470 (507)
                      ..+||+++|.+|+|||||+++|++.  .+...+                             ....+.+.....+.  ..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~--~~   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--TK   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--CS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe--cC
Confidence            4689999999999999999999864  332110                             11222222222222  34


Q ss_pred             eEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       471 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..++.+|||+|+++|....  ..+++.+|++++|||+
T Consensus        83 ~~~~~iiDtpG~~~f~~~~--~~~~~~aD~~ilVvDa  117 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNM--ITGASQADAAILVVSA  117 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHH--HHTSSCCSEEEEEEEC
T ss_pred             CeEEEEEECCCcHHHHHHH--HhhhhhcCEEEEEEEC
Confidence            5679999999999998776  6789999999999996

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=98.63  E-value=4.7e-08  Score=83.83  Aligned_cols=137  Identities=18%  Similarity=0.312  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (507)
Q Consensus       193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~  272 (507)
                      +..+.++++|..+|.+.+|.++.+|+....+.+ +..++..+++.+.+.+..     ..++.|+++.|+.+........ 
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~-----~~~g~i~~~eF~~~~~~~~~~~-   75 (142)
T 2bl0_C            3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQF-GVRVEPAAFNEMFNEADA-----TGNGKIQFPEFLSMMGRRMKQT-   75 (142)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH-TCCCCHHHHHHHHHHHCT-----TCSSEEEHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCc-----CCCCeeeHHHHHHHHHHHhcCC-
Confidence            345678999999999999999999999988764 677888887777666532     2356899999999876532110 


Q ss_pred             ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCC
Q 010548          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPW  350 (507)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~  350 (507)
                                                              ...+.++.+|+.+|.|++|.|+.+|+..++.....  .+.
T Consensus        76 ----------------------------------------~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~  115 (142)
T 2bl0_C           76 ----------------------------------------TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPH  115 (142)
T ss_dssp             ----------------------------------------CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHH
T ss_pred             ----------------------------------------ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHH
Confidence                                                    12456889999999999999999999999986532  222


Q ss_pred             CCCccccccccCCCCccchHhHHhhhh
Q 010548          351 DEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ....+...++ +.+|.|++++|+.++.
T Consensus       116 ~~~~~~~~~d-~~dg~i~~~eF~~~~~  141 (142)
T 2bl0_C          116 EFAEFLGITE-TEKGQIRYDNFINTMF  141 (142)
T ss_dssp             HHHHHHHHHC-CSSSEECSHHHHTTTC
T ss_pred             HHHHHHHHhC-CCCCcEeHHHHHHHHc
Confidence            2333455567 9999999999998763

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.63  E-value=1.7e-08  Score=103.20  Aligned_cols=83  Identities=13%  Similarity=0.048  Sum_probs=59.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcC--------CCCCC--C-------CCCccceeEEEEEEcCCCeEEEEEEecCCch
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLER--------PFSEN--Y-------APTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~--------~~~~~--~-------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~  483 (507)
                      +..+||+++|.+|+|||||+++|++.        .+...  .       ....+...  ....+..+..++.+|||+|++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChH
Confidence            35689999999999999999999973        22110  0       01122222  223333356788999999999


Q ss_pred             hhhhhccchhhcccccEEEEEEeC
Q 010548          484 GVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +|....  ..+++.+|++++|+|+
T Consensus        87 ~f~~~~--~~~~~~aD~~ilVvda  108 (405)
T 2c78_A           87 DYIKNM--ITGAAQMDGAILVVSA  108 (405)
T ss_dssp             GGHHHH--HHHHTTCSSEEEEEET
T ss_pred             HHHHHH--HHHHHHCCEEEEEEEC
Confidence            987666  6788999999999996

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=98.63  E-value=2.5e-07  Score=82.78  Aligned_cols=153  Identities=13%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhhc-cCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHHH--------HHhhccCCccCCCcchhh
Q 010548          192 PRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRV--------VQEKQHDGVNDLGLTLSG  259 (507)
Q Consensus       192 ~~~~~~l~~~~~~~-d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~~--------i~~~~~~~~~~~~~~~~~  259 (507)
                      +...+.++++|..+ |.+.+|.++.+|+........   +...+..+++.+...        +.....  ..++.|+++.
T Consensus         4 ~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~--d~dG~I~~~E   81 (185)
T 2sas_A            4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADI--NKDDVVSWEE   81 (185)
T ss_dssp             HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCT--TCSSCEEHHH
T ss_pred             HHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCC--CCCCeEcHHH
Confidence            45567889999999 999999999999998887754   256777778777533        333322  2367899999


Q ss_pred             HHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHH
Q 010548          260 FLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELE  339 (507)
Q Consensus       260 f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~  339 (507)
                      |+.+..........                       |          ........+.++.+|+.+|.|+||.|+.+|+.
T Consensus        82 f~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~  128 (185)
T 2sas_A           82 YLAMWEKTIATCKS-----------------------V----------ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQ  128 (185)
T ss_dssp             HHHHHHHHHHTCCS-----------------------G----------GGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHH
T ss_pred             HHHHHHHHhccccc-----------------------h----------hhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHH
Confidence            99987765432100                       0          00112234779999999999999999999999


Q ss_pred             hhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          340 DLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       340 ~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .++......+.....+...++.|.+|.|++++|+..+...
T Consensus       129 ~~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~  168 (185)
T 2sas_A          129 NYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRL  168 (185)
T ss_dssp             HHTTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence            9998765333444455666788999999999999877543

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=98.63  E-value=9.3e-08  Score=82.81  Aligned_cols=139  Identities=21%  Similarity=0.279  Sum_probs=104.1

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~  270 (507)
                      .++..+.++++|..+|.+.+|.++.+|+....+.. +...+..++..+...+..     ..++.|+++.|+.+.......
T Consensus         5 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d~-----~~~g~i~~~eF~~~~~~~~~~   78 (148)
T 1exr_A            5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDA-----DGNGTIDFPEFLSLMARKMKE   78 (148)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHCT-----TCSSSEEHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHHCC-----CCCCcCcHHHHHHHHHhcccC
Confidence            45566778999999999999999999999888765 566777777766655422     235689999999886533210


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--C
Q 010548          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--S  348 (507)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~  348 (507)
                                                               ....+-++..|+.||.|++|.|+.+|+..++.....  .
T Consensus        79 -----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~  117 (148)
T 1exr_A           79 -----------------------------------------QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLT  117 (148)
T ss_dssp             -----------------------------------------HHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCC
T ss_pred             -----------------------------------------CCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence                                                     122356788999999999999999999999987532  1


Q ss_pred             CCCCCccccccccCCCCccchHhHHhhh
Q 010548          349 PWDEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      +.....+...++.|.+|.|++++|+.++
T Consensus       118 ~~~~~~~~~~~d~d~dg~i~~~eF~~~~  145 (148)
T 1exr_A          118 DDEVDEMIREADIDGDGHINYEEFVRMM  145 (148)
T ss_dssp             HHHHHHHHHHHCSSSSSSBCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence            2223334555678999999999999865

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.63  E-value=3.8e-08  Score=102.76  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=57.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCC-------CCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERP-------FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKE  493 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~  493 (507)
                      .+.++|+++|.+++|||||+++|++..       ......+..|.+.....+.++  ...+.+|||+|+++|....  ..
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~--~~   92 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAV--VS   92 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHH--HH
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHH--HH
Confidence            356899999999999999999999876       222222223322222233333  4688999999999987666  67


Q ss_pred             hcccccEEEEEEeC
Q 010548          494 ALASCDVTIFVYDR  507 (507)
Q Consensus       494 ~~~~ad~vilv~D~  507 (507)
                      +++.+|++++|+|+
T Consensus        93 ~~~~aD~~ilVvda  106 (482)
T 1wb1_A           93 AADIIDLALIVVDA  106 (482)
T ss_dssp             HTTSCCEEEEEEET
T ss_pred             HHhhCCEEEEEEec
Confidence            88999999999996

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.62  E-value=3e-10  Score=114.48  Aligned_cols=143  Identities=16%  Similarity=0.047  Sum_probs=79.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh----hH----Hh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPE----KVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK----LN----EE   79 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~----~~   79 (507)
                      ..+|+++|.+|||||||+|+|++.....    ...+..+++|.......-...+.++||||......+    ..    ..
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~  239 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI  239 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence            3589999999999999999999863211    112233444422111111123899999997543211    11    11


Q ss_pred             --hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           80 --LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        80 --~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                        .+..+.++++++.........+.  .++.+..  .+.|+++++||+|......   .+.....+.+.++.  .+.+.+
T Consensus       240 ~~~~~i~~~~~~l~~~~~~~~g~l~--~~d~l~~--~~~~~~~v~nk~d~~~~~~---~~~~~~~~~~~~g~--~l~p~~  310 (368)
T 3h2y_A          240 TPTKEIKPMVFQLNEEQTLFFSGLA--RFDYVSG--GRRAFTCHFSNRLTIHRTK---LEKADELYKNHAGD--LLSPPT  310 (368)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEEE---HHHHHHHHHHHBTT--TBCSSC
T ss_pred             ccccccCceEEEEcCCCEEEEcceE--EEEEecC--CCceEEEEecCcccccccc---HHHHHHHHHHHhCC--ccCCCc
Confidence              36788899999874321111111  1112222  2689999999999875432   34445556666664  345555


Q ss_pred             cccCCC
Q 010548          158 ATTMIQ  163 (507)
Q Consensus       158 A~~g~g  163 (507)
                      +....+
T Consensus       311 ~~~~~~  316 (368)
T 3h2y_A          311 PEELEN  316 (368)
T ss_dssp             HHHHHT
T ss_pred             hhhHhh
Confidence            544333

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=98.62  E-value=1.9e-07  Score=80.45  Aligned_cols=143  Identities=15%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~  270 (507)
                      .+...+.++++|..+|.+.+|.++.+|+....... +...+..++..+.+.+.....+  . +.|+++.|+.+.......
T Consensus         3 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~~~~d~~--~-g~i~~~eF~~~~~~~~~~   78 (149)
T 2mys_C            3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARAL-GQNPTNAEINKILGNPSKEEMN--A-AAITFEEFLPMLQAAANN   78 (149)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhhhcccc--C-CcCcHHHHHHHHHHHhcc
Confidence            34556778999999999999999999999887764 6677788888777766211222  2 789999999986643200


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--
Q 010548          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--  348 (507)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~--  348 (507)
                      .                                       .+...+-++.+|+.||.|++|.|+.+|+..++......  
T Consensus        79 ~---------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~  119 (149)
T 2mys_C           79 K---------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMT  119 (149)
T ss_pred             C---------------------------------------CcchHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCC
Confidence            0                                       01234668899999999999999999999999875321  


Q ss_pred             CCCCCccccccccCCCCccchHhHHhhhh
Q 010548          349 PWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      +.....+... +.+.+|.|++++|+..+.
T Consensus       120 ~~~~~~~~~~-d~~~dg~i~~~eF~~~~~  147 (149)
T 2mys_C          120 EEEVEELMKG-QEDSNGCINYEAFVKHIM  147 (149)
T ss_pred             HHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence            2222334445 789999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.61  E-value=6.3e-08  Score=97.09  Aligned_cols=84  Identities=17%  Similarity=0.071  Sum_probs=58.9

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-----hccchhhcc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALA  496 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~  496 (507)
                      ...+|++||.||||||||+|++++.+......|..|.+.....+.+.  ..+++++||+|.-+-.+     .......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            34799999999999999999999987444444444444444555554  56788999999632110     011245678


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .||++++|+|+
T Consensus       149 ~ad~il~vvD~  159 (376)
T 4a9a_A          149 TCNLLFIILDV  159 (376)
T ss_dssp             HCSEEEEEEET
T ss_pred             hcCcccccccc
Confidence            99999999996

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.61  E-value=2.7e-08  Score=99.79  Aligned_cols=84  Identities=14%  Similarity=0.038  Sum_probs=54.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-------------------CeEEEEEEecCCchh
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-------------------GNKKTLILQEIPEEG  484 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------------~~~~~~i~Dt~G~~~  484 (507)
                      ++|++||.||||||||+|++++........+..|....+..+.+++                   ....+.+|||+|..+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999998753222222222222222233321                   134688999999876


Q ss_pred             hhh----hc-cchhhcccccEEEEEEeC
Q 010548          485 VKK----IL-SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       485 ~~~----~~-~~~~~~~~ad~vilv~D~  507 (507)
                      ..+    +. ....+++.||++++|+|+
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~  109 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRC  109 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEEC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEEC
Confidence            431    11 113468999999999996

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.61  E-value=3.2e-08  Score=100.93  Aligned_cols=83  Identities=14%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcC-------CCCCC--CC-----CCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLER-------PFSEN--YA-----PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI  488 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~-------~~~~~--~~-----~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~  488 (507)
                      .+||+++|.+++|||||+++|++.       .+...  .+     ...+.........+..+..++.+|||+|+++|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            589999999999999999999974       11100  00     01111111122333335678899999999998766


Q ss_pred             ccchhhcccccEEEEEEeC
Q 010548          489 LSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       489 ~~~~~~~~~ad~vilv~D~  507 (507)
                      .  ..+++.+|++++|+|+
T Consensus        83 ~--~~~~~~aD~~ilVvda   99 (397)
T 1d2e_A           83 M--ITGTAPLDGCILVVAA   99 (397)
T ss_dssp             H--HHTSSCCSEEEEEEET
T ss_pred             H--HhhHhhCCEEEEEEEC
Confidence            5  6788999999999996

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=98.61  E-value=1.2e-07  Score=81.41  Aligned_cols=140  Identities=19%  Similarity=0.313  Sum_probs=108.3

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.+...+.++++|..+|.+.+|.++.+|+...... .+...+..++..+...+..     ..++.|+++.|+.+......
T Consensus         5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~-----~~~g~i~~~ef~~~~~~~~~   78 (147)
T 4ds7_A            5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS-LGLSPSEAEVADLMNEIDV-----DGNHAIEFSEFLALMSRQLK   78 (147)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT-----TSSSEEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhcc-----CCCCcCcHHHHHHHHHHhcc
Confidence            45667788999999999999999999999998876 5777888888887776632     24678999999998654321


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC-
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES-  348 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~-  348 (507)
                                                               .....+.+..+|+.+|.|++|.|+.+|+..++...... 
T Consensus        79 -----------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~  117 (147)
T 4ds7_A           79 -----------------------------------------CNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKL  117 (147)
T ss_dssp             -----------------------------------------THHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred             -----------------------------------------CCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCC
Confidence                                                     12234678899999999999999999999999875422 


Q ss_pred             -CCCCCccccccccCCCCccchHhHHhhhh
Q 010548          349 -PWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       349 -p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                       +.....+...++ +.+|.|++++|+..+.
T Consensus       118 ~~~~~~~~~~~~d-~~dg~i~~~eF~~~l~  146 (147)
T 4ds7_A          118 TDAEVDEMLREVS-DGSGEINIKQFAALLS  146 (147)
T ss_dssp             CHHHHHHHHHHHS-SSCSSEEHHHHHHHTT
T ss_pred             CHHHHHHHHHHhc-CCCCcCcHHHHHHHHh
Confidence             222233455567 9999999999998653

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=98.60  E-value=2.5e-08  Score=91.15  Aligned_cols=136  Identities=16%  Similarity=0.169  Sum_probs=104.3

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.+.....++++|..+|.+.+|.++.+|+......+ +..++..++..+...+         ++.|+++.|+.+....+.
T Consensus        51 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~l-g~~~~~~~~~~l~~~~---------~g~i~~~eF~~~~~~~~~  120 (196)
T 3dtp_E           51 FTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSL-GRLCTEQELDSMVAEA---------PGPINFTMFLTIFGDRIA  120 (196)
T ss_dssp             SCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTT-SCCCCHHHHHHHHTTS---------SSCCBHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHc---------cCCCcHHHHHHHHHHHhc
Confidence            445566789999999999999999999999888764 5677777776666543         678999999988642110


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--  347 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--  347 (507)
                      .                                         ....+.++.+|+.||.|++|.|+.+||..++ ....  
T Consensus       121 ~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~  158 (196)
T 3dtp_E          121 G-----------------------------------------TDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKF  158 (196)
T ss_dssp             S-----------------------------------------SCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCC
T ss_pred             C-----------------------------------------CCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCC
Confidence            0                                         0124578899999999999999999999999 5432  


Q ss_pred             CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          348 SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .+.....+...++.|.+|.|++++|+.++.
T Consensus       159 ~~~~~~~l~~~~D~d~dG~I~~~EF~~~l~  188 (196)
T 3dtp_E          159 SQDEVDQALSEAPIDGNGLIDIKKFAQILT  188 (196)
T ss_dssp             CHHHHHHHHHSSCEETTEECHHHHHHHHHS
T ss_pred             CHHHHHHHHHHcCCCCCCEEeHHHHHHHHH
Confidence            222234456667889999999999998764

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=98.60  E-value=7.8e-08  Score=83.99  Aligned_cols=136  Identities=15%  Similarity=0.226  Sum_probs=103.9

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.+.....++++|..+|.+.+|.++.+|+......+ +..++..++..+..   .      .++.|+++.|+.+......
T Consensus        12 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~---~------~~g~i~~~eF~~~~~~~~~   81 (156)
T 1wdc_B           12 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLK---E------APGPLNFTMFLSIFSDKLS   81 (156)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHH-SSCCCHHHHHHHHT---T------SSSCCCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHH---h------CCCcCcHHHHHHHHHHHhc
Confidence            456677889999999999999999999999988875 66777777766653   1      3679999999988664321


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--  347 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--  347 (507)
                      ..                                         ...+-++.+|+.||.|++|.|+.+|+..++.....  
T Consensus        82 ~~-----------------------------------------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~  120 (156)
T 1wdc_B           82 GT-----------------------------------------DSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNF  120 (156)
T ss_dssp             SC-----------------------------------------CCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCC
T ss_pred             CC-----------------------------------------ChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCC
Confidence            00                                         01356889999999999999999999999987522  


Q ss_pred             CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          348 SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .+.....+...++.| +|.|++++|+.++.
T Consensus       121 ~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~  149 (156)
T 1wdc_B          121 NKDEMRMTFKEAPVE-GGKFDYVKFTAMIK  149 (156)
T ss_dssp             CHHHHHHHHHHCCEE-TTEECHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCC-CCEEeHHHHHHHHh
Confidence            222233345556788 99999999998654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.60  E-value=4.3e-08  Score=101.76  Aligned_cols=82  Identities=10%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcC--CCCCC----------------------C-------CCCccceeEEEEEEcCCC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLER--PFSEN----------------------Y-------APTTGEQYAVNVVDQPGG  470 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~--~~~~~----------------------~-------~~t~~~~~~~~~~~~~~~  470 (507)
                      ..++|+++|.+|+|||||+++|++.  .+...                      .       ....+.+.....+..  +
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--~   83 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--P   83 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--S
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--C
Confidence            4589999999999999999999864  22100                      0       011222221122222  4


Q ss_pred             eEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       471 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..++.+|||+|+++|....  ..+++.+|++++|||+
T Consensus        84 ~~~~~iiDtPGh~~f~~~~--~~~~~~aD~~ilVvda  118 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNM--ITGTSQADCAILIIAG  118 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHH--HHSSSCCSEEEEEEEC
T ss_pred             CceEEEEECCCcHHHHHHH--HhhhhhCCEEEEEEeC
Confidence            5689999999999988776  6788999999999996

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=98.60  E-value=2.4e-07  Score=83.76  Aligned_cols=155  Identities=14%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             cHHHHHHHHHHHhhc-cCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHHHHHhhc------cCCccCCCcchhhH
Q 010548          191 KPRCVRALKRIFIIC-DHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQ------HDGVNDLGLTLSGF  260 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~-d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~~i~~~~------~~~~~~~~~~~~~f  260 (507)
                      .+...+.++++|..+ |.+.+|.++.+|+........   +...+..+++.+.+.+.+..      -+...++.|+++.|
T Consensus         7 s~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef   86 (191)
T 2ccm_A            7 SDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEW   86 (191)
T ss_dssp             CHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHH
T ss_pred             cHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHH
Confidence            455677889999999 999999999999999988764   77777778877773332211      12223678999999


Q ss_pred             HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHh
Q 010548          261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED  340 (507)
Q Consensus       261 ~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~  340 (507)
                      +.+..........                       |          ..+...-.+.+..+|+.+|.|+||.|+.+|+..
T Consensus        87 ~~~~~~~~~~~~~-----------------------~----------~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~  133 (191)
T 2ccm_A           87 LKMWAECVKSVEK-----------------------G----------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST  133 (191)
T ss_dssp             HHHHHHHHHHHHT-----------------------T----------CCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred             HHHHHHHhccccc-----------------------h----------hhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            9887654321000                       0          012234456799999999999999999999999


Q ss_pred             hhccCCCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          341 LFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       341 ~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ++......+.....+...++.|.+|.|++++|+..+.-
T Consensus       134 ~l~~~g~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~  171 (191)
T 2ccm_A          134 VYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLWTE  171 (191)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            99766422222333455678899999999999987653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.59  E-value=1.5e-07  Score=96.25  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCC---CCCCCC--CccceeEEEEEEc-------------C--CC----eEEEEE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPF---SENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLI  476 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~---~~~~~~--t~~~~~~~~~~~~-------------~--~~----~~~~~i  476 (507)
                      ...++|+++|.+++|||||+++|++...   .....+  |....+....+..             +  +.    ..++.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            4568999999999999999999996432   222233  3333343322211             1  11    267899


Q ss_pred             EecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          477 LQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       477 ~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      |||+|+++|....  ...+..+|++++|+|+
T Consensus        88 iDtPGh~~f~~~~--~~~~~~~D~~ilVvda  116 (410)
T 1kk1_A           88 IDAPGHEALMTTM--LAGASLMDGAILVIAA  116 (410)
T ss_dssp             EECSSHHHHHHHH--HHCGGGCSEEEEEEET
T ss_pred             EECCChHHHHHHH--HhhhhhCCEEEEEEEC
Confidence            9999999987655  5667789999999996

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=98.58  E-value=7.5e-08  Score=90.13  Aligned_cols=147  Identities=13%  Similarity=0.033  Sum_probs=110.2

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhcc----CCccCCCcchhhHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH----DGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~f~~l~~  265 (507)
                      ..+.....++++|..+|.+.+|.++.+|+.....+.++......++..+...+-..+.    +...++.|+++.|+.+..
T Consensus        45 ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~  124 (226)
T 2lvv_A           45 KDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRL  124 (226)
T ss_dssp             CCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHH
Confidence            3456677889999999999999999999999887878888887788777776633220    112356899999998632


Q ss_pred             HHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC
Q 010548          266 LFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (507)
Q Consensus       266 ~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~  345 (507)
                      ..-.                                          ....+.++.+|+.||.|++|.|+.+|+..++...
T Consensus       125 ~~~~------------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~  162 (226)
T 2lvv_A          125 MLCY------------------------------------------IYDIFELTVMFDTMDKDGSLLLELQEFKEALPKL  162 (226)
T ss_dssp             HHHH------------------------------------------HHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHH
T ss_pred             HHHh------------------------------------------ccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHH
Confidence            1110                                          0113578899999999999999999999999753


Q ss_pred             ---CCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          346 ---PESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       346 ---p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                         ...+-....+...++.|.+|.|++++|+.+...
T Consensus       163 ~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~  198 (226)
T 2lvv_A          163 KEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVT  198 (226)
T ss_dssp             HHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence               333333455667788999999999999986653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.58  E-value=3.9e-08  Score=103.62  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=56.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCC---------------C-----CCCccceeEEEEEEcCCCeEEEEEEecCC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN---------------Y-----APTTGEQYAVNVVDQPGGNKKTLILQEIP  481 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~---------------~-----~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G  481 (507)
                      +..+|+++|.+|+|||||+++|+.......               .     ..+.+.........+..+..++.+|||+|
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            458999999999999999999996421110               0     00111111111112222567889999999


Q ss_pred             chhhhhhccchhhcccccEEEEEEeC
Q 010548          482 EEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       482 ~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ++.|....  ..+++.+|++++|+|+
T Consensus        92 ~~df~~~~--~~~l~~aD~~IlVvDa  115 (529)
T 2h5e_A           92 HEDFSEDT--YRTLTAVDCCLMVIDA  115 (529)
T ss_dssp             STTCCHHH--HHGGGGCSEEEEEEET
T ss_pred             ChhHHHHH--HHHHHHCCEEEEEEeC
Confidence            99988665  6789999999999996

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=98.58  E-value=1.4e-07  Score=86.77  Aligned_cols=156  Identities=18%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-CCCHHHHHHHHHHHHhhc---cCCccCCCcchhhHHHHHHHH
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQ---HDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-~l~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      ++..+.++++|..+|.+.+|.++.+|+......+... ..+..+++.+...+ +.+   -+...++.|+++.|+.+....
T Consensus        32 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~~~~~~~~~~l~~~~-~~lf~~~D~d~dg~i~~~EF~~~~~~~  110 (208)
T 2hpk_A           32 PKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAV-RVFFLHKGVEPVNGLLREDWVEANRVF  110 (208)
T ss_dssp             ----CHHHHHHHHHCTTCSSEECHHHHTHHHHHHHHHSCCCHHHHHHHHHHH-HHHHHHTTCBTTTBEEGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence            4445678899999999999999999999988875321 66778888777333 211   122236789999999986520


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                      -.       +.-.|...-      .    |              ..-.+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus       111 ~~-------~~~~~~~~~------~----~--------------~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~  159 (208)
T 2hpk_A          111 AE-------AERERERRG------E----P--------------SLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDV  159 (208)
T ss_dssp             HH-------HHHHHHHTT------C----C--------------CHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTS
T ss_pred             hh-------hhhhhhccC------C----h--------------HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCc
Confidence            00       000000000      0    0              112345889999999999999999999999987663


Q ss_pred             CCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          348 SPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .+.....+...++.|.+|.|++++|+..+.-.
T Consensus       160 ~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  191 (208)
T 2hpk_A          160 PQEAAYTFFEKADTDKSGKLERTELVHLFRKF  191 (208)
T ss_dssp             CTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            33334445566788999999999999988654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.57  E-value=1.9e-07  Score=95.50  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=57.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCC---CCCCCCC--CccceeEEEEEEc-------------C--CC----eEEEEEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERP---FSENYAP--TTGEQYAVNVVDQ-------------P--GG----NKKTLIL  477 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~~----~~~~~i~  477 (507)
                      ..++|+++|..++|||||+++|++..   +.....+  |....+....+..             +  +.    ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            45899999999999999999999543   2223333  4433444333321             1  11    2678999


Q ss_pred             ecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          478 QEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       478 Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ||+|+++|....  ...+..+|++++|+|+
T Consensus        87 DtPGh~~f~~~~--~~~~~~~D~~ilVvda  114 (408)
T 1s0u_A           87 DSPGHETLMATM--LSGASLMDGAILVIAA  114 (408)
T ss_dssp             ECSSHHHHHHHH--HTTCSCCSEEEEEEET
T ss_pred             ECCCHHHHHHHH--HHhHhhCCEEEEEEEC
Confidence            999999987655  5667788999999996

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.57  E-value=6.9e-07  Score=90.75  Aligned_cols=159  Identities=11%  Similarity=0.043  Sum_probs=88.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeCC-cccCC-ceEEEEEeCCCCccchhhhHH-----hhcc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLPP-DFYPD-RVPVTIIDTSSSLENKGKLNE-----ELKR   82 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~~-~~~~~-~~~~~i~Dt~G~~~~~~~~~~-----~~~~   82 (507)
                      ...|+|+|++|||||||+|.|++......  +......++... .+... ...+.++|++|..........     .+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            34799999999999999999998542211  111111111100 11111 125789999996432222222     2344


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC-------CCCc--cchhhhhHHHHH----Hhc-
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG-------DHNA--TSLEEVMGPIMQ----QFR-  148 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~-------~~~~--~~~~~~~~~~~~----~~~-  148 (507)
                      .+.+++ +|...+ .-+.+.  +...+...  ++|+++|.||.|+.-       -+..  ....+.+..+..    +.+ 
T Consensus       149 ~~~~~~-lS~G~~-~kqrv~--la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRF-KKNDID--IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCC-CHHHHH--HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCc-cHHHHH--HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            566665 776531 122222  55555555  789999999999741       0111  011122223321    111 


Q ss_pred             ccCcEEEeCc--ccCCCchHHHHHHHHHHc
Q 010548          149 EIETCVECSA--TTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       149 ~~~~~~~~SA--~~g~gi~~l~~~i~~~i~  176 (507)
                      .....+.+|+  ..+.|++++.+.+.+.+.
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence            1225789999  677789999999987763

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.57  E-value=6e-08  Score=102.75  Aligned_cols=82  Identities=16%  Similarity=0.192  Sum_probs=56.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCC--CCCCCCccceeEEEEEEcCCC-----------------------------
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFS--ENYAPTTGEQYAVNVVDQPGG-----------------------------  470 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~-----------------------------  470 (507)
                      ...+|+|+|.+|||||||+|++++.++.  .++..+.+++..  .+..+..                             
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            4579999999999999999999999875  233333333321  1111100                             


Q ss_pred             -e----------EEEEEEecCCchh-----------hhhhccchhhcccccEEEEEEeC
Q 010548          471 -N----------KKTLILQEIPEEG-----------VKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       471 -~----------~~~~i~Dt~G~~~-----------~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                       .          .++.+|||+|...           +..+.  ..+++++|++++|+|+
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~--~~~l~~aD~il~VvDa  198 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVL--RWFAERVDLIILLFDA  198 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHH--HHHHHHCSEEEEEEET
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHH--HHHHHhCCEEEEEEeC
Confidence             0          2578999999864           33444  5678899999999996

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.56  E-value=1.3e-07  Score=94.91  Aligned_cols=84  Identities=17%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh-------ccchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-------LSNKEA  494 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~  494 (507)
                      ..++|+++|.+|||||||+|++++........+..+.......+..  +...+.+|||+|.......       ......
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            4589999999999999999999998754333333333333333333  3567899999998543210       000123


Q ss_pred             cccccEEEEEEeC
Q 010548          495 LASCDVTIFVYDR  507 (507)
Q Consensus       495 ~~~ad~vilv~D~  507 (507)
                      ...+|++++|+|+
T Consensus       244 ~~~ad~illV~D~  256 (357)
T 2e87_A          244 RYLGNLIIYIFDP  256 (357)
T ss_dssp             GGTCSEEEEEECT
T ss_pred             HhcCCEEEEEEeC
Confidence            4569999999995

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.56  E-value=9e-08  Score=104.28  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=57.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccce---------eEEEEEEcCCC----------------------
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQ---------YAVNVVDQPGG----------------------  470 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~---------~~~~~~~~~~~----------------------  470 (507)
                      ..++|+|+|.+|+|||||+|+|++.++.++...+++..         ........++.                      
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            45899999999999999999999998776654443310         00011111100                      


Q ss_pred             -----------------------e--EEEEEEecCCchhhhhh-ccchhhcccccEEEEEEeC
Q 010548          471 -----------------------N--KKTLILQEIPEEGVKKI-LSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       471 -----------------------~--~~~~i~Dt~G~~~~~~~-~~~~~~~~~ad~vilv~D~  507 (507)
                                             .  ..+.+|||+|....... ..+..+++.||++++|+|+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda  210 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRA  210 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEET
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeC
Confidence                                   0  35789999997653211 1125788999999999995

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.56  E-value=6.6e-08  Score=98.25  Aligned_cols=113  Identities=18%  Similarity=0.204  Sum_probs=63.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCee---eCCcccCCc--eEEEEEeCCCCccch-------------
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTR---LPPDFYPDR--VPVTIIDTSSSLENK-------------   73 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t---~~~~~~~~~--~~~~i~Dt~G~~~~~-------------   73 (507)
                      ++++|+|++|+|||||+|.|++..+... .....+..+   +...+....  ..+.++|++|.....             
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            4599999999999999999998754321 111112211   111112222  368999999875321             


Q ss_pred             -hhhHHhh-------------ccC--C-EEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           74 -GKLNEEL-------------KRA--D-AVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        74 -~~~~~~~-------------~~a--d-~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                       ..+..++             ..+  | +++|+.|...+.+..++.  ++..+.   .++|+|+|.||+|....
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die--ilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV--TMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH--HHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH--HHHHHh---hCCCEEEEEcchhccch
Confidence             1111111             122  2 466777876665554433  555554   37999999999998754

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.55  E-value=6.2e-08  Score=87.05  Aligned_cols=137  Identities=18%  Similarity=0.274  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ++-...++++|..+|.+.+|.++.+|+....+.+ +...+..++..+...+.   +  -.++.++++.|+.+....    
T Consensus         7 ~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~l-g~~~~~~~~~~~~~~~d---~--d~~~~i~~~ef~~~~~~~----   76 (176)
T 2lhi_A            7 EEQIAEFKEAFALFDKDNNGSISSSELATVMRSL-GLSPSEAEVNDLMNEID---V--DGNHQIEFSEFLALMSRQ----   76 (176)
T ss_dssp             TTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHH-TCCCCHHHHHHHHTTTC---S--SCSSSBCTTHHHHHHTSS----
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHc-CCChhHHHHHHHHHHhC---c--CCCccchHHHHHHHHHHh----
Confidence            3445578899999999999999999999887664 66777777766654432   2  236789999998874310    


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CC
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SP  349 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p  349 (507)
                                                           .......+-|+..|+.||.|++|.|+.+||..++.....  .+
T Consensus        77 -------------------------------------~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~  119 (176)
T 2lhi_A           77 -------------------------------------LKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTD  119 (176)
T ss_dssp             -------------------------------------CCSSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCH
T ss_pred             -------------------------------------cccCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccch
Confidence                                                 001123467899999999999999999999999987532  22


Q ss_pred             CCCCccccccccCCCCccchHhHHhhh
Q 010548          350 WDEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      .....+...++ |.+|.|++++|+.+.
T Consensus       120 ~ei~~l~~~~d-d~dG~I~~~EF~~~m  145 (176)
T 2lhi_A          120 AEVDDMLREVS-DGSGEINIQQFAALL  145 (176)
T ss_dssp             HHHHHHHHHHH-TTSSCBCTTHHHHHH
T ss_pred             HHHHHHHHhhc-CCCCeEeHHHHHHHH
Confidence            33344555566 999999999999864

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=98.55  E-value=2.6e-08  Score=87.95  Aligned_cols=139  Identities=14%  Similarity=0.211  Sum_probs=100.2

Q ss_pred             ccHHHHHHHHHHHhhccC--CCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDH--DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~--~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      +.++-...++++|..+|.  +.+|.++..|+....+. +|...+..++..+..    ..  ...++.|+++.|+.++...
T Consensus         3 Lt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~-lG~~~t~~el~~~~~----~d--~~~~g~i~f~eFl~~~~~~   75 (159)
T 3i5g_C            3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRC-LGMNPTEAQVHQHGG----TK--KMGEKAYKLEEILPIYEEM   75 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHH-TTCCCCHHHHHTTTC----CS--STTSCEECHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHH-cCCCCCHHHHHHHHc----cc--ccCCCcccHHHHHHHHHHh
Confidence            456667789999999984  78999999999998865 467778877765432    22  2236789999999986543


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                      ..+..                                       ....+-|+..|+.||+|++|.|+.+||.+++.....
T Consensus        76 ~~~~~---------------------------------------~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~  116 (159)
T 3i5g_C           76 SSKDT---------------------------------------GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGE  116 (159)
T ss_dssp             TTCCT---------------------------------------TCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSS
T ss_pred             hcccc---------------------------------------cchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCC
Confidence            32111                                       112345889999999999999999999999987532


Q ss_pred             --CCCCCCccccccc--cCCCCccchHhHHh
Q 010548          348 --SPWDEAPYKDAAE--TTALGNLTLKGFVS  374 (507)
Q Consensus       348 --~p~~~~~~~~~~~--~~~~~~~~~~~~~~  374 (507)
                        .+.....+...++  .|.+|.|++++|+.
T Consensus       117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~  147 (159)
T 3i5g_C          117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMK  147 (159)
T ss_dssp             CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHH
T ss_pred             CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHH
Confidence              2222333444445  47889999999986

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=98.54  E-value=1.6e-07  Score=87.56  Aligned_cols=139  Identities=14%  Similarity=0.153  Sum_probs=109.1

Q ss_pred             hhcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHH
Q 010548          187 EQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       187 ~~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~  266 (507)
                      ...+.++..+.+++.|..+|.+.+|.++.+|+....+.. +..++..+++.+.+.+.     ...++.|+++.|+.+...
T Consensus        42 ~~~l~~~e~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-g~~~~~~~~~~l~~~~D-----~d~dg~I~~~EF~~~~~~  115 (220)
T 3sjs_A           42 LNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPG-GIRLSPQTALRMMRIFD-----TDFNGHISFYEFMAMYKF  115 (220)
T ss_dssp             GGGCCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHCCBGG-GBCCCHHHHHHHHHHHC-----TTCSSCBCHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhC-----CCCCCcCCHHHHHHHHHH
Confidence            345667778889999999999999999999999887765 67788888888877763     224678999999998653


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-
Q 010548          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-  345 (507)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-  345 (507)
                      .                                                +-++.+|+.||+|++|.|+.+|+..++... 
T Consensus       116 ~------------------------------------------------~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g  147 (220)
T 3sjs_A          116 M------------------------------------------------ELAYNLFVMNARARSGTLEPHEILPALQQLG  147 (220)
T ss_dssp             H------------------------------------------------HHHHHHHHHHCCSSTTEECHHHHHHHHHHHT
T ss_pred             H------------------------------------------------HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhC
Confidence            1                                                347889999999999999999999999864 


Q ss_pred             -CCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          346 -PESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       346 -p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                       +..+.....+...++ |.+|.|++++|+.+...+.
T Consensus       148 ~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l~  182 (220)
T 3sjs_A          148 FYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFAA  182 (220)
T ss_dssp             CCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHHH
Confidence             223333444556677 9999999999999887664

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.54  E-value=2.6e-08  Score=100.12  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=36.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCC-CCC--------CCccceeEEEEEEcCCCeEEEEEEecCCc-------hh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-NYA--------PTTGEQYAVNVVDQPGGNKKTLILQEIPE-------EG  484 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------~~  484 (507)
                      ...++|+++|++|||||||++++++..... .+.        ++.+.......+...+...++.+|||+|.       ++
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346899999999999999999987654332 221        23333332222333334557899999998       66


Q ss_pred             hhhhc
Q 010548          485 VKKIL  489 (507)
Q Consensus       485 ~~~~~  489 (507)
                      +..+.
T Consensus       115 ~~~i~  119 (361)
T 2qag_A          115 FKTII  119 (361)
T ss_dssp             -CCTH
T ss_pred             HHHHH
Confidence            66554

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.53  E-value=2e-08  Score=105.66  Aligned_cols=82  Identities=13%  Similarity=0.041  Sum_probs=57.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCC---------------CC-------CCCccceeEEEEEEcCCCeEEEEEEec
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSE---------------NY-------APTTGEQYAVNVVDQPGGNKKTLILQE  479 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~---------------~~-------~~t~~~~~~~~~~~~~~~~~~~~i~Dt  479 (507)
                      +..+|+|+|.+|||||||+++|+......               ..       ....+.......+..  +..++.+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence            35799999999999999999997221111               00       011111111222222  4678899999


Q ss_pred             CCchhhhhhccchhhcccccEEEEEEeC
Q 010548          480 IPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       480 ~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +|+++|....  ..+++.+|++++|+|+
T Consensus        90 PG~~df~~~~--~~~l~~aD~allVvDa  115 (528)
T 3tr5_A           90 PGHADFTEDT--YRTLTAVDSALMVIDA  115 (528)
T ss_dssp             CCSTTCCHHH--HHGGGGCSEEEEEEET
T ss_pred             CCchhHHHHH--HHHHHhCCEEEEEEeC
Confidence            9999988776  7899999999999996

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.53  E-value=1.2e-07  Score=95.28  Aligned_cols=29  Identities=28%  Similarity=0.364  Sum_probs=25.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENY  452 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~  452 (507)
                      .+|+|+|++|||||||+|++++..+....
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~   63 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG   63 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence            49999999999999999999998874443

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=98.53  E-value=2.6e-07  Score=80.90  Aligned_cols=144  Identities=17%  Similarity=0.253  Sum_probs=109.7

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.++..+.+.++|..+|.+.+|.++.+|+....... +..++..++..+.+.+..     ..++.|+++.|+.+......
T Consensus        14 ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~~~~~~~   87 (162)
T 1top_A           14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDE-----DGSGTIDFEEFLVMMVRQMK   87 (162)
T ss_dssp             SCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHCT-----TSCCEEEHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC-----CCCCcEeHHHHHHHHHHHhc
Confidence            556778889999999999999999999999988764 667788888777666532     23678999999998765432


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--  347 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--  347 (507)
                      ...                                      .....+.++.+|+.+|.|++|.|+.+|+..++.....  
T Consensus        88 ~~~--------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~  129 (162)
T 1top_A           88 EDA--------------------------------------KGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHV  129 (162)
T ss_dssp             HHH--------------------------------------HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCC
T ss_pred             ccc--------------------------------------ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC
Confidence            100                                      0124567899999999999999999999999987542  


Q ss_pred             CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          348 SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .+.....+...++.|.+|.|++++|+..+.
T Consensus       130 ~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~  159 (162)
T 1top_A          130 TEEDIEDLMKDSDKNNDGRIDFDEFLKMME  159 (162)
T ss_dssp             CHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence            112223345566789999999999998764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.53  E-value=1.8e-08  Score=107.68  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=44.2

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCC-------------------------------CCCCccceeEEEEEEcC
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSEN-------------------------------YAPTTGEQYAVNVVDQP  468 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~  468 (507)
                      ....++|+++|.+|+|||||+++|++......                               ..+.+|.+.....+.. 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            34578999999999999999999974321111                               0112222222222222 


Q ss_pred             CCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       469 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                       +..++.||||+|+++|....  ..+++.||++|+|+|+
T Consensus       253 -~~~~i~iiDTPGh~~f~~~~--~~~~~~aD~alLVVDa  288 (592)
T 3mca_A          253 -DKKIYEIGDAPGHRDFISGM--IAGASSADFAVLVVDS  288 (592)
T ss_dssp             -------CCEEESSSEEEEEC--CC-------CCSEEEE
T ss_pred             -CCeEEEEEECCChHHHHHHH--HHHHhhCCEEEEEEEC
Confidence             35678899999999987665  6788999999999995

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.51  E-value=1.5e-08  Score=105.50  Aligned_cols=81  Identities=14%  Similarity=0.163  Sum_probs=59.5

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      ..+|+++|.+++|||||+++|.+..+.....++.+.......+..+  ..++.+|||+|++.|...+  ..+++.+|+++
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~--~~~~~~aD~aI   79 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMR--ARGAQATDIVV   79 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSB--CSSSBSCSSEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHH--HHHHhhCCEEE
Confidence            4689999999999999999999766543333333322211122333  3467889999999998877  56789999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 LVVda   84 (501)
T 1zo1_I           80 LVVAA   84 (501)
T ss_dssp             EEEET
T ss_pred             EEeec
Confidence            99996

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=98.50  E-value=3.1e-07  Score=83.90  Aligned_cols=150  Identities=20%  Similarity=0.282  Sum_probs=109.0

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      ....++++|..+|.+.+|.++.+|+......+ +..++..+++.+.+.+..     ..++.|+++.|+.+..        
T Consensus        35 ~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~-----d~dg~i~~~ef~~~~~--------  100 (204)
T 3e3r_A           35 GIQGLARFFRQLDRDGSRSLDADEFRQGLAKL-GLVLDQAEAEGVCRKWDR-----NGSGTLDLEEFLRALR--------  100 (204)
T ss_dssp             -----CHHHHHHCTTCCSSBCHHHHHHHHHTT-TCCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHTS--------
T ss_pred             hHHHHHHHHHHHccCCCCCcCHHHHHHHHHHc-CCCCCHHHHHHHHHHhcc-----CCCCcCcHHHHHHHHH--------
Confidence            34567889999999999999999999988765 667888888777766632     2467899999998821        


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC-----C
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-----S  348 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~-----~  348 (507)
                                                        ...+..-.+.++.+|+.||.|++|.|+.+|+..++.....     .
T Consensus       101 ----------------------------------~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~  146 (204)
T 3e3r_A          101 ----------------------------------PPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSG  146 (204)
T ss_dssp             ----------------------------------CCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTT
T ss_pred             ----------------------------------hhcCchHHHHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccC
Confidence                                              0112344578999999999999999999999999985421     1


Q ss_pred             CCC----CCcccccccc-CCCCccchHhHHhhhhhhh-hcCHHHHHHHH
Q 010548          349 PWD----EAPYKDAAET-TALGNLTLKGFVSKWALMT-LLDPRHSLANL  391 (507)
Q Consensus       349 p~~----~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~-~~d~~~~l~~l  391 (507)
                      .+.    ...+...++. |.+|.|++++|+..+.-+. .++.......+
T Consensus       147 ~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~~~~~~d~~f~~~  195 (204)
T 3e3r_A          147 EWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASMNTDEEFVAM  195 (204)
T ss_dssp             SSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             CCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHcCccCCChHHHHHH
Confidence            111    2234455677 9999999999999998887 55444444443

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=98.50  E-value=1.5e-07  Score=80.79  Aligned_cols=131  Identities=21%  Similarity=0.273  Sum_probs=101.5

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w  277 (507)
                      ++++|..+|.+.+|.++.+|+....+.. +..++..++..+.+.        ..++.|+++.|+.+......        
T Consensus         7 l~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~--------   69 (145)
T 2bl0_B            7 IQECFQIFDKDNDGKVSIEELGSALRSL-GKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK--------   69 (145)
T ss_dssp             HHHHHHHHCTTCSSCEEGGGHHHHHHHT-TCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC--------
T ss_pred             HHHHHHHhCCCCcCccCHHHHHHHHHHh-CCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh--------
Confidence            8899999999999999999999988875 667778777776665        23678999999988531100        


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--CCCCCcc
Q 010548          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--PWDEAPY  355 (507)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~--p~~~~~~  355 (507)
                                                      -.....+-++.+|+.+|.|++|.|+.+|+..++......  +.....+
T Consensus        70 --------------------------------~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~  117 (145)
T 2bl0_B           70 --------------------------------TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEEL  117 (145)
T ss_dssp             --------------------------------CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred             --------------------------------cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHH
Confidence                                            112345678999999999999999999999999876322  2223345


Q ss_pred             ccccccCCCCccchHhHHhhhh
Q 010548          356 KDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ...++.|.+|.|++++|+..+.
T Consensus       118 ~~~~d~~~dg~i~~~eF~~~~~  139 (145)
T 2bl0_B          118 MKEVSVSGDGAINYESFVDMLV  139 (145)
T ss_dssp             HTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHHcCCCCCCcEeHHHHHHHHH
Confidence            5667889999999999998765

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=98.50  E-value=2.7e-08  Score=91.04  Aligned_cols=139  Identities=21%  Similarity=0.229  Sum_probs=97.9

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~  270 (507)
                      .+.....+.++|..+|.+.+|.++.+|+....... +..++..+++.+.+.+..     ..++.|+++.|+.+.....  
T Consensus        52 ~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~-g~~~~~~~~~~l~~~~D~-----d~~g~I~~~EF~~~~~~~~--  123 (197)
T 3pm8_A           52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI-GYQKIPPDIHQVLRDIDS-----NASGQIHYTDFLAATIDKQ--  123 (197)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-C----CHHHHHHHHC------------CEEHHHHHHTTCCHH--
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHHHHHH--
Confidence            45567789999999999999999999999998876 667777777777766632     2367899999988732111  


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC-CCC
Q 010548          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-ESP  349 (507)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p-~~p  349 (507)
                                                              .....+.++.+|+.||.|++|.|+.+|+..++.... +.+
T Consensus       124 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~  163 (197)
T 3pm8_A          124 ----------------------------------------TYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENP  163 (197)
T ss_dssp             ----------------------------------------HHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCH
T ss_pred             ----------------------------------------hhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCC
Confidence                                                    001246789999999999999999999999999762 111


Q ss_pred             ---CCCCccccccccCCCCccchHhHHhhhh
Q 010548          350 ---WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       350 ---~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                         .....+...++.|.+|.|++++|+.++.
T Consensus       164 ~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~  194 (197)
T 3pm8_A          164 LIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS  194 (197)
T ss_dssp             HHHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence               1123345567889999999999998764

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=98.50  E-value=5.8e-07  Score=81.54  Aligned_cols=131  Identities=19%  Similarity=0.212  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  274 (507)
                      .+.++++|..+|.+.+|.++.+|+.... ...+..++..+++.+.+.+..     ..++.|+++.|+.+...        
T Consensus        26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l-~~~~~~~~~~~~~~l~~~~D~-----d~dG~I~~~EF~~~~~~--------   91 (191)
T 1y1x_A           26 NQELMEWFRAVDTDGSGAISVPELNAAL-SSAGVPFSLATTEKLLHMYDK-----NHSGEITFDEFKDLHHF--------   91 (191)
T ss_dssp             TSCHHHHHHHHCTTCSSSBCHHHHHHHH-CBTTBCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHcCCCCCcCcHHHHHHHH-HHcCCCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHHHH--------
Confidence            3467889999999999999999999998 455667888888877766532     23678999999988542        


Q ss_pred             chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--CCCC
Q 010548          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--PWDE  352 (507)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~--p~~~  352 (507)
                                                              .+-++.+|+.||.|++|.|+.+|+..++......  +...
T Consensus        92 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~  131 (191)
T 1y1x_A           92 ----------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTF  131 (191)
T ss_dssp             ----------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHH
T ss_pred             ----------------------------------------HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHH
Confidence                                                    1357889999999999999999999999875321  1222


Q ss_pred             CccccccccCCCCccchHhHHhhhhhh
Q 010548          353 APYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ..+...++.|.+|.|++++|+.++...
T Consensus       132 ~~~~~~~D~d~dg~i~~~eF~~~~~~~  158 (191)
T 1y1x_A          132 QALMRKFDRQRRGSLGFDDYVELSIFV  158 (191)
T ss_dssp             HHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence            334556788999999999999998764

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=98.49  E-value=7.8e-08  Score=89.50  Aligned_cols=146  Identities=13%  Similarity=0.077  Sum_probs=108.4

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhcc----CCccCCCcchhhHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH----DGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~f~~l~~~  266 (507)
                      .++..+.++++|..+|.+.+|.++.+|+.......++......++..+...+-+.+.    ....++.|+++.|+.+...
T Consensus        43 s~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~I~~~EF~~~~~~  122 (219)
T 3cs1_A           43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM  122 (219)
T ss_dssp             SHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHTSCCCSSBCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhccCCCCcCCHHHHHHHHHH
Confidence            455677899999999999999999999999988877777777777766543322110    0023678999999987543


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-
Q 010548          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-  345 (507)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-  345 (507)
                      ....                                          ...+-++.+|+.||.|++|.|+.+|+..++... 
T Consensus       123 ~~~~------------------------------------------~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g  160 (219)
T 3cs1_A          123 LCYI------------------------------------------YDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLE  160 (219)
T ss_dssp             HHHH------------------------------------------HHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHH
T ss_pred             Hhcc------------------------------------------chHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence            2110                                          123568899999999999999999999999764 


Q ss_pred             --CCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          346 --PESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       346 --p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                        +..+.....+...++.|.+|.|++++|+.++..
T Consensus       161 ~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~  195 (219)
T 3cs1_A          161 AWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA  195 (219)
T ss_dssp             HHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence              334444455666678899999999999987654

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=98.49  E-value=2.3e-07  Score=81.02  Aligned_cols=145  Identities=15%  Similarity=0.246  Sum_probs=107.2

Q ss_pred             ccHHHHHHHHHHHhhcc-CCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICD-HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d-~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      +.++....++++|..+| .+.+|.++.+|+....+.+ +..++..++..+.+.+..     ..++.|+++.|+.+.....
T Consensus         7 l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~~~   80 (158)
T 2jnf_A            7 LSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVL-GIQQTKSTIRQLIDEFDP-----FGNGDIDFDSFKIIGARFL   80 (158)
T ss_dssp             SCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHT-TCSCSHHHHHHHHHHHCT-----TCCSEECHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCC-----CCCCcCcHHHHHHHHHHHh
Confidence            45566778999999999 9999999999999988774 667788887777766532     2367899999999876543


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~  348 (507)
                      .....                       |              ....+.++.+|+.||.|++|.|+.+|+..++......
T Consensus        81 ~~~~~-----------------------~--------------~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~  123 (158)
T 2jnf_A           81 GEEVN-----------------------P--------------EQMQQELREAFRLYDKEGNGYISTDVMREILAELDET  123 (158)
T ss_dssp             CCCCC-----------------------T--------------TTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTT
T ss_pred             ccccc-----------------------h--------------hhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCc
Confidence            11100                       0              0112358899999999999999999999999865321


Q ss_pred             --CCCCCccccccccCCCCccchHhHHhhhh
Q 010548          349 --PWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       349 --p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                        +.....+...++.|.+|.|++++|+....
T Consensus       124 ~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~  154 (158)
T 2jnf_A          124 LSSEDLDAMIDEIDADGSGTVDFEEFMGVMT  154 (158)
T ss_dssp             CCHHHHHHHHHHHCSSCCSEECSHHHHHHTS
T ss_pred             CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence              22223345567889999999999988653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.48  E-value=1.2e-07  Score=98.76  Aligned_cols=83  Identities=13%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCC--CCC----------------------CC-------CCCccceeEEEEEEcCC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE----------------------NY-------APTTGEQYAVNVVDQPG  469 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~--~~~----------------------~~-------~~t~~~~~~~~~~~~~~  469 (507)
                      ...++|+++|.+++|||||+++|+...  +..                      ..       ....|.......+..  
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~--  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence            456899999999999999999997522  110                      00       011111111112333  


Q ss_pred             CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +..++.+|||+|+++|....  ..+++.+|++|+|||+
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~--~~~~~~aD~~ilVvDa  154 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNM--INGASQADIGVLVISA  154 (467)
T ss_dssp             SSEEEEECCCCC-------------TTSCSEEEEEEEC
T ss_pred             CCeEEEEEECCCcHHHHHHH--HhhcccCCEEEEEEeC
Confidence            35688999999999998766  5778999999999996

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=98.48  E-value=8.8e-08  Score=82.68  Aligned_cols=139  Identities=16%  Similarity=0.162  Sum_probs=99.8

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w  277 (507)
                      ++++|..+|.+.+|.++.+|+....+.. +...+..+++.+...+.    +...++.|+++.|+.+........      
T Consensus         6 l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~~----D~~~~g~i~~~eF~~~~~~~~~~~------   74 (148)
T 1m45_A            6 NKDIFTLFDKKGQGAIAKDSLGDYLRAI-GYNPTNQLVQDIINADS----SLRDASSLTLDQITGLIEVNEKEL------   74 (148)
T ss_dssp             CTTCHHHHCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHC------CC--CCEEEHHHHHHHHHHTHHHH------
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhh----CCCCCCeEcHHHHHHHHHHHHhhc------
Confidence            4678899999999999999999888775 66777777777665441    112367899999999876441000      


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC--CCCCCcc
Q 010548          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES--PWDEAPY  355 (507)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~--p~~~~~~  355 (507)
                         ..                           ......+.++.+|+.||.|++|.|+.+|+..++......  +.....+
T Consensus        75 ---~~---------------------------~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~  124 (148)
T 1m45_A           75 ---DA---------------------------TTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDEL  124 (148)
T ss_dssp             ---HG---------------------------GGCCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred             ---cc---------------------------cccccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence               00                           000113568899999999999999999999999875322  2223445


Q ss_pred             ccccccCCCCccchHhHHhhhh
Q 010548          356 KDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ...++.|.+|.|++++|+..+.
T Consensus       125 ~~~~d~d~dg~i~~~eF~~~~~  146 (148)
T 1m45_A          125 LKGVEVDSNGEIDYKKFIEDVL  146 (148)
T ss_dssp             HTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHHhCCCCCCeEeHHHHHHHHh
Confidence            5667889999999999998764

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=98.47  E-value=4.1e-07  Score=80.85  Aligned_cols=132  Identities=18%  Similarity=0.273  Sum_probs=103.7

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  274 (507)
                      .+.++++|..+|.+.+|.++.+|+....+.....+.+..+++.+.+.+..     ..++.|+++.|+.+...        
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~ef~~~~~~--------   72 (172)
T 2znd_A            6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDR-----ENKAGVNFSEFTGVWKY--------   72 (172)
T ss_dssp             CHHHHHHHHHHCTTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCS-----SSSSEECHHHHHHHHHH--------
T ss_pred             hhHHHHHHHHhCCCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CCCCcCCHHHHHHHHHH--------
Confidence            35678899999999999999999999888765577888888877666532     23678999999988542        


Q ss_pred             chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCC
Q 010548          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDE  352 (507)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~  352 (507)
                                                              .+-++.+|+.||.|++|.|+.+|+..++......+  ...
T Consensus        73 ----------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~  112 (172)
T 2znd_A           73 ----------------------------------------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFH  112 (172)
T ss_dssp             ----------------------------------------HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHH
T ss_pred             ----------------------------------------HHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHH
Confidence                                                    13578899999999999999999999998753221  122


Q ss_pred             CccccccccCCCCccchHhHHhhhhhh
Q 010548          353 APYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ..+...++.|.+|.|++++|+.++...
T Consensus       113 ~~~~~~~d~~~dg~i~~~eF~~~~~~~  139 (172)
T 2znd_A          113 DILIRKFDRQGRGQIAFDDFIQGCIVL  139 (172)
T ss_dssp             HHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            334455678999999999999998765

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.46  E-value=8.3e-08  Score=102.31  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCC----CCccceeEEEEE------Ec-C-----CCeEEEEEEecCCchhhh
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYA----PTTGEQYAVNVV------DQ-P-----GGNKKTLILQEIPEEGVK  486 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~----~t~~~~~~~~~~------~~-~-----~~~~~~~i~Dt~G~~~~~  486 (507)
                      ..+|+++|.+|+|||||++++++..+.....    ++.+..+.....      .. .     .....+.+|||+|++.|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            4699999999999999999999765432211    122211110000      00 0     011258899999999998


Q ss_pred             hhccchhhcccccEEEEEEeC
Q 010548          487 KILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       487 ~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..+  ..+++.||++++|||+
T Consensus        85 ~~~--~r~~~~aD~aILVvDa  103 (594)
T 1g7s_A           85 TLR--KRGGALADLAILIVDI  103 (594)
T ss_dssp             TSB--CSSSBSCSEEEEEEET
T ss_pred             HHH--HHHHhhCCEEEEEEEC
Confidence            877  5678999999999996

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.46  E-value=2.5e-07  Score=102.92  Aligned_cols=85  Identities=18%  Similarity=0.117  Sum_probs=60.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCC----------------C--CCccceeEEEEEE------------cCCC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY----------------A--PTTGEQYAVNVVD------------QPGG  470 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~----------------~--~t~~~~~~~~~~~------------~~~~  470 (507)
                      .+..||+|+|.+|+|||||+++|++.......                .  .|+......-...            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            35679999999999999999999965221111                1  1222111111111            1345


Q ss_pred             eEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       471 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ...+.+|||+|+.+|....  ..+++.+|++|+|||+
T Consensus        97 ~~~i~liDTPG~~df~~~~--~~~l~~aD~ailVvDa  131 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEV--TAALRVTDGALVVVDT  131 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHH--HHHHHTCSEEEEEEET
T ss_pred             CceEEEEECcCchhhHHHH--HHHHHhCCEEEEEEeC
Confidence            7789999999999998776  6889999999999996

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=98.46  E-value=2.7e-07  Score=82.40  Aligned_cols=141  Identities=20%  Similarity=0.281  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ++..+.+++.|..+|.+.+|.++.+|+...... ++...+..++..+.+.+..     ..++.|+++.|+.+....... 
T Consensus         7 ~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~EF~~~~~~~~~~-   79 (179)
T 2f2o_A            7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDA-----DGNGTIDFPEFLTMMARKMKD-   79 (179)
T ss_dssp             CSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhcc-----CCCCCCcHHHHHHHHHHHccC-
Confidence            345677899999999999999999999998876 4667777777777665532     236789999999886643310 


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--  349 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--  349 (507)
                                                              ....+-++.+|+.||.|++|.|+.+|+..++.......  
T Consensus        80 ----------------------------------------~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~  119 (179)
T 2f2o_A           80 ----------------------------------------TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD  119 (179)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCH
T ss_pred             ----------------------------------------cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCH
Confidence                                                    12345688999999999999999999999998764221  


Q ss_pred             CCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          350 WDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .....+...++.|.+|.|++++|+.++.-.
T Consensus       120 ~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  149 (179)
T 2f2o_A          120 EEVDEMIREADIDGDGQVNYEEFVQMMTAK  149 (179)
T ss_dssp             HHHHHHHHHHCTTCSSSEEHHHHHHHSCC-
T ss_pred             HHHHHHHHHcCCCCCCcCcHHHHHHHHHHc
Confidence            112334455678999999999999977544

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=98.45  E-value=3.4e-07  Score=83.16  Aligned_cols=137  Identities=16%  Similarity=0.206  Sum_probs=101.2

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~  270 (507)
                      .++....++++|..+|.+.+|.++.+|+..+.+.. +...+ .+++.+.+.+.   .  ..++.|+++.|+.+....   
T Consensus        47 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~-g~~~~-~~~~~l~~~~D---~--d~~g~i~~~EF~~~~~~~---  116 (191)
T 3k21_A           47 NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKD-GLKLP-YNFDLLLDQID---S--DGSGKIDYTEFIAAALDR---  116 (191)
T ss_dssp             CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCC-TTHHHHHHHHC---T--TCSSSEEHHHHHHHHSCG---
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHc-CCCcH-HHHHHHHHHhC---C--CCCCeEeHHHHHHHHHhh---
Confidence            44567789999999999999999999999998875 44444 66666655552   2  236789999999874100   


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-CCCC
Q 010548          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PESP  349 (507)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-p~~p  349 (507)
                                                              .....+-++.+|+.||.|++|.|+.+|+..++... .+.+
T Consensus       117 ----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~  156 (191)
T 3k21_A          117 ----------------------------------------KQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGN  156 (191)
T ss_dssp             ----------------------------------------GGCCHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSC
T ss_pred             ----------------------------------------hhccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence                                                    00123578899999999999999999999999763 2222


Q ss_pred             CC------CCccccccccCCCCccchHhHHhhhh
Q 010548          350 WD------EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       350 ~~------~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ..      ...+...++.|.+|.|++++|+.++.
T Consensus       157 l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~  190 (191)
T 3k21_A          157 ITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK  190 (191)
T ss_dssp             CCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred             CCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence            21      22345567889999999999998764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.44  E-value=1.1e-07  Score=95.87  Aligned_cols=70  Identities=13%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      +|+++|.+|+|||||+++|+      ....|..  .....+..  +..++.+|||+|+++|....  ...++.+|++++|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~--~~~~~~~~--~~~~i~iiDtPGh~~f~~~~--~~~~~~aD~ailV   90 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSD--ITMYNNDK--EGRNMVFVDAHSYPKTLKSL--ITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESS--SEEEEECS--SSSEEEEEECTTTTTCHHHH--HHHHHTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEE--eeEEEEec--CCeEEEEEECCChHHHHHHH--HHHHHHCCEEEEE
Confidence            89999999999999999998      1112222  22222333  44568999999999986555  5678999999999


Q ss_pred             Ee
Q 010548          505 YD  506 (507)
Q Consensus       505 ~D  506 (507)
                      +|
T Consensus        91 vd   92 (370)
T 2elf_A           91 IP   92 (370)
T ss_dssp             EC
T ss_pred             Ec
Confidence            98

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.43  E-value=1.4e-07  Score=105.56  Aligned_cols=85  Identities=13%  Similarity=0.046  Sum_probs=57.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCC-------CCC-------CCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERP-------FSE-------NYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~  486 (507)
                      ...+||+++|.+++|||||+++|++..       +..       ....+.|+......+.+..+..++.+|||+|+++|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            356899999999999999999998741       100       001122221111122333456788999999999998


Q ss_pred             hhccchhhcccccEEEEEEeC
Q 010548          487 KILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       487 ~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ...  ..+++.+|++|+|||+
T Consensus       374 ~~m--i~gas~AD~aILVVDA  392 (1289)
T 3avx_A          374 KNM--ITGAAQMDGAILVVAA  392 (1289)
T ss_dssp             HHH--HHTSCCCSEEEEEEET
T ss_pred             HHH--HHHHhhCCEEEEEEcC
Confidence            666  6788999999999996

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=98.42  E-value=2.1e-07  Score=79.47  Aligned_cols=131  Identities=16%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             HHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccch
Q 010548          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (507)
Q Consensus       197 ~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~  276 (507)
                      .++++|..+|.+.+|.++.+|+....+.+ +...+..++..+.+         ..++.|+++.|+.+......       
T Consensus         6 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~---------~~~g~i~~~eF~~~~~~~~~-------   68 (140)
T 1ggw_A            6 PYKQAFSLFDRHGTGRIPKTSIGDLLRAC-GQNPTLAEITEIES---------TLPAEVDMEQFLQVLNRPNG-------   68 (140)
T ss_dssp             TTHHHHHHTCSSSSSEECHHHHHHHHHHT-SCCCCHHHHHHHHT---------TSCSSEEHHHHHHHHCTTSS-------
T ss_pred             HHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHh---------CCCCcCcHHHHHHHHHHHhc-------
Confidence            36788999999999999999999988775 55677777766654         34678999999987431110       


Q ss_pred             hHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCCCCc
Q 010548          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWDEAP  354 (507)
Q Consensus       277 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~~~~  354 (507)
                                                      ..++...+-++.+|+.||.|++|.|+.+|+..++....  ..+.....
T Consensus        69 --------------------------------~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~  116 (140)
T 1ggw_A           69 --------------------------------FDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDE  116 (140)
T ss_dssp             --------------------------------SSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHH
T ss_pred             --------------------------------ccCcccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHH
Confidence                                            01112356789999999999999999999999998642  22222233


Q ss_pred             cccccccCCCCccchHhHHhhhh
Q 010548          355 YKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      +...++. .+|.|++++|+.++.
T Consensus       117 ~~~~~d~-~dg~i~~~eF~~~~~  138 (140)
T 1ggw_A          117 LLKGVPV-KDGMVNYHDFVQMIL  138 (140)
T ss_dssp             HHHHTTC-SSCCSTTTHHHHHHH
T ss_pred             HHHhccC-CCCcEeHHHHHHHHh
Confidence            4455667 899999999998764

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=98.40  E-value=2e-07  Score=81.31  Aligned_cols=141  Identities=18%  Similarity=0.211  Sum_probs=104.2

Q ss_pred             cHHHHHHHHHHHhhccC--CCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDH--DMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~--~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      .++..+.++++|..+|.  +.+|.++.+|+....+.. +...+..++..+ ..+     +...++.|+++.|+.+.....
T Consensus         4 s~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l-~~~-----D~~~~g~i~~~eF~~~~~~~~   76 (156)
T 1wdc_C            4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCL-GINPRNEDVFAV-GGT-----HKMGEKSLPFEEFLPAYEGLM   76 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHT-TCCCCHHHHHHT-TCC-----SSTTSCEECHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHc-CCCCCHHHHHHH-Hhh-----CCCCCCeeeHHHHHHHHHHHh
Confidence            34567789999999999  999999999999988774 556677666554 222     222367899999999876443


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~  348 (507)
                      ..                                        .....+.++.+|+.||.|++|.|+.+|+..++......
T Consensus        77 ~~----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~  116 (156)
T 1wdc_C           77 DC----------------------------------------EQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGER  116 (156)
T ss_dssp             TS----------------------------------------CCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSC
T ss_pred             hc----------------------------------------cCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence            11                                        01124568899999999999999999999999875322


Q ss_pred             --CCCCCccccc--cccCCCCccchHhHHhhhhh
Q 010548          349 --PWDEAPYKDA--AETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       349 --p~~~~~~~~~--~~~~~~~~~~~~~~~~~w~~  378 (507)
                        +.....+...  ++.|.+|.|++++|+..+.-
T Consensus       117 ~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  150 (156)
T 1wdc_C          117 LSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA  150 (156)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHhc
Confidence              2223334555  78899999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.40  E-value=3e-07  Score=97.92  Aligned_cols=84  Identities=15%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCC----------C---CCCccceeEEE--EEEc---CCCeEEEEEEecCCch
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN----------Y---APTTGEQYAVN--VVDQ---PGGNKKTLILQEIPEE  483 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~----------~---~~t~~~~~~~~--~~~~---~~~~~~~~i~Dt~G~~  483 (507)
                      +..+|+++|.+++|||||+++|+...-...          +   ....|......  .+.+   ++....+.+|||+|+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            357899999999999999999986321110          0   00111111111  1211   4456789999999999


Q ss_pred             hhhhhccchhhcccccEEEEEEeC
Q 010548          484 GVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .|....  ..+++.||++++|+|+
T Consensus        83 dF~~ev--~~~l~~aD~aILVVDa  104 (599)
T 3cb4_D           83 DFSYEV--SRSLAACEGALLVVDA  104 (599)
T ss_dssp             GGHHHH--HHHHHHCSEEEEEEET
T ss_pred             HHHHHH--HHHHHHCCEEEEEEEC
Confidence            998776  6789999999999996

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.40  E-value=5.3e-07  Score=86.66  Aligned_cols=114  Identities=20%  Similarity=0.233  Sum_probs=66.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCCCCCeeeCCccc--CCceEEEEEeCCCCccchh------
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK---------VPPVHAPTRLPPDFY--PDRVPVTIIDTSSSLENKG------   74 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~---------~~~~~~~~t~~~~~~--~~~~~~~i~Dt~G~~~~~~------   74 (507)
                      .++++|+|++|+|||||+|.|++......         ++.......+...+.  .-...+.++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999997542211         111000001111111  1124689999998642110      


Q ss_pred             hhH----------------------HhhccCCEEEEEEeCC-ChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           75 KLN----------------------EELKRADAVVLTYACN-QQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        75 ~~~----------------------~~~~~ad~il~V~D~~-~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      ...                      ..+..+++.++++|.. .+.+..+..  ++..+++.   +++|+|.||+|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~--~l~~L~~~---~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE--FMKHLSKV---VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH--HHHHHHTT---SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH--HHHHHHhc---CcEEEEEeccccCCH
Confidence            000                      1133468899999855 444444432  56666553   899999999998653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.39  E-value=3.7e-07  Score=92.12  Aligned_cols=83  Identities=12%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCC-CCCccceeEEEEEEcCCC---------------eEEEEEEecCCchhh-
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGV-  485 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~-  485 (507)
                      ..+|++||.||||||||+|++++....... .|..+.......+.+++.               ...+.+||++|.... 
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            479999999999999999999998763333 344344444445555531               135789999995432 


Q ss_pred             ------hhhccchhhcccccEEEEEEeC
Q 010548          486 ------KKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       486 ------~~~~~~~~~~~~ad~vilv~D~  507 (507)
                            ....  ..+++.+|+++.|+|+
T Consensus       100 s~~e~L~~~f--l~~ir~~d~il~Vvd~  125 (392)
T 1ni3_A          100 STGVGLGNAF--LSHVRAVDAIYQVVRA  125 (392)
T ss_dssp             CSSSSSCHHH--HHHHTTCSEEEEEEEC
T ss_pred             cHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence                  1122  3567899999999985

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=98.39  E-value=1.3e-07  Score=85.48  Aligned_cols=141  Identities=21%  Similarity=0.166  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC----------CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHH
Q 010548          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA----------PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLF  262 (507)
Q Consensus       193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~----------~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~  262 (507)
                      +....+.++|..+|.+.+|.++.+|+......++..          .....+++.+.+.+     +...++.|+++.|+.
T Consensus        37 ~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----D~d~~g~i~~~ef~~  111 (191)
T 3khe_A           37 EETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSV-----DFDRNGYIEYSEFVT  111 (191)
T ss_dssp             TTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHT-----CTTCSSSEEHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHh-----CCCCCCcCCHHHHHH
Confidence            334678899999999999999999999988876322          22223333332222     222367899999998


Q ss_pred             HHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhh
Q 010548          263 LHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF  342 (507)
Q Consensus       263 l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f  342 (507)
                      +.....                                          .....+.+..+|+.+|.|++|.|+.+|+..++
T Consensus       112 ~~~~~~------------------------------------------~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l  149 (191)
T 3khe_A          112 VCMDKQ------------------------------------------LLLSRERLLAAFQQFDSDGSGKITNEELGRLF  149 (191)
T ss_dssp             HHSCHH------------------------------------------HHCCHHHHHHHHHHHCTTCSSEECHHHHHHHT
T ss_pred             HHHHhc------------------------------------------ccchHHHHHHHHHHHCCCCcCcCCHHHHHHHH
Confidence            743110                                          01123568899999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          343 LTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       343 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      ...+..+.....+...++.|.+|.|++++|+..|.-+.
T Consensus       150 ~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~  187 (191)
T 3khe_A          150 GVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKIC  187 (191)
T ss_dssp             TSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            93222222233345567889999999999999887654

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=98.39  E-value=3.8e-07  Score=93.26  Aligned_cols=143  Identities=20%  Similarity=0.301  Sum_probs=105.8

Q ss_pred             hcccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          188 QTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      ..+.+...+.++++|..+|.+.+|.++.+|+...+.. ++..++..+++.+.+.+.     ...++.|+++.|+.+....
T Consensus       304 ~~ls~eei~el~~~F~~fD~D~dG~Is~~EL~~~L~~-lg~~~s~eel~~Lf~~~D-----~DgdG~IsfeEFl~ll~~~  377 (450)
T 3sg6_A          304 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVD-----ADGNGTIDFPEFLTMMARK  377 (450)
T ss_dssp             -CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHTTC-----TTSSSSEEHHHHHHHHHC-
T ss_pred             ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHHhc-----cCCCCcccHHHHHHHHHhh
Confidence            3455667789999999999999999999999999887 456677777766655442     2236789999999886421


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                      ..                                         .....+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus       378 ~~-----------------------------------------~~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~  416 (450)
T 3sg6_A          378 MK-----------------------------------------DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE  416 (450)
T ss_dssp             ----------------------------------------------CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTC
T ss_pred             cc-----------------------------------------ccchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCC
Confidence            10                                         0112356889999999999999999999999987532


Q ss_pred             --CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          348 --SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       348 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                        .......+...++.|.+|.|++++|++++.
T Consensus       417 ~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~  448 (450)
T 3sg6_A          417 KLTDEEVDEMIREADIDGDGQVNYEEFVQMMT  448 (450)
T ss_dssp             CCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence              222223345556789999999999998764

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=98.38  E-value=4.8e-07  Score=81.22  Aligned_cols=135  Identities=13%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ++....++++|..+|.+.+|.++.+|+........   ..+.+++.+...+   ..+  .++.|+++.|+.+....    
T Consensus        35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g---~~~~~~~~~~~~~---D~d--~~g~i~~~Ef~~~~~~~----  102 (180)
T 3mse_B           35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG---IKKWDINRILQAL---DIN--DRGNITYTEFMAGCYRW----  102 (180)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT---CCHHHHHHHHHHH---CTT--CCSEECHHHHHHHHSCC----
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcC---CCHHHHHHHHHHh---CCC--CCCcCcHHHHHHHHHhc----
Confidence            55678899999999999999999999999988653   2345555544444   222  36789999999763300    


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD  351 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~  351 (507)
                                               .              ....+-++.+|+.||.|++|.|+.+|+..++...+..+..
T Consensus       103 -------------------------~--------------~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~  143 (180)
T 3mse_B          103 -------------------------K--------------NIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNND  143 (180)
T ss_dssp             -------------------------T--------------TC--CHHHHHHHHHCTTCSSCBCHHHHHHHTTTSSCCHHH
T ss_pred             -------------------------c--------------cCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHcCCCCCHHH
Confidence                                     0              0002468899999999999999999999999843333322


Q ss_pred             CCccccccccCCC--------CccchHhHHhhhh
Q 010548          352 EAPYKDAAETTAL--------GNLTLKGFVSKWA  377 (507)
Q Consensus       352 ~~~~~~~~~~~~~--------~~~~~~~~~~~w~  377 (507)
                      ...+...++.|.+        |.|++++|+.+..
T Consensus       144 ~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~  177 (180)
T 3mse_B          144 IDNFFLSVHSIKKGIPREHIINKISFQEFKDYML  177 (180)
T ss_dssp             HHHHHHHHHTC---------CCCBCHHHHHHHHH
T ss_pred             HHHHHHHhhhccCcccccccCCeeeHHHHHHHHH
Confidence            3344555677777        9999999998653

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=98.38  E-value=7.3e-07  Score=80.68  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=97.7

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHH----hHhcCCCCCHHHHH--HHHHHHHhhccCCccCCCcchhhHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQ----VKCFNAPLQPAEIV--GVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~----~~~~~~~l~~~~~~--~l~~~i~~~~~~~~~~~~~~~~~f~~l  263 (507)
                      ..++..+.++++|..+|.+.+|.++.+|+....    .+.++...+..++.  .+...+.....  ..++.|+++.|+.+
T Consensus        14 ~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~~~~~~~~~~~~l~~~~D~--d~~g~i~~~EF~~~   91 (195)
T 1qv0_A           14 DNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGM--EYGKEIAFPQFLDG   91 (195)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTC--CTTCCBCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCC--CCCceEcHHHHHHH
Confidence            356777889999999999999999999998422    22345544444211  23333333222  23678999999998


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (507)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~  343 (507)
                      ..........  .|.                  +       .    -...-..++..+|+.||.|++|.|+.+|+..++.
T Consensus        92 ~~~~~~~~~~--~~~------------------~-------~----~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~  140 (195)
T 1qv0_A           92 WKQLATSELK--KWA------------------R-------N----EPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK  140 (195)
T ss_dssp             HHHHHHHHHH--HHH------------------T-------T----CCCHHHHHHHHHHHHTC----CEECHHHHHHHHH
T ss_pred             HHHHHhhhhh--ccc------------------c-------c----HHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            7765432110  000                  0       0    0001123455999999999999999999999998


Q ss_pred             cCCC--CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          344 TAPE--SPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       344 ~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ....  .+.....+...++.|.+|.|++++|+..+.-
T Consensus       141 ~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  177 (195)
T 1qv0_A          141 ISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG  177 (195)
T ss_dssp             HHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            6532  1222334555678899999999999987753

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=98.37  E-value=1.1e-06  Score=78.04  Aligned_cols=130  Identities=18%  Similarity=0.223  Sum_probs=100.2

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcC-------CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFN-------APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~-------~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      .+.++++|..+| +.+|.++.+|+....+..++       ..++..+++.+.+.+..     ..++.|+++.|+.+... 
T Consensus         3 ~~~l~~~F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~-   75 (173)
T 1alv_A            3 VRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDS-----DTTGKLGFEEFKYLWNN-   75 (173)
T ss_dssp             HHHHHHHHHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcC-----CCCCccCHHHHHHHHHH-
Confidence            456888999999 99999999999999999865       66777777777766532     23567999999988652 


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                                                                     .+.++.+|+.||.|++|.|+.+|+..++.....
T Consensus        76 -----------------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~  108 (173)
T 1alv_A           76 -----------------------------------------------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGF  108 (173)
T ss_dssp             -----------------------------------------------HHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTC
T ss_pred             -----------------------------------------------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCC
Confidence                                                           145788999999999999999999999986532


Q ss_pred             CC--CCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          348 SP--WDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       348 ~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .+  .....+...++ +.+|.|++++|+.++...
T Consensus       109 ~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~~  141 (173)
T 1alv_A          109 HLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVRL  141 (173)
T ss_dssp             CCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH
Confidence            22  11222334445 889999999999988764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.37  E-value=6.1e-07  Score=95.41  Aligned_cols=84  Identities=20%  Similarity=0.213  Sum_probs=54.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCC-----------C----C--CCccceeEEEEEE-cCCCeEEEEEEecCCch
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-----------Y----A--PTTGEQYAVNVVD-QPGGNKKTLILQEIPEE  483 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-----------~----~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~  483 (507)
                      +..+|+++|.+++|||||+++|+...-...           .    .  .|.......-... .++....+.+|||+|+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            457999999999999999999986311100           0    0  0111111110111 13456788999999999


Q ss_pred             hhhhhccchhhcccccEEEEEEeC
Q 010548          484 GVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       484 ~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .|....  ..+++.||++++|||+
T Consensus        85 dF~~ev--~r~l~~aD~aILVVDa  106 (600)
T 2ywe_A           85 DFSYEV--SRALAACEGALLLIDA  106 (600)
T ss_dssp             GGHHHH--HHHHHTCSEEEEEEET
T ss_pred             hHHHHH--HHHHHhCCEEEEEEEC
Confidence            998766  5788999999999996

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.36  E-value=9e-07  Score=87.41  Aligned_cols=36  Identities=14%  Similarity=0.125  Sum_probs=33.4

Q ss_pred             CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +..++.+|||+|++++++++  ..||++++++|+|||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w--~~yy~~a~~iIfV~di  194 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXW--VSFFSDVDCAIFVTSL  194 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHH--HTTSCSCSEEEEEEEG
T ss_pred             eeeeeccccCCCcccccccH--HHHhccCCEEEEEEEC
Confidence            56789999999999999999  7899999999999985

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=98.36  E-value=2.8e-07  Score=80.03  Aligned_cols=137  Identities=18%  Similarity=0.217  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (507)
Q Consensus       193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~  272 (507)
                      +..+.++++|..+|.+.+|.++.+|+. ........    ..++.+.+.+.   .+  .++.|+++.|+.+...+..   
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~~el~-~l~~~~~~----~~~~~~~~~~D---~~--~~g~i~~~ef~~~~~~~~~---   69 (155)
T 3ll8_B            3 DEIKRLGKRFKKLDLDNSGSLSVEEFM-SLPELQQN----PLVQRVIDIFD---TD--GNGEVDFKEFIEGVSQFSV---   69 (155)
T ss_dssp             HHHHHHHHHHHHHCTTCSSSBCHHHHT-TSGGGTTC----TTHHHHHHHHC---TT--CSSSBCHHHHHHHHGGGCS---
T ss_pred             HHHHHHHHHHHHhCcCCCCeEcHHHHH-Hhhccccc----hHHHHHHHHHC---CC--CCCcCcHHHHHHHHHHHcc---
Confidence            345678999999999999999999993 32222211    24444444442   22  3678999999988542110   


Q ss_pred             ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC-
Q 010548          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD-  351 (507)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~-  351 (507)
                                                            .....+.++.+|+.+|.|++|.|+.+|+..++....+.+.. 
T Consensus        70 --------------------------------------~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~  111 (155)
T 3ll8_B           70 --------------------------------------KGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKD  111 (155)
T ss_dssp             --------------------------------------SCCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCH
T ss_pred             --------------------------------------cCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCH
Confidence                                                  11234678999999999999999999999999863222222 


Q ss_pred             --CCccccc----cccCCCCccchHhHHhhhhhhh
Q 010548          352 --EAPYKDA----AETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       352 --~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                        ...+...    ++.|.+|.|++++|+..+..+.
T Consensus       112 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~  146 (155)
T 3ll8_B          112 TQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLD  146 (155)
T ss_dssp             HHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccC
Confidence              2233444    7889999999999999877654

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=98.35  E-value=3e-07  Score=83.35  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=100.4

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~  275 (507)
                      +.++++|..+|.+.+|.++.+|+....... +..++..++..+.+.+..     ..++.|+++.|+.+...+        
T Consensus        10 ~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~-g~~~~~~~~~~l~~~~D~-----d~dG~I~~~EF~~~~~~~--------   75 (188)
T 1s6i_A           10 GGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADI-----DKSGTIDYGEFIAATVHL--------   75 (188)
T ss_dssp             CSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCT-----TCSSEECHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHcCC-----CCCCeEeHHHHHHHHHHH--------
Confidence            457889999999999999999999888775 567777777766655532     235679999999874210        


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCcc
Q 010548          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPY  355 (507)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~  355 (507)
                              .        .  .+      +          .+.++.+|+.||.|++|.|+.+|+..++......+.....+
T Consensus        76 --------~--------~--~~------~----------~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~  121 (188)
T 1s6i_A           76 --------N--------K--LE------R----------EENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDDM  121 (188)
T ss_dssp             --------S--------S--SC------C----------CCSTHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHHH
T ss_pred             --------h--------c--cC------H----------HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHH
Confidence                    0        0  00      0          12367899999999999999999999998765444434445


Q ss_pred             ccccccCCCCccchHhHHhhhh
Q 010548          356 KDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ...++.|.+|.|++++|+..+.
T Consensus       122 ~~~~D~d~dG~Is~~EF~~~~~  143 (188)
T 1s6i_A          122 IKEIDQDNDGQIDYGEFAAMMR  143 (188)
T ss_dssp             HHHHCSSSSSEEETTHHHHTTS
T ss_pred             HHHHCCCCCCcEeHHHHHHHHH
Confidence            5667889999999999998654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.35  E-value=1.2e-06  Score=86.08  Aligned_cols=36  Identities=3%  Similarity=0.002  Sum_probs=33.0

Q ss_pred             CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +..++.+|||+|++++++++  ..||++++++|+|||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w--~~yf~~~~~iIfV~dl  200 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKW--IHCFENVTSIMFLVAL  200 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTG--GGGCSSCSEEEEEEEG
T ss_pred             eceeeEEEEcCCchhHHHHH--HHHhCCCCEEEEEEEC
Confidence            46889999999999999999  7899999999999963

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.34  E-value=5e-07  Score=98.36  Aligned_cols=83  Identities=12%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhc--CCCCC---CCC-------------CCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLE--RPFSE---NYA-------------PTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~--~~~~~---~~~-------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~  482 (507)
                      .+..+|+++|.+|+|||||+++|+.  +.+..   +..             ...+.......+..  +..++.+|||+|.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~--~~~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW--EGHRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE--TTEEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE--CCeeEEEEECcCC
Confidence            3568999999999999999999995  22210   000             01111111112233  3578899999999


Q ss_pred             hhhhhhccchhhcccccEEEEEEeC
Q 010548          483 EGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       483 ~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..|....  ..+++.+|++++|+|+
T Consensus        86 ~df~~~~--~~~l~~aD~~llVvDa  108 (693)
T 2xex_A           86 VDFTVEV--ERSLRVLDGAVTVLDA  108 (693)
T ss_dssp             SSCCHHH--HHHHHHCSEEEEEEET
T ss_pred             cchHHHH--HHHHHHCCEEEEEECC
Confidence            9887766  6789999999999996

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.34  E-value=2.8e-07  Score=100.37  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=56.3

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCC--CCC------------------CCCCCccceeEEEEEEcCCCeEEEEEEecC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERP--FSE------------------NYAPTTGEQYAVNVVDQPGGNKKTLILQEI  480 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~  480 (507)
                      .+..+|+|+|.+|+|||||+++|+...  +..                  ...+|....  ...+..  +..++.+|||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~liDTP   85 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINIIDTP   85 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEECCC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEEECc
Confidence            356899999999999999999998421  100                  011122211  112222  45788999999


Q ss_pred             CchhhhhhccchhhcccccEEEEEEeC
Q 010548          481 PEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       481 G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      |+..|....  ..+++.+|++++|+|+
T Consensus        86 G~~df~~~~--~~~l~~aD~~ilVvDa  110 (691)
T 1dar_A           86 GHVDFTIEV--ERSMRVLDGAIVVFDS  110 (691)
T ss_dssp             SSTTCHHHH--HHHHHHCSEEEEEEET
T ss_pred             CccchHHHH--HHHHHHCCEEEEEEEC
Confidence            999888766  6789999999999996

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=98.34  E-value=6e-07  Score=80.90  Aligned_cols=154  Identities=14%  Similarity=0.122  Sum_probs=100.6

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHH-----HHhHhcCCCCCHHHHH--HHHHHHHhhccCCccCCCcchhhHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNE-----FQVKCFNAPLQPAEIV--GVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~-----~~~~~~~~~l~~~~~~--~l~~~i~~~~~~~~~~~~~~~~~f~~l  263 (507)
                      .++..+.++++|..+|.+.+|.++.+|+..     .. +.++...+..++.  .+...+.....  ..++.|+++.|+.+
T Consensus        11 ~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l-~~~g~~~~~~~~~~~~~~~l~~~~D~--d~~g~i~~~EF~~~   87 (191)
T 1uhk_A           11 NPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVI-NNLGATPEQAKRHKDAVEAFFGGAGM--KYGVETDWPAYIEG   87 (191)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHTTC--CTTCEEEHHHHHHH
T ss_pred             CHHHHHHHHHHHhhccCCCCCcCcHHHHHHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHhCc--CCCCcCcHHHHHHH
Confidence            456677899999999999999999999983     33 3344444444211  23333333322  23668999999998


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (507)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~  343 (507)
                      ...........  +.                  +     .      -...-..++..+|+.||.|++|.|+.+|+..++.
T Consensus        88 ~~~~~~~~~~~--~~------------------~-----~------~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~  136 (191)
T 1uhk_A           88 WKKLATDELEK--YA------------------K-----N------EPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTK  136 (191)
T ss_dssp             HHHHHHHHHHH--HH------------------T-----T------CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred             HHHHhcchhhh--hh------------------h-----h------hHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            77554221000  00                  0     0      0000123455999999999999999999999997


Q ss_pred             cCCC--CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          344 TAPE--SPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       344 ~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ....  .+.....+...++.|.+|.|++++|+..+.-
T Consensus       137 ~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~  173 (191)
T 1uhk_A          137 AAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLG  173 (191)
T ss_dssp             HHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            6432  2222334555678899999999999998764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.33  E-value=5.6e-07  Score=97.59  Aligned_cols=84  Identities=13%  Similarity=0.137  Sum_probs=58.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCC----------------ccceeEEEEEEcCCCeEEEEEEecCCchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPT----------------TGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~  485 (507)
                      ...+|+++|.+|+|||||++++++.........+                .+..+..+...+..+...+.+|||+|+.+|
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            4568999999999999999999954332111100                011111222223335678899999999998


Q ss_pred             hhhccchhhcccccEEEEEEeC
Q 010548          486 KKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       486 ~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ....  ..+++.+|++++|+|+
T Consensus        88 ~~~~--~~~l~~ad~~ilVvD~  107 (665)
T 2dy1_A           88 VGEI--RGALEAADAALVAVSA  107 (665)
T ss_dssp             HHHH--HHHHHHCSEEEEEEET
T ss_pred             HHHH--HHHHhhcCcEEEEEcC
Confidence            8766  6889999999999995

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.33  E-value=6.4e-07  Score=89.72  Aligned_cols=28  Identities=36%  Similarity=0.595  Sum_probs=25.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFS  449 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~  449 (507)
                      ...+|+|+|++|||||||+|+|++.++.
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3469999999999999999999999885

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=98.31  E-value=5.8e-07  Score=82.15  Aligned_cols=154  Identities=19%  Similarity=0.249  Sum_probs=102.5

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.+...+.++++|..+|.+.+|.++.+|+... .. ++....      +..++.....+  .++.|+++.|+.+......
T Consensus        23 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~-lg~~~~------~~~l~~~~D~d--~dg~i~~~EF~~~~~~~~~   92 (202)
T 2bec_A           23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GA-LAVNPL------GDRIIESFFPD--GSQRVDFPGFVRVLAHFRP   92 (202)
T ss_dssp             CCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HH-HHHSTT------HHHHHHTTSCS--SCCCCCHHHHHHHHGGGSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-Hh-cCCCcc------HHHHHHHhCCC--CCCcCcHHHHHHHHHHhcc
Confidence            45667788999999999999999999999988 33 332222      33344433222  3678999999988543221


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p  349 (507)
                      ..                     ....| ...  . ..........+.++.+|+.||.|++|.|+.+|+..++....+.+
T Consensus        93 ~~---------------------~~~~~-~~~--~-~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~  147 (202)
T 2bec_A           93 VE---------------------DEDTE-TQD--P-KKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQ  147 (202)
T ss_dssp             CC---------------------HHHHC---------CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSC
T ss_pred             cc---------------------hhccc-ccc--c-ccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCC
Confidence            00                     00001 000  0 01123445678899999999999999999999999998763333


Q ss_pred             CCC---Cccccc----cccCCCCccchHhHHhhhhh
Q 010548          350 WDE---APYKDA----AETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       350 ~~~---~~~~~~----~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ...   ..+...    ++.|.+|.|++++|+..+..
T Consensus       148 ~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~  183 (202)
T 2bec_A          148 VTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK  183 (202)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence            332   223444    78899999999999987654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.31  E-value=1e-06  Score=96.07  Aligned_cols=84  Identities=11%  Similarity=-0.001  Sum_probs=57.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCC--CCCC-----------C-----CCCccceeEEEEEEcC-----CCeEEEEEEe
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERP--FSEN-----------Y-----APTTGEQYAVNVVDQP-----GGNKKTLILQ  478 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~--~~~~-----------~-----~~t~~~~~~~~~~~~~-----~~~~~~~i~D  478 (507)
                      +..+|+|+|.+|+|||||+++|+...  +...           +     ....+.......+.+.     +....+.+||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            45799999999999999999998532  1110           0     0111111111122222     2337889999


Q ss_pred             cCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          479 EIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       479 t~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      |+|+..|....  ..+++.||++|+|+|+
T Consensus        89 TPG~~df~~~~--~~~l~~aD~aIlVvDa  115 (704)
T 2rdo_7           89 TPGHVDFTIEV--ERSMRVLDGAVMVYCA  115 (704)
T ss_pred             CCCccchHHHH--HHHHHHCCEEEEEEeC
Confidence            99999988766  6789999999999996

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=98.31  E-value=3.7e-07  Score=78.64  Aligned_cols=129  Identities=14%  Similarity=0.155  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhhccCCC-CCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548          194 CVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~-d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~  272 (507)
                      ..+.++++|..+|.+. +|.++.+|+....+.. +...+..++..+...+...         |+++.|+.+.......  
T Consensus        12 ~~~~l~~~F~~~D~d~~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~---------i~~~eF~~~~~~~~~~--   79 (146)
T 2qac_A           12 EKVDESDVRIYFNEKSSGGKISIDNASYNARKL-GLAPSSIDEKKIKELYGDN---------LTYEQYLEYLSICVHD--   79 (146)
T ss_dssp             HHSCHHHHHHHHHHHCBTTBEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHCSE---------ECHHHHHHHHHHTCCT--
T ss_pred             HHHHHHHHHHHhCccCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCC---------CCHHHHHHHHHHHhcC--
Confidence            3445788999999999 9999999999888764 6677887777776655321         9999999886522100  


Q ss_pred             ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC-
Q 010548          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD-  351 (507)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~-  351 (507)
                                                             ....+.++..|+.||.|++|.|+.+|+..++.... .+.. 
T Consensus        80 ---------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~~~~  119 (146)
T 2qac_A           80 ---------------------------------------KDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWG-DALTD  119 (146)
T ss_dssp             ---------------------------------------TCCHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSS-SCCCH
T ss_pred             ---------------------------------------cchHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhC-CCCCH
Confidence                                                   01245788999999999999999999999998753 2222 


Q ss_pred             --CCccccccccCCCCccchHhHHhhh
Q 010548          352 --EAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       352 --~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                        ...+...+  |.+|.|++++|+.++
T Consensus       120 ~~~~~~~~~~--d~dg~i~~~eF~~~l  144 (146)
T 2qac_A          120 QEAIDALNAF--SSEDNIDYKLFCEDI  144 (146)
T ss_dssp             HHHHHHHHHH--CSSSEEEHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCCcCcHHHHHHHH
Confidence              22223333  889999999999865

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.29  E-value=4.1e-07  Score=88.06  Aligned_cols=59  Identities=19%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~   70 (507)
                      ...++|+++|.||||||||+|+|.+...  ...+..+++|........+..+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~--~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNI--AKTGDRPGITTSQQWVKVGKELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCC--C------------CCEEETTTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCce--eecCCCCCeeeeeEEEEeCCCEEEEECcCcC
Confidence            3568999999999999999999998763  2233334445322211113368999999975

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=98.28  E-value=1e-06  Score=92.58  Aligned_cols=142  Identities=23%  Similarity=0.177  Sum_probs=104.4

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhc-------CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF-------NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~-------~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l  263 (507)
                      .++..+.++++|..+|.|.+|.++.+|+..+.....       +......+++.+.+.+.   .+  .++.|+++.|+.+
T Consensus       350 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D---~d--~dG~I~~~EF~~~  424 (504)
T 3q5i_A          350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVD---FD--KNGYIEYSEFISV  424 (504)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHC---TT--CSSSEEHHHHHHH
T ss_pred             cHHHHHHHHHHHHeeCCCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhC---CC--CCCcEeHHHHHHH
Confidence            345567789999999999999999999998887753       33455666666655553   22  3678999999987


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (507)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~  343 (507)
                      ......                                          ....+-++.+|+.||.|+||.|+.+|+..++.
T Consensus       425 ~~~~~~------------------------------------------~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~  462 (504)
T 3q5i_A          425 CMDKQI------------------------------------------LFSEERLRRAFNLFDTDKSGKITKEELANLFG  462 (504)
T ss_dssp             HSCHHH------------------------------------------HTCHHHHHHHHHHHCTTCCSEECHHHHHHHTT
T ss_pred             HHhhhc------------------------------------------ccCHHHHHHHHHHhcCCCCCcCcHHHHHHHHh
Confidence            431100                                          01135688999999999999999999999998


Q ss_pred             cCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       344 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ..+......+.+...++.|.+|.|++++|+.+..-+
T Consensus       463 ~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  498 (504)
T 3q5i_A          463 LTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI  498 (504)
T ss_dssp             CSCCCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            733222223445667789999999999999876543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=98.27  E-value=1.3e-06  Score=91.58  Aligned_cols=142  Identities=18%  Similarity=0.186  Sum_probs=102.3

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-------CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-------PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-------~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l  263 (507)
                      .+...+.++++|..+|.|.+|.++.+|+..........       .....+++.+.+.+   ..+  .++.|+++.|+.+
T Consensus       341 ~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---D~d--~~G~I~~~EF~~~  415 (494)
T 3lij_A          341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA---DFD--RNGYIDYSEFVTV  415 (494)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHH---CTT--CSSSEEHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHh---CCC--CCCcCcHHHHHHH
Confidence            45566788999999999999999999999888876443       22344444444433   223  3678999999988


Q ss_pred             HHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc
Q 010548          264 HALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL  343 (507)
Q Consensus       264 ~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~  343 (507)
                      ......                                          ....+-++..|+.||+|+||.|+.+|+..++.
T Consensus       416 ~~~~~~------------------------------------------~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~  453 (494)
T 3lij_A          416 AMDRKS------------------------------------------LLSKDKLESAFQKFDQDGNGKISVDELASVFG  453 (494)
T ss_dssp             HSCHHH------------------------------------------HTCHHHHHHHHHHHCTTCSSEECHHHHHHHC-
T ss_pred             HHhhhc------------------------------------------cccHHHHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence            431110                                          01135688999999999999999999999998


Q ss_pred             cCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          344 TAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       344 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ..+........+...++.|.+|.|++++|+.+..-+
T Consensus       454 ~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  489 (494)
T 3lij_A          454 LDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL  489 (494)
T ss_dssp             CCSCCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhh
Confidence            633333333446667889999999999999877654

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=98.26  E-value=1.3e-07  Score=81.97  Aligned_cols=142  Identities=17%  Similarity=0.190  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ++..+.++++|..+|.+.+|.++.+|+....+.+ +...+..++..+...+.   .+...++.|+++.|+.+........
T Consensus         6 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d---~~~~~~g~i~~~eF~~~~~~~~~~~   81 (151)
T 1w7j_B            6 KDQLEEFKEAFELFDRVGDGKILYSQCGDVMRAL-GQNPTNAEVLKVLGNPK---SDELKSRRVDFETFLPMLQAVAKNR   81 (151)
T ss_dssp             -----CHHHHHHHHCCSSSSEEESTTHHHHHHHT-TCCCCHHHHHHHTTCCC---HHHHTTCEEEHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhC---cCcCCCCcCcHHHHHHHHHHHhccC
Confidence            3445668899999999999999999999988864 66677766655543321   1111367899999998866432100


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CC
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SP  349 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p  349 (507)
                                                             .+...+-++.+|+.||.|++|.|+.+|+..++.....  .+
T Consensus        82 ---------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~  122 (151)
T 1w7j_B           82 ---------------------------------------GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTE  122 (151)
T ss_dssp             ---------------------------------------------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCH
T ss_pred             ---------------------------------------CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCH
Confidence                                                   0112234678999999999999999999999987632  22


Q ss_pred             CCCCccccccccCCCCccchHhHHhhhh
Q 010548          350 WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .....+...++ |.+|.|++++|+..+.
T Consensus       123 ~~~~~~~~~~d-~~dg~i~~~eF~~~~~  149 (151)
T 1w7j_B          123 EEVETVLAGHE-DSNGCINYEAFLKHIL  149 (151)
T ss_dssp             HHHHHHHTTCC-CTTSEEEHHHHHHHTC
T ss_pred             HHHHHHHHhcc-CCCCeEeHHHHHHHHh
Confidence            22334556677 9999999999998753

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=98.24  E-value=5.5e-06  Score=73.07  Aligned_cols=125  Identities=16%  Similarity=0.170  Sum_probs=95.2

Q ss_pred             HHHhhccCCCCCccChhhhHHHHhHhcC----CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548          200 RIFIICDHDMDGALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (507)
Q Consensus       200 ~~~~~~d~~~d~~l~~~el~~~~~~~~~----~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~  275 (507)
                      +.|..+|.+.+|.++.+|+....+.+..    .+.+..+++.+.+.+..     ..++.|+++.|+.+...         
T Consensus         5 ~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~---------   70 (167)
T 1gjy_A            5 YGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDR-----DMSGTMGFNEFKELWAV---------   70 (167)
T ss_dssp             HHHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCT-----TCCSCBCHHHHHHHHHH---------
T ss_pred             HHHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCC-----CCCCcCCHHHHHHHHHH---------
Confidence            4577889999999999999999888654    26778888777766532     23678999999998652         


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCC
Q 010548          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEA  353 (507)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~  353 (507)
                                                             .+.++.+|+.||.|++|.|+.+|+..++......+  ....
T Consensus        71 ---------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~  111 (167)
T 1gjy_A           71 ---------------------------------------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVN  111 (167)
T ss_dssp             ---------------------------------------HHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHH
T ss_pred             ---------------------------------------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHH
Confidence                                                   14678899999999999999999999998753322  1122


Q ss_pred             ccccccccCCCCccchHhHHhhhhhh
Q 010548          354 PYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .+...+  +.+|.|++++|+.++...
T Consensus       112 ~~~~~~--d~dg~i~~~eF~~~~~~~  135 (167)
T 1gjy_A          112 SIAKRY--STSGKITFDDYIACCVKL  135 (167)
T ss_dssp             HHHHHT--CBTTBEEHHHHHHHHHHH
T ss_pred             HHHHHh--CcCCcCcHHHHHHHHHHH
Confidence            222333  789999999999988765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.19  E-value=1.3e-06  Score=89.55  Aligned_cols=111  Identities=21%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC------CCC--C-C-C-CC---------------CCCC--ee-eCCcc------cC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATE------SVP--E-K-V-PP---------------VHAP--TR-LPPDF------YP   56 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~------~~~--~-~-~-~~---------------~~~~--~t-~~~~~------~~   56 (507)
                      ...|+|+|.+||||||+++.|...      +..  . . . +.               ..+.  .+ -+..+      ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            357999999999999999999762      110  0 0 0 00               0000  00 00001      02


Q ss_pred             CceEEEEEeCCCCccchh-hhH---H--hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCC-c-EEEEEecccCC
Q 010548           57 DRVPVTIIDTSSSLENKG-KLN---E--ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKV-P-IIVAGCKLDLR  128 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~-~~~---~--~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~-p-iilv~NK~Dl~  128 (507)
                      .++.+.|+||||...... ...   .  .+..+|.+++|+|+..+..   ... ....+.   ... | ..+|.||+|..
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK---EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH---TTSCSCEEEEEECSSSC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh---hcccCCeEEEEeCCCCc
Confidence            567899999999764322 111   1  1236899999999876642   111 222222   235 6 88999999975


Q ss_pred             C
Q 010548          129 G  129 (507)
Q Consensus       129 ~  129 (507)
                      .
T Consensus       252 ~  252 (432)
T 2v3c_C          252 A  252 (432)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=98.18  E-value=2.3e-06  Score=89.54  Aligned_cols=141  Identities=18%  Similarity=0.191  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCC----------HHHHHHHHHHHHhhccCCccCCCcchh
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQ----------PAEIVGVKRVVQEKQHDGVNDLGLTLS  258 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~----------~~~~~~l~~~i~~~~~~~~~~~~~~~~  258 (507)
                      ++..+.++++|..+|.|.+|.++.+|+..+....+   +...+          ..+++.+.+.+   ..+  .++.|+++
T Consensus       327 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---D~d--~dG~I~~~  401 (486)
T 3mwu_A          327 LDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLL---DMD--GSGSIEYS  401 (486)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHH---CTT--CCSSBCHH
T ss_pred             HHHHHHHHHHHHHhCCCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHh---cCC--CCCcCcHH
Confidence            34557788999999999999999999977766542   33222          44444444443   222  36789999


Q ss_pred             hHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHH
Q 010548          259 GFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAEL  338 (507)
Q Consensus       259 ~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el  338 (507)
                      .|+.+....   .                                       .....+-++.+|+.||+|+||.|+.+|+
T Consensus       402 Ef~~~~~~~---~---------------------------------------~~~~~~~~~~~F~~~D~d~dG~Is~~El  439 (486)
T 3mwu_A          402 EFIASAIDR---T---------------------------------------ILLSRERMERAFKMFDKDGSGKISTKEL  439 (486)
T ss_dssp             HHHHHHSCT---T---------------------------------------TTCCHHHHHHHHHHHCSSCSSSBCSSCC
T ss_pred             HHHHHHHhh---h---------------------------------------ccchHHHHHHHHHHhCCCCCCcCCHHHH
Confidence            998763200   0                                       0001356889999999999999999999


Q ss_pred             HhhhccCC--CCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          339 EDLFLTAP--ESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       339 ~~~f~~~p--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ..++....  ..+...+.+...++.|.+|.|++++|+.++..+
T Consensus       440 ~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  482 (486)
T 3mwu_A          440 FKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNF  482 (486)
T ss_dssp             --------------------CCCCSSCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            99998753  334455667777899999999999999876643

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=98.17  E-value=1.2e-06  Score=78.69  Aligned_cols=134  Identities=16%  Similarity=0.186  Sum_probs=96.1

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~  275 (507)
                      ..+++.|..+|  .+|.++.+|+..    +++...+...++.+.+.+......  .++.|+++.|+.+...+..      
T Consensus        28 ~~~~~~F~~~D--~dG~I~~~el~~----~lg~~~~~~~~~~i~~~~d~~~~~--~~~~i~~~ef~~~~~~~~~------   93 (179)
T 3a8r_A           28 AAVEKRFNQLQ--VDGVLLRSRFGK----CIGMDGSDEFAVQMFDSLARKRGI--VKQVLTKDELKDFYEQLTD------   93 (179)
T ss_dssp             HHHHHHHHHHC--BTTBEEGGGHHH----HHTCCSCHHHHHHHHHHHHHHHTC--CSSEECHHHHHHHHHHHHC------
T ss_pred             HHHHHHHhccC--CCCCCcHHHHHH----HHCCCCcHHHHHHHHHHHHHhccC--CCCCcCHHHHHHHHHHHcC------
Confidence            35667788888  699999999987    346666777788888877654332  2457999999887442210      


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhc-cCCCC------
Q 010548          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFL-TAPES------  348 (507)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~-~~p~~------  348 (507)
                                                          ..-.+-|+..|+.||.|+||.|+.+||..++. .....      
T Consensus        94 ------------------------------------~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~  137 (179)
T 3a8r_A           94 ------------------------------------QGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIK  137 (179)
T ss_dssp             ------------------------------------CCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ------------------------------------CCHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccc
Confidence                                                01235789999999999999999999999997 43221      


Q ss_pred             ---CCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          349 ---PWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       349 ---p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                         ......+...++.|.+|.|++++|+.++...
T Consensus       138 ~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  171 (179)
T 3a8r_A          138 ERADEYTALIMEELDPTNLGYIEMEDLEALLLQS  171 (179)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhC
Confidence               1122334555688999999999999987653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.15  E-value=3.1e-06  Score=86.25  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=36.0

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCC--------CCCccceeEEEEEEcCCCeEEEEEEecCCchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGV  485 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~  485 (507)
                      -.++|+++|++|||||||+++|++..+....        .++.+.+.....+...+....+.+|||+|...+
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~  101 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA  101 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence            4589999999999999999999998774221        112211111111122233457889999998653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.15  E-value=8.4e-07  Score=84.89  Aligned_cols=57  Identities=25%  Similarity=0.298  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCcc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE   71 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~   71 (507)
                      ++|+++|.+|||||||+|+|.+.....  ....+++|........+..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~--~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS--VGAQPGITKGIQWFSLENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECTTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc--cCCCCCCccceEEEEeCCCEEEEECCCccc
Confidence            699999999999999999999877432  222334443322222234689999999653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.14  E-value=1e-06  Score=86.12  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcC-CCCCCC--------CCCccceeEEEEEEcCCCeEEEEEEecCCc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLER-PFSENY--------APTTGEQYAVNVVDQPGGNKKTLILQEIPE  482 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~  482 (507)
                      ..++|+++|++|||||||++++.+. .+...+        .++...+.....+...+....+.+|||+|.
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~   86 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY   86 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence            4589999999999999999998876 443322        111111111112222334568899999998

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=98.13  E-value=3.4e-06  Score=70.81  Aligned_cols=132  Identities=20%  Similarity=0.209  Sum_probs=94.7

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w  277 (507)
                      ++++|..+|.+.+|.++.+|+....... +...+..++..+.+.+..     ..++.|+++.|+.+...+.         
T Consensus         2 l~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~-----~~~g~i~~~ef~~~~~~~~---------   66 (134)
T 1jfj_A            2 AEALFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLLQLIFKSIDA-----DGNGEIDQNEFAKFYGSIQ---------   66 (134)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHTT-CCSSHHHHHHHHHHHHCS-----SCCSEEEHHHHHHHTTCSS---------
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC-----CCCCeEcHHHHHHHHHHhc---------
Confidence            5678999999999999999999887764 456666666666555432     2356799999998732100         


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCcccc
Q 010548          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKD  357 (507)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~  357 (507)
                                     .              ..+ ....+-++.+|+.+|.|++|.|+.+|+..++.......  ...+..
T Consensus        67 ---------------~--------------~~~-~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~~~~~~--~~~~~~  114 (134)
T 1jfj_A           67 ---------------G--------------QDL-SDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVM  114 (134)
T ss_dssp             ---------------C--------------CSS-HHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTTTTCHH--HHHHHH
T ss_pred             ---------------c--------------ccc-CCCHHHHHHHHHHHCCCCCCccCHHHHHHHHHHhCHHH--HHHHHH
Confidence                           0              000 11223389999999999999999999999998654322  333445


Q ss_pred             ccccCCCCccchHhHHhhh
Q 010548          358 AAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~w  376 (507)
                      .++.|.+|.|++++|+...
T Consensus       115 ~~D~~~dg~i~~~ef~~~l  133 (134)
T 1jfj_A          115 KADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             HHHCSSSSEEEHHHHHHHH
T ss_pred             HhCCCCCCcEeHHHHHHHh
Confidence            5678999999999998753

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=98.11  E-value=7.5e-06  Score=74.45  Aligned_cols=127  Identities=17%  Similarity=0.188  Sum_probs=96.3

Q ss_pred             HHHHHHhhccCCCCCccChhhhHHHHhHhcC----CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (507)
Q Consensus       197 ~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~----~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~  272 (507)
                      .+++ |..+|.+.+|.++.+|+....+.+..    ..++..+++.+.+.+..     ..++.|+++.|+.+...      
T Consensus        34 ~l~~-F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~-----d~~g~i~~~eF~~~~~~------  101 (198)
T 1juo_A           34 PLYG-YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDR-----DMSGTMGFNEFKELWAV------  101 (198)
T ss_dssp             TTHH-HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCT-----TCSSCEEHHHHHHHHHH------
T ss_pred             HHHH-HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCC-----CCCCeECHHHHHHHHHH------
Confidence            3566 88889999999999999999888654    26778777777766532     23668999999998552      


Q ss_pred             ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--C
Q 010548          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--W  350 (507)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~  350 (507)
                                                                .+.++.+|+.||.|++|.|+.+|+..++......+  .
T Consensus       102 ------------------------------------------~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~  139 (198)
T 1juo_A          102 ------------------------------------------LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQ  139 (198)
T ss_dssp             ------------------------------------------HHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHH
T ss_pred             ------------------------------------------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHH
Confidence                                                      14678899999999999999999999998753221  1


Q ss_pred             CCCccccccccCCCCccchHhHHhhhhhh
Q 010548          351 DEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ....+...+  |.+|.|++++|+.++..+
T Consensus       140 ~~~~l~~~~--d~dg~i~~~eF~~~~~~~  166 (198)
T 1juo_A          140 AVNSIAKRY--STNGKITFDDYIACCVKL  166 (198)
T ss_dssp             HHHHHHHHT--CSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHh--CCCCeEcHHHHHHHHHHH
Confidence            112222223  889999999999988765

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=98.10  E-value=7.6e-06  Score=77.61  Aligned_cols=147  Identities=18%  Similarity=0.218  Sum_probs=101.8

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ...++.+|..+|.+.+|.++.+|+......+.   +..++..+++.+.+.+-+.+. ...++.|+++.|+.+....    
T Consensus       102 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d-~~~dg~i~~~ef~~~~~~~----  176 (263)
T 2f33_A          102 CEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFD-SNNDGKLELTEMARLLPVQ----  176 (263)
T ss_dssp             HHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTC-SSSSSCBCHHHHHHHSCTT----
T ss_pred             HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcC-CCCCCeEcHHHHHHHHHHH----
Confidence            34578899999999999999999999988875   788899888875443333321 1236779999998874310    


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC------
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA------  345 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~------  345 (507)
                        +...  ++.         ..                 .....+-++.+|+.||.|++|.|+.+|+..++...      
T Consensus       177 --~~~~--~~~---------~~-----------------~~~~~~~~~~~F~~~D~d~~G~is~~El~~~l~~~~~~~~~  226 (263)
T 2f33_A          177 --ENFL--LKF---------QG-----------------IKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQ  226 (263)
T ss_dssp             --TCSH--HHH---------HH-----------------TCCCHHHHHHHHHHHCCSSSSCEEHHHHHHHHHHHHHHCTT
T ss_pred             --HHHH--HHh---------cC-----------------cchHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHhcCC
Confidence              0000  000         00                 00123568899999999999999999999998753      


Q ss_pred             CCCCCCCCccccc-cccCCCCccchHhHHhhh
Q 010548          346 PESPWDEAPYKDA-AETTALGNLTLKGFVSKW  376 (507)
Q Consensus       346 p~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~w  376 (507)
                      +..+.....+... ++.|.+|.|++++|+..-
T Consensus       227 ~~~~~e~~~~~~~~~D~d~dG~i~~~EF~~~~  258 (263)
T 2f33_A          227 ELDINNISTYKKNIMALSDGGKLYRTDLALIL  258 (263)
T ss_dssp             TCCTTTHHHHHHHHHTTSBTTEECGGGTHHHH
T ss_pred             CCCHHHHHHHHHHhhccCCCCeEcHHHHHHHH
Confidence            2233333334443 588999999999998753

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=98.10  E-value=3.2e-06  Score=88.29  Aligned_cols=139  Identities=21%  Similarity=0.208  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC---CCC-------HHHHHHHHHHHHhhccCCccCCCcchhhHH
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA---PLQ-------PAEIVGVKRVVQEKQHDGVNDLGLTLSGFL  261 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~---~l~-------~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~  261 (507)
                      ++..+.++++|..+|.|.+|.++.+|+......++..   ..+       ..+++.+.+.+   ..+  .++.|+++.|+
T Consensus       331 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---D~d--~~g~i~~~Ef~  405 (484)
T 3nyv_A          331 QDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAV---DFD--KNGYIEYSEFV  405 (484)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHH---TCC--TTSEEEHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCCceEeHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHh---CCC--CCCeEeHHHHH
Confidence            3445678889999999999999999997776665432   222       33344433333   222  36789999999


Q ss_pred             HHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhh
Q 010548          262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL  341 (507)
Q Consensus       262 ~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~  341 (507)
                      .+.....                                          .....+.++.+|+.||+|+||.|+.+|+..+
T Consensus       406 ~~~~~~~------------------------------------------~~~~~~~~~~~F~~~D~d~dG~I~~~El~~~  443 (484)
T 3nyv_A          406 TVAMDRK------------------------------------------TLLSRERLERAFRMFDSDNSGKISSTELATI  443 (484)
T ss_dssp             HHHHHHH------------------------------------------HHHHHHHHHHHHHHHCTTCCSEEEHHHHHHH
T ss_pred             HHHHhcc------------------------------------------ccCcHHHHHHHHHHHCCCCCCcCCHHHHHHH
Confidence            8854321                                          0123457889999999999999999999999


Q ss_pred             hccCCCCCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          342 FLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       342 f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      +...+......+.+...++.|.+|.|++++|+.+-.
T Consensus       444 l~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~  479 (484)
T 3nyv_A          444 FGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL  479 (484)
T ss_dssp             HHHTTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence            987322222234455667889999999999987543

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=98.10  E-value=1.1e-05  Score=70.87  Aligned_cols=124  Identities=14%  Similarity=0.111  Sum_probs=93.8

Q ss_pred             HHhhccCCCCCccChhhhHHHHhHhcC----CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccch
Q 010548          201 IFIICDHDMDGALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (507)
Q Consensus       201 ~~~~~d~~~d~~l~~~el~~~~~~~~~----~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~  276 (507)
                      .|..+|.+.+|.++.+|+....+.+..    ...+..+++.+.+.+..     ..++.|+++.|+.+...          
T Consensus         4 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~-----~~~g~i~~~eF~~~~~~----------   68 (165)
T 1k94_A            4 TYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDR-----DHTGKMGFNAFKELWAA----------   68 (165)
T ss_dssp             HHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCT-----TCSSCBCHHHHHHHHHH----------
T ss_pred             HHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCC-----CCCCcCCHHHHHHHHHH----------
Confidence            477889999999999999999887654    26777777777666532     23678999999998552          


Q ss_pred             hHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCc
Q 010548          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAP  354 (507)
Q Consensus       277 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~  354 (507)
                                                            .+.++.+|+.||.|++|.|+.+|+..++......+  .....
T Consensus        69 --------------------------------------~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~  110 (165)
T 1k94_A           69 --------------------------------------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTT  110 (165)
T ss_dssp             --------------------------------------HHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             --------------------------------------HHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHH
Confidence                                                  14578899999999999999999999998754322  11222


Q ss_pred             cccccccCCCCccchHhHHhhhhhh
Q 010548          355 YKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      +...+  +.+|.|++++|+.+....
T Consensus       111 ~~~~~--d~dg~i~~~eF~~~~~~~  133 (165)
T 1k94_A          111 IVKRY--SKNGRIFFDDYVACCVKL  133 (165)
T ss_dssp             HHHHH--CBTTBCBHHHHHHHHHHH
T ss_pred             HHHHh--CCCCeEcHHHHHHHHHHH
Confidence            22223  889999999999987665

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.09  E-value=2.9e-05  Score=79.25  Aligned_cols=141  Identities=13%  Similarity=0.061  Sum_probs=80.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc------CCCC-CCCCCCCC-------------Cee-eCCc--c-------------
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAAT------ESVP-EKVPPVHA-------------PTR-LPPD--F-------------   54 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~------~~~~-~~~~~~~~-------------~~t-~~~~--~-------------   54 (507)
                      +...|+++|.+||||||++..|..      .+.. ....+..+             +.. ....  .             
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999873      2210 00000000             000 0000  0             


Q ss_pred             cCCceEEEEEeCCCCccchh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548           55 YPDRVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        55 ~~~~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~  128 (507)
                      ...++.+.|+||+|...... ...     .....+|.+++|+|++.+.....    ....+...  -.+..+|.||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCc
Confidence            01347899999999653222 111     22346899999999987644322    22333333  24667999999986


Q ss_pred             CCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ..      ......+....+.  |+..++.  |++++++
T Consensus       253 ~~------gG~~ls~~~~~g~--PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          253 AK------GGGALSAVAATGA--PIKFIGT--GEKIDDI  281 (443)
T ss_dssp             SS------HHHHHHHHHTTCC--CEEEEEC--SSSTTCE
T ss_pred             cc------ccHHHHHHHHHCC--CEEEEEc--CCChHHh
Confidence            42      1223334444443  5666664  8888765

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=98.08  E-value=6.6e-06  Score=75.47  Aligned_cols=165  Identities=15%  Similarity=0.144  Sum_probs=103.8

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      ..++..+.+.++|..+|.+.+|.++.+|+.....  .+.....   +.+.   .....  ..++.|+++.|+.+...+..
T Consensus        23 ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~~~--lg~~~~~---~~l~---~~~d~--~~~g~i~~~EF~~~~~~~~~   92 (208)
T 2ct9_A           23 FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPE--LAINPLG---DRII---NAFFS--EGEDQVNFRGFMRTLAHFRP   92 (208)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEECTGGGGGCHH--HHTSTTH---HHHH---HTTSC--TTCSCEEHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH--cCCCCcH---HHHH---HHHcC--CCCCcCcHHHHHHHHHhhcc
Confidence            3455677899999999999999999999987532  2222222   2222   22222  23678999999988653321


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p  349 (507)
                      ... ..-|...              +.           ........+.++.+|+.||.|++|.|+.+|+..++...-+.+
T Consensus        93 ~~~-~~~~~~~--------------~~-----------~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~  146 (208)
T 2ct9_A           93 IED-NEKSKDV--------------NG-----------PEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVN  146 (208)
T ss_dssp             CC-------------------------------------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTT
T ss_pred             ccc-hhhhccc--------------cc-----------ccccccHHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCC
Confidence            100 0012100              00           001123567899999999999999999999999998642222


Q ss_pred             CCC---Ccc----ccccccCCCCccchHhHHhhhhhhhhcCHHHHHHHH
Q 010548          350 WDE---APY----KDAAETTALGNLTLKGFVSKWALMTLLDPRHSLANL  391 (507)
Q Consensus       350 ~~~---~~~----~~~~~~~~~~~~~~~~~~~~w~~~~~~d~~~~l~~l  391 (507)
                      ...   ..+    ...++.|.+|.|++++|+....... +.....++++
T Consensus       147 ~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~~~-~~~~~~~~~~  194 (208)
T 2ct9_A          147 ISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVD-VEQKMSIRFL  194 (208)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTTSC-GGGSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccC-hHHHhhHHHH
Confidence            221   222    4557889999999999999776544 4444455544

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.07  E-value=3.7e-06  Score=89.00  Aligned_cols=62  Identities=19%  Similarity=0.071  Sum_probs=42.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcc------cCCceEEEEEeCCCCcc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF------YPDRVPVTIIDTSSSLE   71 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~------~~~~~~~~i~Dt~G~~~   71 (507)
                      .+..+|+|+|.||||||||+|+|++......++++..+.|.....      ...+..+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456789999999999999999999977322333333333322211      23467899999999764

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=98.04  E-value=1.7e-05  Score=74.11  Aligned_cols=135  Identities=17%  Similarity=0.238  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      ..+.+.+.|..  .+.+|.++.+|+.......+........++.+.+.+.   .  ..++.|+++.|+.+...+...   
T Consensus        65 ei~~l~~~F~~--~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D---~--d~~G~I~~~Ef~~~l~~~~~~---  134 (229)
T 3dd4_A           65 ELQILYRGFKN--ECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFD---T--DHNGAVSFEDFIKGLSILLRG---  134 (229)
T ss_dssp             HHHHHHHHHHT--TCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTC---S--SCCSSCCHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHh--hCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcC---C--CCCCeEeHHHHHHHHHHHcCC---
Confidence            33445555544  5678999999999998888776666655555544432   2  246789999999986654311   


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC--------
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA--------  345 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~--------  345 (507)
                                                             ...+.++.+|+.||.|+||.|+.+|+..++...        
T Consensus       135 ---------------------------------------~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~  175 (229)
T 3dd4_A          135 ---------------------------------------TVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCT  175 (229)
T ss_dssp             ---------------------------------------CHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC---
T ss_pred             ---------------------------------------ChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhcccc
Confidence                                                   113578899999999999999999999998752        


Q ss_pred             -C--C---CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          346 -P--E---SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       346 -p--~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                       |  +   .......+...++.|.+|.|++++|+....
T Consensus       176 ~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~  213 (229)
T 3dd4_A          176 YPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQ  213 (229)
T ss_dssp             --------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHH
Confidence             1  1   111223344556889999999999998665

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=98.03  E-value=1.1e-05  Score=72.04  Aligned_cols=119  Identities=8%  Similarity=0.008  Sum_probs=87.5

Q ss_pred             cCCCCCccChhhhHHHHhHhc-----CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHH
Q 010548          206 DHDMDGALNDAELNEFQVKCF-----NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVL  280 (507)
Q Consensus       206 d~~~d~~l~~~el~~~~~~~~-----~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l  280 (507)
                      ..+.+|.++.+||....+.++     +...+..+++.+...+..   +  .++.|+++.|+.++..              
T Consensus        14 ~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~---d--~~G~I~f~EF~~~~~~--------------   74 (174)
T 2i7a_A           14 LVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMEL---K--VNGRLDQEEFARLWKR--------------   74 (174)
T ss_dssp             SCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCS---S--CSSEECHHHHHHHHHH--------------
T ss_pred             cCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCC---C--CCCcCCHHHHHHHHHH--------------
Confidence            456899999999999999874     456777777766665532   2  3567999999988542              


Q ss_pred             hhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC----CCCC--CCCCc
Q 010548          281 RKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA----PESP--WDEAP  354 (507)
Q Consensus       281 ~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~----p~~p--~~~~~  354 (507)
                                                        .+.++..|+.|| |++|.|+.+||..++...    ...+  .....
T Consensus        75 ----------------------------------~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~  119 (174)
T 2i7a_A           75 ----------------------------------LVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHL  119 (174)
T ss_dssp             ----------------------------------HHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHH
T ss_pred             ----------------------------------HHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHH
Confidence                                              135778999999 999999999999999876    4322  11233


Q ss_pred             cccccccCCCCccchHhHHhhhhhh
Q 010548          355 YKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      +...++ +.+|.|++++|+.++...
T Consensus       120 l~~~~d-d~dG~I~~~EF~~~~~~~  143 (174)
T 2i7a_A          120 VTLRYS-DSVGRVSFPSLVCFLMRL  143 (174)
T ss_dssp             HHHHHS-CTTSEECHHHHHHHHHHH
T ss_pred             HHHHHc-CCCCeEcHHHHHHHHHHH
Confidence            444456 889999999999987654

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=98.02  E-value=3e-06  Score=69.11  Aligned_cols=100  Identities=18%  Similarity=0.269  Sum_probs=74.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCC
Q 010548          227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ  306 (507)
Q Consensus       227 ~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~  306 (507)
                      +..++..+++.+.+.+.       .++.|+++.|+.+...                                        
T Consensus         4 ~~~~~~~ei~~~~~~~D-------~~g~i~~~eF~~~~~~----------------------------------------   36 (109)
T 3fs7_A            4 TDILSAKDIESALSSCQ-------AADSFNYKSFFSTVGL----------------------------------------   36 (109)
T ss_dssp             GGTSCHHHHHHHHHHTC-------STTCCCHHHHHHHHTC----------------------------------------
T ss_pred             cCcCCHHHHHHHHHhcC-------CCCcCcHHHHHHHHhc----------------------------------------
Confidence            34566677777766663       3678999999988431                                        


Q ss_pred             ceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548          307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       307 ~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                          +....+-++.+|+.||.|++|.|+.+|+..++....  +.+..   ...+...++.|.+|.|++++|+.+|.
T Consensus        37 ----~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~EF~~~~~  108 (109)
T 3fs7_A           37 ----SSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVK  108 (109)
T ss_dssp             ----TTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred             ----CCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence                011246789999999999999999999999998762  33322   23345567889999999999999875

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=98.01  E-value=7.7e-06  Score=77.98  Aligned_cols=151  Identities=17%  Similarity=0.204  Sum_probs=104.0

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhH---hcCC--CCCHHHHHHHHHHH-HhhccCCccCCCcchhhHHHHHHHHH
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVK---CFNA--PLQPAEIVGVKRVV-QEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~---~~~~--~l~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      ...++++|..+|.+.+|.++.+|+....+.   .++.  .++..+++.+.+.+ ...-.+  .++.|+++.|+.+..-..
T Consensus        10 ~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d--~~g~i~~~Ef~~~~~~~~   87 (272)
T 2be4_A           10 AAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDAT--FDGRLQIEELANMILPQE   87 (272)
T ss_dssp             HHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHT--CCSEEEHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCC--CCCcEeHHHHHHHHhhhh
Confidence            346889999999999999999999999884   5566  88888888877554 222222  256799999998832110


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC---
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA---  345 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~---  345 (507)
                      .+     .=..++..+.                          ....+-++.+|+.||.|++|.|+.+|+..++...   
T Consensus        88 ~~-----~~~~~~~~~~--------------------------~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~  136 (272)
T 2be4_A           88 EN-----FLLIFRREAP--------------------------LDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQ  136 (272)
T ss_dssp             HH-----HHHHHHHHSC--------------------------CCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHH
T ss_pred             HH-----HHHHHhhccC--------------------------cccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHh
Confidence            00     0000111110                          0113458899999999999999999999998753   


Q ss_pred             CCCCCCCC-------ccccccccCCCCccchHhHHhhhhh
Q 010548          346 PESPWDEA-------PYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       346 p~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      .+.+....       .+...++.+.+|.|++++|++.+..
T Consensus       137 ~g~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~  176 (272)
T 2be4_A          137 HKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILAL  176 (272)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHCSSCSSEEEHHHHGGGSCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHHhh
Confidence            12222211       1445578899999999999998764

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=97.99  E-value=4.6e-06  Score=67.84  Aligned_cols=99  Identities=14%  Similarity=0.213  Sum_probs=72.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCC
Q 010548          227 NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQ  306 (507)
Q Consensus       227 ~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~  306 (507)
                      +. .+..+++.+.+.+.       .++.|+++.|+.+...                                        
T Consensus         4 G~-~~~~e~~~l~~~~d-------~~g~i~~~eF~~~~~~----------------------------------------   35 (108)
T 2pvb_A            4 AG-LKDADVAAALAACS-------AADSFKHKEFFAKVGL----------------------------------------   35 (108)
T ss_dssp             TT-SCHHHHHHHHHHTC-------STTCCCHHHHHHHHTG----------------------------------------
T ss_pred             CC-CCHHHHHHHHHHhC-------CCCcCcHHHHHHHHhC----------------------------------------
Confidence            44 66777777776654       3568999999988431                                        


Q ss_pred             ceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548          307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       307 ~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                          +....+.++.+|+.||.|++|.|+.+|+..++....  +.+..   ...+...++.+.+|.|++++|+.++.
T Consensus        36 ----~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 2pvb_A           36 ----ASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIK  107 (108)
T ss_dssp             ----GGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             ----ChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence                011256789999999999999999999999998762  22222   23344556789999999999998764

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=97.98  E-value=1.3e-05  Score=74.72  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             ccHHHHHHHHHHHhhccCC--CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHD--MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~--~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      ..+...+.+.+.|..+|.+  .+|.++.+|+......  ........++.+.+.+.   .+  .++.|+++.|+.+...+
T Consensus        42 ls~~ei~~l~~~F~~~D~d~~~~G~I~~~El~~~l~~--~~~~~~~~~~~~f~~~D---~d--~dG~I~~~Ef~~~~~~~  114 (226)
T 2zfd_A           42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFD---TK--HNGILGFEEFARALSVF  114 (226)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHS--CSSCCCHHHHHHHHHHC---SS--CSSSBCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCcccCCCCeEcHHHHHHHHhc--cCcccHHHHHHHHHHHc---CC--CCCcCcHHHHHHHHHHH
Confidence            3455677889999999999  9999999999988876  22223333344444432   22  36679999999876532


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc---
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT---  344 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~---  344 (507)
                      ..                                         .....+-++.+|+.||.|++|.|+.+|+..++..   
T Consensus       115 ~~-----------------------------------------~~~~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~  153 (226)
T 2zfd_A          115 HP-----------------------------------------NAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLA  153 (226)
T ss_dssp             ST-----------------------------------------TSCHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHH
T ss_pred             cc-----------------------------------------CCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence            10                                         0113456889999999999999999999999952   


Q ss_pred             CCCCCCC---CCccc----cccccCCCCccchHhHHhhhh
Q 010548          345 APESPWD---EAPYK----DAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       345 ~p~~p~~---~~~~~----~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ..+.+..   ...+.    ..++.|.+|.|++++|+....
T Consensus       154 ~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~~  193 (226)
T 2zfd_A          154 ESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVL  193 (226)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHH
T ss_pred             HcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            1122222   11122    256789999999999998654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.96  E-value=1.2e-05  Score=81.84  Aligned_cols=83  Identities=22%  Similarity=0.115  Sum_probs=54.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh----hhhhcc-chhhcccc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----VKKILS-NKEALASC  498 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----~~~~~~-~~~~~~~a  498 (507)
                      -.|++||.+|||||||++++++........+..+.......+... ....+.+||++|...    +..+.. ....++++
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            358999999999999999999876533333333333444455555 346788999999732    111110 01234679


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      +.++.|+|+
T Consensus       237 ~~lL~vvDl  245 (416)
T 1udx_A          237 RVLLYVLDA  245 (416)
T ss_dssp             SEEEEEEET
T ss_pred             HhhhEEeCC
Confidence            999999995

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=97.96  E-value=8.7e-06  Score=74.32  Aligned_cols=138  Identities=17%  Similarity=0.132  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHhhccCC-CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548          192 PRCVRALKRIFIICDHD-MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~-~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~  270 (507)
                      .-..+.++++|..+|.+ .+|.++.+|+......... +.+...++.+.+.+..     ..++.|+++.|+.+...+.. 
T Consensus        18 ~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~f~~~D~-----d~~G~i~~~Ef~~~~~~~~~-   90 (204)
T 1jba_A           18 AADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDN-EEATQYVEAMFRAFDT-----NGDNTIDFLEYVAALNLVLR-   90 (204)
T ss_dssp             HHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSS-STTHHHHHHHHHHHCC-----SSSSEECHHHHHHHHHHHSS-
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcC-CCcHHHHHHHHHHHcC-----CCCCeEeHHHHHHHHHHHcc-
Confidence            34456678889999999 8999999999999887544 6677777666665532     23567999999998653210 


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-----
Q 010548          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-----  345 (507)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-----  345 (507)
                        .                                       ...+-++.+|+.||.|++|.|+.+|+..++...     
T Consensus        91 --~---------------------------------------~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g  129 (204)
T 1jba_A           91 --G---------------------------------------TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKK  129 (204)
T ss_dssp             --C---------------------------------------CCTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHH
T ss_pred             --C---------------------------------------CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhC
Confidence              0                                       012457889999999999999999999998753     


Q ss_pred             -CCCCC---------C----CCccccccccCCCCccchHhHHhhhh
Q 010548          346 -PESPW---------D----EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       346 -p~~p~---------~----~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                       +..+.         .    ...+...++.|.+|.|++++|+....
T Consensus       130 ~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~  175 (204)
T 1jba_A          130 ACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGAR  175 (204)
T ss_dssp             HSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHT
T ss_pred             CCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence             11110         1    12233456789999999999998764

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=97.95  E-value=6.5e-06  Score=66.32  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=59.1

Q ss_pred             CCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCccccccccCCCCccchHhHHhh
Q 010548          305 DQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       305 ~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      ....+|++.-.+-|+..|+.||+|++|.|+.+||..++.....  .......+...++.|.+|.|++++|+++
T Consensus        25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~   97 (100)
T 2lv7_A           25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTL   97 (100)
T ss_dssp             CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHH
Confidence            3456899999999999999999999999999999999987433  3344455667788999999999999874

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=97.94  E-value=7.7e-06  Score=80.72  Aligned_cols=129  Identities=16%  Similarity=0.204  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHH-HHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVG-VKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~-l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~  272 (507)
                      ....+..+|..+|.+.+|.++.+|+....   .+..++..++.. +...+.   +  ..++.|++++|+.++....    
T Consensus       186 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l---~g~~~~~~ei~~~l~~~~D---~--d~dG~Is~~EF~~~l~~~~----  253 (323)
T 1ij5_A          186 DLAALVADFRKIDTNSNGTLSRKEFREHF---VRLGFDKKSVQDALFRYAD---E--DESDDVGFSEYVHLGLCLL----  253 (323)
T ss_dssp             HHHTSCCCHHHHCTTCCSEECHHHHHHHH---HHTTCCCHHHHHHHHHHHC---T--TCSSCEEHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHCCCCCCcCcHHHHHHHH---cCCCCCHHHHHHHHHHHhc---C--CCCCEEeHHHHHHHHHHHH----
Confidence            44567778899999999999999999888   566777777777 665553   2  2367899999999866332    


Q ss_pred             ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhh-ccCC--CCC
Q 010548          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLF-LTAP--ESP  349 (507)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f-~~~p--~~p  349 (507)
                                                                  .+..+|+.||.|++|.|+.+|+..++ ....  ..+
T Consensus       254 --------------------------------------------~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~ls~  289 (323)
T 1ij5_A          254 --------------------------------------------VLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESAR  289 (323)
T ss_dssp             --------------------------------------------HHHHHHHHTCSSSCSSEEHHHHHHHHHHTTCCGGGC
T ss_pred             --------------------------------------------HHHHHHHHhCCCCCCCccHHHHHHHHHHHcCCCCCH
Confidence                                                        46788999999999999999999999 6542  233


Q ss_pred             CCCCccccccccCCCCccchHhHHhhhhh
Q 010548          350 WDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      .....+...++.|.+|.|++++|+..+.-
T Consensus       290 ~e~~~l~~~~D~d~dG~Is~~EF~~~~~~  318 (323)
T 1ij5_A          290 KKFEHQFSVVDVDDSKSLSYQEFVMLVLL  318 (323)
T ss_dssp             STHHHHHHHHTTTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcEeHHHHHHHHHH
Confidence            33344556678899999999999987653

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=97.94  E-value=2.4e-06  Score=69.72  Aligned_cols=99  Identities=16%  Similarity=0.227  Sum_probs=72.0

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCc
Q 010548          228 APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQS  307 (507)
Q Consensus       228 ~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~  307 (507)
                      ..++..+++.+.+.+.       .++.|+++.|+.+..+                                         
T Consensus         5 ~~~t~~e~~~~~~~~d-------~~g~i~~~ef~~~~~~-----------------------------------------   36 (110)
T 1pva_A            5 DLLKADDIKKALDAVK-------AEGSFNHKKFFALVGL-----------------------------------------   36 (110)
T ss_dssp             HHSCHHHHHHHHHHTC-------STTCCCHHHHHHHHTC-----------------------------------------
T ss_pred             ccCCHHHHHHHHHhcC-------CCCcCcHHHHHHHHcc-----------------------------------------
Confidence            3456667777666653       3568999999988420                                         


Q ss_pred             eecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548          308 VELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       308 ~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                         ++...+.++.+|+.||.|++|.|+.+|+..++....  +.+-.   ...+...++.+.+|.|++++|+.++.
T Consensus        37 ---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~  108 (110)
T 1pva_A           37 ---KAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVH  108 (110)
T ss_dssp             ---TTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             ---CcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence               011256789999999999999999999999998762  22212   23344556789999999999998764

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=97.93  E-value=1.2e-05  Score=73.49  Aligned_cols=140  Identities=16%  Similarity=0.151  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHhhccCC--CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDHD--MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~--~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      .+...+.+.+.|..+|.+  .+|.++.+|+......  ........++.+.+.+.   .  ..++.|+++.|+.+...+.
T Consensus        32 s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~--~~~~~~~~~~~~f~~~D---~--d~~g~i~~~Ef~~~~~~~~  104 (207)
T 2ehb_A           32 TVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFR--NRNRRNLFADRIFDVFD---V--KRNGVIEFGEFVRSLGVFH  104 (207)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHS--CTTCCCHHHHHHHHHHC---T--TCSSEECHHHHHHHHGGGS
T ss_pred             CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhc--cccccHHHHHHHHHHhc---C--CCCCeEeHHHHHHHHHHHc
Confidence            345567789999999999  9999999999988765  22233333444444442   2  2356799999988754211


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC---
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA---  345 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~---  345 (507)
                      .                                         .....+-++.+|+.||.|++|.|+.+|+..++...   
T Consensus       105 ~-----------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~  143 (207)
T 2ehb_A          105 P-----------------------------------------SAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHE  143 (207)
T ss_dssp             T-----------------------------------------TSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHH
T ss_pred             c-----------------------------------------CCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence            0                                         01134568899999999999999999999998521   


Q ss_pred             ---CCCCCCCCccc----cccccCCCCccchHhHHhhhhh
Q 010548          346 ---PESPWDEAPYK----DAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       346 ---p~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                         +..+.....+.    ..++.|.+|.|++++|+.....
T Consensus       144 ~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~  183 (207)
T 2ehb_A          144 SELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL  183 (207)
T ss_dssp             HTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence               11221111222    3578899999999999986543

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=97.92  E-value=1.1e-05  Score=72.10  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=95.2

Q ss_pred             ccHHHHHHHHHHHhhccC-----CC-C--CccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCC-cchhhH
Q 010548          190 LKPRCVRALKRIFIICDH-----DM-D--GALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLG-LTLSGF  260 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~-----~~-d--~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~f  260 (507)
                      ..+...+.+.+.|..+|.     +. +  |.++.+|+.. . ..++......   .+.+.+     +...++. |+++.|
T Consensus        14 ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l-~~~g~~~~~~---~l~~~~-----D~d~~G~~I~~~EF   83 (183)
T 1dgu_A           14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-L-PELKANPFKE---RICRVF-----STSPAKDSLSFEDF   83 (183)
T ss_dssp             CCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-S-TTSSSCTTHH---HHHHHH-----SCSSSSCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-H-HhhhcCcHHH---HHHHHh-----CCCCCCCEecHHHH
Confidence            456667788999999998     56 7  9999999988 3 3444444443   333333     2223566 999999


Q ss_pred             HHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHh
Q 010548          261 LFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELED  340 (507)
Q Consensus       261 ~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~  340 (507)
                      +.+...+...                                         ....+-++.+|+.||.|++|.|+.+|+..
T Consensus        84 ~~~~~~~~~~-----------------------------------------~~~~~~l~~~F~~~D~d~~G~I~~~El~~  122 (183)
T 1dgu_A           84 LDLLSVFSDT-----------------------------------------ATPDIKSHYAFRIFDFDDDGTLNREDLSR  122 (183)
T ss_dssp             HHHHHHHSTT-----------------------------------------CCHHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             HHHHHHhcCC-----------------------------------------CCHHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            9987643210                                         01235788999999999999999999999


Q ss_pred             hhccCCC----CCCC---CC----ccccccccCCCCccchHhHHhhhh
Q 010548          341 LFLTAPE----SPWD---EA----PYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       341 ~f~~~p~----~p~~---~~----~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      ++.....    .+..   ..    .+...++.|.+|.|++++|+....
T Consensus       123 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~  170 (183)
T 1dgu_A          123 LVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS  170 (183)
T ss_dssp             HHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHHHHC
T ss_pred             HHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence            9886422    1111   11    144556789999999999988654

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=97.91  E-value=1.1e-05  Score=72.00  Aligned_cols=135  Identities=18%  Similarity=0.243  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      ..+.+.+.|...  +.+|.++.+|+......+.....+...++.+.+.+..     ..++.|+++.|+.+...+...   
T Consensus        19 ~i~~l~~~fd~~--d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~-----d~~g~i~~~Ef~~~~~~~~~~---   88 (183)
T 1s6c_A           19 ELQVLYRGFKNE--XPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDT-----TQTGSVKFEDFVTALSILLRG---   88 (183)
T ss_dssp             HHHHHHHHHHHH--CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCT-----TCSSCEEHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHh--CCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCC-----CCCCcEeHHHHHHHHHHHcCC---
Confidence            333444444432  6789999999999999887666777777777666542     236689999999986643310   


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC----CC--
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA----PE--  347 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~----p~--  347 (507)
                                                             ...+-++.+|+.||.|++|.|+.+|+..++...    ..  
T Consensus        89 ---------------------------------------~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~  129 (183)
T 1s6c_A           89 ---------------------------------------TVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYT  129 (183)
T ss_dssp             ---------------------------------------CHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC---
T ss_pred             ---------------------------------------CHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhcccc
Confidence                                                   023567889999999999999999999998753    11  


Q ss_pred             CC-CC-------CCccccccccCCCCccchHhHHhhhh
Q 010548          348 SP-WD-------EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       348 ~p-~~-------~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .| ..       ...+...++.|.+|.|++++|+..+.
T Consensus       130 ~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~  167 (183)
T 1s6c_A          130 YPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQ  167 (183)
T ss_dssp             --------CHHHHHHHHHHHCTTCSSEECHHHHHHHTT
T ss_pred             CcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            11 11       12234456789999999999998764

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=97.88  E-value=5.6e-06  Score=67.43  Aligned_cols=101  Identities=13%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCC
Q 010548          226 FNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPD  305 (507)
Q Consensus       226 ~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~  305 (507)
                      ++..++..+++.+...+.       .++.|+++.|+.+...                                       
T Consensus         3 lg~~~~~~e~~~~~~~~d-------~~g~i~~~eF~~~~~~---------------------------------------   36 (109)
T 1bu3_A            3 FSGILADADVAAALKACE-------AADSFNYKAFFAKVGL---------------------------------------   36 (109)
T ss_dssp             CSCSSCHHHHHHHHHHTC-------STTCCCHHHHHHHHTG---------------------------------------
T ss_pred             ccccCCHHHHHHHHHHhC-------CCCcCcHHHHHHHHHc---------------------------------------
Confidence            455677777777777654       3568999999987431                                       


Q ss_pred             CceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548          306 QSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       306 ~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                           .....+.++.+|+.||.|++|.|+.+|+..++....  +.+..   ...+...++.+.+|.|++++|+.++.
T Consensus        37 -----~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  108 (109)
T 1bu3_A           37 -----TAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVK  108 (109)
T ss_dssp             -----GGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred             -----ChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence                 011246789999999999999999999999998752  22222   23345556789999999999998764

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=97.86  E-value=4.1e-05  Score=86.13  Aligned_cols=172  Identities=15%  Similarity=0.144  Sum_probs=106.6

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  274 (507)
                      ...++.+|..+|.+.+|.++.+|+....+.. +..++..+++.+...+.      ..++.|+++.|+.+....      +
T Consensus       606 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~-g~~l~~~~~~~l~~~~d------d~dg~I~~~eF~~~~~~~------~  672 (900)
T 1qxp_A          606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAA-GFKLPCQLHQVIVARFA------DDELIIDFDNFVRCLVRL------E  672 (900)
T ss_dssp             HHHHHHHHGGGCTTCCSCCBHHHHHHHHHHT-TEECCHHHHHHHHHHTS------CSSSBCCHHHHHHHHHHH------H
T ss_pred             HHHHHHHHHhhCCCCCCeECHHHHHHHHHHh-CCCCCHHHHHHHHHHhC------CCCCeEcHHHHHHHHHHH------H
Confidence            3678899999999999999999999988764 56678877776666542      236789999999887643      4


Q ss_pred             chhHHHhhccCCCCcccc---CCCC----C-------C---CCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHH
Q 010548          275 TTWAVLRKFGYGDDLELR---DDFL----P-------V---PTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAE  337 (507)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~---~~~~----p-------~---~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~e  337 (507)
                      ..+..++.+.-+.+=.+.   .+++    .       .   .................+-++++|+++|.+ +|.++.+|
T Consensus       673 ~l~~~F~~~D~d~~G~It~~~~efl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~-~G~Is~~E  751 (900)
T 1qxp_A          673 ILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGD-DMEVSATE  751 (900)
T ss_dssp             HHHHHHHHSCSSCCSCEEEEHHHHHHHTCC--------------CCCCCC--------------CCCCTTC-SSCBCHHH
T ss_pred             HHHHHHHhhCCCCCceEEecHHHHHHHhhhccccccccccccccccccCCCCCChHHHHHHHHHHHHhcCC-CCccCHHH
Confidence            455555555443322110   0000    0       0   000001111233344567789999999998 99999999


Q ss_pred             HHhhhccCCC-------CC---CCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          338 LEDLFLTAPE-------SP---WDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       338 l~~~f~~~p~-------~p---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      +.+++.....       .+   ..++.+...+++|.+|.|++++|.++|..+.
T Consensus       752 l~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~dG~Is~~EF~~l~~~~~  804 (900)
T 1qxp_A          752 LMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIK  804 (900)
T ss_dssp             HTTTSCC----CCSCC--CCCHHHHHHHHHHHCCSSSSSBCSHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccccCCCCHHHHHHHHHHHCCCCCCeECHHHHHHHHHHHH
Confidence            9999886421       11   1233455667899999999999999997654

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=97.85  E-value=5.8e-06  Score=67.33  Aligned_cols=98  Identities=15%  Similarity=0.232  Sum_probs=71.1

Q ss_pred             CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCce
Q 010548          229 PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSV  308 (507)
Q Consensus       229 ~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~  308 (507)
                      .++..+++.+.+.+..       ++.|+++.|+.++..                                          
T Consensus         5 ~~s~~ei~~~~~~~d~-------~g~i~~~eF~~~~~~------------------------------------------   35 (109)
T 5pal_A            5 VLKADDINKAISAFKD-------PGTFDYKRFFHLVGL------------------------------------------   35 (109)
T ss_dssp             TSCHHHHHHHHHHTCS-------TTCCCHHHHHHHHTC------------------------------------------
T ss_pred             cCCHHHHHHHHHHhCC-------CCcCcHHHHHHHHhh------------------------------------------
Confidence            4566666666666532       678999999997431                                          


Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                        .....+.++.+|+.||+|++|.|+.+|+..++....  +.+..   ...+...++.|.+|.|++++|+.++.
T Consensus        36 --~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (109)
T 5pal_A           36 --KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVA  107 (109)
T ss_dssp             --TTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred             --ccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence              011246789999999999999999999999998641  22222   23344556789999999999998764

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=97.84  E-value=1e-05  Score=77.03  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=100.5

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHH-HHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKR-VVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~-~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ..+.++|..+|.+.+|.++.+|+........   +..++..+++.+.+ .+.....+  .++.|+++.|+.+...     
T Consensus       104 ~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~--~dg~i~~~ef~~~~~~-----  176 (272)
T 2be4_A          104 VEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKN--KDGRLDLNDLARILAL-----  176 (272)
T ss_dssp             HHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSS--CSSEEEHHHHGGGSCC-----
T ss_pred             HHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC--CCCcCcHHHHHHHHhh-----
Confidence            4578889999999999999999999988875   77888888876444 33333222  3667999999876321     


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecC-HhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC---
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELA-SEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE---  347 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s-~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~---  347 (507)
                      .....|.                         . ....+. ....+-++.+|+.||.|++|.|+.+|+..++.....   
T Consensus       177 ~~~~~~~-------------------------~-~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~~  230 (272)
T 2be4_A          177 QENFLLQ-------------------------F-KMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVR  230 (272)
T ss_dssp             SSCSSTT-------------------------S-CCCHHHHHHHHHHHHHHHHHHCTTCCSEEETHHHHHHHHHHHHHHS
T ss_pred             hHHHHhh-------------------------h-hhhhccccccHHHHHHHHHHhCCCCCCeecHHHHHHHHHHHHHHcC
Confidence            0000000                         0 000001 123467899999999999999999999998875311   


Q ss_pred             CCCC---CCc----cccccccCCCCccchHhHHhhhh
Q 010548          348 SPWD---EAP----YKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       348 ~p~~---~~~----~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .+..   ...    +...++.|.+|.|++++|+..-.
T Consensus       231 ~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~~~~  267 (272)
T 2be4_A          231 PSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG  267 (272)
T ss_dssp             SSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence            1122   111    44567889999999999987543

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=97.82  E-value=5.1e-06  Score=68.34  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             CCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          304 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       304 ~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      |.....+|+.-.+-++.+|+.||+|+||.|+.+|+..++............+...++.|.+|.|++++|+..+..+.
T Consensus         2 ~~~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~   78 (111)
T 2kgr_A            2 PVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLID   78 (111)
T ss_dssp             CSCCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHH
Confidence            44556688888999999999999999999999999999983222111123344556889999999999999876543

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=97.82  E-value=2.3e-06  Score=67.63  Aligned_cols=77  Identities=18%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             CCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          302 LSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       302 ~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      -++.+..+|++.-.+.++.+|+.||.|+||.|+.+|+..++......+.....+...++.+.+|.|++++|+..|..
T Consensus        13 ~~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~   89 (91)
T 2pmy_A           13 NLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFLG   89 (91)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHHH
T ss_pred             cHHHHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH
Confidence            34455678999999999999999999999999999999999876533333334455568899999999999998763

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=97.81  E-value=7.3e-06  Score=66.60  Aligned_cols=98  Identities=17%  Similarity=0.208  Sum_probs=70.9

Q ss_pred             CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCce
Q 010548          229 PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSV  308 (507)
Q Consensus       229 ~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~  308 (507)
                      .++..+++.+.+.+.       .++.|+++.|+.+..+                                          
T Consensus         5 ~~t~~e~~~~~~~~d-------~~g~i~~~eF~~~~~~------------------------------------------   35 (108)
T 1rro_A            5 ILSAEDIAAALQECQ-------DPDTFEPQKFFQTSGL------------------------------------------   35 (108)
T ss_dssp             TSCHHHHHHHHHHTC-------STTCCCHHHHHHHHSG------------------------------------------
T ss_pred             cCCHHHHHHHHHHcc-------CCCCcCHHHHHHHHhc------------------------------------------
Confidence            456666666666653       3568999999987420                                          


Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                        +..-.+-++.+|+.||.|++|.|+.+|+..++....  +.+..   ...+...++.+.+|.|++++|+.++.
T Consensus        36 --~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 1rro_A           36 --SKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             --GGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             --CcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence              011245688999999999999999999999998763  33322   22344556789999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-20
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-04
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-19
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-06
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-17
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-05
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-16
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-04
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-15
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-06
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-15
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-08
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-15
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-05
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-14
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-09
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-14
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-06
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-14
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-07
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-14
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-08
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-14
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-06
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	8e-14
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-05
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-13
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-06
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-13
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-06
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-13
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	7e-06
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-13
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-06
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-12
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-06
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-12
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-09
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-12
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-04
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-12
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-06
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-12
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-06
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	9e-12
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-06
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-11
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-11
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-04
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-11
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	9e-05
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-11
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-06
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-11
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-08
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-10
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-05
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-10
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.002
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-10
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-06
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-10
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	5e-05
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-10
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	0.003
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-10
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-10
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-04
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	7e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-05
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-09
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-04
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-09
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-05
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	7e-09
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-08
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	7e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-08
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	6e-05
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.002
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-08
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.001
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-07
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-07
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-07
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-06
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	0.004
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-05
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-04
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	8e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-05
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	6e-04
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	0.002
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.003
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	0.003
d1uhka1	187	a.39.1.5 (A:3-189) Calcium-regulated photoprotein	0.004

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 5e-20
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 10/177 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ +  T + P + +P V              V + + DT+   +
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + D  ++ ++    ++   + + W PE+R      PII+ G KLDLR D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 132 NATSLEEVMGPI-------MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHPT 179
           +     +            +   +EI     +ECSA T   +  VF  A +AVL P 
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
            +C++ G    GK+ LL S+    F   Y PT  + Y
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 42

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 8e-19
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++ VVVGD   GK+ L+ +  T   P + VP V     +      +   + + DT+   +
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                     + D  ++ ++    S+   +   W+PE+     K P ++ G ++DLR D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 132 NATSLEEVMGPIMQQFREIE---------TCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
           +                  E           VECSA T   + +VF  A  A L P  P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 6e-06
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
            +C++ G    GK+ LL S+    F   Y PT  + YAV V
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV 44

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 7e-17
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           + VVVGD   GK+ L+ + A ++ PE+  P V     +       +  + + DT+   + 
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
                      D  ++ ++    ++   +   W+PEL+     VP ++ G ++DLR D  
Sbjct: 71  DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130

Query: 133 ATSLEEVMGPIM-------QQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
             +    M           +  +EI  C  VECSA T   +  VF  A  A+L P
Sbjct: 131 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
            +C++ G    GK+ LL S+    F E Y PT  + YAV+V
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 50

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.5 bits (179), Expect = 7e-16
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 11/175 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            ++VVVGD   GK++L+   A +  PE  VP V        +    R+ +++ DTS S  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD- 130
                      +DAV++ +  ++  TL  +   W  E++       +++ GCK DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 131 --------HNATSLEEVMGPIMQQFREIETCVECSATTMI-QVPDVFYYAQKAVL 176
                   H  T +    G  M +     T +ECSA      V D+F+ A  A +
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           + ++ G    GK+ALL+ F +  F ENY PT  E Y
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 39

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 2e-15
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 10/166 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           + +++GD G GKS L+     +      P                 ++ + I DT+    
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   ++ Y   ++ST + LSS+             II+ G K DL    
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAV 175
           + T  E       +QF E      +E SA T   V D F  A K +
Sbjct: 126 DVTYEE------AKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 18/85 (21%), Positives = 38/85 (44%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G    GKS LL+ F E+ F  +   T G ++   +++  G   K  I     +
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 483 EGVKKILSNKEALASCDVTIFVYDR 507
           E  + +  +    A+  + ++   R
Sbjct: 64  ERFRAVTRSYYRGAAGALMVYDITR 88

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (174), Expect = 3e-15
 Identities = 23/165 (13%), Positives = 57/165 (34%), Gaps = 6/165 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           +++++GD G GK+ ++   + ++                    D  R+ + I DT+    
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  ++L Y    + +   + ++           V  ++ G K D+    
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
             +        +    +     +E SA   I V + F+   + + 
Sbjct: 128 QVSKERGEKLALDYGIK----FMETSAKANINVENAFFTLARDIK 168

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GK+ +L  F E  F+  +  T G  + +  ++  G   K  I     +
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
           E  + I             + VYD
Sbjct: 66  ERFRTI--TTAYYRGAMGIMLVYD 87

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 8e-15
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 6/166 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP--VHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           + +++GD G GKS L+     +                   +    ++ + I DT+    
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y   ++ T + L+S+     +     + I++ G K D   + 
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD--LES 122

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                 E      ++   I   +E SA T   V + F    K +  
Sbjct: 123 RRDVKREEGEAFAREHGLI--FMETSAKTACNVEEAFINTAKEIYR 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLI 476
           +F+ ++ G    GKS LL  F ++ F   +  T G ++   +V+  G   K  I
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 56

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 7/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP--DFYPDRVPVTIIDTSSSLE 71
           +++++GD G GKS L+     +                   D    +V + I DT+    
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  ++L Y    + T + +  ++         +  +++ G K D+    
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 123

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                    G  + +   I   +E SA     V ++F+   K + 
Sbjct: 124 VTAD----QGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQ 163

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           ++ + LL G    GKS LL  F+E  F+ ++  T G  + +  VD  G   K  I     
Sbjct: 1   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60

Query: 482 EEGVKKILSNKEALASCDVTIFVYD 506
           +E  + I             I VYD
Sbjct: 61  QERFRTI--TTAYYRGAMGIILVYD 83

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 4e-14
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTIIDTSSSLE 71
           + +V+G+ GTGKS L+     +   +                       + I DT+    
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y    + T + L+++           + II+ G K       
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK-----KD 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVLH 177
                E       +  +E E   +E SA T   V + F    + +L+
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ L+ G    GKS LL+ F+E+ F ++   T G ++   +++  G   K  I     +
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
           E  + +   +         + VYD
Sbjct: 65  ERFRSV--TRSYYRGAAGALLVYD 86

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 5e-14
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           ++V++G+ G GK+ L+        P           +      +   V   I DT+    
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A+A++LTY    + +   L  +     +    KV  ++ G K+D     
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID---LA 123

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY-AQKAVLH 177
               + +       + +++   +E SA     V  +F   A + +  
Sbjct: 124 ERREVSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISE 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
           +F+ +L G    GK+ L+  F +  F      T G  + +  V+  G   K  I 
Sbjct: 5   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 59

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (166), Expect = 6e-14
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 6/170 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF--YPDRVPVTIIDTSSSLE 71
           +++++G+ G GKS L+   + ++                        V + I DT+    
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +   +   + +  +++ Y    Q + + +  +     R     V  ++ G K DL+   
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
                         +   +ET     A     V D F    + +    + 
Sbjct: 128 VVEYDVAKEFADANKMPFLETS----ALDSTNVEDAFLTMARQIKESMSQ 173

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (120), Expect = 6e-08
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ LL G    GKS LL  F +  ++ +Y  T G  + +  V+  G   K  I     +
Sbjct: 6   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
           E  + I S+          I VYD
Sbjct: 66  ERFRTITSS--YYRGSHGIIIVYD 87

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 6e-14
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +VVV+G  G GKS+L     T +  EK  P +    R   +       + I+DT+ + + 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH 131
               +  +K     +L Y+   Q +   +       +R     KVP+I+ G K+DL  + 
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLH 177
             +S E       +   E   C  +E SA +   V ++F    + + +
Sbjct: 125 EVSSSE------GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 9e-06
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           ++ ++ G    GKSAL   F+   F E Y PT  + Y
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY 40

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 8e-14
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++V+VGD   GK+ L+   + +  PE   P      +       +     +  ++ LE+ 
Sbjct: 4   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 63

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
            +L        D +++ ++ +   +L  +   W PE++     VPII+ G K DLR D +
Sbjct: 64  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 123

Query: 133 ATSLEEVMGPIMQQFREIE---------TCVECSATTMIQVPDVFYYAQKAVL 176
                  M     +  E             +ECSA T   V +VF  A +A L
Sbjct: 124 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNK 472
            + ++ G    GK+ LL    +  F E Y PT  E Y  ++       +
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVE 51

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 2e-13
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 8/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           ++V +G++  GK+SLI     +S             L    Y +   +   + DT+    
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +  +   ++ + A V+ Y     ++  + + +           V I++ G K DL    
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAV 175
                +  +    ++ +E+    +E SA     V  +F     A+
Sbjct: 122 -----QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLI 476
           F+ +  G Q+ GK++L+  F+   F   Y  T G  +    +       +  +
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQL 53

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 3e-13
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPD--RVPVTIIDTSSSLE 71
           +VV++GD G GKS+L++         +                D   +   I DT+    
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +   +   + A   +L Y   +  T   +  +        +  + I++ G K DLR   
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
              + E              + +E SA     V + F      +  
Sbjct: 126 AVPTDEARAFAEKNNL----SFIETSALDSTNVEEAFKNILTEIYR 167

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ +L G    GKS LL+ F    F+     T G ++A   +   G   K  I     +
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
           E  ++I             + VYD
Sbjct: 64  ERYRRI--TSAYYRGAVGALLVYD 85

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 65.3 bits (158), Expect = 3e-13
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 8/166 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +V++VG  G GKS+L      +   E   P  A +               I  ++  E+ 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGD 130
             + +   R  +  +  ++  +  + +  ++ +  ++ R++    VP ++ G K DL   
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAA-TADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
              +  E        Q+      VE SA T   V  VF+   + + 
Sbjct: 125 RQVSVEE--AKNRADQWN--VNYVETSAKTRANVDKVFFDLMREIR 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
            + ++ G    GKSAL   F+   F E+Y PT  + Y
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.7 bits (159), Expect = 3e-13
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 8/166 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA--PTRLPPDFYPDRVPVTIIDTSSSLE 71
           +++++G+   GK+S +   A +S                       R+ + I DT+    
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A   +L Y    + + + +  +             +++ G K       
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK-----CD 121

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
                        Q    +     E SA   I V   F      + 
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ L+ G  + GK++ L  + +  F+  +  T G  + V  + +     K  I     +E
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 484 GVKKILSNKEALASCDVTIFVYD 506
             + I             I +YD
Sbjct: 66  RYRTI--TTAYYRGAMGFILMYD 86

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 4e-12
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 9/166 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++VVVG  G GKS+L          ++  P    +            +  I  ++  E  
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDH 131
             + ++  R     L       +        +  +++R++    VP+++ G K DL    
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
             +             R      +E SA T   V D FY   + + 
Sbjct: 125 VESR------QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           ++ ++ G    GKSAL    ++  F + Y PT  + Y
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 40

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (149), Expect = 5e-12
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT---IIDTSSSL 70
           +V+++GD G GK+SL+     +   ++         L  +   D   V    + DT+   
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK----VPIIVAGCKLD 126
             +       + AD  VL Y     S+   + S+    L    +      P ++ G K+D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 127 LRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
                   S E+    + +   +I      SA   I V   F    ++ L 
Sbjct: 124 AEESKKIVS-EKSAQELAKSLGDIP-LFLTSAKNAINVDTAFEEIARSALQ 172

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 7e-09
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           N+ + ++ G    GK++L++ ++   +S+ Y  T G  +    V   G    T+ + +  
Sbjct: 1   NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA 60

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 7e-12
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 7/165 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYP---DRVPVTIIDTSSSL 70
           +V++VGD G GK+ L+      +                        +V + + DT+   
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
             +   +   + A A++L Y    +++   + ++        +  V +++ G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                 +   G  + +   +   +E SA T + V   F    K +
Sbjct: 128 RVVKRED---GEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKEL 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSEN-YAPTTGEQYAVNVVDQPGGNKKTLIL 477
            F+ +L G    GK+ LL  F +  F    +  T G  +   V+D  G   K  + 
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 8e-12
 Identities = 33/169 (19%), Positives = 52/169 (30%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVP-PVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +V+++GD G GKSSL+    T     ++   +                   I  ++  E 
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDL 127
              L     R     L       S   +  S W  E             P ++ G K+D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                +T   E      +   +     E SA     V   F  A + VL
Sbjct: 128 SERQVST---EEAQAWCRDNGDYP-YFETSAKDATNVAAAFEEAVRRVL 172

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLI 476
           + ++F+ +L G    GKS+L+N ++   F      T G ++    ++  G      I
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 59

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 8e-12
 Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT--IIDTSSSLE 71
           +VV++G+   GK+SL+         +K       + L          V   I DT+    
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                    + ++  +L Y    + +  ++ ++     + L  ++ + + G K+DL  + 
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
           + +          + + E         SA     + ++F    K ++
Sbjct: 125 HVSI------QEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
           F+ +L G    GK++L+  + E  F++ +  T G  +    ++  G      I     +E
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 484 GVKKILSNKEALASCDVTIFVYD 506
               +          +  I VYD
Sbjct: 64  RFHAL--GPIYYRDSNGAILVYD 84

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 9e-12
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 5/164 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++VV+G  G GKS+L          EK  P +    R   +    +  + I+DT+ + + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
               +  +K      L Y+   QST + L       LR  + + VP+I+ G K DL  + 
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                +E    + +Q+      +E SA + I V ++FY   + +
Sbjct: 125 VVG--KEQGQNLARQWCNCA-FLESSAKSKINVNEIFYDLVRQI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ 467
           ++ ++ G    GKSAL   F++  F E Y PT  + Y   V   
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD 47

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRV-PVTIIDTSSSLE 71
            ++VVVG  G GKS+L              P    +             + I+DT+   E
Sbjct: 7   HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGD 130
                 + ++     +L +A N + + + +   +   LR  +    P+++ G K DL   
Sbjct: 67  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 126

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                                   E SA   + V + F    +AV 
Sbjct: 127 RQVPR----SEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
              + ++ G    GKSAL   F++  F  +Y PT  + Y
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY 43

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 1e-11
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           VR++++G    GK++L+   A+E +    P      +           + + D     + 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK---SVQSQGFKLNVWDIGGQRKI 73

Query: 73  KGKLNEELKRADAVVLTY-ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
           +       +  D ++    + +++                    VP+++   K DL    
Sbjct: 74  RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
            A+ + E +     + R  +    CSA T   V D  
Sbjct: 134 PASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGM 169

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPT 455
           S+ RK +       R LL G  NAGK+ LL        S      
Sbjct: 4   SILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ 48

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 2e-11
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 3/162 (1%)

Query: 11  TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSS 68
           T +++V++G+   GKSS++    +    E   P    A            V   I DT+ 
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 69  SLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
                       + A A ++ Y   +  +  +   +      +    + I + G K+D+ 
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170
            +     +    G  + + + +    E SA T   V DVF  
Sbjct: 122 QEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLG 162

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           + +L G    GKS+++  F+   F+EN  PT G  +
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF 40

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-11
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 8/172 (4%)

Query: 8   SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTS 67
           S +   R+VVVG  G GKS+L              P    +        DR     I  +
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 68  SSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI--KVPIIVAGCKL 125
           +  E  G + E+  R     L                +  ++ R++   + P+I+ G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 126 DLRGDHNATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYYAQKAVL 176
           DL      T  E       Q  R+++ T +E SA   + V   F+   + + 
Sbjct: 121 DLDHQRQVTQEE-----GQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           +  +R ++ G    GKSAL   F++  F  +Y PT  + Y
Sbjct: 3   QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY 42

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (141), Expect = 9e-11
 Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPP-VHAPTRLPPDFYPDR-VPVTIIDTSSSLE 71
           +V+++GD G GK+SL+     +    +    + A          DR V + I DT+    
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI----KVPIIVAGCKLDL 127
            +       + AD  VL +     +T   L S+    L +         P +V G K+DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                AT   +         +      E SA   I V   F    +  L
Sbjct: 124 ENRQVATKRAQ----AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (118), Expect = 9e-08
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGN 471
            + ++ G    GK++L+N ++ + FS  Y  T G  +    V      
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL 50

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 1e-10
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           ++V++G+   GKSSL+         E        A            V   I DT+    
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
                    + A A ++ Y    + + +R  ++     R+    + I ++G K DL    
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                E                +E SA T + V ++F    K + 
Sbjct: 128 AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMAIAKKLP 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           F+ +L G    GKS+L+  F++  F E    T G  +
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 43

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-10
 Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 9/158 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           R+++VG    GK++++       +   +P +              +  T+ D     + +
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE---TVEYKNISFTVWDVGGQDKIR 58

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDHN 132
                  +    ++     N +  ++      +  L   E++   ++V   K D     N
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD---LPN 115

Query: 133 ATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVF 168
           A +  E+   +                AT+   + +  
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 8/39 (20%), Positives = 11/39 (28%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
           R L+ G   AGK+ +L                     V 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 40

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 11/174 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           RV V G  G GKSSL+      +  E   P    T          +    I  ++     
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 74  GKLNEELKRADAVVLTYACNQQST---LSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
             +           +              +     + E++     +PI++ G K D    
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123

Query: 131 HNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHPTAPL 182
               S E       +       C  +E SA     V ++F          T  L
Sbjct: 124 REVQSSE------AEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVSL 171

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           N +R  +FG    GKS+L+  F++  F E+Y PT  + Y
Sbjct: 1   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 39

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 7/164 (4%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           ++V+VGD GTGK++ +    T    +K V  +                   +  ++  E 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
            G L +         +           +    W  +L R+   +PI++ G K+D++    
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 124

Query: 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                     I+   ++     + SA +       F +  + ++
Sbjct: 125 ------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           F+ +L G    GK+  +   L   F + Y  T G + 
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 40

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 16/163 (9%), Positives = 50/163 (30%), Gaps = 5/163 (3%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSS 68
           +    +V++VG    GK++++   +   V    P + +      +   +     + D   
Sbjct: 12  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE---EIVINNTRFLMWDIGG 68

Query: 69  SLENKGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDL 127
               +   N      + V++     +++         +         K  +++   K D+
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 128

Query: 128 RGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY 170
           +       + + +     +  +      C A T   +     +
Sbjct: 129 KECMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEW 170

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD 466
            + ++ G  NAGK+ +L  F                  + + +
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 4e-10
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G    GK++++           +P V              V   + D     + 
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKI 69

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
           +            ++    C  +  +          +   E++   I++   K DL    
Sbjct: 70  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
               ++E +G    + R         AT+   + +  
Sbjct: 130 KPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGL 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 5e-10
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 7/166 (4%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R+ V+GD  +GKSSLI    T S            +           V I + + + + 
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
           K     +      V      N    +SRL              + + + G +  +     
Sbjct: 66  KFSGWAD--AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSP 123

Query: 133 ATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
               +           +++ C   E  AT  + V  VF    + V+
Sbjct: 124 RVVGDA---RARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 9e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
            R  + G   +GKS+L++ FL   +      T  EQY
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQY 41

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 56.1 bits (134), Expect = 7e-10
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G  G GK++++       V    P +              + + + D       
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE---TLSYKNLKLNVWDLGGQTSI 74

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRGDH 131
           +           AV+       +  +S  S      L+  E++   ++V   K D  G  
Sbjct: 75  RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL 134

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
           +A+ + + +  +  + R     V  SA     + +  
Sbjct: 135 SASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGL 170

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 9e-10
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 2/156 (1%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           + + +VG + +GK++ +   A+    E + P               + +  I       +
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
             +       A   ++  A  ++   S+   + L +  +L+  +P++V G K DL G  +
Sbjct: 63  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ-GIPVLVLGNKRDLPGALD 121

Query: 133 ATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
              L E M     Q REI  C   S      +    
Sbjct: 122 EKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITL 156

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPT 455
               L G Q +GK+  +N      F+E+  PT
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT 34

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 6/165 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDF-YPDRVPVTIIDTSSSLE 71
           ++V ++GD G GKSS++     +S    + P    + +     Y + +   +I  ++ LE
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 72  NKGKLNEE-LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
               L     + + A ++ Y   ++ T S L ++     +     + + +AG K DL   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV 175
                 E            I   VE SA   I + ++F    + +
Sbjct: 125 REVM--ERDAKDYADSIHAI--FVETSAKNAININELFIEISRRI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTT 456
            +  L G    GKS+++  F+E  F  N  PT 
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI 37

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVP--VTIIDTSSSLE 71
           +++++G+ G GKSSL+     ++   ++               D     + I DT+    
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
            +       + A  V+L Y   ++ T  +L ++             + +      L G+ 
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM------LVGNK 122

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
                 EV      +F    +   +E SA T   V   F    + ++  
Sbjct: 123 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLI 476
            + L+ G    GKS+LL  F +  F    A T G  + V  +   G   K  I
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 7e-09
 Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 17/177 (9%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPP------------VHAPTRLPPDFYPDRVP 60
           ++++ +GD G GK++ +          K                +A           +V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 61  VTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPII 119
           + + DT+     +       + A   +L +    Q +   + ++          +   I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 120 VAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
           + G K       +   + E     +     I    E SA T   V          ++
Sbjct: 126 LIGNK---ADLPDQREVNERQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIM 178

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 8e-07
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
           + + L  G    GK+  L  + +  F+  +  T G  +    V
Sbjct: 5   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV 47

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           ++VVVGD G GKS+L      +       P    + L      ++  +  +  ++  E  
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 74  GKLNEELKR-ADAVVLTYACNQQSTLSRLSSYWLPELRRLE-IKVPIIVAGCKLDLRGDH 131
             + E+  R  D  ++ Y+   +++   +  +    LR  +    P+I+   K+DL    
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 132 NATSLEEVMGPIMQQFREIETC--VECSA-TTMIQVPDVFYYAQKAVL 176
                  V     ++         +E SA    + V   F+   + + 
Sbjct: 126 K------VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           ++ ++ G    GKSAL   F ++ F  +Y PT  + Y
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY 41

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           V++ + G  G GKS+L+    T+    +  P    T        D V    I  ++  E+
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 73  KGKLNEELKRADAVVLTYA-CNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH 131
             +    ++  +  VL Y   ++ S    L    + +  +    V +I+ G K DL    
Sbjct: 63  TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 122

Query: 132 NATSLEEVMGPIMQQFREIE-TCVECSATT-MIQVPDVFYYAQKAVL 176
             ++ E       +   E+     ECSA T    + ++FY   + V 
Sbjct: 123 QVSTEE-----GEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
            +  +FG    GKSAL+  FL + F   Y PT    Y
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 39

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G    GK++++     E V    P +    +           + I D       
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK---TLEHRGFKLNIWDVGGQKSL 59

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KVPIIVAGCKLDLRGDH 131
           +       +  D ++       +  +          L    +    +++   K DL G  
Sbjct: 60  RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 119

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
           +  +++E +     +         CSA T   +    
Sbjct: 120 SCNAIQEALELDSIRSHHWR-IQGCSAVTGEDLLPGI 155

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPT 455
            R L+ G  NAGK+ +L  F         +PT
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPT 33

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 5e-08
 Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 5/157 (3%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           +R++++G  G GK++++       V   +P +              +   + D       
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG---FNVETVTYKNLKFQVWDLGGLTSI 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH 131
           +          DAV+       +  +    S  +  L   E++   ++V   K D+    
Sbjct: 63  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122

Query: 132 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
            ++ +   +G    + R+ +   + SAT    + +  
Sbjct: 123 TSSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAM 158

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 7/29 (24%), Positives = 10/29 (34%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENY 452
            R L+ G   AGK+ +L            
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTI 34

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTII--DTSSSL 70
           +++VVVG+   GKSS+I         +          L      +   V ++  DT+   
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
           E         + A A VL ++   + +   +SS+    +  +   +P  +   K+DL  D
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 121

Query: 131 HNATSLEEVMGPIMQQFREIE-TCVECSATTMIQVPDVFYY-AQKAV 175
                            + ++      S    + V +VF Y A+K +
Sbjct: 122 SCIK-----NEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
           + ++ G    GKS+++  + +  F+++Y  T G  +    +    
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND 48

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
           +F+ ++ G  N GK+ L   F    F +    T G  +    VD  G   K  +     +
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 483 EGVKKILSNKEALASCDVTIFVY 505
           E  +K    +    +    +FVY
Sbjct: 62  ERFRK-SMVQHYYRNVHAVVFVY 83

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 15/166 (9%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL-PPDFYPDRVPVTIIDTSSSLEN 72
           +++V+GD   GK+ L         P++                        +  ++  E 
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 73  KGKLNEEL--KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VPIIVAGCKLDLRG 129
             K   +   +   AVV  Y     ++   L ++     + L    +P I+ G K DLR 
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 130 DHNATSLEEVMGPIMQQFREIETC--VECSATTM---IQVPDVFYY 170
                +         Q+F +  +    E SA        V  +F  
Sbjct: 124 AIQVPTDL------AQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 163

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 21/163 (12%), Positives = 51/163 (31%), Gaps = 12/163 (7%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +++ +G    GK++L+     + +    P  H  +    +     +  T  D    ++ +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQAR 58

Query: 74  GKLNEELKRADAVVLTYAC-NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN 132
               +     + +V      + +                    VP ++ G K+D     +
Sbjct: 59  RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 118

Query: 133 ATSLEEVMGPI-------MQQFREIETCVECSATTMIQVPDVF 168
              L   +G +       ++  R +E    CS        + F
Sbjct: 119 EAELRSALGLLNTTGSQRIEGQRPVE-VFMCSVVMRNGYLEAF 160

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
           + L  G  NAGK+ LL+       +    PT         +         L    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHI 55

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 3/163 (1%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
           +V+++G  G GKS+L           +                +   + + D       +
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA 133
                 +   DA V+ Y+   + +  + S   +   R  +     I+             
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122

Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
            S++E  G       + +  +E SA     V  +F    + + 
Sbjct: 123 VSVDE--GRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIR 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
           V++ LL G    GKSAL   F         A   G  Y
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY 37

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 9/168 (5%)

Query: 14  RVVVVGDRGTGKSSLIA--AAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
           RVV++G++G GKS+L    A   +S+      +   T              I+      +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 72  NKGKLNEELKRADAVVLTYACNQ---QSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR 128
            + +   +             +     S              R    +PII+ G K DL 
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVL 176
                +  E     ++   +     +E SA     V ++F    + V 
Sbjct: 125 RCREVSVSEGRACAVVFDCK----FIETSAAVQHNVKELFEGIVRQVR 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 22/58 (37%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
           +R +L G Q  GKS L N F     S +       +          G   T+IL ++ 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 17/169 (10%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH--APTRLPPDFYPDRVPVTIIDTSSSL 70
            ++V +G    GK++L+     + + + VP +H  +              +     +  +
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73

Query: 71  ENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
                              +    +S     S      +      VPI++ G K+D    
Sbjct: 74  WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA----NVPILILGNKIDRPEA 129

Query: 131 HNATSLEEVMGPIMQQFREIE-----------TCVECSATTMIQVPDVF 168
            +   L E+ G   Q   +                 CS        + F
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 178

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 11/167 (6%)

Query: 9   SRTGVRVVVVGDRGTGKSSLIAA----AATESVPEKVPPVHAPTRLPPDFYPDRVPVTII 64
             + + V V G+ G+GKSS I         E    K   V       P  +P+   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 65  DTSSSLENKGKLNEELKR---ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVA 121
           D           +  L++    +          +   + +       +  ++ +   +  
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI--DIAKAISMMKKEFYFVRT 170

Query: 122 GCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
               D+  + +          ++Q  R    CV       I  P +F
Sbjct: 171 KVDSDITNEADGEPQTFDKEKVLQDIRLN--CVNTFRENGIAEPPIF 215

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 10/163 (6%)

Query: 13  VRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLE 71
            ++ ++G R  GKSSL          +   P +                + ++DT+   E
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 72  NKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGD 130
                       +  +L Y+     +   +       L    ++++PI++ G K DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124

Query: 131 HNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYA 171
              +  E       +   E      +E SA       DVF   
Sbjct: 125 RVISYEE------GKALAESWNAAFLESSAKENQTAVDVFRRI 161

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
            +  + G ++ GKS+L   F+E  F ++Y PT    +   +
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI 45

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 16/131 (12%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 15  VVVVGDRGTGKSSLIAAAATESVPEKVPPV--HAPTRLPPDFYPDRVPVTIIDTSSSLEN 72
           V+ VG   +GK+ L     T    +    +   +      +   + + +  +    SL  
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 73  KGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK---VPIIVAGCKLDLRG 129
           +     +      V +  +   Q  +  ++ +    L           +++A  K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 130 DHNATSLEEVM 140
             +A  +++ +
Sbjct: 123 AKSAKLIQQQL 133

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQ 467
           R V   L  G  ++GK+ L    L   + +    +  +  A+  V+ 
Sbjct: 1   RAV---LFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNN 43

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 6/117 (5%)

Query: 393 YVGYGGDPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSE-- 450
           + G      A    T+   +    +Q + N    L+ G    GKS+ +NS +        
Sbjct: 4   WSGINTFAPAT--QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSIS 61

Query: 451 NYAPTTGE--QYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVY 505
            +          + +          T  L E        +   K  L    + + +Y
Sbjct: 62  PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLY 118

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 20/188 (10%)

Query: 14  RVVVVGDRGTGKSSLIAA-AATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDT------ 66
            V +VG    GKS+L++  ++ +              L      D     + D       
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62

Query: 67  SSSLENKG-KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRR-----LEIKVPIIV 120
           +      G +    ++R   +V     +          Y               + P I+
Sbjct: 63  AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 121 AGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV-LHPT 179
              K+D+          E +    ++  +       SA T   + ++ +     +   P 
Sbjct: 123 VANKMDMPEA------AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 176

Query: 180 APLFDHDE 187
            PL+D +E
Sbjct: 177 FPLYDEEE 184

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG 457
            + LL G   +GKS  +          +  PTTG
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTG 34

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 14  RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK 73
            +++ G + +GK+SL+    T+SV   V      +    D     +           +  
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLS 64

Query: 74  GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLR 128
             L    K    ++              ++ +L ++  +     E  + I++A  K +L 
Sbjct: 65  DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 124

Query: 129 GDHNATSLEEVMGPIMQQFREI 150
                + +++ +   +Q+  E 
Sbjct: 125 TARPPSKIKDALESEIQKVIER 146

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTG 457
           + + LL G   +GKS  L             PT G
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG 33

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 23/192 (11%), Positives = 46/192 (23%), Gaps = 25/192 (13%)

Query: 183 FDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQ----PAEIVGV 238
           FD+         +   K +F   D + +G ++  E+           L      A+    
Sbjct: 5   FDNPRW------IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKD 58

Query: 239 KRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPV 298
                         +      ++            +      +       +     F  V
Sbjct: 59  AVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKY----AKNEPTLIRIWGDALFDIV 114

Query: 299 PTKLSPDQSVELASE---------AVEFLRGIFGLYDIDNDGAVRPAELEDLFLT--APE 347
               +   +++             + E     F + DID  G +   E+    L      
Sbjct: 115 DKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTM 174

Query: 348 SPWDEAPYKDAA 359
            P  E  Y  A 
Sbjct: 175 DPACEKLYGGAV 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.95
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.95
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.95
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.94
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.94
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.93
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.92
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.89
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.88
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.86
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.85
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.83
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.82
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.81
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.81
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.8
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.79
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.78
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.78
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.78
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.76
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.75
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.74
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.74
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.73
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.7
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.68
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.65
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.65
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.62
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.62
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.61
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.59
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.59
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.58
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.56
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.54
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.54
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.54
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.54
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.52
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.51
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.49
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.49
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.48
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.46
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.43
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.42
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.42
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.41
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.4
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.4
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.38
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.36
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.32
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.32
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.3
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.29
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.27
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.27
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.23
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.22
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.2
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.19
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.17
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.15
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.15
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.11
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.09
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.09
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.07
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.0
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.98
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.97
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.96
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.95
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.83
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.8
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.72
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.7
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.63
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.57
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	98.57
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	98.54
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.54
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.53
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	98.5
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.5
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.48
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	98.46
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.42
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.41
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.41
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.37
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	98.37
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.36
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.35
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.34
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	98.34
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.32
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.31
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	98.31
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	98.31
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	98.3
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	98.28
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	98.27
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	98.21
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	98.19
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	98.16
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	98.16
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.15
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.14
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	98.13
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	98.12
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.11
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	98.03
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	98.02
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	97.91
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	97.89
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.87
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	97.86
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	97.84
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.84
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	97.77
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	97.74
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.74
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	97.74
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.73
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.72
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	97.72
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	97.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.71
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.71
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	97.69
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	97.69
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	97.67
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.64
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	97.64
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	97.62
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	97.6
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	97.59
d1okkd2	207	GTPase domain of the signal recognition particle r	97.56
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.52
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.5
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	97.49
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	97.48
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	97.48
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	97.46
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	97.42
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	97.42
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.41
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	97.4
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	97.39
d1ij5a_	321	Cbp40 (plasmodial specific CaII-binding protein LA	97.39
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	97.37
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	97.34
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	97.32
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	97.32
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	97.31
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	97.29
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	97.28
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	97.27
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	97.25
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	97.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.25
d1psra_	100	Calcyclin (S100) {Human (Homo sapiens), psoriasin	97.25
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	97.24
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	97.21
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1cb1a_	78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	97.1
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	97.05
d1e8aa_	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	97.05
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	97.03
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.02
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	97.02
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.93
d1qx2a_	76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	96.91
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	96.89
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	96.84
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.81
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.8
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.78
d3c1va1	93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	96.78
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	96.74
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	96.73
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	96.73
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	96.67
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	96.63
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	96.63
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	96.56
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.54
d1xk4a1	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	96.53
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	96.51
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	96.46
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.44
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	96.4
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.4
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	96.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.31
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	96.28
d2zkmx1	170	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	96.27
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.26
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.23
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	96.18
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.12
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	96.11
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	96.1
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.1
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	96.1
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	96.08
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.06
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.98
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.85
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	95.77
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	95.77
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.75
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.7
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	95.69
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	95.69
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.67
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.65
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.62
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	95.61
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	95.56
d1ij5a_	321	Cbp40 (plasmodial specific CaII-binding protein LA	95.54
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.54
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.52
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.51
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	95.5
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.49
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	95.49
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	95.48
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.46
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.46
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.46
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.41
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.4
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	95.37
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.33
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.32
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	95.3
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	95.26
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.17
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.16
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	95.16
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	95.16
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.14
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.13
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	95.12
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.1
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	95.09
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.08
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.02
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.02
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	95.01
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.96
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.94
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.94
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.94
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.92
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.91
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.84
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.82
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.82
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	94.78
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.76
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.75
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.73
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.73
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	94.72
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.68
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.64
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.62
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.61
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.61
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.6
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.55
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.52
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.51
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.48
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.48
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.45
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.42
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.41
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.41
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.41
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.38
d3cr5x1	90	Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId:	94.35
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.34
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.34
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.3
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.29
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.28
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.24
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.21
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.21
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.16
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.12
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.1
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.1
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.07
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	94.04
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.04
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.91
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	93.85
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	93.84
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.83
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.82
d1qlsa_	95	Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s1	93.81
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.77
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.77
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.74
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.73
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.72
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.67
d1xk4a1	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	93.67
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	93.65
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.63
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.61
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.6
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	93.6
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.6
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.6
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.59
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.56
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.56
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.54
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.53
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	93.5
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.45
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.43
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.4
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.4
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.39
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	93.38
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.36
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	93.35
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.33
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	93.28
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	93.28
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.23
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.17
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.13
d1tuza_	118	Diacylglycerol kinase alpha, N-terminal domain {Hu	93.1
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.09
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	93.07
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.06
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.04
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.02
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.98
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	92.95
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.95
d2zkmx1	170	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	92.91
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.88
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.85
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	92.78
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.76
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.7
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.64
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.63
d1j55a_	94	Calcyclin (S100) {Human (Homo sapiens), s100p [Tax	92.57
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.52
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.49
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	92.49
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.47
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.39
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	92.24
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	92.22
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.19
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.13
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.12
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	92.08
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.98
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	91.92
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	91.88
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	91.87
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	91.87
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.85
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.85
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	91.79
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.78
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.67
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	91.61
d1sraa_	151	C-terminal (EC) domain of BM-40/SPARC/osteonectin	91.54
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	91.54
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.53
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.5
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	91.5
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	91.49
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.41
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	91.34
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	91.34
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	91.09
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.08
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	91.01
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	91.0
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.88
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.87
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	90.84
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	90.65
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	90.57
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	90.44
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	90.42
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	90.42
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	90.28
d1e8aa_	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	90.24
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	90.13

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=229.32  Aligned_cols=172  Identities=23%  Similarity=0.342  Sum_probs=142.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhcc
Q 010548            4 GSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (507)
Q Consensus         4 m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (507)
                      |+..+....+||+|+|++|||||||++||+++.|...+.++.. ............+.+.+|||+|++.+...+..+++.
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~   80 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   80 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence            3444456789999999999999999999999998877555443 333434455667899999999999999999999999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhccc
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREI  150 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~  150 (507)
                      +|++++|||++++.||+++...|...++...++.|+++|+||+|+...            +.+  ..++...++++++..
T Consensus        81 a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v--~~~~~~~~a~~~~~~  158 (185)
T d2atxa1          81 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI--CVEQGQKLAKEIGAC  158 (185)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC--CHHHHHHHHHHHTCS
T ss_pred             cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccc--cHHHHHHHHHHcCCC
Confidence            999999999999999999887788888888789999999999999752            222  345567788888743


Q ss_pred             CcEEEeCcccCCCchHHHHHHHHHHcCC
Q 010548          151 ETCVECSATTMIQVPDVFYYAQKAVLHP  178 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~l~~~i~~~i~~~  178 (507)
                       +|+||||++|.||+++|+.++++++.|
T Consensus       159 -~~~E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         159 -CYVECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             -CEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             -EEEEecCCCCcCHHHHHHHHHHHHcCC
Confidence             799999999999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=222.50  Aligned_cols=170  Identities=25%  Similarity=0.353  Sum_probs=141.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .++.+||+|+|++|||||||+++|+++.|...+.++..... .....+...+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            35679999999999999999999999998887655444332 44455566789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      +|||++++.||+++...|...++....++|++||+||+|+...+..          .........++++++.. +|+|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~E~S  160 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV-KYLECS  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS-EEEECC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCc-eEEEcC
Confidence            9999999999999987788888888778999999999998654211          01233455666776643 799999


Q ss_pred             cccCCCchHHHHHHHHHHcCCC
Q 010548          158 ATTMIQVPDVFYYAQKAVLHPT  179 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i~~~~  179 (507)
                      |++|.||+++|+.|++.++.|+
T Consensus       161 Ak~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCCC
Confidence            9999999999999999998774

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.2e-28  Score=219.31  Aligned_cols=160  Identities=20%  Similarity=0.270  Sum_probs=136.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-e-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-T-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||+++|+++.+...+.++... . ..........+.+.+|||+|..++......+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            379999999999999999999999887775554332 2 23334445578899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ||++++.|++.+.. |++.+.+..+++|+++||||+|+..++.+  ..+++..++++++.  +|++|||++|.||+++|+
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~iilVgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~~v~e~f~  156 (164)
T d1z2aa1          82 FSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLKL--RFYRTSVKEDLNVSEVFK  156 (164)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--EEEECBTTTTBSSHHHHH
T ss_pred             Eeccchhhhhhccc-ccccccccCCCceEEEeeccCCcccceee--eehhhHHHHHHcCC--EEEEeccCCCcCHHHHHH
Confidence            99999999999886 99999887778999999999999877665  34556778888874  799999999999999999


Q ss_pred             HHHHHHc
Q 010548          170 YAQKAVL  176 (507)
Q Consensus       170 ~i~~~i~  176 (507)
                      .|++.++
T Consensus       157 ~l~~~~l  163 (164)
T d1z2aa1         157 YLAEKHL  163 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-28  Score=220.37  Aligned_cols=164  Identities=24%  Similarity=0.381  Sum_probs=136.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +.||+|+|++|||||||+++++++.|...+.++... ...........+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            479999999999999999999999988776554332 2233445566789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc----------cchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA----------TSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      |++++.||+++...|.+.++...+++|++||+||+|+...+..          ....++...++++++.. +|+||||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~-~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF-GYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS-EEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCc-EEEEecCCC
Confidence            9999999999988788888888889999999999999754211          02344567788887653 799999999


Q ss_pred             CCCchHHHHHHHHHHc
Q 010548          161 MIQVPDVFYYAQKAVL  176 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~  176 (507)
                      |.||+++|+.|+++++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=219.10  Aligned_cols=159  Identities=19%  Similarity=0.187  Sum_probs=121.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +||+++|++|||||||+++|.+..+....++....++....++...+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            79999999999999999999998765544444444444455566789999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      +++.|++.+.. |...+....  .++|+++||||+|+...+.+  ...+...+++.++.  +|++|||++|.||+++|+.
T Consensus        82 t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          82 TDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFDC--KFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTS--EEEECBTTTTBSHHHHHHH
T ss_pred             ccccccccccc-ccchhhcccccccceEEEeecccchhhhcch--hHHHHHHHHHhcCC--EEEEEeCCCCcCHHHHHHH
Confidence            99999999986 888876643  46899999999999876665  34566778888874  7999999999999999999


Q ss_pred             HHHHHc
Q 010548          171 AQKAVL  176 (507)
Q Consensus       171 i~~~i~  176 (507)
                      |++.+.
T Consensus       157 l~~~i~  162 (168)
T d2gjsa1         157 VVRQIR  162 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-28  Score=219.34  Aligned_cols=165  Identities=18%  Similarity=0.245  Sum_probs=137.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAV   86 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~i   86 (507)
                      ++.+.+||+|+|++|||||||+++|+++.|...+.++.... .....++...+.+.+|||+|.+++...+..+++.+|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            34567999999999999999999999999887766544332 23345556678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCc
Q 010548           87 VLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQV  164 (507)
Q Consensus        87 l~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi  164 (507)
                      |+|||++++.|++.+.. |...+.+.  ..+.|++|||||+|+...+..  ..+....+++.++.  +|++|||++|.||
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sak~g~gv  156 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHHV--AYFEASAKLRLNV  156 (173)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSH
T ss_pred             eeecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhcccc--chhhhhHHHHhcCC--EEEEEeCCCCcCH
Confidence            99999999999999986 87776543  357899999999999876655  44567788888764  7999999999999


Q ss_pred             hHHHHHHHHHHcC
Q 010548          165 PDVFYYAQKAVLH  177 (507)
Q Consensus       165 ~~l~~~i~~~i~~  177 (507)
                      +++|+.|++.+..
T Consensus       157 ~e~f~~l~~~i~k  169 (173)
T d2fn4a1         157 DEAFEQLVRAVRK  169 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987743

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-28  Score=217.03  Aligned_cols=163  Identities=24%  Similarity=0.323  Sum_probs=136.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      |+.+||++||++|||||||++|++.+.|...+.++.. ............+.+.+||++|+..+...+..+++.+|++|+
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            4679999999999999999999999999887655443 333444556778999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.|++.+.. |...+.+.  .++.|+++||||+|+......  ..++...+++++... +|++|||++|.||++
T Consensus        81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e  156 (167)
T d1c1ya_          81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWCNC-AFLESSAKSKINVNE  156 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTSC-EEEECBTTTTBSHHH
T ss_pred             eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCccccccc--chhHHHHHHHHhCCC-EEEEEcCCCCcCHHH
Confidence            999999999999987 77766543  357999999999999876655  445566777776543 799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|+.|++.+.
T Consensus       157 ~F~~l~~~i~  166 (167)
T d1c1ya_         157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.7e-28  Score=220.05  Aligned_cols=171  Identities=23%  Similarity=0.381  Sum_probs=140.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      |+.+||+++|++|||||||++||+++.|...+.++..... .........+.+.+|||+|++++...+..+++.+|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            3468999999999999999999999998877655443322 334445567899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCC----------ccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN----------ATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      |||+++++||+++...|...+....++.|+++|+||+|+.....          .....++...+++.++.. +|++|||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~e~SA  159 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAV-KYVECSA  159 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS-CEEECCT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCC-eEEEEeC
Confidence            99999999999998878888888778999999999999864311          002445667777777643 7999999


Q ss_pred             ccCCCchHHHHHHHHHHcCCCCC
Q 010548          159 TTMIQVPDVFYYAQKAVLHPTAP  181 (507)
Q Consensus       159 ~~g~gi~~l~~~i~~~i~~~~~~  181 (507)
                      ++|.||+++|+.+++.++.+..+
T Consensus       160 k~~~~V~e~f~~l~~~~~~~~~~  182 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEPPEP  182 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSCCST
T ss_pred             CCCcCHHHHHHHHHHHHhcCcCC
Confidence            99999999999999988877554

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.6e-28  Score=216.18  Aligned_cols=162  Identities=22%  Similarity=0.289  Sum_probs=136.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ++.+||+++|++|||||||++||+++.|...+.++.... .....++...+.+.+||++|.+.+......+++.+|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            467999999999999999999999999888766655433 2444555667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.++..+.. |...+...  .+++|++|||||+|+...+.+  ..++...+++.++.  ++++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREV--SSSEGRALAEEWGC--PFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--CEEEECTTCHHHHHH
T ss_pred             eeeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccc--hHHHHHHHHHHcCC--eEEEECCCCCcCHHH
Confidence            999999999999987 77766553  357999999999999876665  34556777777764  699999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|+.|++.+.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999988763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.95  E-value=9.8e-28  Score=214.29  Aligned_cols=161  Identities=20%  Similarity=0.310  Sum_probs=133.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      +.+||+|+|++|||||||+++++++.|...+.++.. .+.....++...+.+.+||++|.+++..+...+++.+|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            568999999999999999999999998877655443 3334445566778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ||++++.+++.+.. |++.+.+.  .+++|+++|+||+|+...+.+  ..++...+++.++.  ++++|||++|.||+++
T Consensus        83 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~gv~e~  157 (168)
T d1u8za_          83 FSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWNV--NYVETSAKTRANVDKV  157 (168)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEECCTTTCTTHHHH
T ss_pred             eeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEeccccccccccc--cHHHHHHHHHHcCC--eEEEEcCCCCcCHHHH
Confidence            99999999999986 88887654  357999999999999876665  44567788888874  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |+.|++.+.
T Consensus       158 f~~l~~~i~  166 (168)
T d1u8za_         158 FFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.3e-27  Score=213.74  Aligned_cols=162  Identities=17%  Similarity=0.238  Sum_probs=137.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC-eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+.+||+++|++|||||||+++++++.+...+.++... ......++...+.+.+||++|.+.+......+++.+|++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            45799999999999999999999999987776554432 33444556678999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC-Cch
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI-QVP  165 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~  165 (507)
                      |||++++.||..+.. |...+.+.  ..+.|+|+|+||+|+...+.+  ..+++..++++++.  +|++|||+++. ||+
T Consensus        82 v~d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v--~~e~~~~~~~~~~~--~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          82 VYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKV--TRDQGKEMATKYNI--PYIETSAKDPPLNVD  156 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHTC--CEEEEBCSSSCBSHH
T ss_pred             ecccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhcee--ehhhHHHHHHHcCC--EEEEEcCCCCCcCHH
Confidence            999999999999987 88877654  247999999999999887776  34567888888874  79999999886 999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|+.|++.+.
T Consensus       157 ~~F~~l~~~i~  167 (169)
T d1x1ra1         157 KTFHDLVRVIR  167 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-27  Score=212.94  Aligned_cols=161  Identities=21%  Similarity=0.324  Sum_probs=134.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ++.+||+|+|++|||||||++||+++.|...+.++.....  ...........+.+|||+|++.+..+...+++.+|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            4679999999999999999999999998877665444333  22233344677899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.+++.+.. |...+++. .++.|+++|+||+|+...+.+  ..++...+++.++.  +|++|||++|.||++
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~SAk~~~nV~e  156 (167)
T d1z0ja1          82 IVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIHA--IFVETSAKNAININE  156 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred             EEeeechhhhhhhHHH-hhhhhhhccCCcceEEEecccchhccccch--hHHHHHHHHHHcCC--EEEEEecCCCCCHHH
Confidence            9999999999999987 66665543 458999999999999876665  45567788888874  799999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +|..|++.+
T Consensus       157 ~f~~l~~~i  165 (167)
T d1z0ja1         157 LFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=211.71  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=132.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+|+|++|||||||++||+++++...+.+......  .........+.+.+||++|++.+......+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999999998777655443322  23334456789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      |++++.|++.+.. |+..+.+ ..++.|+++||||+|+.+.+.+  ..+....+++.++.  +|++|||++|.||+++|+
T Consensus        81 d~~~~~s~~~i~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~SAk~g~~v~e~f~  155 (164)
T d1yzqa1          81 DITNVNSFQQTTK-WIDDVRTERGSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELNV--MFIETSAKAGYNVKQLFR  155 (164)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHHHH
T ss_pred             ccccccchhhhHh-hHHHHHHhcCCCceEEEEecccchhhhhhh--hHHHHHHHHHHcCC--EEEEecCCCCcCHHHHHH
Confidence            9999999999987 6666554 4568999999999999876665  34567778888764  699999999999999999


Q ss_pred             HHHHHHc
Q 010548          170 YAQKAVL  176 (507)
Q Consensus       170 ~i~~~i~  176 (507)
                      .|++++.
T Consensus       156 ~i~~~l~  162 (164)
T d1yzqa1         156 RVAAALP  162 (164)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhhC
Confidence            9998763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=214.41  Aligned_cols=160  Identities=21%  Similarity=0.240  Sum_probs=132.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+++|++|||||||+++|+++.|...+.++.... .....++...+.+.+|||+|.+.+......+++.+|++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            5899999999999999999999999877765544432 233344556788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHh---cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~---~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |+++++|++.+.. |...+.+   ...++|+++||||+|+...+.+  ..+++..+++.++.  +|++|||++|.||+++
T Consensus        82 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v--~~~e~~~~~~~~~~--~~~e~Sak~~~~v~e~  156 (171)
T d2erxa1          82 SITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREV--QSSEAEALARTWKC--AFMETSAKLNHNVKEL  156 (171)
T ss_dssp             ETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHHHH
T ss_pred             ecccccchhcccc-hhhhhhhhhccCCCCcEEEEeecccccccccc--cHHHHHHHHHHcCC--eEEEEcCCCCcCHHHH
Confidence            9999999999986 7666543   2357999999999999877666  34567788888874  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |+.|++.+.
T Consensus       157 f~~l~~~~~  165 (171)
T d2erxa1         157 FQELLNLEK  165 (171)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHHH
Confidence            999998653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=213.54  Aligned_cols=161  Identities=17%  Similarity=0.270  Sum_probs=129.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+|+|++|||||||++||+++.|...+.++.....  .........+.+.+||++|+.++..++..+++++|++|+|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            58999999999999999999999999887666444333  3334445678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||+++++||+.+.. |+..+... ....|+++||||+|+..++.+  ..+++..++++++.  +|++|||++|.||+++|
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v--~~~e~~~~a~~~~~--~~~e~Sak~~~~v~e~F  157 (167)
T d1z08a1          83 YDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNKIDLEKERHV--SIQEAESYAESVGA--KHYHTSAKQNKGIEELF  157 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHGGGSEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEEEBTTTTBSHHHHH
T ss_pred             EeCCchhHHHhhhh-hhhhcccccccccceeeecccccccccccc--chHHHHHHHHHcCC--eEEEEecCCCcCHHHHH
Confidence            99999999999987 76665543 357899999999999887766  34567788888874  79999999999999999


Q ss_pred             HHHHHHHcC
Q 010548          169 YYAQKAVLH  177 (507)
Q Consensus       169 ~~i~~~i~~  177 (507)
                      +.|++.+++
T Consensus       158 ~~l~~~i~~  166 (167)
T d1z08a1         158 LDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999988754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-27  Score=212.59  Aligned_cols=162  Identities=19%  Similarity=0.275  Sum_probs=132.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ...+||+|+|++|||||||+++++++.|...+.++.. ..+....++...+.+.+||++|..++......+++.+|++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            4569999999999999999999999998777554433 333444555667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.|++.+.. |...+.+.  ..+.|+|+|+||+|+...+.+  ..++...+++.++.  +|++|||++|.||++
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~~~~i~e  157 (171)
T d2erya1          83 VFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQV--TQEEGQQLARQLKV--TYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSS--CHHHHHHHHHHTTC--EEEECBTTTTBSHHH
T ss_pred             eeccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccc--hHHHHHHHHHHcCC--EEEEEcCCCCcCHHH
Confidence            999999999999986 77665543  347999999999999877666  44567788888874  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|+.|++.+.
T Consensus       158 ~f~~l~~~i~  167 (171)
T d2erya1         158 AFHELVRVIR  167 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.7e-27  Score=212.97  Aligned_cols=162  Identities=15%  Similarity=0.205  Sum_probs=132.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+++|++|||||||+++|+++.+...+.+......  .........+.+.+|||||++++..++..+++.+|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            358999999999999999999999988776555333222  233334556889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |||++++.++..+.. |...++. ...+.|+++|+||+|+...+.+  ..++...+++..+.  +|++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~gv~e~  158 (169)
T d3raba_          84 MYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLGF--EFFEASAKDNINVKQT  158 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHCCSCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECBTTTTBSHHHH
T ss_pred             EEECccchhhhhhhh-hhhhhhcccCCcceEEEEEeeccccccccc--chhhhHHHHHHcCC--EEEEecCCCCcCHHHH
Confidence            999999999999887 5555554 3457999999999999876665  34556777888774  7999999999999999


Q ss_pred             HHHHHHHHcC
Q 010548          168 FYYAQKAVLH  177 (507)
Q Consensus       168 ~~~i~~~i~~  177 (507)
                      |+.|++.+++
T Consensus       159 f~~l~~~i~e  168 (169)
T d3raba_         159 FERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.1e-28  Score=214.23  Aligned_cols=161  Identities=17%  Similarity=0.187  Sum_probs=135.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+.+||+|+|++|||||||+++|+++.|...+.++.. .++....++...+.+.+|||+|.+.+..+...+++.+|++|+
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            3568999999999999999999999998777544333 334444566677899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.|++.+.. |...+.+.  ..++|+++||||+|+...+.+  ..+++..++++++.  +|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v--~~~~~~~~a~~~~~--~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWNA--AFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccch--hHHHHHHHHHHcCC--EEEEEecCCCCCHHH
Confidence            999999999999986 87776543  347999999999999877665  34566788888874  799999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +|+.|++.+
T Consensus       157 ~f~~li~~~  165 (167)
T d1xtqa1         157 VFRRIILEA  165 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-27  Score=210.73  Aligned_cols=159  Identities=24%  Similarity=0.315  Sum_probs=132.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+|+|++|||||||+++++++.+....++... ... ....+....+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999998777554332 222 3344556678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||+++..|++.+.. |...+++. ....|+++|+||+|+......  ..+++..+++.++.  ++++|||++|.||+++|
T Consensus        84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Saktg~~v~e~f  158 (166)
T d1z0fa1          84 YDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEAQRDV--TYEEAKQFAEENGL--LFLEASAKTGENVEDAF  158 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHHH
T ss_pred             eccCchHHHHHHHH-HHHHHHhhccccceEEEEcccccchhhccc--HHHHHHHHHHHcCC--EEEEEeCCCCCCHHHHH
Confidence            99999999999887 66666654 457999999999999766555  44567778888764  79999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      +.|++.+
T Consensus       159 ~~i~~~i  165 (166)
T d1z0fa1         159 LEAAKKI  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=212.84  Aligned_cols=160  Identities=19%  Similarity=0.277  Sum_probs=131.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+|+|++|||||||+++|+++.+.....+......  ....+....+++.+|||+|++++..++..+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            58999999999999999999999988776544333221  3344556678899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||++++.++..+.. |...+.+ ...+.|+++|+||+|+.....+  ..+.+..+++..+.  ++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v--~~~~~~~~~~~~~~--~~~~~SAktg~gV~e~f  159 (171)
T d2ew1a1          85 YDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQDM--YYLETSAKESDNVEKLF  159 (171)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHTC--CEEECCTTTCTTHHHHH
T ss_pred             eecccchhhhhhhh-hhhhhcccccccccEEEEEeecccccccch--hhhHHHHHHHhCCC--EEEEEccCCCCCHHHHH
Confidence            99999999999987 6666544 4457999999999998876555  34556777877764  79999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      ..|++.++
T Consensus       160 ~~l~~~l~  167 (171)
T d2ew1a1         160 LDLACRLI  167 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.7e-28  Score=216.81  Aligned_cols=161  Identities=17%  Similarity=0.270  Sum_probs=128.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||+++|+++.|...+.++.. .. ..........+.+.+|||+|+..+..++..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999988777554333 22 23344556678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFY  169 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  169 (507)
                      ||++++.|++.+.. |+..+.+..+++|+++||||+|+......    .....++...+.  +|++|||++|.||+++|+
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~~~~~piilvgnK~Dl~~~~~~----~~~~~~~~~~~~--~~~e~Sak~~~~v~e~f~  155 (170)
T d1i2ma_          83 FDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKNL--QYYDISAKSNYNFEKPFL  155 (170)
T ss_dssp             EETTSGGGGTTHHH-HHHHHHHHHCSCCEEEEEECCCCSCSCCT----TTSHHHHSSCSS--EEEEEBTTTTBTTTHHHH
T ss_pred             cccccccccchhHH-HHHHHhhccCCCceeeecchhhhhhhhhh----hHHHHHHHHcCC--EEEEEeCCCCCCHHHHHH
Confidence            99999999999987 88888776678999999999999776443    223445555543  799999999999999999


Q ss_pred             HHHHHHcCCC
Q 010548          170 YAQKAVLHPT  179 (507)
Q Consensus       170 ~i~~~i~~~~  179 (507)
                      +|++.++..+
T Consensus       156 ~l~~~l~~~~  165 (170)
T d1i2ma_         156 WLARKLIGDP  165 (170)
T ss_dssp             HHHHHHHTCT
T ss_pred             HHHHHHccCC
Confidence            9999887543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-27  Score=209.49  Aligned_cols=161  Identities=20%  Similarity=0.253  Sum_probs=133.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--CCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--PPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+++|++|||||||+++|+++.|...+.++......  ........+.+.+|||+|++.+...+..+++.+|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            3689999999999999999999999987776654443332  23333456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHH-HhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l-~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |||.++..+++.+.. |...+ +...++.|+++|+||+|+...+.+  ..+....+++.++.  +|++|||++|.||+++
T Consensus        85 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v--~~e~~~~~~~~~~~--~~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_          85 VYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLANKRAV--DFQEAQSYADDNSL--LFMETSAKTSMNVNEI  159 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHH
T ss_pred             EeccchhhHHHHHHH-HhhhhhhccCCCceEEeecccccccccccc--cHHHHHHHHHhcCC--EEEEeeCCCCCCHHHH
Confidence            999999999999987 55555 445568999999999999877666  34567777877764  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |+.|++.+.
T Consensus       160 f~~l~~~i~  168 (170)
T d1r2qa_         160 FMAIAKKLP  168 (170)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHHHh
Confidence            999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5.7e-27  Score=211.53  Aligned_cols=163  Identities=26%  Similarity=0.378  Sum_probs=136.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      ++||+++|++|||||||++|++.+.|...+.++.. ........+...+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999877655433 23344455667899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC------------CCccchhhhhHHHHHHhcccCcEEEeCc
Q 010548           91 ACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD------------HNATSLEEVMGPIMQQFREIETCVECSA  158 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA  158 (507)
                      |++++.||+.+...|...++...++.|+++||||+|+...            +.+  ..++...++++++. .+|+||||
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V--~~~e~~~~a~~~~~-~~y~E~SA  158 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV--SYDQGANMAKQIGA-ATYIECSA  158 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC--CHHHHHHHHHHHTC-SEEEECBT
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcc--hHHHHHHHHHHhCC-CeEEEEeC
Confidence            9999999999988788888888789999999999998642            222  34556678887764 37999999


Q ss_pred             ccCC-CchHHHHHHHHHHcC
Q 010548          159 TTMI-QVPDVFYYAQKAVLH  177 (507)
Q Consensus       159 ~~g~-gi~~l~~~i~~~i~~  177 (507)
                      ++|. ||+++|+.+++.++.
T Consensus       159 k~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         159 LQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            9998 599999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.7e-27  Score=210.11  Aligned_cols=162  Identities=20%  Similarity=0.270  Sum_probs=121.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC---CcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      .+||+++|++|||||||+++|+++.+...+.++.......   .........+.+|||+|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999999877755433332211   1222345778999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc-----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      |||++++.|++.+.. |.+.+...     ..++|+++|+||+|+...+.. ...+....+++.++.. +|++|||++|.|
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~~~-~~~e~SA~~g~g  158 (175)
T d1ky3a_          82 VYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAKSLGDI-PLFLTSAKNAIN  158 (175)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTTSC-CEEEEBTTTTBS
T ss_pred             Eeecccccccchhhh-cchhhhhhhhhcccccCcEEEEecccchhhhhcc-hhHHHHHHHHHHcCCC-eEEEEeCCCCcC
Confidence            999999999999875 88887653     237899999999999876554 3556677888888754 799999999999


Q ss_pred             chHHHHHHHHHHc
Q 010548          164 VPDVFYYAQKAVL  176 (507)
Q Consensus       164 i~~l~~~i~~~i~  176 (507)
                      |+++|++|++.++
T Consensus       159 v~e~f~~l~~~~l  171 (175)
T d1ky3a_         159 VDTAFEEIARSAL  171 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.7e-27  Score=207.61  Aligned_cols=161  Identities=20%  Similarity=0.326  Sum_probs=134.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCe-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ++.+||+++|++|||||||+++|+++.+...+.++.... ..........+.+.+||++|.+.+......+++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            356999999999999999999999999877755543322 2333444567899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |||++++.+++.+.. |...+.+.  .+++|+++|+||+|+.... +  ..+.+..+++.++.  +|++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~--~~~~~~~~~~~~~~--~~~e~Sak~g~gi~e  154 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLAART-V--ESRQAQDLARSYGI--PYIETSAKTRQGVED  154 (166)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTCSSCCEEEEEECTTCSCCC-S--CHHHHHHHHHHHTC--CEEECCTTTCTTHHH
T ss_pred             eecccccccHHHHHH-HHHHHHHhcCCCCCeEEEEeccccccccc-c--cHHHHHHHHHHhCC--eEEEEcCCCCcCHHH
Confidence            999999999999886 99888764  3479999999999986532 2  34567788888874  799999999999999


Q ss_pred             HHHHHHHHHc
Q 010548          167 VFYYAQKAVL  176 (507)
Q Consensus       167 l~~~i~~~i~  176 (507)
                      +|+.|++.+.
T Consensus       155 ~f~~i~~~i~  164 (166)
T d1ctqa_         155 AFYTLVREIR  164 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=207.64  Aligned_cols=160  Identities=20%  Similarity=0.281  Sum_probs=129.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCC-CCee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVH-APTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~-~~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+|+|++|||||||+++++++++...+.+.. .... .........+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            4799999999999999999999998876644322 2222 2223334568999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||++++.|++.+.. |+..+.+. ..++|++||+||+|+...+..  ..+....+++.++.  +|++|||++|.||+++|
T Consensus        83 ~d~~~~~sf~~~~~-~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~a~~~~~--~~~e~Sa~tg~~V~e~f  157 (173)
T d2a5ja1          83 YDITRRETFNHLTS-WLEDARQHSSSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHGL--IFMETSAKTACNVEEAF  157 (173)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHTC--EEEEECTTTCTTHHHHH
T ss_pred             EeecChHHHHhHHH-HHHHHHHhCCCCCeEEEEecCCchhhhhhh--HHHHHHHHHHHcCC--EEEEecCCCCCCHHHHH
Confidence            99999999999987 66666554 468999999999998776555  44567778877764  79999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      ..|++.+.
T Consensus       158 ~~i~~~i~  165 (173)
T d2a5ja1         158 INTAKEIY  165 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=208.18  Aligned_cols=161  Identities=22%  Similarity=0.250  Sum_probs=131.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+||+++|++|||||||+++|+++++...+.++.....  .....+.....+.+|||+|++++..+++.+++.+|++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            358999999999999999999999998777665443332  223334557889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           89 TYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |||.+++.++..+.. |...+.. ..+++|+++|+||+|+......  ..+....+++.++.  +|++|||++|.||+++
T Consensus        84 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~--~~~e~Sak~~~gi~e~  158 (174)
T d2bmea1          84 VYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDADREV--TFLEASRFAQENEL--MFLETSALTGENVEEA  158 (174)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHH
T ss_pred             EEecccchhHHHHhh-hhcccccccCCceEEEEEEecccccchhch--hhhHHHHHHHhCCC--EEEEeeCCCCcCHHHH
Confidence            999999999999987 6555544 4568999999999998766555  34556677777763  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |++|++.++
T Consensus       159 f~~l~~~i~  167 (174)
T d2bmea1         159 FVQCARKIL  167 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=205.07  Aligned_cols=162  Identities=17%  Similarity=0.207  Sum_probs=124.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKV-PPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~-~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ..+||+|+|++|||||||+++++++.+.... ++......  .........+.+.+|||+|++.+..++..+++.+|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4689999999999999999999998876553 33222222  23344455689999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      +|||++++.|+..+...|....+......|+++|+||+|+.....+  ..+.+..+++.++.  +|++|||++|.||+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~gi~e~  160 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYGL--PFMETSAKTGLNVDLA  160 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHTC--CEEECCTTTCTTHHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccc--cHHHHHHHHHHcCC--EEEEEeCCCCcCHHHH
Confidence            9999999999999988454545555567999999999999887666  34566777887764  7999999999999999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |+.|++.+.
T Consensus       161 f~~l~~~i~  169 (170)
T d2g6ba1         161 FTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcC
Confidence            999998763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-26  Score=206.27  Aligned_cols=159  Identities=20%  Similarity=0.257  Sum_probs=127.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+|+|++|||||||+++++++.+.....+......  ....++...+.+.+|||+|.+.+...+..+++.+|++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            58999999999999999999999988776544333222  3334455678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||.+++.|+..+.. |+..+.+. .+++|+++||||+|+.+.+..  ..+........++.  ++++|||++|.||+++|
T Consensus        84 ~d~~~~~S~~~~~~-~~~~i~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~g~~i~e~f  158 (175)
T d2f9la1          84 YDIAKHLTYENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNNL--SFIETSALDSTNVEEAF  158 (175)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--EEEECCTTTCTTHHHHH
T ss_pred             EECCCcccchhHHH-HHHHHHHhcCCCCcEEEEEeeecccccccc--hHHHHHHhhcccCc--eEEEEecCCCcCHHHHH
Confidence            99999999999987 77777665 357999999999999876544  23334455555543  79999999999999999


Q ss_pred             HHHHHHH
Q 010548          169 YYAQKAV  175 (507)
Q Consensus       169 ~~i~~~i  175 (507)
                      +.+++.+
T Consensus       159 ~~l~~~i  165 (175)
T d2f9la1         159 KNILTEI  165 (175)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-26  Score=204.97  Aligned_cols=159  Identities=21%  Similarity=0.302  Sum_probs=129.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-CeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      .+||+++|++|||||||++|++++.|...+.++.. .+......+...+.+.+|||+|...+. ....+++.+|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            48999999999999999999999998887665443 233334445667899999999987764 5567899999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHH--hcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC-chHH
Q 010548           91 ACNQQSTLSRLSSYWLPELR--RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ-VPDV  167 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l  167 (507)
                      |++++.|+..+.. |...+.  ....+.|+++||||+|+...+.+  ..+++..++++++.  +|++|||++|.| |+++
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V--~~~e~~~~a~~~~~--~~~e~Saktg~gnV~e~  155 (168)
T d2atva1          81 DITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQV--STEEGEKLATELAC--AFYECSACTGEGNITEI  155 (168)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHTS--EEEECCTTTCTTCHHHH
T ss_pred             ccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccC--cHHHHHHHHHHhCC--eEEEEccccCCcCHHHH
Confidence            9999999999986 554443  33458999999999999876665  44567788888874  799999999985 9999


Q ss_pred             HHHHHHHHc
Q 010548          168 FYYAQKAVL  176 (507)
Q Consensus       168 ~~~i~~~i~  176 (507)
                      |..|++.+.
T Consensus       156 F~~l~~~i~  164 (168)
T d2atva1         156 FYELCREVR  164 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.2e-26  Score=207.88  Aligned_cols=163  Identities=17%  Similarity=0.250  Sum_probs=134.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|+++.+...+.++.....  ....+....+.+.+|||||++.+..++..+++.||++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            3468999999999999999999999988777655444332  33445566889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHH-hcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELR-RLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.++..+.. |...+. ....++|+++|+||+|+.+....  ..+....++...+.  +|++|||++|.||++
T Consensus        84 ~v~d~t~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~~--~~~e~SAk~g~gi~e  158 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANKM--PFLETSALDSTNVED  158 (194)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTTC--CEEECCTTTCTTHHH
T ss_pred             EEEeCcchhhhhhHhh-hhhhhhhcccCCceEEEEEeccccccccch--hHHHHhhhhhccCc--ceEEEecCcCccHHH
Confidence            9999999999999987 555554 45568999999999999887665  34455666666653  699999999999999


Q ss_pred             HHHHHHHHHcC
Q 010548          167 VFYYAQKAVLH  177 (507)
Q Consensus       167 l~~~i~~~i~~  177 (507)
                      +|+.|++.+..
T Consensus       159 ~f~~l~~~i~~  169 (194)
T d2bcgy1         159 AFLTMARQIKE  169 (194)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9e-26  Score=201.73  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=131.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCC--eeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAP--TRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+||+++|++|||||||+++|+++.|...+.++...  .+.........+.+.+|||+|.+.+......+++.+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            589999999999999999999999988876654432  223445556678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHH-HHhcCCCCcEEEEEecccCCCC---CCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPE-LRRLEIKVPIIVAGCKLDLRGD---HNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~-l~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.|++.+.. |... .+......|+++|+||+|+...   +.+  ..++...+++..+.  +|++|||++|.||+
T Consensus        83 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v--~~~~~~~~~~~~~~--~~~e~Sak~g~gV~  157 (170)
T d1ek0a_          83 YDVTKPQSFIKARH-WVKELHEQASKDIIIALVGNKIDMLQEGGERKV--AREEGEKLAEEKGL--LFFETSAKTGENVN  157 (170)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS--CHHHHHHHHHHHTC--EEEECCTTTCTTHH
T ss_pred             EeCCcccchhhhhh-hhhhhccccccccceeeeecccccccccchhhh--hHHHHHHHHHHcCC--EEEEecCCCCcCHH
Confidence            99999999999987 5554 4445567999999999998654   233  44567788888774  79999999999999


Q ss_pred             HHHHHHHHHH
Q 010548          166 DVFYYAQKAV  175 (507)
Q Consensus       166 ~l~~~i~~~i  175 (507)
                      ++|..|++.+
T Consensus       158 e~F~~i~~~i  167 (170)
T d1ek0a_         158 DVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=201.37  Aligned_cols=162  Identities=21%  Similarity=0.274  Sum_probs=129.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .+.+||+|+|++|||||||+++|+++.+...+.++.....  .........+.+.+||++|..+.......++..+|+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            4568999999999999999999999998777665443332  22233345688999999999888888889999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMI  162 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  162 (507)
                      +|||.+++.|++.+.. |.+.+.+.     ..+.|+++||||+|+.+ +.+  ..+++..++++.+.. +|++|||++|.
T Consensus        84 ~~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v--~~~~~~~~~~~~~~~-~~~e~Sak~~~  158 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-RQV--STEEAQAWCRDNGDY-PYFETSAKDAT  158 (174)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSS--CHHHHHHHHHHTTCC-CEEECCTTTCT
T ss_pred             EEEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchhh-ccC--cHHHHHHHHHHcCCC-eEEEEcCCCCc
Confidence            9999999999999886 88877653     23689999999999965 333  345567777776543 79999999999


Q ss_pred             CchHHHHHHHHHHc
Q 010548          163 QVPDVFYYAQKAVL  176 (507)
Q Consensus       163 gi~~l~~~i~~~i~  176 (507)
                      ||+++|+.|++.++
T Consensus       159 gI~e~f~~l~~~il  172 (174)
T d1wmsa_         159 NVAAAFEEAVRRVL  172 (174)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=201.42  Aligned_cols=160  Identities=18%  Similarity=0.170  Sum_probs=126.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++++++.|....++....+.....++...+.+.+|||+|+..+     .+++.+|++|+|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            467999999999999999999999999866555544444444556667789999999997653     478999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhcC----CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           90 YACNQQSTLSRLSSYWLPELRRLE----IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~~----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      ||++++.||+.+.. |.+.+....    .+.|+++|+||.|+...............++.+.... +|++|||++|.||+
T Consensus        78 fd~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~-~~~e~SAk~~~~v~  155 (175)
T d2bmja1          78 FSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRC-SYYETCATYGLNVD  155 (175)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTE-EEEEEBTTTTBTHH
T ss_pred             eecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCC-eEEEeCCCCCcCHH
Confidence            99999999999886 888876432    3679999999999865433212344556665554432 79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|..+++.+.
T Consensus       156 ~~F~~l~~~i~  166 (175)
T d2bmja1         156 RVFQEVAQKVV  166 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.9e-25  Score=198.82  Aligned_cols=159  Identities=16%  Similarity=0.286  Sum_probs=127.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      -+||+++|++|||||||+++|+++++...+.++.. ... ....+....+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999998777544333 332 4445566778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHH-HhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548           90 YACNQQSTLSRLSSYWLPEL-RRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l-~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      ||.+++.|++.+.. |...+ .......|+++++||.|+.....   ..+....++..++.  ++++|||++|.||+++|
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~i~~~~k~d~~~~~~---~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~e~f  155 (166)
T d1g16a_          82 YDITDERTFTNIKQ-WFKTVNEHANDEAQLLLVGNKSDMETRVV---TADQGEALAKELGI--PFIESSAKNDDNVNEIF  155 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHSCTTCEEEEEEECTTCTTCCS---CHHHHHHHHHHHTC--CEEECBTTTTBSHHHHH
T ss_pred             EECCCccCHHHHHh-hhhhhhccccCcceeeeecchhhhhhhhh---hHHHHHHHHHhcCC--eEEEECCCCCCCHHHHH
Confidence            99999999999887 54444 44445789999999999865433   34567778888874  79999999999999999


Q ss_pred             HHHHHHHc
Q 010548          169 YYAQKAVL  176 (507)
Q Consensus       169 ~~i~~~i~  176 (507)
                      ++|++.+.
T Consensus       156 ~~l~~~i~  163 (166)
T d1g16a_         156 FTLAKLIQ  163 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.9e-26  Score=204.75  Aligned_cols=161  Identities=15%  Similarity=0.276  Sum_probs=102.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Ce-eeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PT-RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~-t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+||+|+|++|||||||+++|+++.+.....++.. .. .....+....+.+.+|||||++.+..++..+++++|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            3468999999999999999999999887665433222 11 133344455788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|||++++.|+..+.. |...+.. ...+.|+++|+||+|+......  ..++...++...+.  ++++|||++|.||++
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~~k~D~~~~~~~--~~~~~~~~~~~~~~--~~~e~Sa~~g~gv~e  158 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVNDKRQV--SKERGEKLALDYGI--KFMETSAKANINVEN  158 (173)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHSCTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHTC--EEEECCC---CCHHH
T ss_pred             EEEECCChhhHHHHHH-HHHHhhhhccCCceEEEEEecccchhhccc--HHHHHHHHHHhcCC--EEEEEeCCCCCCHHH
Confidence            9999999999999987 6666654 4557999999999999876655  33445666666663  799999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +|++|++.+
T Consensus       159 ~f~~l~~~i  167 (173)
T d2fu5c1         159 AFFTLARDI  167 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-25  Score=199.61  Aligned_cols=163  Identities=18%  Similarity=0.257  Sum_probs=134.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      .+.+||+++|++|||||||+++|.++.+...+.+......  ....+....+.+.+|||+|++++..++..+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            3568999999999999999999999998777655443322  33445566789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhcC--CCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRLE--IKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.+++.+.. |+..+.+..  ...|+++++||.|.... .+  ...+...+++.++.  ++++|||++|.||+
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~~~~-~v--~~~~~~~~~~~~~~--~~~e~Sa~tg~gv~  158 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKENR-EV--DRNEGLKFARKHSM--LFIEASAKTCDGVQ  158 (177)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSSC-CS--CHHHHHHHHHHTTC--EEEECCTTTCTTHH
T ss_pred             EEEECCCccccccchh-hhhhhcccccccceeeEEEeeccccccc-cc--cHHHHHHHHHHCCC--EEEEEeCCCCCCHH
Confidence            9999999999999886 888877653  36899999999997643 33  34556677888774  79999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 010548          166 DVFYYAQKAVLHP  178 (507)
Q Consensus       166 ~l~~~i~~~i~~~  178 (507)
                      ++|++|++.++++
T Consensus       159 e~f~~l~~~l~~~  171 (177)
T d1x3sa1         159 CAFEELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccC
Confidence            9999999988765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.3e-25  Score=196.96  Aligned_cols=156  Identities=19%  Similarity=0.315  Sum_probs=126.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchh-hhHHhhccCCEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKG-KLNEELKRADAVV   87 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~ad~il   87 (507)
                      +.+||+++|++|||||||+++|+++.+....+++.....  ....+......+.+||++|...... .++.+++.+|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999988777555443322  3344556678899999999876654 4667899999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc---CC
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT---MI  162 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~---g~  162 (507)
                      +|||++++.|++.+.. |+..+.+.  .+++|++|||||+|+...+.+  ..+++..++++++.  +|++|||++   +.
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~--~~~e~SAkt~~~~~  155 (165)
T d1z06a1          81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQV--PTDLAQKFADTHSM--PLFETSAKNPNDND  155 (165)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEECCSSSGGGGS
T ss_pred             EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhccch--hHHHHHHHHHHCCC--EEEEEecccCCcCc
Confidence            9999999999999976 88777654  347999999999999887666  44567788888874  799999997   56


Q ss_pred             CchHHHHHH
Q 010548          163 QVPDVFYYA  171 (507)
Q Consensus       163 gi~~l~~~i  171 (507)
                      ||+++|+.|
T Consensus       156 ~V~e~F~~l  164 (165)
T d1z06a1         156 HVEAIFMTL  164 (165)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHh
Confidence            999999876

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4.9e-25  Score=199.55  Aligned_cols=160  Identities=22%  Similarity=0.267  Sum_probs=127.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +||+|+|++|||||||+++|+++.|...+.++.....  .........+.+.+|||+|...+......++..+|++++||
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            7999999999999999999999998777665443322  33344456789999999999998888999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc-----CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL-----EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~-----~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      |.+++.++..+.. |++.+...     ..++|+++|+||+|+.+....   .+....++..... .++++|||++|.||+
T Consensus        83 d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-~~~~e~Sak~~~gI~  157 (184)
T d1vg8a_          83 DVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLENRQVA---TKRAQAWCYSKNN-IPYFETSAKEAINVE  157 (184)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSC---HHHHHHHHHHTTS-CCEEECBTTTTBSHH
T ss_pred             cccchhhhhcchh-hHHHHHHHhccccccCCCEEEEEEeecccccchh---HHHHHHHHHHhcC-CeEEEEcCCCCcCHH
Confidence            9999999999886 88877653     236899999999998764332   3334444444333 379999999999999


Q ss_pred             HHHHHHHHHHcC
Q 010548          166 DVFYYAQKAVLH  177 (507)
Q Consensus       166 ~l~~~i~~~i~~  177 (507)
                      ++|++|++.+..
T Consensus       158 e~f~~l~~~i~~  169 (184)
T d1vg8a_         158 QAFQTIARNALK  169 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=199.38  Aligned_cols=160  Identities=21%  Similarity=0.220  Sum_probs=123.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCC-eeeCCcccCCceEEEEEeCCCCccc-hhhhHHhhccCCEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAP-TRLPPDFYPDRVPVTIIDTSSSLEN-KGKLNEELKRADAVV   87 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~-~t~~~~~~~~~~~~~i~Dt~G~~~~-~~~~~~~~~~ad~il   87 (507)
                      -+||+++|++|||||||+++|++..+...  .++.... .+....++...+.+.+||+++.... ..+...+++.+|++|
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i   82 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL   82 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence            48999999999999999999998765432  2332222 2344455566788899997753221 224556789999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCch
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVP  165 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  165 (507)
                      +|||++++.|++.+.. |...+...  .+++|+++|+||+|+...+.+ . .++...+++.++.  +|++|||++|.||+
T Consensus        83 lvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v-~-~~~~~~~a~~~~~--~~~e~Sak~g~~i~  157 (172)
T d2g3ya1          83 IVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREV-S-VSEGRACAVVFDC--KFIETSAAVQHNVK  157 (172)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-C-HHHHHHHHHHHTC--EEEECBTTTTBSHH
T ss_pred             eeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccc-c-HHHHHHHHHHcCC--eEEEEeCCCCcCHH
Confidence            9999999999999986 87777653  357999999999999877666 3 4456778888774  79999999999999


Q ss_pred             HHHHHHHHHHc
Q 010548          166 DVFYYAQKAVL  176 (507)
Q Consensus       166 ~l~~~i~~~i~  176 (507)
                      ++|+.|++.+.
T Consensus       158 ~~f~~l~~~i~  168 (172)
T d2g3ya1         158 ELFEGIVRQVR  168 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998763

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.92  E-value=3.6e-25  Score=196.63  Aligned_cols=161  Identities=12%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +.+||+|+|++|||||||+++|.+..+....++ .. .. ...+..+++.+.+|||+|++.+......+++.++++++||
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t-~~-~~-~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPT-LG-FN-IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCC-SS-EE-EEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccce-Ee-ee-eeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            468999999999999999999998876433332 22 11 1234466789999999999988888999999999999999


Q ss_pred             eCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHH-Hhcc-cCcEEEeCcccCCCchHH
Q 010548           91 ACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQ-QFRE-IETCVECSATTMIQVPDV  167 (507)
Q Consensus        91 D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~SA~~g~gi~~l  167 (507)
                      |+++..++......|...+... ..++|+++|+||+|+.+....   .+....+.. .... ..++++|||++|+||.++
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             ecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH---HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            9999999999887666665433 357999999999999765443   111111111 1111 126899999999999999


Q ss_pred             HHHHHHHHcC
Q 010548          168 FYYAQKAVLH  177 (507)
Q Consensus       168 ~~~i~~~i~~  177 (507)
                      |++|.+.+..
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999987643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-26  Score=205.63  Aligned_cols=161  Identities=16%  Similarity=0.221  Sum_probs=128.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCC-Cee-eCCccc----------CCceEEEEEeCCCCccchhhhHH
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHA-PTR-LPPDFY----------PDRVPVTIIDTSSSLENKGKLNE   78 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~-~~t-~~~~~~----------~~~~~~~i~Dt~G~~~~~~~~~~   78 (507)
                      ..+||+|+|++|||||||+++|+++.+...+.++.. ... ....+.          ...+++.+|||+|++++..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            358999999999999999999999887665433211 110 111111          22468999999999999999999


Q ss_pred             hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEe
Q 010548           79 ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVEC  156 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (507)
                      +++++|++|+|||++++.+++.+.. |...+...  ..+.|+++|+||+|+...+.+  ..+++..++++++.  ++++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v--~~~e~~~~~~~~~~--~~~e~  158 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREV--NERQARELADKYGI--PYFET  158 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTTC--CEEEE
T ss_pred             HHhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhhhcc--hHHHHHHHHHHcCC--EEEEE
Confidence            9999999999999999999999886 87766543  346899999999999877666  44556788888874  79999


Q ss_pred             CcccCCCchHHHHHHHHHHc
Q 010548          157 SATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       157 SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ||++|.||+++|+.|.+.+.
T Consensus       159 Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         159 SAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             BTTTTBTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.92  E-value=1.9e-25  Score=200.64  Aligned_cols=161  Identities=16%  Similarity=0.202  Sum_probs=119.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEE
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVV   87 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il   87 (507)
                      ...+.+||+++|++|||||||+|+|.++.+....++.  +.+. ..+...++.+.+||++|.+.+...+..+++.+|+++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~-~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   88 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ--GFNI-KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEET--TEEE-EEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeee--eeeE-EEeccCCeeEeEeeccccccchhHHHHHhhccceeE
Confidence            3456799999999999999999999998864333221  1221 123345789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCc
Q 010548           88 LTYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQV  164 (507)
Q Consensus        88 ~V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi  164 (507)
                      +|||+++..++..+...|....... ..++|+++|+||+|+......   ....+.+....  ....++++|||++|+||
T Consensus        89 ~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH---HHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            9999999999999887344433322 247999999999999865433   11111111111  11236899999999999


Q ss_pred             hHHHHHHHHH
Q 010548          165 PDVFYYAQKA  174 (507)
Q Consensus       165 ~~l~~~i~~~  174 (507)
                      +++|++|++.
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=191.27  Aligned_cols=158  Identities=15%  Similarity=0.184  Sum_probs=120.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEe
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYA   91 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D   91 (507)
                      .+||+++|++|||||||+++|.++.+...+.++......  .+..+++.+.+||+||++.+...+..++..++++++|||
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   79 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD   79 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeeeEEEEEeeccccccccccccccccccchhhcccc
Confidence            589999999999999999999999887765553332222  234567899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCchHHH
Q 010548           92 CNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPDVF  168 (507)
Q Consensus        92 ~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~~l~  168 (507)
                      +++..++......|...++.. .+++|++||+||+|+......   .+....+....  ....++++|||++|.||+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          80 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhH---HHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            999999999887344444432 357999999999999764332   11111111111  111268999999999999999


Q ss_pred             HHHHHH
Q 010548          169 YYAQKA  174 (507)
Q Consensus       169 ~~i~~~  174 (507)
                      ++|++.
T Consensus       157 ~~l~~~  162 (164)
T d1zd9a1         157 QWLIQH  162 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.91  E-value=8.3e-25  Score=195.98  Aligned_cols=160  Identities=11%  Similarity=0.110  Sum_probs=119.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+++|++|||||||+++|+++.+....++..  .. ........+.+.+||+||...+...+..+++.++++++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~--~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FN-VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETT--EE-EEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceee--ee-EEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            467999999999999999999999877544333211  11 122335578999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHH-hc-ccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ-FR-EIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~SA~~g~gi~~  166 (507)
                      ||+++..++..+...|...++.. ..++|+++|+||+|+.+....   .+....+... .. ....+++|||++|+||++
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH---HHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999987455555433 347999999999999764332   1111111111 11 112589999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=9.1e-25  Score=197.38  Aligned_cols=161  Identities=15%  Similarity=0.139  Sum_probs=116.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEE
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVL   88 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~   88 (507)
                      ..+.+||+++|++|||||||+++|.+..+....++.....   ......++++.+||++|++.+...+..+++.+|++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   90 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV---ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   90 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE---EEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEE---EEEeeCCEEEEEEecccccccchhHHhhhccceeEEE
Confidence            4568999999999999999999998877644344322211   1223467899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCch
Q 010548           89 TYACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVP  165 (507)
Q Consensus        89 V~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~  165 (507)
                      |||++++.++......|...++.. ..++|+++|+||+|+.+....   .+....+....  ....++++|||++|+||+
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCH---HHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            999999999998876344444433 247999999999999764322   11111111111  111268999999999999


Q ss_pred             HHHHHHHHHH
Q 010548          166 DVFYYAQKAV  175 (507)
Q Consensus       166 ~l~~~i~~~i  175 (507)
                      ++|++|.+.+
T Consensus       168 e~~~~l~~~i  177 (182)
T d1moza_         168 EGLDWLIDVI  177 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.89  E-value=7.4e-23  Score=179.86  Aligned_cols=157  Identities=11%  Similarity=0.123  Sum_probs=117.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~   92 (507)
                      +||+|+|++|||||||+++|+++++....+......   .......+.+.+||++|...+......+++.++++++|+|.
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~   77 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   77 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE---EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE---EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEe
Confidence            599999999999999999999988765544432221   23345678999999999999988999999999999999999


Q ss_pred             CChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccc-hhhhhHHHHHHhcccCcEEEeCcccCCCchHHHHH
Q 010548           93 NQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATS-LEEVMGPIMQQFREIETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus        93 ~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      +++.++..+...+.+.+... ...+|+++++||+|+.+...... ........+...+  .++++|||++|+||+++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRN--WYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCC--EEEEECBTTTTBTHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCC--CEEEEeECCCCCCHHHHHHH
Confidence            99999999886344444332 24689999999999876533200 0011111112222  26899999999999999999


Q ss_pred             HHHH
Q 010548          171 AQKA  174 (507)
Q Consensus       171 i~~~  174 (507)
                      |.+.
T Consensus       156 l~~~  159 (160)
T d1r8sa_         156 LSNQ  159 (160)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=8.5e-23  Score=183.56  Aligned_cols=154  Identities=23%  Similarity=0.176  Sum_probs=113.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCC---cccCCceEEEEEeCCCCccchh--------hhHHhhc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPP---DFYPDRVPVTIIDTSSSLENKG--------KLNEELK   81 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~   81 (507)
                      -+|+|+|.+|||||||+|+|++.+..  .....+++|...   .....+..+.+|||||......        ....+++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVA--PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCce--eecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            37999999999999999999987632  222223333211   2234567899999999864332        2235678


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      .||++|+|+|++++.+...  ..|.+.++....++|+++|+||+|+...     .++....+.+.++. ..+++|||++|
T Consensus        84 ~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~-~~~~~iSA~~~  155 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-----PEEAMKAYHELLPE-AEPRMLSALDE  155 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-----HHHHHHHHHHTSTT-SEEEECCTTCH
T ss_pred             cccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-----HHHHHHHHHhhccc-CceEEEecCCC
Confidence            9999999999998766544  3377788877678999999999998653     23344555555553 36899999999


Q ss_pred             CCchHHHHHHHHHHc
Q 010548          162 IQVPDVFYYAQKAVL  176 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~  176 (507)
                      .||++|++.|.+.+.
T Consensus       156 ~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         156 RQVAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999988763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.5e-22  Score=177.20  Aligned_cols=149  Identities=26%  Similarity=0.325  Sum_probs=111.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh--------hHHhh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK--------LNEEL   80 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~   80 (507)
                      .+||+++|++|||||||+|+|++.+...  ....++++   +...+...+..+.++|++|..+....        ...++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAI--VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSC--CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceE--eecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHH
Confidence            4799999999999999999999877422  22222222   33344566789999999997644322        23567


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      ..+|++++++|..+..++..... |...++....++|+++|+||+|+..+...  ..        +.+. .+++++||++
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~iilv~NK~Dl~~~~~~--~~--------~~~~-~~~~~iSAk~  146 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEI-WPEFIARLPAKLPITVVRNKADITGETLG--MS--------EVNG-HALIRLSART  146 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHH-CHHHHHHSCTTCCEEEEEECHHHHCCCCE--EE--------EETT-EEEEECCTTT
T ss_pred             Hhccccceeeccccccchhhhhh-hhhhhhhcccccceeeccchhhhhhhHHH--HH--------HhCC-CcEEEEECCC
Confidence            89999999999999888777664 66677776668999999999998765332  11        1111 2689999999


Q ss_pred             CCCchHHHHHHHHH
Q 010548          161 MIQVPDVFYYAQKA  174 (507)
Q Consensus       161 g~gi~~l~~~i~~~  174 (507)
                      |.||++|+++|.+.
T Consensus       147 ~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         147 GEGVDVLRNHLKQS  160 (161)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.86  E-value=1.6e-21  Score=174.58  Aligned_cols=160  Identities=12%  Similarity=0.112  Sum_probs=114.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+|+|.+|||||||++||.++++....++...   ....+...+.++.+||+++.+........++..++++++|
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS---NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCS---SCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccce---eEEEEeecceEEEEeccccccccccchhhhhccceeeeee
Confidence            4679999999999999999999999886544333211   1112234578999999999998888999999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHH--hcccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQ--FREIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|.++..++......+...... ...+.|+++|+||+|+......   .+....+...  .....++++|||++|+||++
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH---HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            9999999988776523322222 2347999999999999765332   1111211111  11123699999999999999


Q ss_pred             HHHHHHHHH
Q 010548          167 VFYYAQKAV  175 (507)
Q Consensus       167 l~~~i~~~i  175 (507)
                      ++++|.+.+
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.85  E-value=2e-21  Score=174.63  Aligned_cols=164  Identities=15%  Similarity=0.148  Sum_probs=113.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCC----CCCee---eCCcccCCceEEEEEeCCCCccchhhhHHhhcc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPV----HAPTR---LPPDFYPDRVPVTIIDTSSSLENKGKLNEELKR   82 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~----~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   82 (507)
                      .+.++|+|+|++|+|||||+|+|++..........    ..+.+   ....+...+..+.++|++|+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            45689999999999999999999975422211111    11111   112223567889999999998888888899999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc--cCcEEEeCccc
Q 010548           83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE--IETCVECSATT  160 (507)
Q Consensus        83 ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~SA~~  160 (507)
                      +|++++|+|++++...+...  ....+...  ++|+++|+||+|+..........+....+.+....  ..++++|||++
T Consensus        83 ~d~~ilv~d~~~g~~~~~~~--~~~~~~~~--~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTGE--HMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchhhhh--hhhhhhhc--CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            99999999999876554432  44556665  79999999999997643220112223333332211  12789999999


Q ss_pred             CCCchHHHHHHHHHHcC
Q 010548          161 MIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~  177 (507)
                      |.|+++|++.|.+.+..
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999887643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.84  E-value=2e-20  Score=165.42  Aligned_cols=162  Identities=13%  Similarity=0.123  Sum_probs=120.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+.+||+|||++|||||||+++|+++.+....++..   ........+++.+.+||++|...........+..+++++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG---FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS---EEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccc---eeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            457999999999999999999999998765443211   12223345678999999999998888888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh--cccCcEEEeCcccCCCchH
Q 010548           90 YACNQQSTLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF--REIETCVECSATTMIQVPD  166 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~g~gi~~  166 (507)
                      +|+.+..++......+...++.. ....|+++|+||.|+......   .+....+...+  ....++++|||++|.||++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  156 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGTGLDE  156 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH---HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence            99999888888776444444432 347899999999999865332   11112221111  1123799999999999999


Q ss_pred             HHHHHHHHHcC
Q 010548          167 VFYYAQKAVLH  177 (507)
Q Consensus       167 l~~~i~~~i~~  177 (507)
                      +|++|.+.+..
T Consensus       157 ~~~~l~~~l~~  167 (169)
T d1upta_         157 AMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=3.7e-20  Score=167.10  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=109.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccch-----------
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENK-----------   73 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~-----------   73 (507)
                      .....+||+|+|++|||||||+|+|++.+..  .....+.++   ....+...+..+.++|++|.....           
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNKERA--LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTSTTE--EECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCcc--eeecccccccccceeeeccCCceeeeeccCCccccccccccccccch
Confidence            3445799999999999999999999987631  111112222   222344567889999999975322           


Q ss_pred             -hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc--cc
Q 010548           74 -GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EI  150 (507)
Q Consensus        74 -~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~  150 (507)
                       .....+++.+|++++|+|++.+...+..  .+...++..  ++|+|+|+||+|+...... ...+....+.....  ..
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~~~~~--~~~~~~~~~--~~~~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTT
T ss_pred             hHHHHHHHhcCCEEEEeecccccchhhHH--HHHHHHHHc--CCceeeeccchhhhcchhh-hhhhHHHHHHHHhcccCC
Confidence             2333567899999999999877554443  367777776  7899999999998765443 22332333333322  23


Q ss_pred             CcEEEeCcccCCCchHHHHHHHHHH
Q 010548          151 ETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       151 ~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      .+++++||++|.|+++|++.|.+.+
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3789999999999999999997654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3e-20  Score=166.97  Aligned_cols=157  Identities=19%  Similarity=0.170  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccch-------hhhHHhhccCCE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-------GKLNEELKRADA   85 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad~   85 (507)
                      .|+|+|++|||||||+|+|++...... ........++.......+.++.+|||||.....       ......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            499999999999999999998764222 111111112223344556789999999964321       123356789999


Q ss_pred             EEEEEeCCChh--hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           86 VVLTYACNQQS--TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        86 il~V~D~~~~~--s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      +++++|.....  +...... |+........++|+++|+||+|+......    +.........+  .+++++||++|.|
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~~~~~~~----~~~~~~~~~~~--~~~~~iSA~tg~g  155 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRK-EVGAYDPALLRRPSLVALNKVDLLEEEAV----KALADALAREG--LAVLPVSALTGAG  155 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHH-HHHHHCHHHHHSCEEEEEECCTTSCHHHH----HHHHHHHHTTT--SCEEECCTTTCTT
T ss_pred             hhhhcccccccccchhhhhh-hhhccccccchhhhhhhhhhhhhhhHHHH----HHHHHHHHhcC--CeEEEEEcCCCCC
Confidence            99999986542  2222221 33222222226899999999999764222    22222222222  3799999999999


Q ss_pred             chHHHHHHHHHHcC
Q 010548          164 VPDVFYYAQKAVLH  177 (507)
Q Consensus       164 i~~l~~~i~~~i~~  177 (507)
                      |++|++.|.+.+..
T Consensus       156 id~L~~~i~~~l~~  169 (180)
T d1udxa2         156 LPALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999888754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.9e-20  Score=164.72  Aligned_cols=152  Identities=16%  Similarity=0.141  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccch---------hhhHHhhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENK---------GKLNEELK   81 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~   81 (507)
                      +|+|+|++|||||||+|+|++....  .....+..|   ....+......+.++|++|.....         .....++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKA--IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcc--eecccCceeeccccccccccccccccccccceeeeeccccccccccccccccc
Confidence            6999999999999999999987632  222222223   222344567889999999964322         12234578


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccC
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTM  161 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  161 (507)
                      .+|+++++.|.+........  .+...+++.  ++|+|+|+||+|+..+.     ......-..+.+. ..++++||++|
T Consensus        80 ~ad~i~~~~~~~~~~~~~~~--~~~~~l~~~--~~pviiv~NK~Dl~~~~-----~~~~~~~~~~~~~-~~~i~iSAk~g  149 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLREF-----EREVKPELYSLGF-GEPIPVSAEHN  149 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHHH-----HHHTHHHHGGGSS-CSCEECBTTTT
T ss_pred             cCcEEEEeeccccccccccc--ccccccccc--cccccccchhhhhhhhh-----hhHHHHHHHhcCC-CCeEEEecCCC
Confidence            99999999998887666553  377778877  79999999999986431     1122122222332 25799999999


Q ss_pred             CCchHHHHHHHHHHcC
Q 010548          162 IQVPDVFYYAQKAVLH  177 (507)
Q Consensus       162 ~gi~~l~~~i~~~i~~  177 (507)
                      .||++++++|.+.+..
T Consensus       150 ~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         150 INLDTMLETIIKKLEE  165 (171)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999999987643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.9e-19  Score=158.12  Aligned_cols=153  Identities=14%  Similarity=0.257  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACN   93 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~   93 (507)
                      ||+++|++|||||||+|+|+++.+....+ +......  .....+..+.+||++|...+......+++.++++++++|.+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~-t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   78 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQP-TWHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA   78 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCSCEEE--EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeec-eeeEeEE--EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecccc
Confidence            89999999999999999999988754333 2222222  23345678999999999888888999999999999999999


Q ss_pred             ChhhHHHHHHhHHHHHHhc--CCCCcEEEEEecccCCCCCCccchhhhhHHHH-------HHh--cccCcEEEeCcccCC
Q 010548           94 QQSTLSRLSSYWLPELRRL--EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIM-------QQF--REIETCVECSATTMI  162 (507)
Q Consensus        94 ~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~SA~~g~  162 (507)
                      +..++..... |.......  ..+.|+++++||.|+......   .+....+.       ...  ....++++|||++|+
T Consensus        79 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          79 DPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNAVSE---AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             CGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSCCCH---HHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             chhhhhhhhH-HHHhhhhhhccCCceEEEEeccccccccCCH---HHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999888776 44444332  247999999999999764322   11111110       000  111268999999999


Q ss_pred             CchHHHHHHHH
Q 010548          163 QVPDVFYYAQK  173 (507)
Q Consensus       163 gi~~l~~~i~~  173 (507)
                      ||+|+|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999854

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3.7e-20  Score=162.85  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccch---------hhhHHhh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENK---------GKLNEEL   80 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~   80 (507)
                      +||+++|++|||||||+|+|++.+....  +..++.+   ....+...+..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIV--TDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCC--CCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee--eccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999999999998763221  1112222   333445667899999999964211         1223457


Q ss_pred             ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        81 ~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      +.+|++++|+|++++.......  +...+    ...|+++++||+|+.+....       ..+...++...+++++||++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~--~~~~~----~~~~~i~~~~k~d~~~~~~~-------~~~~~~~~~~~~~~~vSA~~  145 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEKINE-------EEIKNKLGTDRHMVKISALK  145 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCCCCH-------HHHHHHHTCSTTEEEEEGGG
T ss_pred             HhCCEEEEEEeCCCCcchhhhh--hhhhc----ccccceeeeeeccccchhhh-------HHHHHHhCCCCcEEEEECCC
Confidence            8999999999999987765543  22222    26789999999999765322       23344444445799999999


Q ss_pred             CCCchHHHHHHHH
Q 010548          161 MIQVPDVFYYAQK  173 (507)
Q Consensus       161 g~gi~~l~~~i~~  173 (507)
                      |.||++|++.|.+
T Consensus       146 g~gi~~L~~~I~k  158 (160)
T d1xzpa2         146 GEGLEKLEESIYR  158 (160)
T ss_dssp             TCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999999876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.80  E-value=2.7e-19  Score=160.56  Aligned_cols=159  Identities=15%  Similarity=0.262  Sum_probs=110.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLT   89 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V   89 (507)
                      .+..||++||++|||||||+++|++..+....++......   .+...+..+..||+.+...+.......++..+++++|
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE---ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE---EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee---EEEecccccccccccchhhhhhHHhhhhcccceeeee
Confidence            5678999999999999999999999887555443322222   2233467889999999998888888999999999999


Q ss_pred             EeCCChhhHHHHHHhHHHHHHh-cCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHh---------------cccCcE
Q 010548           90 YACNQQSTLSRLSSYWLPELRR-LEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQF---------------REIETC  153 (507)
Q Consensus        90 ~D~~~~~s~~~~~~~~~~~l~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  153 (507)
                      +|+++...+......+...... ...++|+++++||.|+......    ..+.......               ....++
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE----ERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH----HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCH----HHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999998888877645444432 2357999999999998764322    1111111110               001258


Q ss_pred             EEeCcccCCCchHHHHHHHHHH
Q 010548          154 VECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       154 ~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ++|||++|+||+|+|++|.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.3e-19  Score=164.41  Aligned_cols=159  Identities=16%  Similarity=0.150  Sum_probs=114.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +.+||+++|+.|||||||++||....++...       .....+......+.+|||+|++.+...+..+++.++++++|+
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~-------~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~   73 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG-------IVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV   73 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS-------EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcc-------EEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEE
Confidence            4689999999999999999999877654321       112344566889999999999999999999999999999999


Q ss_pred             eCCChhhHH----------HHHHhHHHHHHhc-CCCCcEEEEEecccCCCCC--------------CccchhhhhHHHHH
Q 010548           91 ACNQQSTLS----------RLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDH--------------NATSLEEVMGPIMQ  145 (507)
Q Consensus        91 D~~~~~s~~----------~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~  145 (507)
                      |.++..++.          .....|...+... ..+.|+++++||+|+...+              ......+....+..
T Consensus        74 d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (195)
T d1svsa1          74 ALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC  153 (195)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHH
T ss_pred             eecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHH
Confidence            999887652          2222355555433 3478999999999963210              00011222233333


Q ss_pred             Hhccc--------CcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          146 QFREI--------ETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       146 ~~~~~--------~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      .+...        ..+++|||++|.||+++|+.+.+.++
T Consensus       154 ~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         154 QFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            33221        14678999999999999999887664

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1e-18  Score=157.00  Aligned_cols=151  Identities=19%  Similarity=0.152  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeC-CcccCCceEEEEEeCCCCccc---------------hhhhH
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLP-PDFYPDRVPVTIIDTSSSLEN---------------KGKLN   77 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~i~Dt~G~~~~---------------~~~~~   77 (507)
                      .|+|+|.||||||||+|+|++.+..   .+..+++|.. ..+..  ..+.++||||....               .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~---~~~~~g~T~~~~~~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR---RGKRPGVTRKIIEIEW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS---SSSSTTCTTSCEEEEE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce---eeCCCCEeeccccccc--ccceecccCCceeccccccccccccchhhhhhhh
Confidence            6999999999999999999987642   2223334422 12222  24678999996311               11223


Q ss_pred             HhhccCCEEEEEEeCCChhhHHHH---------HHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc
Q 010548           78 EELKRADAVVLTYACNQQSTLSRL---------SSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (507)
Q Consensus        78 ~~~~~ad~il~V~D~~~~~s~~~~---------~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (507)
                      ..++.+|++++|+|++........         ...+.+.++..  ++|+|+|+||+|+.....     .....+...+.
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-----~~~~~~~~~~~  149 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-----EVINFLAEKFE  149 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-----HHHHHHHHHHT
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-----HHHHHHHHHhc
Confidence            456889999999998754322211         11245556555  799999999999865322     22222333322


Q ss_pred             cc-----CcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          149 EI-----ETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       149 ~~-----~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ..     ..++++||++|.||++|++.|.+.+.
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            11     14899999999999999999988763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=4.9e-19  Score=165.02  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCCCCCe--------------eeCCcccCCceEEEEEeCCCCccchhh
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKV----PPVHAPT--------------RLPPDFYPDRVPVTIIDTSSSLENKGK   75 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~----~~~~~~~--------------t~~~~~~~~~~~~~i~Dt~G~~~~~~~   75 (507)
                      .|+|+|++|+|||||+|+|++.......    .......              .....+...+..+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            3999999999999999999875421111    0000000              011233456778999999999998888


Q ss_pred             hHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhh-----------------
Q 010548           76 LNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEE-----------------  138 (507)
Q Consensus        76 ~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~-----------------  138 (507)
                      ...++..+|++|+|+|+.++-.....  ..+..+...  ++|+|+|+||+|+...........                 
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccchh--HHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            88889999999999999987555543  366777776  799999999999976543200000                 


Q ss_pred             -hh----HHHHHH------------hcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          139 -VM----GPIMQQ------------FREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       139 -~~----~~~~~~------------~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                       ..    ..+...            +....+++++||++|.|+++|++.|....
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence             00    000000            11123689999999999999999887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=2.4e-19  Score=161.59  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccc----hhh---hHHhhccCCE
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN----KGK---LNEELKRADA   85 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~----~~~---~~~~~~~ad~   85 (507)
                      +|+|+|++|||||||+|+|++.+.... .++.....+........+..+.+|||||..+.    ...   ....+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            699999999999999999998763211 22211111111122234567999999996321    111   2245678999


Q ss_pred             EEEEEeCCChhhHHHHHH--hHHHHHHhc---CCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCccc
Q 010548           86 VVLTYACNQQSTLSRLSS--YWLPELRRL---EIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATT  160 (507)
Q Consensus        86 il~V~D~~~~~s~~~~~~--~~~~~l~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  160 (507)
                      ++++++............  .+.......   ..++|+++|+||+|+...      .+....+.+.+....+++.+||++
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH------HHHHHHHHHHhccCCcEEEEECCC
Confidence            999998765432222111  111111111   236899999999999752      233455556665545789999999


Q ss_pred             CCCchHHHHHHHHHHcC
Q 010548          161 MIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       161 g~gi~~l~~~i~~~i~~  177 (507)
                      |.||++|++.|.+.+..
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999998743

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.5e-18  Score=156.35  Aligned_cols=161  Identities=15%  Similarity=0.139  Sum_probs=115.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +.+||+++|+.|||||||++||....+. ..|+.....   ..+....+.+.+||++|++.+...+..+++.++++++||
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   76 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIE---YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV   76 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEE---EEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEE---EEEeccceeeeeccccccccccccccccccccceeeEee
Confidence            4689999999999999999999988863 233321111   133456789999999999999999999999999999999


Q ss_pred             eCCChh-----------hHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCCc---------------cchhhhhHHH
Q 010548           91 ACNQQS-----------TLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHNA---------------TSLEEVMGPI  143 (507)
Q Consensus        91 D~~~~~-----------s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~~---------------~~~~~~~~~~  143 (507)
                      |.++..           .++... .|...+... ..+.|+++++||+|+......               .........+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          77 ALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EGGGGGCBCSSCTTSBHHHHHHH-HHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eccchhhhhhhhccccchHHHHH-HHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            998764           234444 487777654 358999999999997532111               0111111222


Q ss_pred             HHHhcc-------cCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          144 MQQFRE-------IETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       144 ~~~~~~-------~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ...+..       ...+++|||++|.||.++|+.|.+.++
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            222211       113689999999999999999987764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=2.7e-18  Score=156.04  Aligned_cols=155  Identities=15%  Similarity=0.110  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchh-------------hhHHh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKG-------------KLNEE   79 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~-------------~~~~~   79 (507)
                      .+|+|+|++|||||||+|+|++.+... .....+.+|...........+.+.|++|......             .....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLA-RTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT  102 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceE-EeecccceeeecccccccccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence            489999999999999999999865321 1122222232211112234466778877532111             11134


Q ss_pred             hccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc--ccCcEEEeC
Q 010548           80 LKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR--EIETCVECS  157 (507)
Q Consensus        80 ~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~S  157 (507)
                      +..+|++++|+|++.+......  .+++.++..  ++|+++|+||+|+......   .+....+.+.+.  ...+++++|
T Consensus       103 ~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~~--~~piivv~NK~D~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         103 REELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGKW---DKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH---HHHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccchhhhhhhhhcccccccccc--ccccccccc--cCcceechhhccccCHHHH---HHHHHHHHHHhcccCCCCEEEEe
Confidence            5677999999999877554433  377778777  7999999999998654332   233333333332  223689999


Q ss_pred             cccCCCchHHHHHHHHHH
Q 010548          158 ATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       158 A~~g~gi~~l~~~i~~~i  175 (507)
                      |++|.|++++++.|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1.2e-18  Score=165.16  Aligned_cols=228  Identities=11%  Similarity=0.079  Sum_probs=154.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-C--------------CCCeeeC---CcccCCceEEEEEeCCCCccchh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPP-V--------------HAPTRLP---PDFYPDRVPVTIIDTSSSLENKG   74 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~--------------~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~   74 (507)
                      .+|+|+|+.++|||||+.+|+...-...... .              ..+.++.   ..+.+++.+++++||||+.+|..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            4699999999999999999974321111110 0              0011111   23347889999999999999999


Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEE
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV  154 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (507)
                      .....++.+|++|+|+|+.++-......  .++..++.  ++|.|+++||+|....    .....+..+...++..+-.+
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~T~~--~w~~a~~~--~lP~i~fINKmDr~~a----d~~~~l~ei~~~l~~~~vp~  158 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQSET--VWRQAEKY--KVPRIAFANKMDKTGA----DLWLVIRTMQERLGARPVVM  158 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHHHHH--HHHHHHTT--TCCEEEEEECTTSTTC----CHHHHHHHHHHTTCCCEEEC
T ss_pred             HHHHHHHhhhheEEeccccCCcchhHHH--HHHHHHHc--CCCEEEEEeccccccc----ccchhHHHHHHHhCCCeEEE
Confidence            9999999999999999999986665544  55666766  8999999999998765    45677788888887643233


Q ss_pred             EeCcccCCCchHHHHHHHHHHcCCCCCC-C-------ccchhcccHHHHHHHHHHHhhccCC------CCCccChhhhHH
Q 010548          155 ECSATTMIQVPDVFYYAQKAVLHPTAPL-F-------DHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNE  220 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i~~~~~~~-~-------~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~  220 (507)
                      .+..-.+.++..+.+.+...+....... .       .........+++..|.+.....|++      +++.++.+|+..
T Consensus       159 ~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~l~e~vae~Dd~L~e~yle~~e~~~eel~~  238 (276)
T d2bv3a2         159 QLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVA  238 (276)
T ss_dssp             EEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHH
T ss_pred             EecccCCCceeEEeeccceEEEEecCCCCccceeccCchHHHHHHHHHHHHHhhhhhcccHHHHHHHhcCCCCCHHHHHH
Confidence            3333444444444433333322111100 0       0111122344445555555555544      467799999988


Q ss_pred             HHhH----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548          221 FQVK----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (507)
Q Consensus       221 ~~~~----------~~~~~l~~~~~~~l~~~i~~~~~~  248 (507)
                      ..++          +|++++.+.|+..|++.+.+.+|+
T Consensus       239 ~l~~a~~~g~i~PV~~GSA~~n~GV~~LLD~i~~~~PS  276 (276)
T d2bv3a2         239 AIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS  276 (276)
T ss_dssp             HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhcCcEEEEEEeECCCCcCHHHHHHHHHHhCCC
Confidence            8876          899999999999999999999986

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.6e-17  Score=152.37  Aligned_cols=119  Identities=17%  Similarity=0.146  Sum_probs=87.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccch-hhhHHhhccCCEEEEEEeC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENK-GKLNEELKRADAVVLTYAC   92 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~ad~il~V~D~   92 (507)
                      +|+|+|++|||||||+|+|+++.+....++..............++.+.+||++|++.+. ..+..+++.++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            699999999999999999999887666654433322211223457889999999988775 4566788999999999999


Q ss_pred             CChhhH-HHHHHhHHHHHHh---cCCCCcEEEEEecccCCCCCC
Q 010548           93 NQQSTL-SRLSSYWLPELRR---LEIKVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus        93 ~~~~s~-~~~~~~~~~~l~~---~~~~~piilv~NK~Dl~~~~~  132 (507)
                      ++..++ ....+.+...+..   ...++|++||+||+|+.....
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            997653 4444334444432   234689999999999987543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.74  E-value=4.2e-18  Score=154.82  Aligned_cols=164  Identities=15%  Similarity=0.105  Sum_probs=105.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeee--------------------------CCcccCCceEEEE
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRL--------------------------PPDFYPDRVPVTI   63 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~--------------------------~~~~~~~~~~~~i   63 (507)
                      .+.++|+++|+.++|||||+++|++............+.|.                          ..........+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            45689999999999999999999874321111000000000                          0011122456999


Q ss_pred             EeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHH
Q 010548           64 IDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPI  143 (507)
Q Consensus        64 ~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  143 (507)
                      +||||+..|.......+..+|++++|+|+.++.......+ .+..++..+ ..++|++.||+|+.+........+....+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~~-~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQIIG-QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHhc-CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999888888888999999999999998743333332 334444442 24588899999997642220111122222


Q ss_pred             HHHhc-ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          144 MQQFR-EIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       144 ~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ...+. ...+++++||++|.|+++|++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            22221 123789999999999999999987754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=1.3e-17  Score=152.68  Aligned_cols=167  Identities=15%  Similarity=0.096  Sum_probs=106.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCCCCC-----------------CeeeC---C-----cccCC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------VPPVHA-----------------PTRLP---P-----DFYPD   57 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~------~~~~~~-----------------~~t~~---~-----~~~~~   57 (507)
                      .++.++|+|+|+.++|||||+++|++......      ......                 .....   .     .....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            45679999999999999999999986331100      000000                 00000   0     00011


Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~  137 (507)
                      ...+.++||||+..|.......+..+|++|+|+|+.++-.-....+ .+..+...+ -.|+|++.||+|+..........
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e-~~~~~~~~~-i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGIIG-VKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHH-HHHHHHHTT-CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHH-HHHHHHHcC-CceeeeccccCCCccchHHHHHH
Confidence            3478999999999998888888999999999999988632222222 344444442 35899999999997643220111


Q ss_pred             hhhHHHHHHhc-ccCcEEEeCcccCCCchHHHHHHHHHHcC
Q 010548          138 EVMGPIMQQFR-EIETCVECSATTMIQVPDVFYYAQKAVLH  177 (507)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~i~~  177 (507)
                      .....+..... ...+++++||++|.||++|++.|...+..
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            11222222221 12378999999999999999998887543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.72  E-value=6.6e-18  Score=159.63  Aligned_cols=226  Identities=14%  Similarity=0.131  Sum_probs=149.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-CC--------------CCeeeC---CcccCCceEEEEEeCCCCccchh
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEKVPP-VH--------------APTRLP---PDFYPDRVPVTIIDTSSSLENKG   74 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~-~~--------------~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~   74 (507)
                      .+|+|+|+.++|||||+.+|+...-...... ..              .+.++.   ..+.+++.+++++||||+.+|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            3699999999999999999974332111111 00              011111   22447789999999999999999


Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEE
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCV  154 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (507)
                      .....++.+|++|+|+|+.++-......  .++.+++.  ++|.++++||+|...     ........+...++.. -.+
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~--~~~~~~~~--~~p~~i~iNk~D~~~-----~~~~~l~~~~~~lg~~-vp~  152 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTER--AWTVAERL--GLPRMVVVTKLDKGG-----DYYALLEDLRSTLGPI-LPI  152 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEECGGGCC-----CHHHHHHHHHHHHCSE-EEC
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHH--HHHhhhhc--ccccccccccccccc-----cchhhhhhHHHHhccC-cCe
Confidence            9999999999999999999886666654  55666666  799999999999643     2345566677777642 233


Q ss_pred             EeCcccCCCchHHHHHHHHHHcCCCCC-----CCccchhcccHHHHHHHHHHHhhccCC------CCCccChhhhHHHHh
Q 010548          155 ECSATTMIQVPDVFYYAQKAVLHPTAP-----LFDHDEQTLKPRCVRALKRIFIICDHD------MDGALNDAELNEFQV  223 (507)
Q Consensus       155 ~~SA~~g~gi~~l~~~i~~~i~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~d~~------~d~~l~~~el~~~~~  223 (507)
                      .+....|.++..+.+.+...+......     ...........+.+..+-+.....|.+      +++.++.++++...+
T Consensus       153 ~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~~~~~r~~L~E~vae~Dd~Lle~yle~~~l~~eel~~~l~  232 (267)
T d2dy1a2         153 DLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFH  232 (267)
T ss_dssp             EEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             EeeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcccHHHHHHHHH
Confidence            444445555444444333322111100     001111122233444444444444332      467899999998887


Q ss_pred             H----------hcCCCCCHHHHHHHHHHHHhhccC
Q 010548          224 K----------CFNAPLQPAEIVGVKRVVQEKQHD  248 (507)
Q Consensus       224 ~----------~~~~~l~~~~~~~l~~~i~~~~~~  248 (507)
                      +          +|++++...|+..+++.+.+.+|+
T Consensus       233 ~ai~~g~i~PV~~GSA~~n~GV~~LLd~i~~~~Ps  267 (267)
T d2dy1a2         233 EAVRRGLLYPVALASGEREIGVLPLLELILEALPS  267 (267)
T ss_dssp             HHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhCCC
Confidence            6          899999999999999999999986

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.7e-17  Score=150.95  Aligned_cols=161  Identities=17%  Similarity=0.215  Sum_probs=103.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      +.+||+++|++|||||||++||.   +.....++.. .. ...+..+...+.+||++|++.+...+..+++.++++++|+
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG-~~-~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~   75 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG-IH-EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLV   75 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSS-EE-EEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeee-eE-EEEEeeeeeeeeeecccceeeecccccccccccceeEEEE
Confidence            35899999999999999999994   3333333222 11 1235567889999999999999999999999999999999


Q ss_pred             eCCChhh----------HHHHHHhHHHHHHhc-CCCCcEEEEEecccCCCCCC---------------ccchhhhhHHHH
Q 010548           91 ACNQQST----------LSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRGDHN---------------ATSLEEVMGPIM  144 (507)
Q Consensus        91 D~~~~~s----------~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~~~~---------------~~~~~~~~~~~~  144 (507)
                      |.++..+          +......|...+... ..++|+++++||+|+.....               ..........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  155 (200)
T d1zcba2          76 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV  155 (200)
T ss_dssp             ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred             EcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHH
Confidence            9988543          333333233333322 34899999999999753210               001122223333


Q ss_pred             HHhcc--------cCcEEEeCcccCCCchHHHHHHHHHHc
Q 010548          145 QQFRE--------IETCVECSATTMIQVPDVFYYAQKAVL  176 (507)
Q Consensus       145 ~~~~~--------~~~~~~~SA~~g~gi~~l~~~i~~~i~  176 (507)
                      ..+..        ...++++||+++.||+++|+.+.+.+.
T Consensus       156 ~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         156 ECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            33321        113567999999999999998877653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.68  E-value=2.9e-17  Score=148.68  Aligned_cols=162  Identities=15%  Similarity=0.099  Sum_probs=110.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCC-------CCCC------CCCCCCCeeeC---CcccCCceEEEEEeCCCCccchh
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATES-------VPEK------VPPVHAPTRLP---PDFYPDRVPVTIIDTSSSLENKG   74 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~-------~~~~------~~~~~~~~t~~---~~~~~~~~~~~i~Dt~G~~~~~~   74 (507)
                      +.++|+++|+.++|||||+++|++..       +...      ......+.|+.   ..+.+.+..+.++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            56899999999999999999997420       0000      00011223322   24456788999999999999888


Q ss_pred             hhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc-cchhhhhHHHHHHhcc---c
Q 010548           75 KLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE---I  150 (507)
Q Consensus        75 ~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~---~  150 (507)
                      .....+..+|++|+|+|+.++...+..+  .+..+...+ .+|+|++.||+|+..+... .....++..+...++.   .
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~~--~~~~a~~~~-~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQIG-VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHTT-CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHHH--HHHHHHHhc-CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            8888999999999999999885544432  555555542 4689999999998754221 0122233444444433   1


Q ss_pred             CcEEEeCcccC----------CCchHHHHHHHHHH
Q 010548          151 ETCVECSATTM----------IQVPDVFYYAQKAV  175 (507)
Q Consensus       151 ~~~~~~SA~~g----------~gi~~l~~~i~~~i  175 (507)
                      .+++++||++|          .|+.+|++.|.+.+
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            36899999998          58888888876654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.6e-16  Score=144.98  Aligned_cols=147  Identities=16%  Similarity=0.174  Sum_probs=98.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---------CC-----CCeee---CCcccCCceEEEEEeCCCCccch
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPP---------VH-----APTRL---PPDFYPDRVPVTIIDTSSSLENK   73 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~---------~~-----~~~t~---~~~~~~~~~~~~i~Dt~G~~~~~   73 (507)
                      +.++|+++|++++|||||+++|+...-......         ..     .++|+   ...+.+++.++.++||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            568999999999999999999973210000000         00     02221   22445778899999999999999


Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCCc-cchhhhhHHHHHHhcc--
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHNA-TSLEEVMGPIMQQFRE--  149 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~--  149 (507)
                      ......+..||++|+|+|+.++...+..+  .+..+...  ++| +|+++||+|+.+..+. ......+..+...++.  
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~--~~~~~~~~--gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHH--HHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            98889999999999999999987766544  56666666  665 7788999998653221 0111222333333221  


Q ss_pred             -cCcEEEeCcccC
Q 010548          150 -IETCVECSATTM  161 (507)
Q Consensus       150 -~~~~~~~SA~~g  161 (507)
                       ..+++++||..+
T Consensus       158 ~~i~~i~~sa~~~  170 (204)
T d2c78a3         158 DEVPVIRGSALLA  170 (204)
T ss_dssp             TTSCEEECCHHHH
T ss_pred             ccceeeeeechhh
Confidence             136788888654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.8e-16  Score=141.37  Aligned_cols=154  Identities=18%  Similarity=0.166  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCCCCeeeCCcccCCceEEEEEeCCCCccchhh---------hHHhhccC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGK---------LNEELKRA   83 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~~~~~~~a   83 (507)
                      .|+|+|.+|||||||+|+|++.+.... .........+..........+..+|++|.......         .......+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            589999999999999999998764211 11111111122222244566778899886532211         11233567


Q ss_pred             CEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCC
Q 010548           84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQ  163 (507)
Q Consensus        84 d~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  163 (507)
                      ++++++.|..+.....  .. +...+.+.  ..|+++|+||+|.......  .......+..+++. .+++++||++|.|
T Consensus        87 ~~~l~~~d~~~~~~~~--~~-~~~~l~~~--~~~~i~v~~k~d~~~~~~~--~~~~~~~~~~~~~~-~~~~~vSA~~g~g  158 (179)
T d1egaa1          87 ELVIFVVEGTRWTPDD--EM-VLNKLREG--KAPVILAVNKVDNVQEKAD--LLPHLQFLASQMNF-LDIVPISAETGLN  158 (179)
T ss_dssp             EEEEEEEETTCCCHHH--HH-HHHHHHSS--SSCEEEEEESTTTCCCHHH--HHHHHHHHHTTSCC-SEEEECCTTTTTT
T ss_pred             ceeEEEEecCccchhH--HH-HHHHhhhc--cCceeeeeeeeeccchhhh--hhhHhhhhhhhcCC-CCEEEEeCcCCCC
Confidence            8888999977643222  22 44444444  6889999999998765332  33444555566654 3799999999999


Q ss_pred             chHHHHHHHHHH
Q 010548          164 VPDVFYYAQKAV  175 (507)
Q Consensus       164 i~~l~~~i~~~i  175 (507)
                      +++|++.|.+.+
T Consensus       159 i~~L~~~i~~~l  170 (179)
T d1egaa1         159 VDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998876

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=4.5e-16  Score=139.44  Aligned_cols=168  Identities=13%  Similarity=0.044  Sum_probs=92.0

Q ss_pred             CCCCCCCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee--eCCcccCCceEEEEEeCCCCcc-chh----
Q 010548            2 PGGSGSSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR--LPPDFYPDRVPVTIIDTSSSLE-NKG----   74 (507)
Q Consensus         2 ~~m~~~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~i~Dt~G~~~-~~~----   74 (507)
                      |.|.+.+....++|+|+|.+|||||||+|+|++.+....... .+.++  ........+......++++... ...    
T Consensus         6 ~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (188)
T d1puia_           6 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRK   84 (188)
T ss_dssp             SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CCHHH
T ss_pred             CChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecc-cccceeeccceecccccceeeeecccccchhhhhhhh
Confidence            344445556689999999999999999999998764322111 11111  1111112233333333333211 110    


Q ss_pred             ---hhH---HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhc
Q 010548           75 ---KLN---EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFR  148 (507)
Q Consensus        75 ---~~~---~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (507)
                         ...   .....++.++.+.+...........  +...+...  ..++++++||+|+..........+.+......+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~  160 (188)
T d1puia_          85 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFN  160 (188)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred             hhhhhhhhhhhhhheeEEEEeecccccchhHHHH--HHHHhhhc--cccccchhhhhhccCHHHHHHHHHHHHHHHHhhC
Confidence               111   1223445566666766654444432  56666655  7899999999998764332111222233333333


Q ss_pred             ccCcEEEeCcccCCCchHHHHHHHHH
Q 010548          149 EIETCVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       149 ~~~~~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      ...+++++||++|.||++|++.|.+.
T Consensus       161 ~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         161 GDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             SCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            33478999999999999999988654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=9.8e-16  Score=135.51  Aligned_cols=85  Identities=20%  Similarity=0.357  Sum_probs=77.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++++...+.++.+.+.....+...+...++.+|||+|++++..++  ..++++||+
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~--~~~~~~ad~   80 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTIT--TAYYRGAMG   80 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTTTTCCE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHH--HHHHhcCCE
Confidence            457999999999999999999999999999999999888888888888778899999999999999888  679999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +|+|||+
T Consensus        81 ~ilv~d~   87 (169)
T d3raba_          81 FILMYDI   87 (169)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=6.6e-16  Score=136.16  Aligned_cols=84  Identities=29%  Similarity=0.449  Sum_probs=71.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++...+.+|.+.++....+..++....+.+|||+|++++..++  ..++++++++
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~   78 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT--TAYYRGAMGI   78 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC--HHHHTTEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHHHhcCCEE
Confidence            36899999999999999999999999999999999988988889999888899999999999999887  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||.
T Consensus        79 i~v~d~   84 (166)
T d1g16a_          79 ILVYDI   84 (166)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=134.63  Aligned_cols=85  Identities=24%  Similarity=0.404  Sum_probs=78.4

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++++...+.++.+.++..+.+..++...++.+|||+|+++|..++  ..++++|++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~--~~~~~~~~~   80 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT--QSYYRSANA   80 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--GGGSTTCSE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHHHhccce
Confidence            357999999999999999999999999999998999888888888888888899999999999999888  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        81 ~i~v~d~   87 (171)
T d2ew1a1          81 LILTYDI   87 (171)
T ss_dssp             EEEEEET
T ss_pred             EEEeeec
Confidence            9999995

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=133.65  Aligned_cols=85  Identities=22%  Similarity=0.453  Sum_probs=78.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|++|||||||++||+++++...+.++.+.++.......++...++.+|||+|++++..++  ..+++++|+
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~d~   79 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT--RSYYRGAAG   79 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHH--HHHHHTCSE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHH--HHHhcCCcE
Confidence            357999999999999999999999999999999988888888888888888899999999999999887  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        80 ~ilv~d~   86 (166)
T d1z0fa1          80 ALMVYDI   86 (166)
T ss_dssp             EEEEEET
T ss_pred             EEEEecc
Confidence            9999995

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.59  E-value=8e-15  Score=134.95  Aligned_cols=155  Identities=17%  Similarity=0.108  Sum_probs=102.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCC------C--CCCCC----------------------Ceee---CCc
Q 010548            7 SSSRTGVRVVVVGDRGTGKSSLIAAAATESVPEK------V--PPVHA----------------------PTRL---PPD   53 (507)
Q Consensus         7 ~~~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~------~--~~~~~----------------------~~t~---~~~   53 (507)
                      ......++|+++|+.++|||||+++|+...-...      .  .....                      +.++   ...
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            3445678999999999999999999974221000      0  00000                      0000   011


Q ss_pred             ccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCCC
Q 010548           54 FYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDHN  132 (507)
Q Consensus        54 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~  132 (507)
                      +...+..+.++||||+..|.......+..+|++|+|+|+..+...+...  .+..+...  ++| +|++.||+|+.+..+
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~~--gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLL--GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHT--TCCEEEEEEECTTTTTSCH
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHHHc--CCCEEEEEEEccccccccc
Confidence            2245678999999999999998999999999999999999875555433  44445555  544 889999999987533


Q ss_pred             ccchhh---hhHHHHHHhccc---CcEEEeCcccCCCchH
Q 010548          133 ATSLEE---VMGPIMQQFREI---ETCVECSATTMIQVPD  166 (507)
Q Consensus       133 ~~~~~~---~~~~~~~~~~~~---~~~~~~SA~~g~gi~~  166 (507)
                      . ...+   ++..+..+.+..   .+++++||++|.||.+
T Consensus       160 ~-~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         160 R-VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             H-HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             e-ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            2 2222   233444444321   2679999999999854

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=3.9e-16  Score=144.42  Aligned_cols=113  Identities=16%  Similarity=0.209  Sum_probs=84.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEE
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTY   90 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~   90 (507)
                      ..+||+++|+.|||||||++++....+.   |+ .+-..  ..+..+++.+.+||++|++.++..+..+++.++++++|+
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~---pT-iG~~~--~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~   78 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVV---LT-SGIFE--TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV   78 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCC---CC-CSCEE--EEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcC---CC-CCeEE--EEEEECcEEEEEEecCccceeccchhhhcccccceEEEE
Confidence            4689999999999999999999866542   22 11111  124456899999999999999999999999999999999


Q ss_pred             eCCChh----------hHHHHHHhHHHHHHhc-CCCCcEEEEEecccCCC
Q 010548           91 ACNQQS----------TLSRLSSYWLPELRRL-EIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        91 D~~~~~----------s~~~~~~~~~~~l~~~-~~~~piilv~NK~Dl~~  129 (507)
                      |.++..          ...+....|...+... ..++|++|++||+|+..
T Consensus        79 d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          79 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             ETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             EccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            998642          2233333355545442 34799999999999854

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.8e-15  Score=132.24  Aligned_cols=84  Identities=20%  Similarity=0.323  Sum_probs=72.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++||+++++...+.+|.+..+..+.+..++....+.+||++|++++..++  ..+++++|++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~   79 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG--PIYYRDSNGA   79 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------CCSSTTCSEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccc--hhhccCCcee
Confidence            56899999999999999999999999999999999999988888998888999999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 i~v~d~   85 (167)
T d1z08a1          80 ILVYDI   85 (167)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            999995

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.9e-15  Score=135.53  Aligned_cols=85  Identities=27%  Similarity=0.452  Sum_probs=78.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+|+|++|||||||+++|+++.+...+.++.++.+....+..+++...+.+|||+|++++..++  ..++++||+
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~--~~~~~~a~~   81 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT--SSYYRGSHG   81 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC--GGGGTTCSE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHH--HHHhccCCE
Confidence            467999999999999999999999999999999999988888888888888899999999999999888  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        82 ~i~v~d~   88 (194)
T d2bcgy1          82 IIIVYDV   88 (194)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            9999995

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=7.7e-15  Score=129.71  Aligned_cols=83  Identities=23%  Similarity=0.350  Sum_probs=77.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++++...+.++.+..+..+.+...+...++.+|||+|++++..++  ..+++++|+++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~--~~~~~~~~~~i   80 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA--PMYYRNAQAAL   80 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHH--HHHHhccceEE
Confidence            5899999999999999999999999999999999988888888888888899999999999998887  67999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        81 lv~d~   85 (170)
T d1ek0a_          81 VVYDV   85 (170)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            99995

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.4e-15  Score=131.80  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ...+||+++|++|||||||++||+++.+...+.+|.+. ...+.+...+...++.+|||+|++++..++  ..++++||+
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~--~~~~~~a~~   83 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLR--PLSYPMTDV   83 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTG--GGGCTTCSE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhh--hhcccccce
Confidence            45799999999999999999999999999988888874 446677788788899999999999999887  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        84 ~ilv~d~   90 (185)
T d2atxa1          84 FLICFSV   90 (185)
T ss_dssp             EEEEEET
T ss_pred             eeecccc
Confidence            9999996

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.5e-15  Score=133.01  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=72.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++++...+.+|.+.++..+.+..++...++.+|||+|++++..++  ..++++||+++
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~i   80 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR--DGYYIQAQCAI   80 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCG--GGGTTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceec--chhcccccchh
Confidence            3899999999999999999999999999999999988888888888888999999999999999888  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        81 lv~d~   85 (170)
T d1i2ma_          81 IMFDV   85 (170)
T ss_dssp             EEEET
T ss_pred             hcccc
Confidence            99995

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.6e-15  Score=134.67  Aligned_cols=86  Identities=23%  Similarity=0.391  Sum_probs=54.7

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      .++.+||+++|++|||||||+++|+++++...+.++.+.++..+.+..++....+.+|||+|++++..++  ..+++++|
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~--~~~~~~~~   80 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--TAYYRGAM   80 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C--CTTTTTCS
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHH--HHhccCCC
Confidence            4567999999999999999999999999988888888888888889988788899999999999999888  68999999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        81 ~~i~v~d~   88 (173)
T d2fu5c1          81 GIMLVYDI   88 (173)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999995

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=7.2e-15  Score=134.15  Aligned_cols=116  Identities=20%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCccchhhhHH----hhccCCEEE
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNE----ELKRADAVV   87 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~----~~~~ad~il   87 (507)
                      ..+|+|+|++|||||||+|+|+++++.......    .....+...+..+.+|||||+..+...+..    ....++.++
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt~~----~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i   78 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ----EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   78 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS----SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEec----ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccc
Confidence            358999999999999999999998754322111    112233455677899999998876655443    456678999


Q ss_pred             EEEeCCC-hhhHHHHHHhHHH----HHHh-cCCCCcEEEEEecccCCCCCC
Q 010548           88 LTYACNQ-QSTLSRLSSYWLP----ELRR-LEIKVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus        88 ~V~D~~~-~~s~~~~~~~~~~----~l~~-~~~~~piilv~NK~Dl~~~~~  132 (507)
                      +++|+.+ ..+++.... |+.    .++. ...++|+++|+||+|+.+...
T Consensus        79 ~~vd~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             EEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             eEEEEecccccHHHHHH-HHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            9999775 455555544 332    2222 234799999999999977543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.54  E-value=1.2e-14  Score=138.70  Aligned_cols=88  Identities=14%  Similarity=0.031  Sum_probs=61.3

Q ss_pred             hhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcc-cCc
Q 010548           74 GKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFRE-IET  152 (507)
Q Consensus        74 ~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~  152 (507)
                      ..+...++.+|+||+|+|+.++.+..+-.  +.+.+    .++|+|+|+||+|+.+.       +....+.+.|.. ...
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~--l~~~~----~~Kp~IlVlNK~DLv~~-------~~~~~w~~~f~~~~~~   73 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNPM--IEDIL----KNKPRIMLLNKADKADA-------AVTQQWKEHFENQGIR   73 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHH--HHHHC----SSSCEEEEEECGGGSCH-------HHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCHH--HHHHH----cCCCeEEEEECccCCch-------HHHHHHHHHHHhcCCc
Confidence            34567899999999999999987655421  22222    37899999999999763       222333333321 126


Q ss_pred             EEEeCcccCCCchHHHHHHHHH
Q 010548          153 CVECSATTMIQVPDVFYYAQKA  174 (507)
Q Consensus       153 ~~~~SA~~g~gi~~l~~~i~~~  174 (507)
                      ++.+||+++.|+.++...+.+.
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~~   95 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKEI   95 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHH
T ss_pred             cceeecccCCCccccchhhhhh
Confidence            8999999999999888766543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=129.14  Aligned_cols=85  Identities=24%  Similarity=0.454  Sum_probs=77.0

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||+++|++|||||||+++|+++++...+.++.+.......+..++....+.+|||+|++++..++  ..+++.+++
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~   80 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT--RSYYRGAAG   80 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH--HTTSTTCSE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhH--HHHhhhCCE
Confidence            467999999999999999999999999999999988888777777777778899999999999999988  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||.
T Consensus        81 ~i~v~d~   87 (174)
T d2bmea1          81 ALLVYDI   87 (174)
T ss_dssp             EEEEEET
T ss_pred             EEEEEec
Confidence            9999995

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.1e-14  Score=127.84  Aligned_cols=83  Identities=14%  Similarity=0.354  Sum_probs=76.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||++||+++++...+.+|.+.+.........+....+.+|||+|++++..+.  ..+++++++++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--~~~~~~~~~~i   79 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT--KAYYRGAQACV   79 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC--HHHHTTCCEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhh--hhhhccCceEE
Confidence            4899999999999999999999999999999999988877778888788899999999999998877  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 ~v~d~   84 (164)
T d1z2aa1          80 LVFST   84 (164)
T ss_dssp             EEEET
T ss_pred             EEEec
Confidence            99995

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=127.31  Aligned_cols=82  Identities=18%  Similarity=0.417  Sum_probs=76.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      |||+++|++|||||||++||+++++...+.++.+...........+...++.+||++|++++...+  ..+++.+|++++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--~~~~~~~~~~il   78 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI--PSYIRDSAAAVV   78 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGH--HHHHTTCSEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccch--HHHhhccceEEE
Confidence            699999999999999999999999999999998888888888888788899999999999999887  789999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        79 v~d~   82 (164)
T d1yzqa1          79 VYDI   82 (164)
T ss_dssp             EEET
T ss_pred             eecc
Confidence            9995

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.5e-14  Score=127.42  Aligned_cols=84  Identities=25%  Similarity=0.385  Sum_probs=76.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++||+++++...+.+|.+..+........+....+.+|||+|++++..++  ..++++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--~~~~~~~~~~   80 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA--PMYYRGSAAA   80 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT--HHHHTTCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHH--HHHHhhccce
Confidence            45899999999999999999999999999999999888877777777777788999999999999888  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        81 i~v~d~   86 (167)
T d1z0ja1          81 IIVYDI   86 (167)
T ss_dssp             EEEEET
T ss_pred             EEEeee
Confidence            999995

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-14  Score=128.19  Aligned_cols=85  Identities=21%  Similarity=0.367  Sum_probs=66.2

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCC-CCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhccccc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCD  499 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad  499 (507)
                      +..+||+++|++|||||||+++|+++++...+ .++.+.++....+...+...++.+|||+|++++..++  ..+++++|
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~--~~~~~~~d   81 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT--HAYYRDAH   81 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------CCGGGCS
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHH--HHhhcCCc
Confidence            45699999999999999999999999986554 4555667777677788778899999999999999887  67899999


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++|||+
T Consensus        82 ~~i~v~d~   89 (170)
T d2g6ba1          82 ALLLLYDV   89 (170)
T ss_dssp             EEEEEEET
T ss_pred             eeEEEecC
Confidence            99999995

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=130.43  Aligned_cols=82  Identities=21%  Similarity=0.376  Sum_probs=73.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||++||+++++...+.+|++..+ .......+....+.+|||+|+++|..++  ..+++++|+++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~i   79 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLR--PLSYPQTDVFL   79 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTG--GGGCTTCSEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhh--hhcccccceee
Confidence            58999999999999999999999999999988888544 4556667678899999999999999888  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 lv~d~   84 (191)
T d2ngra_          80 VCFSV   84 (191)
T ss_dssp             EEEET
T ss_pred             ccccc
Confidence            99995

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=128.71  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=72.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      .||+++|++|||||||+++|+++++...+.||.+..+ .......++..++.+||++|++.+..++  ..+++++|++++
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~--~~~~~~~~~~il   79 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLR--PLSYPDTDVILM   79 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTG--GGGCTTCSEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-cccccccccceeeeccccCccchhcccc--hhhcccchhhhh
Confidence            6999999999999999999999999999988887444 5556677788899999999999999888  789999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        80 v~d~   83 (177)
T d1kmqa_          80 CFSI   83 (177)
T ss_dssp             EEET
T ss_pred             hccc
Confidence            9995

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-14  Score=128.67  Aligned_cols=85  Identities=25%  Similarity=0.395  Sum_probs=74.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      ++.+||++||++|||||||+++|+++.+...+.++.+.+.....+..++....+.+||++|+++|...+  ..+++.+|+
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~--~~~~~~~~~   79 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT--SAYYRGAVG   79 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC--HHHHTTCSE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHH--HHHhhccCe
Confidence            356999999999999999999999999999998888888878888888778899999999999999887  788999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        80 ~i~v~d~   86 (175)
T d2f9la1          80 ALLVYDI   86 (175)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999995

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=128.82  Aligned_cols=84  Identities=25%  Similarity=0.425  Sum_probs=77.0

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      ..+||+++|++|||||||+++|+++++...+.++.+.....+.+...+...++.+|||+|++++..++  ..+++++|++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~i   83 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT--PSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH--HHHHTTCCEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHH--HHHHhcCCEE
Confidence            45899999999999999999999999999998888888888888888788899999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        84 i~v~d~   89 (177)
T d1x3sa1          84 ILVYDV   89 (177)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=126.92  Aligned_cols=83  Identities=18%  Similarity=0.323  Sum_probs=74.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++...+.||.+..+ .+.+.+++....+.+|||+|.+++..+.  ..+++.+|++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~--~~~~~~~d~~   79 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP--QTYSIDINGY   79 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCC--GGGTSSCCEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeeccccccccccccc--chhhhhhhhh
Confidence            458999999999999999999999999988889888766 4667788788899999999999998877  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 ilv~d~   85 (167)
T d1xtqa1          80 ILVYSV   85 (167)
T ss_dssp             EEEEET
T ss_pred             hhhccc
Confidence            999995

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-14  Score=128.02  Aligned_cols=83  Identities=20%  Similarity=0.380  Sum_probs=73.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|++++|...+.+|.+..+ ...+...++..++.+||++|++.+..++  ..+++++|++
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~   80 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLR--PLSYPQTDVS   80 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTG--GGGCTTCSEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeeccCcceEEEeecccccccchhhh--hhccccccee
Confidence            469999999999999999999999999999988887544 4556677788899999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        81 ilv~d~   86 (183)
T d1mh1a_          81 LICFSL   86 (183)
T ss_dssp             EEEEET
T ss_pred             eeeecc
Confidence            999996

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=127.61  Aligned_cols=82  Identities=23%  Similarity=0.387  Sum_probs=72.6

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .|||+++|++|||||||++||+++++...+.+|.+..+ ......++....+.+||++|++++....  ..+++.||+++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~a~~~i   78 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQ--RLSISKGHAFI   78 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHH--HHHHHHCSEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccc--cccccceeEEE
Confidence            58999999999999999999999999988888888655 4455667677889999999999998887  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        79 lv~d~   83 (171)
T d2erxa1          79 LVYSI   83 (171)
T ss_dssp             EEEET
T ss_pred             EEeec
Confidence            99995

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2e-14  Score=127.48  Aligned_cols=84  Identities=19%  Similarity=0.286  Sum_probs=74.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||++||+++++...+.++.+ +...+.+.+++....+.+||++|++++...+  ..+++++|+
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~~~~   80 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMR--EQYMRAGHG   80 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCH--HHHHHHCSE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeecccccccccccccc--chhhcccee
Confidence            3569999999999999999999999999988887765 4446678888788899999999999998887  789999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        81 ~i~v~d~   87 (173)
T d2fn4a1          81 FLLVFAI   87 (173)
T ss_dssp             EEEEEET
T ss_pred             eeeeccc
Confidence            9999995

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.9e-14  Score=127.49  Aligned_cols=84  Identities=24%  Similarity=0.409  Sum_probs=72.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||++||++|||||||++||+++++...+.++.+.+.........++...+.+||++|++.+..++  ..+++.+|++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--~~~~~~~d~~   79 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT--RSYYRGAAGA   79 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC--HHHHTTCSEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHH--HHHhhccCEE
Confidence            56899999999999999999999999999999988888888878788778899999999999999887  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 ilv~d~   85 (173)
T d2a5ja1          80 LLVYDI   85 (173)
T ss_dssp             EEEEET
T ss_pred             EEEEee
Confidence            999995

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.7e-14  Score=125.80  Aligned_cols=83  Identities=23%  Similarity=0.316  Sum_probs=74.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||++||++|||||||++||++++|...+.++.+..+ ...+..++....+.+||++|++.+..++  ..+++++|++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~   78 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMR--DLYMKNGQGF   78 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHH--HHHHHHCSEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccc--ccccccccee
Confidence            358999999999999999999999999999988888665 4556778788899999999999999887  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        79 ilv~d~   84 (167)
T d1c1ya_          79 ALVYSI   84 (167)
T ss_dssp             EEEEET
T ss_pred             EEeeec
Confidence            999995

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.2e-14  Score=125.63  Aligned_cols=83  Identities=20%  Similarity=0.356  Sum_probs=74.0

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++...+.++.+..+ .+.+..++....+.+||++|++++..++  ..++++||++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~--~~~~~~~~~~   79 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR--EQYMRTGDGF   79 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSH--HHHHHHCSEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccch--hhhhhhccEE
Confidence            459999999999999999999999999988888887655 5566777788899999999999999887  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 llv~d~   85 (169)
T d1x1ra1          80 LIVYSV   85 (169)
T ss_dssp             EEEEET
T ss_pred             EEeccc
Confidence            999995

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.7e-14  Score=124.55  Aligned_cols=83  Identities=24%  Similarity=0.322  Sum_probs=75.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||++||++|||||||+++|+++++...+.++.+..+........+....+.+||++|++++..++  ..+++++++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~i   83 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA--PMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH--HHHHTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhH--HHHhhCcceEE
Confidence            5899999999999999999999999999999999988877777777677889999999999999888  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        84 lv~d~   88 (170)
T d1r2qa_          84 VVYDI   88 (170)
T ss_dssp             EEEET
T ss_pred             EEecc
Confidence            99995

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.49  E-value=3.2e-14  Score=125.42  Aligned_cols=83  Identities=25%  Similarity=0.382  Sum_probs=71.0

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++...+.+|.+..+. +.+..++....+.+||++|++++..+.  ..+++++|++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~--~~~~~~~~~~   79 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIR--DNYFRSGEGF   79 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHH--HHHHHHCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhh--hhccccccee
Confidence            4689999999999999999999999999999999886664 456677788899999999999998887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        80 ilv~d~   85 (168)
T d1u8za_          80 LCVFSI   85 (168)
T ss_dssp             EEEEET
T ss_pred             EEEeec
Confidence            999995

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.8e-14  Score=124.76  Aligned_cols=83  Identities=22%  Similarity=0.308  Sum_probs=73.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++||+++++...+.++.+.. .......++...++.+||++|++.+....  ..++++||++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~~~~a~~~   78 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMR--DLYIKNGQGF   78 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHH--HHHHHHCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeee-eeeeeecCcceEeeccccCCCccccccch--HHHhhcccce
Confidence            45899999999999999999999999999888888754 45566777788899999999999988877  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        79 ilv~d~   84 (167)
T d1kaoa_          79 ILVYSL   84 (167)
T ss_dssp             EEEEET
T ss_pred             eeeeee
Confidence            999995

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-14  Score=126.04  Aligned_cols=81  Identities=22%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .|||+++|++|||||||+++|.+..+... .++++.. ..+.+.+++....+.+|||+|++++..++  ..++++||+++
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~--~~~~~~~d~~i   76 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLP--GHCMAMGDAYV   76 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEE-EEEEEEETTEEEEEEEEECC-------CH--HHHHTSCSEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeee-ecceeeccccccceeeeecccccccceec--ccchhhhhhhc
Confidence            48999999999999999999999876543 3444433 35567788788899999999999999887  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        77 lv~d~   81 (168)
T d2gjsa1          77 IVYSV   81 (168)
T ss_dssp             EEEET
T ss_pred             eeccc
Confidence            99995

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.5e-14  Score=124.46  Aligned_cols=81  Identities=25%  Similarity=0.325  Sum_probs=70.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||++||++|||||||++||++++|...+.||.+..+... +..++...++.+||++|++.+...   ..+++.|++++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~~~---~~~~~~~~~~i   77 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTIQR---EGHMRWGEGFV   77 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCHHH---HHHHHHCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccccc---hhhhcccccce
Confidence            38999999999999999999999999999999988777554 445667789999999999887533   46899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        78 lv~d~   82 (168)
T d2atva1          78 LVYDI   82 (168)
T ss_dssp             EEEET
T ss_pred             eeccc
Confidence            99995

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1e-13  Score=123.56  Aligned_cols=81  Identities=21%  Similarity=0.333  Sum_probs=72.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|++|||||||++||++++|...+.||.+..+ .+.+..++....+.+||++|++.+...+  ..+++++|++++
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~~il   79 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR--PLSYPDSDAVLI   79 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTG--GGGCTTCSEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeeccccccccccccccc--cchhhhhhhhhe
Confidence            7999999999999999999999999988888877544 4556777788899999999999998887  679999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      |||+
T Consensus        80 v~d~   83 (179)
T d1m7ba_          80 CFDI   83 (179)
T ss_dssp             EEET
T ss_pred             eeec
Confidence            9995

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.7e-13  Score=127.39  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=100.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC--C---------------CCCC-----------CCCCCeee---CCcccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESV--P---------------EKVP-----------PVHAPTRL---PPDFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~--~---------------~~~~-----------~~~~~~t~---~~~~~~~~   58 (507)
                      ++.++|+++|+.++|||||+.+|+...-  .               ....           ....+.|+   ...+.+.+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            3468999999999999999999963210  0               0000           00012221   12334678


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhH------HHHHHhHHHHHHhcCCCCc-EEEEEecccCCCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTL------SRLSSYWLPELRRLEIKVP-IIVAGCKLDLRGDH  131 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~------~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~  131 (507)
                      ++++++||||+..|...+...+..+|++|+|+|+..+.--      ....+ .+...+..  ++| +|+++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~e-h~~~~~~~--gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHH-HHHHHHHc--CCCeEEEEEECCCCCCCC
Confidence            9999999999999999999999999999999999875210      01222 23334444  555 88899999987653


Q ss_pred             Cccchh---hhhHHHHHHhcc---cCcEEEeCcccCCCchH
Q 010548          132 NATSLE---EVMGPIMQQFRE---IETCVECSATTMIQVPD  166 (507)
Q Consensus       132 ~~~~~~---~~~~~~~~~~~~---~~~~~~~SA~~g~gi~~  166 (507)
                      .. ...   ..+..+....+.   ..+++++||.+|.|+.+
T Consensus       161 ~~-~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ES-RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HH-HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            32 222   223334444432   23689999999998754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.9e-14  Score=127.00  Aligned_cols=85  Identities=13%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC----------CeEEEEEEecCCchhhhhhcc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG----------GNKKTLILQEIPEEGVKKILS  490 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----------~~~~~~i~Dt~G~~~~~~~~~  490 (507)
                      ++.+||+++|++|||||||+++|+++++...+.++.+.++..+.+..++          ...++.+|||+|+++|..++ 
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~-   81 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT-   81 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH-
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH-
Confidence            3569999999999999999999999999888888888777666655442          23578899999999999988 


Q ss_pred             chhhcccccEEEEEEeC
Q 010548          491 NKEALASCDVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~ad~vilv~D~  507 (507)
                       ..++++||++++|||+
T Consensus        82 -~~~~~~~~~~i~v~d~   97 (186)
T d2f7sa1          82 -TAFFRDAMGFLLMFDL   97 (186)
T ss_dssp             -HHHHTTCCEEEEEEET
T ss_pred             -HHHHhcCCEEEEEEec
Confidence             6899999999999995

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.8e-14  Score=122.57  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=68.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .|||+++|++|||||||+++|+++++...+.++.+. ...+.+..++...++.+||++|.+.+....  ..+++.||+++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~i   81 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAMR--EQYMRTGEGFL   81 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHHH--HHHHHHCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeecccccccccccccccccccccc--cccccccceEE
Confidence            489999999999999999999999999888888774 445667778778899999999999998887  68899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        82 lv~d~   86 (171)
T d2erya1          82 LVFSV   86 (171)
T ss_dssp             EEEET
T ss_pred             Eeecc
Confidence            99995

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=120.08  Aligned_cols=85  Identities=18%  Similarity=0.350  Sum_probs=72.9

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|+++++...+.+|.+.....+.+...+....+.+||++|+.+....+  ..+++.+++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--~~~~~~~~~   81 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR--TPFYRGSDC   81 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH--GGGGTTCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhh--hhhhhccce
Confidence            356899999999999999999999999999999998888888888888778899999999998888777  688999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        82 ~i~~~d~   88 (174)
T d1wmsa_          82 CLLTFSV   88 (174)
T ss_dssp             EEEEEET
T ss_pred             EEEEEee
Confidence            9999995

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.2e-13  Score=120.71  Aligned_cols=83  Identities=19%  Similarity=0.394  Sum_probs=76.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++++...+.+|.+.+...+.....+....+.+|||+|...+...+  ..+++.||+++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~i   79 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG--VAFYRGADCCV   79 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC--CGGGTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccc--cccccCccEEE
Confidence            4899999999999999999999999999999999988888888888888899999999998888777  68899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 ~~~d~   84 (184)
T d1vg8a_          80 LVFDV   84 (184)
T ss_dssp             EEEET
T ss_pred             Eeecc
Confidence            99995

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.4e-13  Score=119.39  Aligned_cols=82  Identities=21%  Similarity=0.327  Sum_probs=72.8

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||++||++|||||||+++|+++.+...+.++.+..+... +...+....+.+||+.|++.+...+  ..+++.+++++
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~i   79 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMR--DQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHH--HHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccch--hhhhhcccccc
Confidence            48999999999999999999999999998888888776554 5556678899999999999998877  78899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        80 iv~d~   84 (166)
T d1ctqa_          80 CVFAI   84 (166)
T ss_dssp             EEEET
T ss_pred             eeecc
Confidence            99995

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=1.6e-13  Score=121.62  Aligned_cols=84  Identities=19%  Similarity=0.434  Sum_probs=59.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCC-CeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG-GNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      +.+||+++|++|||||||+++|+++++...+.++.+...........+ ....+.+|||+|++++...+  ..+++.+++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~   78 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLG--VAFYRGADC   78 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------CCSTTCCE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHH--HHHhhccce
Confidence            368999999999999999999999999988888877666555444443 44578899999999988877  679999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        79 ~ilv~d~   85 (175)
T d1ky3a_          79 CVLVYDV   85 (175)
T ss_dssp             EEEEEET
T ss_pred             EEEEeec
Confidence            9999995

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=2.3e-13  Score=127.08  Aligned_cols=158  Identities=15%  Similarity=0.081  Sum_probs=87.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCC----------------------C------CCCCCCCee---eCCcccCCc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPE----------------------K------VPPVHAPTR---LPPDFYPDR   58 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~----------------------~------~~~~~~~~t---~~~~~~~~~   58 (507)
                      ++.++|+++|+.++|||||+.+|+...-..                      .      ......+.+   ....+...+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            446789999999999999999995311000                      0      000011111   112233567


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHH------HHHHhHHHHHHhcCCCC-cEEEEEecccCCCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLS------RLSSYWLPELRRLEIKV-PIIVAGCKLDLRGDH  131 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~------~~~~~~~~~l~~~~~~~-piilv~NK~Dl~~~~  131 (507)
                      ..+.++||||+..|..........+|++++|+|+..+.-..      ...+ .+..+...  ++ +++++.||+|+....
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~~~--~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHHHc--CCCeEEEEEEcCCCCccc
Confidence            88999999999999998999999999999999998752110      1122 23333444  44 488999999997542


Q ss_pred             Cc-cchhhh---hHHHHHHhcc-----cCcEEEeCcccCCCchHHHHH
Q 010548          132 NA-TSLEEV---MGPIMQQFRE-----IETCVECSATTMIQVPDVFYY  170 (507)
Q Consensus       132 ~~-~~~~~~---~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~~~  170 (507)
                      .. ....+.   +..+..+...     ..+++++||++|.||.++++.
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            21 012222   2222222211     126899999999999886543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.9e-13  Score=117.77  Aligned_cols=84  Identities=24%  Similarity=0.434  Sum_probs=74.2

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|+++++...+.++.+.....+.....++...+.+||+.|.+.+..... ..+++++|+++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMV-QHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTH-HHHHTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccc-eeeecCCCceE
Confidence            58999999999999999999999999999999999888888888887888999999999887764431 57899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        81 lv~d~   85 (165)
T d1z06a1          81 FVYDM   85 (165)
T ss_dssp             EEEET
T ss_pred             EEEEe
Confidence            99995

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=6.4e-13  Score=133.12  Aligned_cols=159  Identities=15%  Similarity=0.119  Sum_probs=96.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeC-Ccc-cCCceEEEEEeCCCCccchhhhH-----Hhhc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLP-PDF-YPDRVPVTIIDTSSSLENKGKLN-----EELK   81 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~-----~~~~   81 (507)
                      ..++|+|+|.+|||||||+|+|++......  .++....+|.. ..+ ......+.+|||||.........     ..+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            358999999999999999999998654222  22222223311 112 13344588999999764332222     3467


Q ss_pred             cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC-------CCccchhhhhHHH----HHHh---
Q 010548           82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-------HNATSLEEVMGPI----MQQF---  147 (507)
Q Consensus        82 ~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~-------~~~~~~~~~~~~~----~~~~---  147 (507)
                      .+|++|++.|..  .+-.+.  .++..+++.  ++|+++|.||+|....       ... ..+.....+    ...+   
T Consensus       135 ~~d~~l~~~~~~--~~~~d~--~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~-~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         135 EYDFFIIISATR--FKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GCSEEEEEESSC--CCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEecCCC--CCHHHH--HHHHHHHHc--CCCEEEEEeCcccccchhhhcccccc-cHHHHHHHHHHHHHHHHHHc
Confidence            789999988743  333333  377778887  7999999999996311       101 111111111    1111   


Q ss_pred             c-ccCcEEEeCccc--CCCchHHHHHHHHHHc
Q 010548          148 R-EIETCVECSATT--MIQVPDVFYYAQKAVL  176 (507)
Q Consensus       148 ~-~~~~~~~~SA~~--g~gi~~l~~~i~~~i~  176 (507)
                      + ...+++.+|...  ..|+.+|.+.+.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            1 122678888764  4589999998887653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.40  E-value=1.8e-13  Score=126.42  Aligned_cols=154  Identities=16%  Similarity=0.130  Sum_probs=96.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------------CCCCCCCee---eCCcccCCce
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEK----------------------------VPPVHAPTR---LPPDFYPDRV   59 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~----------------------------~~~~~~~~t---~~~~~~~~~~   59 (507)
                      +.++|+++|+.++|||||+.+|+...-...                            ......+.+   ....+..+++
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            468999999999999999999963210000                            000011111   1223446788


Q ss_pred             EEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHH------HHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCc
Q 010548           60 PVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLS------RLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA  133 (507)
Q Consensus        60 ~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~------~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~  133 (507)
                      .++++||||+..|...+...++-+|++|+|+|+.++....      ...+ .+...+.. .-.++|++.||+|+......
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e-~l~~~~~~-~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKTM-GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHHT-TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH-HHHHHHHh-CCCceEEEEEcccCCCcccc
Confidence            9999999999999999999999999999999999863211      1111 22222222 13578999999998753221


Q ss_pred             c-chh---hhhHHHHHHhccc---CcEEEeCcccCCCchH
Q 010548          134 T-SLE---EVMGPIMQQFREI---ETCVECSATTMIQVPD  166 (507)
Q Consensus       134 ~-~~~---~~~~~~~~~~~~~---~~~~~~SA~~g~gi~~  166 (507)
                      . ..+   ..+..+...++..   .+++++||.+|.||.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0 111   2233333333321   2678999999999854

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.3e-13  Score=118.31  Aligned_cols=77  Identities=26%  Similarity=0.358  Sum_probs=64.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|+++++.. +.++.+..+ .+.+.++|....+.+|||+|+.++       .++++||++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-------~~~~~ad~~   74 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-------KFSGWADAV   74 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-------HHHHHCSEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeeccccccc-------cccccccee
Confidence            35999999999999999999999999864 445555444 566778878889999999998653       478899999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      |+|||+
T Consensus        75 ilVfd~   80 (175)
T d2bmja1          75 IFVFSL   80 (175)
T ss_dssp             EEEEET
T ss_pred             EEEeec
Confidence            999995

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.36  E-value=1e-12  Score=114.97  Aligned_cols=79  Identities=18%  Similarity=0.294  Sum_probs=68.3

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|.++++...+.||.+..+.  .+..  +...+.+||++|++.+...+  ..+++.+++++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~--~~~~~~~~~~i   75 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMW--ERYCRGVSAIV   75 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTH--HHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeee--eeEEEEEeeccccccccccc--cccccccchhh
Confidence            489999999999999999999999998888888875543  2333  56789999999999999887  78899999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        76 ~v~d~   80 (164)
T d1zd9a1          76 YMVDA   80 (164)
T ss_dssp             EEEET
T ss_pred             ccccc
Confidence            99995

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.6e-12  Score=114.72  Aligned_cols=81  Identities=23%  Similarity=0.291  Sum_probs=64.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCC-CCCccceeEEEEEEcCCCeEEEEEEec---CCchhhhhhccchhhcccc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENY-APTTGEQYAVNVVDQPGGNKKTLILQE---IPEEGVKKILSNKEALASC  498 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt---~G~~~~~~~~~~~~~~~~a  498 (507)
                      -|||+++|++|||||||+++|++..+...+ .++.+.+...+.+.+++....+.+||+   +|+++|  +.  ..+++++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~--~~~~~~~   78 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LH--DHCMQVG   78 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HH--HCCCCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cc--ccccccc
Confidence            589999999999999999999988876544 456666677778888877888888885   566665  33  5689999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        79 ~~~ilvfd~   87 (172)
T d2g3ya1          79 DAYLIVYSI   87 (172)
T ss_dssp             SEEEEEEET
T ss_pred             ceeeeeecc
Confidence            999999995

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.32  E-value=1.2e-12  Score=115.78  Aligned_cols=82  Identities=22%  Similarity=0.341  Sum_probs=65.9

Q ss_pred             ccCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccc
Q 010548          419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASC  498 (507)
Q Consensus       419 ~~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~a  498 (507)
                      +..+.+||+++|++|||||||+++|.++++...+.+ .+  +....+..  +...+.+||++|++++...+  ..+++.+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~-~~--~~~~~i~~--~~~~~~i~d~~g~~~~~~~~--~~~~~~~   84 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPT-QG--FNIKSVQS--QGFKLNVWDIGGQRKIRPYW--RSYFENT   84 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEE-TT--EEEEEEEE--TTEEEEEEECSSCGGGHHHH--HHHHTTC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceee-ee--eeEEEecc--CCeeEeEeeccccccchhHH--HHHhhcc
Confidence            344569999999999999999999999998655433 33  22333433  46789999999999998887  6899999


Q ss_pred             cEEEEEEeC
Q 010548          499 DVTIFVYDR  507 (507)
Q Consensus       499 d~vilv~D~  507 (507)
                      |++++|||+
T Consensus        85 ~~ii~v~d~   93 (176)
T d1fzqa_          85 DILIYVIDS   93 (176)
T ss_dssp             SEEEEEEET
T ss_pred             ceeEEeecc
Confidence            999999995

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.30  E-value=4.6e-12  Score=110.72  Aligned_cols=78  Identities=24%  Similarity=0.344  Sum_probs=63.6

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||+++|.++.+. .+.+|.+...  ..+.  .+...+.+|||+|+++++..+  ..+++.+++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~--~~~~~~~~~~i   74 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLE--HRGFKLNIWDVGGQKSLRSYW--RNYFESTDGLI   74 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEE--ETTEEEEEEEECCSHHHHTTG--GGGCTTCSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eecc--ccccceeeeecCcchhhhhHH--Hhhhhhhhcce
Confidence            489999999999999999999988764 3445655332  2333  356789999999999998877  68999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        75 ~v~d~   79 (165)
T d1ksha_          75 WVVDS   79 (165)
T ss_dssp             EEEET
T ss_pred             eeeec
Confidence            99995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=6.1e-12  Score=114.25  Aligned_cols=86  Identities=14%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             hhccCCEEEEEEeCCChh-hHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhcccCcEEEeC
Q 010548           79 ELKRADAVVLTYACNQQS-TLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECS  157 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~~-s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (507)
                      ...+.|.+++|+++.+|. +...++ +++-.....  ++|.+||.||+||.++..    .+....+...+....+++.+|
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ld-R~Lv~a~~~--~i~pvIvlnK~DL~~~~~----~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIID-KFLVLAEKN--ELETVMVINKMDLYDEDD----LRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGCCHHH----HHHHHHHHHHHTTTSCEEECC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEeCcccCCHHH----HHHHHHhhcccccceeEEEec
Confidence            456789999999998864 444454 366666666  899999999999976321    122333334333334789999


Q ss_pred             cccCCCchHHHHHH
Q 010548          158 ATTMIQVPDVFYYA  171 (507)
Q Consensus       158 A~~g~gi~~l~~~i  171 (507)
                      |+++.|++++...+
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999998876543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=3.1e-12  Score=114.72  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||++||+.|||||||++||...++..     .+.    ....+.....++.+|||+|++++.+++  ..+++.+++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~--~~~~~~~~~~i   70 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAG-----TGI----VETHFTFKDLHFKMFDVGGQRSERKKW--IHCFEGVTAII   70 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCC-----CSE----EEEEEEETTEEEEEEEECCSGGGGGGG--GGGCTTCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-----ccE----EEEEEEeeeeeeeeeccccccccccch--hhcccCCceee
Confidence            5899999999999999999999877643     332    122333467889999999999999998  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        71 ~v~d~   75 (195)
T d1svsa1          71 FCVAL   75 (195)
T ss_dssp             EEEEG
T ss_pred             eEEee
Confidence            99984

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.27  E-value=8.5e-12  Score=117.33  Aligned_cols=119  Identities=16%  Similarity=0.082  Sum_probs=76.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCee---eCCcccCCceEEEEEeCCCCccchhh-------hHH-
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTR---LPPDFYPDRVPVTIIDTSSSLENKGK-------LNE-   78 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~-   78 (507)
                      ...++|+++|.+|||||||+|+|++......  +..+++|   ........+..+.++||||..+....       ... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~v--s~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI--SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC--CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceee--cCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            4579999999999999999999999774322  2222333   12233356788999999997532221       111 


Q ss_pred             -hhccCCEEEEEEeCCCh-hhHHHHHHhHHHHHHhc-CC--CCcEEEEEecccCCCCCC
Q 010548           79 -ELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRL-EI--KVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus        79 -~~~~ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~-~~--~~piilv~NK~Dl~~~~~  132 (507)
                       .....|+++||++++.. -+..+..  .+..+... +.  ..++|+|.||+|......
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~--~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~  164 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKL--VAKAITDSFGKGIWNKAIVALTHAQFSPPDG  164 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHH--HHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHH--HHHHHHHHcchhhhhCEEEEEECcccCCcCC
Confidence             22467899999988653 2333322  34444432 21  368999999999876443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.23  E-value=6.5e-12  Score=110.76  Aligned_cols=79  Identities=22%  Similarity=0.254  Sum_probs=63.0

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++||+++.+.... +|.+....  ..  ......+.+||++|++.+...+  ..++++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~~~--~~--~~~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~i   83 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVE--TV--TYKNVKFNVWDVGGQDKIRPLW--RHYYTGTQGL   83 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEEEE--EE--EETTEEEEEEEESCCGGGHHHH--GGGTTTCCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeeeEE--Ee--eccceeeEEecCCCcchhhhHH--HhhhcccceE
Confidence            4599999999999999999999988875433 33333222  22  2256788999999999999887  6899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|||+
T Consensus        84 i~v~D~   89 (173)
T d1e0sa_          84 IFVVDC   89 (173)
T ss_dssp             EEEEET
T ss_pred             EEEEec
Confidence            999995

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.22  E-value=5.9e-12  Score=112.01  Aligned_cols=80  Identities=21%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDV  500 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~  500 (507)
                      .+.+||+++|++|||||||+++|.++++.... +|.+....  .+..  +..++.+||++|++++...+  ..+++.+++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~~--~~~~--~~~~~~i~D~~g~~~~~~~~--~~~~~~~~~   87 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVE--TLSY--KNLKLNVWDLGGQTSIRPYW--RCYYADTAA   87 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCEE--EEEE--TTEEEEEEEEC----CCTTG--GGTTTTEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEEE--EEee--CCEEEEEEecccccccchhH--Hhhhcccee
Confidence            34699999999999999999999988876543 45554332  2222  56789999999999999888  689999999


Q ss_pred             EEEEEeC
Q 010548          501 TIFVYDR  507 (507)
Q Consensus       501 vilv~D~  507 (507)
                      +++|||+
T Consensus        88 ii~v~d~   94 (182)
T d1moza_          88 VIFVVDS   94 (182)
T ss_dssp             EEEEEET
T ss_pred             EEEEeee
Confidence            9999995

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.6e-11  Score=110.44  Aligned_cols=77  Identities=16%  Similarity=0.117  Sum_probs=65.9

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||++||..+++.  +.||.|..+.  .+  ..+...+.+||++|++++...+  ..+++.+++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~i   73 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--PF--DLQSVIFRMVDVGGQRSERRKW--IHCFENVTSIM   73 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--EE--ECSSCEEEEEECCCSTTGGGGG--GGGCSSCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--EE--eccceeeeeccccccccccccc--cccccccceee
Confidence            589999999999999999999988874  6688886543  23  2367788999999999999998  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      +|||+
T Consensus        74 ~~~~~   78 (200)
T d2bcjq2          74 FLVAL   78 (200)
T ss_dssp             EEEEG
T ss_pred             Eeeec
Confidence            99984

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.20  E-value=1.5e-11  Score=106.36  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=62.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIF  503 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vil  503 (507)
                      +||+++|+||||||||+++|+++++...+..+.....     ........+.+||++|.+.+....  ..+++.++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~i~   73 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-----TVEYKNISFTVWDVGGQDKIRPLW--RHYFQNTQGLIF   73 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEE-----EEECSSCEEEEEECCCCGGGHHHH--HHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEE-----EEeeeeEEEEEecCCCcccchhhh--hhhhccceeEEE
Confidence            5999999999999999999999998766554443322     223367789999999999888776  789999999999


Q ss_pred             EEeC
Q 010548          504 VYDR  507 (507)
Q Consensus       504 v~D~  507 (507)
                      +||+
T Consensus        74 ~~d~   77 (160)
T d1r8sa_          74 VVDS   77 (160)
T ss_dssp             EEET
T ss_pred             EEEe
Confidence            9985

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=3e-11  Score=117.22  Aligned_cols=114  Identities=12%  Similarity=0.127  Sum_probs=81.8

Q ss_pred             ce-EEEEEcCCCCCHHHHHHHHhcCCCCCC--------C---C--CCCCCeeeCC-------------------cccCCc
Q 010548           12 GV-RVVVVGDRGTGKSSLIAAAATESVPEK--------V---P--PVHAPTRLPP-------------------DFYPDR   58 (507)
Q Consensus        12 ~~-kV~ivG~~~vGKSSLin~l~~~~~~~~--------~---~--~~~~~~t~~~-------------------~~~~~~   58 (507)
                      .+ +|+|+|+.++|||||+.+|+.......        +   .  ....+.|+..                   ...++.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            45 599999999999999999973111000        0   0  0001112111                   112356


Q ss_pred             eEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~  129 (507)
                      +.++++||||+.+|......+++-+|++|+|+|+..+-..+...  .+....+.  ++|+++++||+|...
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~--~~~~a~~~--~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET--VLRQALGE--RIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH--HHHHHHHT--TCEEEEEEECHHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH--HHHHHHHc--CCCeEEEEECccccc
Confidence            78999999999999999999999999999999999987776655  45555555  799999999999654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=4.5e-11  Score=105.77  Aligned_cols=84  Identities=20%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhc------cchhhcc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKIL------SNKEALA  496 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~  496 (507)
                      .-+|+++|.+|||||||+|+|++.+....+..++++.......... ....+.+|||+|........      ....+++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeee-eeeeeeecccccccccccccchhcccccccccc
Confidence            3479999999999999999999998777666655555444333333 45678899999974422111      1135678


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .||++++|+|+
T Consensus        84 ~ad~il~v~D~   94 (178)
T d1wf3a1          84 DVNAVVWVVDL   94 (178)
T ss_dssp             SCSEEEEEEET
T ss_pred             cccceeeeech
Confidence            99999999996

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.7e-11  Score=110.47  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEE
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTI  502 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vi  502 (507)
                      .+||+++|++|||||||++||.   +...+.||.|...  ..+  ..+..++.+||++|++++...+  ..+++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~--~~~~~~~~~~D~~gq~~~~~~~--~~~~~~~~~~~   72 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDF--EIKNVPFKMVDVGGQRSERKRW--FECFDSVTSIL   72 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEE--EETTEEEEEEEECC-------C--TTSCTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEE--eeeeeeeeeecccceeeecccc--cccccccceeE
Confidence            5899999999999999999993   5566778888433  233  3367889999999999999888  78999999999


Q ss_pred             EEEeC
Q 010548          503 FVYDR  507 (507)
Q Consensus       503 lv~D~  507 (507)
                      ++||.
T Consensus        73 ~~~~~   77 (200)
T d1zcba2          73 FLVSS   77 (200)
T ss_dssp             EEEET
T ss_pred             EEEEc
Confidence            99984

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.15  E-value=2.5e-11  Score=112.69  Aligned_cols=116  Identities=17%  Similarity=-0.018  Sum_probs=69.5

Q ss_pred             ceEEEEEeCCCCccchhhhHH---h--hccCCEEEEEEeCCChhhHHHHHHhHH-HH--HHhcCCCCcEEEEEecccCCC
Q 010548           58 RVPVTIIDTSSSLENKGKLNE---E--LKRADAVVLTYACNQQSTLSRLSSYWL-PE--LRRLEIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~---~--~~~ad~il~V~D~~~~~s~~~~~~~~~-~~--l~~~~~~~piilv~NK~Dl~~  129 (507)
                      ...+.++|+||+.+.......   .  ....+++++++|+.............. ..  ..+.  ..|.++|+||+|+..
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~  171 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLS  171 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCC
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeecccccc
Confidence            445899999998765433221   1  234678999999865433333221111 11  1223  689999999999986


Q ss_pred             CCCccchh------------------------hhhHHHHHHhcccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          130 DHNATSLE------------------------EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       130 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ........                        ..+......+....+++++||++|+|+++|++.|.+.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            42210000                        00011112222334789999999999999999987754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=7.3e-11  Score=102.32  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh------hhccchhhccc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK------KILSNKEALAS  497 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~~~  497 (507)
                      +||+++|++|||||||+|+|++.+...++..+++++......... ....+.++|++|.....      ....+..+++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeec-cCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            799999999999999999999998877766666655544333222 45678889999964322      12223567889


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      +|++++++|+
T Consensus        81 ~d~~i~~~d~   90 (161)
T d2gj8a1          81 ADRVLFMVDG   90 (161)
T ss_dssp             CSEEEEEEET
T ss_pred             ccccceeecc
Confidence            9999999985

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=1.2e-11  Score=107.41  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh-------hhccchhhcc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK-------KILSNKEALA  496 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~  496 (507)
                      +||+++|.||||||||+|+|++.+....+..+++++......... ....+.+|||+|.....       ....+...++
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            699999999999999999999988776666555544433222222 45678899999942210       1112234578


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .||++++|+|+
T Consensus        80 ~ad~ii~v~d~   90 (160)
T d1xzpa2          80 KADIVLFVLDA   90 (160)
T ss_dssp             HCSEEEEEEET
T ss_pred             hCCEEEEEEeC
Confidence            89999999996

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=1.6e-11  Score=111.86  Aligned_cols=84  Identities=19%  Similarity=0.285  Sum_probs=56.1

Q ss_pred             hhccCCEEEEEEeCCCh-hhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchhhhhHHHHHHhccc-CcEEEe
Q 010548           79 ELKRADAVVLTYACNQQ-STLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREI-ETCVEC  156 (507)
Q Consensus        79 ~~~~ad~il~V~D~~~~-~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  156 (507)
                      ...+.|.+++|+++.++ -+...+++ ++-.....  ++|.+||.||+||..+...   .+....+...+..+ .+++.+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR-~Lv~a~~~--~i~pvIvlnK~DL~~~~~~---~~~~~~~~~~y~~~g~~v~~~   80 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDR-FLVLVEAN--DIQPIICITKMDLIEDQDT---EDTIQAYAEDYRNIGYDVYLT   80 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHH-HHHHHHTT--TCEEEEEEECGGGCCCHHH---HHHHHHHHHHHHHHTCCEEEC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHH-HHHHHHHc--CCCEEEEEecccccccHHH---HHHHHHHHHHHhhccccceee
Confidence            45688999999999876 44555554 66555555  8999999999999764221   22233333333211 268999


Q ss_pred             CcccCCCchHHH
Q 010548          157 SATTMIQVPDVF  168 (507)
Q Consensus       157 SA~~g~gi~~l~  168 (507)
                      ||+++.|++++.
T Consensus        81 Sa~~~~gl~~L~   92 (231)
T d1t9ha2          81 SSKDQDSLADII   92 (231)
T ss_dssp             CHHHHTTCTTTG
T ss_pred             ecCChhHHHHHH
Confidence            999988877644

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=1.1e-10  Score=105.75  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=61.9

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      +|+++|++|||||||+|+|+++++...+ ++.+....... ...+....+.+||++|+++++.... ..+++.++++++|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~-~~~~~~~~~~~~d~~g~~~~~~~~~-~~~~~~~~~~i~v   78 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYK-VNNNRGNSLTLIDLPGHESLRFQLL-DRFKSSARAVVFV   78 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEE-CSSTTCCEEEEEECCCCHHHHHHHH-HHHGGGEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEE-Eeeeeeeeeeeeeccccccccchhh-hhhhhhccccceE
Confidence            6999999999999999999999887655 55554443322 2234677899999999998864321 5778999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      ||+
T Consensus        79 ~D~   81 (207)
T d2fh5b1          79 VDS   81 (207)
T ss_dssp             EET
T ss_pred             EEc
Confidence            995

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=2.4e-10  Score=101.12  Aligned_cols=82  Identities=22%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-----hccchhhccccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-----ILSNKEALASCD  499 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~~~~~~~~~ad  499 (507)
                      .|+++|+||||||||+|+|++.+......+..+++......... ...++.+|||+|......     ......++..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeec-CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            48999999999999999999988877776777777766555554 566788999999533111     011235678899


Q ss_pred             EEEEEEeC
Q 010548          500 VTIFVYDR  507 (507)
Q Consensus       500 ~vilv~D~  507 (507)
                      ++++++|+
T Consensus        82 ~~~~~~d~   89 (180)
T d1udxa2          82 VLLYVLDA   89 (180)
T ss_dssp             EEEEEEET
T ss_pred             hhhhhccc
Confidence            99999984

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=3.3e-10  Score=109.43  Aligned_cols=107  Identities=13%  Similarity=0.114  Sum_probs=60.3

Q ss_pred             ceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCCCccchh
Q 010548           58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLE  137 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~  137 (507)
                      ++.+.+++|.|.....   ......+|.+++|.++..++..+.+...++    +    .+=++|+||+|+..........
T Consensus       146 g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~----e----~aDi~VvNKaD~~~~~~~~~~~  214 (327)
T d2p67a1         146 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLM----E----VADLIVINKDDGDNHTNVAIAR  214 (327)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHH----H----HCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhh----c----cccEEEEEeecccchHHHHHHH
Confidence            3456667776633221   145678999999998776655444332222    1    2348899999987642210011


Q ss_pred             hhhHHHHHHhc-----ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          138 EVMGPIMQQFR-----EIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       138 ~~~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      ..+......+.     ...+++.|||++|.||+++++.|.+..
T Consensus       215 ~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         215 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            11121111111     123689999999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=6.1e-10  Score=96.00  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=59.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEEEEE
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFV  504 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv  504 (507)
                      ||++||+||||||||+|+++++++... .|+.++...  ....  ...+..+||+.|...+....  ..+++.+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-~~t~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   74 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPTSE--ELAI--GNIKFTTFDLGGHIQARRLW--KDYFPEVNGIVFL   74 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCSCEEE--EECC--TTCCEEEEECCCSGGGGGGG--GGGCTTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-eceeeEeEE--Eecc--CCeeEEEEeeccchhhhhhH--hhhhhheeeeeee
Confidence            899999999999999999999988653 344443322  2222  45567889999998888777  6788999999999


Q ss_pred             EeC
Q 010548          505 YDR  507 (507)
Q Consensus       505 ~D~  507 (507)
                      +|+
T Consensus        75 ~d~   77 (166)
T d2qtvb1          75 VDA   77 (166)
T ss_dssp             EET
T ss_pred             ccc
Confidence            985

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=5e-10  Score=102.56  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=63.1

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||+++|..+++    .||.|..  ...+..  +..++.+||++|+++++..+  ..++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~--~~~~~~~~D~~Gq~~~r~~w--~~~~~~~~~i   74 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQV--DKVNFHMFDVGGQRDERRKW--IQCFNDVTAI   74 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEE--TTEEEEEEECCCSTTTTTGG--GGGCTTCSEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEE--CcEEEEEEecCccceeccch--hhhcccccce
Confidence            458999999999999999999987654    3677733  333444  56889999999999999998  7899999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|+|.
T Consensus        75 i~v~d~   80 (221)
T d1azta2          75 IFVVAS   80 (221)
T ss_dssp             EEEEET
T ss_pred             EEEEEc
Confidence            999984

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.96  E-value=1.7e-09  Score=93.58  Aligned_cols=79  Identities=22%  Similarity=0.268  Sum_probs=61.5

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||++||++|||||||+++|+++++...+ ++.+...  .....  +...+.+|+..|.+.+....  ...++.++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   76 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ETVTY--KNLKFQVWDLGGLTSIRPYW--RCYYSNTDAV   76 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EEEEE--TTEEEEEEEECCCGGGGGGG--GGGCTTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee--eeecc--CceEEEEeeccccccccccc--hhhhhhhhhh
Confidence            3589999999999999999999999987644 3333222  12222  56788899999998888776  6788999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++++|+
T Consensus        77 ~~~~~~   82 (169)
T d1upta_          77 IYVVDS   82 (169)
T ss_dssp             EEEEET
T ss_pred             hhhhhh
Confidence            999985

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=2.5e-09  Score=102.30  Aligned_cols=83  Identities=16%  Similarity=0.229  Sum_probs=56.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCccc-----------------CC---ceEEEEEeCCCC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFY-----------------PD---RVPVTIIDTSSS   69 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~-----------------~~---~~~~~i~Dt~G~   69 (507)
                      ...+||.|||.||||||||+|++++....  .+...|.+|+.....                 .+   ...+.++|.||.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~--~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL   85 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLG--NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   85 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTT--STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCC--CcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccc
Confidence            35689999999999999999999976531  112223333221111                 11   246899999996


Q ss_pred             ccch-------hhhHHhhccCCEEEEEEeCCC
Q 010548           70 LENK-------GKLNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        70 ~~~~-------~~~~~~~~~ad~il~V~D~~~   94 (507)
                      ....       ...-..++.||++++|+|+.+
T Consensus        86 v~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          86 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            5322       234577899999999999865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.94  E-value=9.4e-10  Score=106.10  Aligned_cols=153  Identities=12%  Similarity=0.076  Sum_probs=88.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC----CCCCCC-----CCCC------CCeeeCCcc--------------------
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATE----SVPEKV-----PPVH------APTRLPPDF--------------------   54 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~----~~~~~~-----~~~~------~~~t~~~~~--------------------   54 (507)
                      .+.++|.|.|+||||||||+++|...    .....+     .+..      ...+.-...                    
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            35689999999999999999999842    110000     0000      000000000                    


Q ss_pred             -----------cCCceEEEEEeCCCCccchhhhHHhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEe
Q 010548           55 -----------YPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGC  123 (507)
Q Consensus        55 -----------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~N  123 (507)
                                 ...++.+.++.|.|......   ....-+|.+++|..+..++..+.+..-.+        ..+=++|+|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~gil--------E~aDi~vvN  197 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVN  197 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhhHh--------hhhheeeEe
Confidence                       01356778888888543222   24456999999999988765544322111        134499999


Q ss_pred             cccCCCCCCccchhhhhHHHHHHhc--------ccCcEEEeCcccCCCchHHHHHHHHHH
Q 010548          124 KLDLRGDHNATSLEEVMGPIMQQFR--------EIETCVECSATTMIQVPDVFYYAQKAV  175 (507)
Q Consensus       124 K~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~g~gi~~l~~~i~~~i  175 (507)
                      |+|+......  .......+...+.        ...+++.|||++|.|++++++.|.+..
T Consensus       198 KaD~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         198 KADDGDGERR--ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             CCSTTCCHHH--HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccccchHH--HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            9998764322  1111111222111        123799999999999999999997754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.93  E-value=1e-09  Score=96.29  Aligned_cols=79  Identities=16%  Similarity=0.232  Sum_probs=59.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +.+||+++|++|||||||++|+.++++...+...+.....   ...  ...++.+||+.|.+......  ..+++.++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~   86 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE---IVI--NNTRFLMWDIGGQESLRSSW--NTYYTNTEFV   86 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEE---EEE--TTEEEEEEECCC----CGGG--HHHHTTCCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEE---Eee--cceEEEEeccccccccccch--hhhhccceee
Confidence            4589999999999999999999999987655444433222   222  45788899999998888776  6788999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++|+|+
T Consensus        87 i~v~d~   92 (177)
T d1zj6a1          87 IVVVDS   92 (177)
T ss_dssp             EEEEET
T ss_pred             eeeccc
Confidence            999985

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=7.9e-10  Score=98.04  Aligned_cols=84  Identities=18%  Similarity=0.252  Sum_probs=53.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEE-EEEcCCCeEEEEEEecCCchhhhhhc----------c
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN-VVDQPGGNKKTLILQEIPEEGVKKIL----------S  490 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~----------~  490 (507)
                      ..+||+++|.+|||||||+|++++.+.........+++.... .+..  +...+.++|++|........          .
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI--DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE--TTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeecc--CCceeeeeccCCccccccccccccccchhHH
Confidence            359999999999999999999999887655554444433322 2233  34567789999875422211          1


Q ss_pred             chhhcccccEEEEEEeC
Q 010548          491 NKEALASCDVTIFVYDR  507 (507)
Q Consensus       491 ~~~~~~~ad~vilv~D~  507 (507)
                      ...+++.||++++|+|+
T Consensus        85 ~~~~~~~~dvii~v~d~  101 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDA  101 (186)
T ss_dssp             HHHHHHHCSEEEEEEET
T ss_pred             HHHHHhcCCEEEEeecc
Confidence            13456889999999996

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.87  E-value=2.6e-09  Score=94.02  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccchhhcccccEE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSNKEALASCDVT  501 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~v  501 (507)
                      +..||++||++|||||||+++|.++.+...+.....+...   +...  ...+..||+.+...+....  ..+++.++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   84 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE---LTIA--GMTFTTFDLGGHIQARRVW--KNYLPAINGI   84 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE---EEET--TEEEEEEEECC----CCGG--GGGGGGCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE---EEec--ccccccccccchhhhhhHH--hhhhccccee
Confidence            3589999999999999999999999987655333333222   3333  4567789999998888776  6888999999


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++++|+
T Consensus        85 ~~~~d~   90 (186)
T d1f6ba_          85 VFLVDC   90 (186)
T ss_dssp             EEEEET
T ss_pred             eeeeec
Confidence            999985

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=6.3e-10  Score=98.74  Aligned_cols=81  Identities=15%  Similarity=0.014  Sum_probs=57.5

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh-----ccchhhccccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-----LSNKEALASCD  499 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----~~~~~~~~~ad  499 (507)
                      +|+++|+||||||||+|++++.+....+.+..|++......... +...+.+|||+|..+....     .....+++.++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999988776666666666655555555 4556789999996332211     01124456788


Q ss_pred             EEEEEEe
Q 010548          500 VTIFVYD  506 (507)
Q Consensus       500 ~vilv~D  506 (507)
                      .++.+++
T Consensus        82 ~i~~~v~   88 (185)
T d1lnza2          82 VIVHVID   88 (185)
T ss_dssp             EEEEEEE
T ss_pred             hhhheee
Confidence            8877765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.83  E-value=4.2e-09  Score=92.94  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCch-----------hhhhhc--cc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE-----------GVKKIL--SN  491 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~--~~  491 (507)
                      .|+++|.||||||||+|++++.+.. ++..+++|+... .+...    .+.++||+|..           ++....  ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~-~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKII-EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCE-EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeeccc-ccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999998764 444444554432 22222    25679999941           111110  01


Q ss_pred             hhhcccccEEEEEEeC
Q 010548          492 KEALASCDVTIFVYDR  507 (507)
Q Consensus       492 ~~~~~~ad~vilv~D~  507 (507)
                      ...++.+|++++|+|+
T Consensus        76 ~~~~~~~d~~~~vvD~   91 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDG   91 (184)
T ss_dssp             HHHGGGCCEEEEEEET
T ss_pred             hhcccccchheeeeec
Confidence            3456789999999985

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.80  E-value=3.9e-09  Score=93.12  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEE-----EcCCCeEEEEEEecCCchhhhhhccchhhcc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV-----DQPGGNKKTLILQEIPEEGVKKILSNKEALA  496 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~  496 (507)
                      +.++|++||.||+|||||+|+|++......++.+.+++..-...     ........+.++|++|...|....  ...+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAV--VSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHH--HHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccch--hhhhh
Confidence            45899999999999999999999765444333222211111011     111144567789999998877655  67888


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+|++++|+|+
T Consensus        82 ~~d~~ilv~d~   92 (179)
T d1wb1a4          82 IIDLALIVVDA   92 (179)
T ss_dssp             SCCEEEEEEET
T ss_pred             hcccccccccc
Confidence            99999999986

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=4.7e-09  Score=91.69  Aligned_cols=82  Identities=17%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-------hccchhhccc
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-------ILSNKEALAS  497 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~  497 (507)
                      .|+++|.+|||||||+|+|++.....++...+++........ ......+.+||++|......       ...+..++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV-EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEE-EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccc-cccccccccccccceeeeecccccccccccccccccc
Confidence            689999999999999999999887766655555544333222 22566788999998422110       1112456688


Q ss_pred             ccEEEEEEeC
Q 010548          498 CDVTIFVYDR  507 (507)
Q Consensus       498 ad~vilv~D~  507 (507)
                      ||+++++.|+
T Consensus        81 ad~i~~~~~~   90 (171)
T d1mkya1          81 ADLVLFVVDG   90 (171)
T ss_dssp             CSEEEEEEET
T ss_pred             CcEEEEeecc
Confidence            9999999874

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.75  E-value=3.1e-09  Score=97.52  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             EEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEE----------------EcCCCeEEEEEEecCCchhhhhhc
Q 010548          426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV----------------DQPGGNKKTLILQEIPEEGVKKIL  489 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~~~~~i~Dt~G~~~~~~~~  489 (507)
                      |+|+|.+|+|||||+|++++...........+.+......                .+..+..++.++||+|.+.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999999754333221111111111111                122245578899999998887665


Q ss_pred             cchhhcccccEEEEEEeC
Q 010548          490 SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       490 ~~~~~~~~ad~vilv~D~  507 (507)
                        ...+..||++++|+|+
T Consensus        88 --~~~~~~~D~~ilVvda  103 (227)
T d1g7sa4          88 --KRGGALADLAILIVDI  103 (227)
T ss_dssp             --CSSSBSCSEEEEEEET
T ss_pred             --hhcccccceEEEEEec
Confidence              5678899999999996

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2.8e-09  Score=96.09  Aligned_cols=78  Identities=22%  Similarity=0.241  Sum_probs=54.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhccc--hhhcccccEE
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILSN--KEALASCDVT  501 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~--~~~~~~ad~v  501 (507)
                      ..|+++|+||||||||+|+|+++++.    ++.+......  ....+...+.+|||+|.+++...+..  ......++.+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            47999999999999999999998764    2333333222  23335566788999999887655410  1234556888


Q ss_pred             EEEEeC
Q 010548          502 IFVYDR  507 (507)
Q Consensus       502 ilv~D~  507 (507)
                      ++++|+
T Consensus        78 i~~vd~   83 (209)
T d1nrjb_          78 IFMVDS   83 (209)
T ss_dssp             EEEEET
T ss_pred             ceEEEE
Confidence            888884

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.70  E-value=1.6e-08  Score=94.46  Aligned_cols=85  Identities=18%  Similarity=0.096  Sum_probs=57.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhh-------hccchh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKK-------ILSNKE  493 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~  493 (507)
                      ...++|+++|++|||||||+|.+++++...++...++|+......... ++..+.++||+|......       ......
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            456999999999999999999999998877776555555433333233 456788999999643111       110011


Q ss_pred             hcccccEEEEEEe
Q 010548          494 ALASCDVTIFVYD  506 (507)
Q Consensus       494 ~~~~ad~vilv~D  506 (507)
                      .....|++++|++
T Consensus       109 ~~~~~~~il~v~~  121 (257)
T d1h65a_         109 LDKTIDVLLYVDR  121 (257)
T ss_dssp             TTCEECEEEEEEE
T ss_pred             hcCCCCeEEEEEE
Confidence            2245688888865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.63  E-value=1.2e-08  Score=98.53  Aligned_cols=82  Identities=22%  Similarity=0.305  Sum_probs=45.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCC--CCC--eee----------CCcccC---------CceEEEEEeCCC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPE-KVPPV--HAP--TRL----------PPDFYP---------DRVPVTIIDTSS   68 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~-~~~~~--~~~--~t~----------~~~~~~---------~~~~~~i~Dt~G   68 (507)
                      +||++||.||||||||+|+|++.+... ++|-+  .|.  ++.          ...+..         ....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999876322 13311  111  110          001111         125799999999


Q ss_pred             Cccchh----h---hHHhhccCCEEEEEEeCCC
Q 010548           69 SLENKG----K---LNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        69 ~~~~~~----~---~~~~~~~ad~il~V~D~~~   94 (507)
                      ......    +   .-..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            743211    1   1245789999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=9.6e-08  Score=91.05  Aligned_cols=118  Identities=20%  Similarity=0.216  Sum_probs=72.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCCC-CCeeeC-C------------------ccc---------------
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPVH-APTRLP-P------------------DFY---------------   55 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~~-~~~t~~-~------------------~~~---------------   55 (507)
                      ..+|+|+|..++|||||+|+|++..+.+. ..+.. ..+.+. .                  ++.               
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45899999999999999999999886322 22211 111100 0                  000               


Q ss_pred             ----------------CCceEEEEEeCCCCccc-------------hhhhHHhhccCC-EEEEEEeCCChhhHHHHHHhH
Q 010548           56 ----------------PDRVPVTIIDTSSSLEN-------------KGKLNEELKRAD-AVVLTYACNQQSTLSRLSSYW  105 (507)
Q Consensus        56 ----------------~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad-~il~V~D~~~~~s~~~~~~~~  105 (507)
                                      .....+.++||||....             ..+...|+...+ ++++|.++....+-..... +
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~-~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK-I  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH-H
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH-H
Confidence                            01224789999997531             123445676776 4556666665544444333 5


Q ss_pred             HHHHHhcCCCCcEEEEEecccCCCCCC
Q 010548          106 LPELRRLEIKVPIIVAGCKLDLRGDHN  132 (507)
Q Consensus       106 ~~~l~~~~~~~piilv~NK~Dl~~~~~  132 (507)
                      .+.+...  ..++++|.||+|......
T Consensus       185 ~~~~~~~--~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         185 AKEVDPQ--GQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHHCTT--CSSEEEEEECGGGSCTTC
T ss_pred             HHHhCcC--CCceeeEEeccccccchh
Confidence            5555444  578999999999887533

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=4.1e-08  Score=85.95  Aligned_cols=83  Identities=18%  Similarity=0.215  Sum_probs=56.8

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhh-------ccchhhcc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKI-------LSNKEALA  496 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~  496 (507)
                      =.|+++|.+|||||||+|+|++.+...++.+..+++..+...... +...+..+|+.|.......       ........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeec-CCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            459999999999999999999998887777766666655555444 4555667888875332110       01123345


Q ss_pred             cccEEEEEEeC
Q 010548          497 SCDVTIFVYDR  507 (507)
Q Consensus       497 ~ad~vilv~D~  507 (507)
                      .+++++++.|+
T Consensus        85 ~~~~~l~~~d~   95 (179)
T d1egaa1          85 DVELVIFVVEG   95 (179)
T ss_dssp             CEEEEEEEEET
T ss_pred             hcceeEEEEec
Confidence            67888888774

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=98.57  E-value=4.1e-08  Score=85.61  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcC-CCCCHHHHHHHHHHHHh----hccCCccCCCcchhhHHHHHHHHH
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFN-APLQPAEIVGVKRVVQE----KQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~-~~l~~~~~~~l~~~i~~----~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      .++.++.+|...|.+.+|.++.+|+.....+... ..........+......    ..+....++.++++.|+.+....+
T Consensus         4 ~~~~l~~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~   83 (174)
T d2scpa_           4 WVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMV   83 (174)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHTGGGTTTTSCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCCCCcEeHHHHHHHHHHHhccccchhHHHHHhHHhhhhhccccccccCCCCcCcHHHHHHHHHhhh
Confidence            4678899999999999999999999888765321 22223333333333322    222333467899999998866543


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCC
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES  348 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~  348 (507)
                      ...                                     .....-.++++.+|+.+|.|+||.|+.+|+..++......
T Consensus        84 ~~~-------------------------------------~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~  126 (174)
T d2scpa_          84 KNP-------------------------------------EAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLD  126 (174)
T ss_dssp             SCG-------------------------------------GGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred             cch-------------------------------------hhHHHHHHHHHHHHHHHCCCccccCCHHHHHHHHHHHhhh
Confidence            211                                     1234456789999999999999999999999998764332


Q ss_pred             CCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          349 PWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       349 p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      +-........+++|.+|.|++++|+.+|.-.
T Consensus       127 ~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~f  157 (174)
T d2scpa_         127 KTMAPASFDAIDTNNDGLLSLEEFVIAGSDF  157 (174)
T ss_dssp             GGGHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCCCCCCcEeHHHHHHHHHHH
Confidence            2222334456789999999999999988643

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=98.54  E-value=2.6e-07  Score=81.02  Aligned_cols=154  Identities=14%  Similarity=0.150  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhh-ccCCCCCccChhhhHHHHhHhc---CCCCCHHHHHHHHHHHHhhc------cCCccCCCcchhhHH
Q 010548          192 PRCVRALKRIFII-CDHDMDGALNDAELNEFQVKCF---NAPLQPAEIVGVKRVVQEKQ------HDGVNDLGLTLSGFL  261 (507)
Q Consensus       192 ~~~~~~l~~~~~~-~d~~~d~~l~~~el~~~~~~~~---~~~l~~~~~~~l~~~i~~~~------~~~~~~~~~~~~~f~  261 (507)
                      +.-.+.++++|.. +|.|.+|.++.+|+..+..+..   ...........+........      .+...++.++++.|+
T Consensus         4 ~~q~~~i~~~F~~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~   83 (185)
T d2sasa_           4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYL   83 (185)
T ss_dssp             HHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHHHHHhCcCCCCcEeeeHhh
Confidence            4455668889975 6999999999999998887632   22333444444433332221      122346789999999


Q ss_pred             HHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhh
Q 010548          262 FLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL  341 (507)
Q Consensus       262 ~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~  341 (507)
                      .++.........                                 ...+...-.+++..+|..+|.|++|.|+.+|+..+
T Consensus        84 ~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~  130 (185)
T d2sasa_          84 AMWEKTIATCKS---------------------------------VADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNY  130 (185)
T ss_dssp             HHHHHHHHTCCS---------------------------------GGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHH
T ss_pred             HHHHHHhhhhhh---------------------------------hhhhhHHHHHHHHHHHHHHccCCCccCCHHHHHHH
Confidence            887655533221                                 11233445678999999999999999999999999


Q ss_pred             hccCCCCCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          342 FLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       342 f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      +......+-....+...+++|.+|.|++++|..+|.-
T Consensus       131 l~~~~l~~~~~~~~f~~~D~d~dG~i~~~EF~~~~~~  167 (185)
T d2sasa_         131 CKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYR  167 (185)
T ss_dssp             TTSSCCCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHHH
Confidence            9865544333444566788999999999999999854

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.54  E-value=1e-07  Score=91.21  Aligned_cols=117  Identities=22%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCCCCCeeeC---------------------------Ccc--------
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK--VPPVHAPTRLP---------------------------PDF--------   54 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~~~~~~t~~---------------------------~~~--------   54 (507)
                      -.+|+|||..++|||||+|+|++..+.+.  .+.+...+.+.                           .+.        
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            34899999999999999999999886322  11111111110                           000        


Q ss_pred             -------------c----------CCceEEEEEeCCCCccc-------------hhhhHHhhccCCEEEEEE-eCCChhh
Q 010548           55 -------------Y----------PDRVPVTIIDTSSSLEN-------------KGKLNEELKRADAVVLTY-ACNQQST   97 (507)
Q Consensus        55 -------------~----------~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~il~V~-D~~~~~s   97 (507)
                                   .          .....+.++||||....             ..++..|+..++.+++++ +......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                         0          01235789999997532             234557888999866665 4443322


Q ss_pred             HHHHHHhHHHHHHhcCCCCcEEEEEecccCCCCC
Q 010548           98 LSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH  131 (507)
Q Consensus        98 ~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~  131 (507)
                      -.... .+.+.+...  ..++++|.||+|.....
T Consensus       184 ~~~~~-~~~~~~~~~--~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         184 NSDAL-QLAKEVDPE--GKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             TCSHH-HHHHHHCSS--CSSEEEEEECTTSSCSS
T ss_pred             ccHHH-HHHHHhCcC--CCeEEEEEeccccccch
Confidence            22222 255554433  57899999999987653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=4.8e-08  Score=87.75  Aligned_cols=82  Identities=15%  Similarity=0.045  Sum_probs=56.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcC---CCCC---C------CCC-----CccceeEEEEEEcCCCeEEEEEEecCCchh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLER---PFSE---N------YAP-----TTGEQYAVNVVDQPGGNKKTLILQEIPEEG  484 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~---~~~~---~------~~~-----t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~  484 (507)
                      +.++|+++|.+++|||||+++++..   ....   .      ..+     ..+.+-....+..  +..++.++||+|.+.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~--~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET--AKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC--SSCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe--CCeEEEEEeCCCchh
Confidence            3589999999999999999999732   0000   0      000     1222222223333  556788899999999


Q ss_pred             hhhhccchhhcccccEEEEEEeC
Q 010548          485 VKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       485 ~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      |..-.  ...++.||++|||+|+
T Consensus        80 f~~~~--~~~~~~aD~avlVvda  100 (204)
T d2c78a3          80 YIKNM--ITGAAQMDGAILVVSA  100 (204)
T ss_dssp             GHHHH--HHHHTTCSSEEEEEET
T ss_pred             hHHHH--HHHHHHCCEEEEEEEC
Confidence            88655  6788999999999996

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=98.50  E-value=2.5e-07  Score=78.02  Aligned_cols=139  Identities=22%  Similarity=0.285  Sum_probs=105.8

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.++....++++|..+|.+.+|.++.+|+..++... +..++...+..+.+.+.     ...++.|+++.|+........
T Consensus         3 lt~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~~-~~~~~~~~~~~~~~~~d-----~~~~g~i~~~ef~~~~~~~~~   76 (146)
T d1exra_           3 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVD-----ADGNGTIDFPEFLSLMARKMK   76 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHC-----TTCSSSEEHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhc-CCCCCHHHHHHHHHhcC-----CCCCCcccHHHHHHHHHHHhh
Confidence            456667889999999999999999999999988765 55677777777766652     334678999999987543221


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p  349 (507)
                      .                                         ..-.+-++.+|+.+|.|++|.|+..|+..++......+
T Consensus        77 ~-----------------------------------------~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~  115 (146)
T d1exra_          77 E-----------------------------------------QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL  115 (146)
T ss_dssp             H-----------------------------------------HHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCC
T ss_pred             c-----------------------------------------cChHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhcC
Confidence            0                                         11235678999999999999999999999998754333


Q ss_pred             --CCCCccccccccCCCCccchHhHHhh
Q 010548          350 --WDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       350 --~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                        .....+...++.|.+|.|++++|+.+
T Consensus       116 ~~~~~~~i~~~~D~d~dG~i~~~eF~~~  143 (146)
T d1exra_         116 TDDEVDEMIREADIDGDGHINYEEFVRM  143 (146)
T ss_dssp             CHHHHHHHHHHHCSSSSSSBCHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence              22333455678899999999999874

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.50  E-value=1.3e-07  Score=89.28  Aligned_cols=83  Identities=22%  Similarity=0.383  Sum_probs=53.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCC--CCCee-eCCc----------ccCCc---eEEEEEeCCCCccchh
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATESVPEK-VPPV--HAPTR-LPPD----------FYPDR---VPVTIIDTSSSLENKG   74 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~~~~~-~~~~--~~~~t-~~~~----------~~~~~---~~~~i~Dt~G~~~~~~   74 (507)
                      .+||.|||.||||||||||++++.+...+ +|.+  .|..- +.+.          +.+.+   ..+.++|.||......
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            47999999999999999999998764222 3321  11111 0000          01111   3588999999754322


Q ss_pred             -------hhHHhhccCCEEEEEEeCCC
Q 010548           75 -------KLNEELKRADAVVLTYACNQ   94 (507)
Q Consensus        75 -------~~~~~~~~ad~il~V~D~~~   94 (507)
                             ..-..++++|++++|+|+..
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cCCCccHHHHHHHHhccceEEEeeccC
Confidence                   34478899999999998754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.48  E-value=4.3e-08  Score=92.30  Aligned_cols=60  Identities=18%  Similarity=0.247  Sum_probs=38.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCcccCCceEEEEEeCCCCc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSL   70 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~   70 (507)
                      ....++|+|+|.||||||||+|+|.+.+  ....+..|++|.....-..+-.+.++||||.-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~--~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKN--IAKTGDRPGITTSQQWVKVGKELELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSC--CC------------CCEEETTTEEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccc--eEEECCcccccccceEEECCCCeEEecCCCcc
Confidence            3457899999999999999999999987  45566667777544333334568999999964

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=98.46  E-value=2.2e-07  Score=78.13  Aligned_cols=133  Identities=14%  Similarity=0.226  Sum_probs=99.1

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHc
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEK  270 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~  270 (507)
                      .++..+.++++|..+|.+.+|.++..|+....+.. +...+..++..+.+         -.++.|+++.|+.+..-.+  
T Consensus         2 ~~~qi~e~~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~~~el~~~~~---------~~~~~i~~~eF~~~~~~~~--   69 (142)
T d1wdcb_           2 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKELTAMLK---------EAPGPLNFTMFLSIFSDKL--   69 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHH-SSCCCHHHHHHHHT---------TSSSCCCHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCChHHHHHHHHHh-hcCCCHHHHHHHHH---------hccCccccccccccccccc--
Confidence            45667789999999999999999999999888654 67788877766552         1256899999998865321  


Q ss_pred             CCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCC
Q 010548          271 GRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPW  350 (507)
Q Consensus       271 ~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~  350 (507)
                       ..                                      ....+-++..|+.||+|++|.|+.+|+..++.... .|.
T Consensus        70 -~~--------------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g-~~l  109 (142)
T d1wdcb_          70 -SG--------------------------------------TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMG-DNF  109 (142)
T ss_dssp             -CS--------------------------------------CCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSS-SCC
T ss_pred             -cc--------------------------------------cchhhhHHHhhhhhcccCCCcccHHHHHHHHHHcc-ccC
Confidence             00                                      00135678899999999999999999999998763 233


Q ss_pred             CC---CccccccccCCCCccchHhHHhhh
Q 010548          351 DE---APYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       351 ~~---~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      +.   ..+...++.+ +|.|++++|+.+.
T Consensus       110 t~~e~~~l~~~~d~~-~G~I~y~eF~~~l  137 (142)
T d1wdcb_         110 NKDEMRMTFKEAPVE-GGKFDYVKFTAMI  137 (142)
T ss_dssp             CHHHHHHHHHHCCEE-TTEECHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCC-CCEEcHHHHHHHH
Confidence            32   2233445666 5999999998765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.42  E-value=1.1e-07  Score=84.60  Aligned_cols=81  Identities=15%  Similarity=0.032  Sum_probs=56.1

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcC-------C---------CCCCCCCCccceeEEEEEEcCCCeEEEEEEecCCchhhh
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLER-------P---------FSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~-------~---------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~  486 (507)
                      .++|+++|..++|||||++++++.       .         .........+.+.  ....+......+.++||+|.+.|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~--~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCc--ceEEEEeceeeEEeecCcchHHHH
Confidence            489999999999999999999741       0         0011111222222  223333356678889999999887


Q ss_pred             hhccchhhcccccEEEEEEeC
Q 010548          487 KILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       487 ~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .-.  ...++.||++++|+|+
T Consensus        81 ~~~--~~~~~~aD~allVVda   99 (196)
T d1d2ea3          81 KNM--ITGTAPLDGCILVVAA   99 (196)
T ss_dssp             HHH--HHTSSCCSEEEEEEET
T ss_pred             HHH--HHHHhhcCeEEEEEEc
Confidence            654  5677899999999996

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.41  E-value=1.4e-07  Score=90.82  Aligned_cols=84  Identities=17%  Similarity=0.029  Sum_probs=44.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEE----c----------C--------CCeEEEEEEecCC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVD----Q----------P--------GGNKKTLILQEIP  481 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~----~----------~--------~~~~~~~i~Dt~G  481 (507)
                      +||++||.||||||||+|++.+.+-.....|..|.+..+....    .          .        .....++++|++|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999998765444434333222111110    0          0        0124688999999


Q ss_pred             chhhh-----hhccchhhcccccEEEEEEeC
Q 010548          482 EEGVK-----KILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       482 ~~~~~-----~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .-.-.     ........++++|+++.|+|+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~  111 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDA  111 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEET
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecc
Confidence            52211     111124567899999999996

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.2e-07  Score=94.07  Aligned_cols=83  Identities=13%  Similarity=0.071  Sum_probs=51.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCC----CCCccceeEEEEEEcCCCeEEEEEEecCCchhhhhhcc---chhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENY----APTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVKKILS---NKEA  494 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~~  494 (507)
                      ..++|+|+|+||||||||+|+++|.......    ..+.+|+... ..... +...+.+|||+|......-..   ....
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~-~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH-PYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE-EEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee-eeecc-CCCeEEEEeCCCcccccccHHHHHHHhh
Confidence            4699999999999999999999986543222    1222333322 22333 444577899999754321110   1234


Q ss_pred             cccccEEEEEEe
Q 010548          495 LASCDVTIFVYD  506 (507)
Q Consensus       495 ~~~ad~vilv~D  506 (507)
                      +..+|+++++.|
T Consensus       133 ~~~~d~~l~~~~  144 (400)
T d1tq4a_         133 FYEYDFFIIISA  144 (400)
T ss_dssp             GGGCSEEEEEES
T ss_pred             hhcceEEEEecC
Confidence            567899988876

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.37  E-value=2.9e-07  Score=79.05  Aligned_cols=143  Identities=17%  Similarity=0.265  Sum_probs=104.9

Q ss_pred             cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       189 ~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      .+.++....++++|..+|.+.+|.++.+|+...++ .++.......+..+...+...     .++.+++..|+......+
T Consensus        13 ~ls~~~i~el~~~F~~~D~d~~G~Is~~el~~~l~-~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~~e~~~~~~~~~   86 (162)
T d1topa_          13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMR-MLGQNPTKEELDAIIEEVDED-----GSGTIDFEEFLVMMVRQM   86 (162)
T ss_dssp             HSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHH-HTTCCCCHHHHHHHHHHHCTT-----SCCEEEHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHh-ccCCchhHHHHHhhhheeccC-----CCCCeeeehhhhhhhhhh
Confidence            35667778899999999999999999999987666 456777787887776665422     356788888776654333


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC-
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-  347 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~-  347 (507)
                      .....                                      ....+.++..|+.||.|++|.|+..|+..++..... 
T Consensus        87 ~~~~~--------------------------------------~~~~~~~~~aF~~~D~d~~G~Is~~e~~~~l~~~~~~  128 (162)
T d1topa_          87 KEDAK--------------------------------------GKSEEELANCFRIFDKNADGFIDIEELGEILRATGEH  128 (162)
T ss_dssp             HHHHH--------------------------------------HHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCC
T ss_pred             hhhcc--------------------------------------cCcHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhhCCC
Confidence            21111                                      123356788999999999999999999999986422 


Q ss_pred             -CCCCCCccccccccCCCCccchHhHHhh
Q 010548          348 -SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       348 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                       .+.....+...+++|.+|.|++++|+.+
T Consensus       129 ~~~~~~~~l~~~~D~d~dG~Is~~EF~~~  157 (162)
T d1topa_         129 VTEEDIEDLMKDSDKNNDGRIDFDEFLKM  157 (162)
T ss_dssp             CCHHHHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcEEHHHHHHH
Confidence             1122334556678899999999999975

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.37  E-value=3.2e-07  Score=77.32  Aligned_cols=138  Identities=17%  Similarity=0.233  Sum_probs=98.1

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  274 (507)
                      ...++++|..+|.+.+|.++.+|+....+.. +...+..++..+.....   .+...++.|+++.|+.+........   
T Consensus         3 ~eelke~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~~~e~~~~~~~~~---~d~~~~g~i~~~eF~~~~~~~~~~~---   75 (145)
T d2mysc_           3 ADDFKEAFLLFDRTGDAKITASQVGDIARAL-GQNPTNAEINKILGNPS---KEEMNAAAITFEEFLPMLQAAANNK---   75 (145)
T ss_pred             HHHHHHHHHHHcCCCCCeECHHHHHHHHHHh-hhcchhhhhHHHHHHHh---hcccccCccchhHHHHHHhhhhhcc---
Confidence            3467889999999999999999999888664 56677777766665543   3333467899999998754322110   


Q ss_pred             chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCC
Q 010548          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDE  352 (507)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~  352 (507)
                                                          .....+-+++.|+.||.|++|.|+.+|+.+++.....  .+...
T Consensus        76 ------------------------------------~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~  119 (145)
T d2mysc_          76 ------------------------------------DQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEV  119 (145)
T ss_pred             ------------------------------------ccchHHHHHHHHHHhhcCCCCEEcHHHHHHHHHHhCCCCCHHHH
Confidence                                                0112234788999999999999999999999987532  22222


Q ss_pred             CccccccccCCCCccchHhHHhhh
Q 010548          353 APYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      ..+... ..|.+|.|++++|+...
T Consensus       120 ~~l~~~-~~d~dG~I~y~eF~~~l  142 (145)
T d2mysc_         120 EELMKG-QEDSNGCINYEAFVKHI  142 (145)
T ss_pred             HHHHhh-cCCCCCeEEHHHHHHHH
Confidence            333333 56889999999998753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.36  E-value=1.8e-07  Score=88.12  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcCCC------------e---EEEEEEecCCchhhhh-
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGG------------N---KKTLILQEIPEEGVKK-  487 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~------------~---~~~~i~Dt~G~~~~~~-  487 (507)
                      +||.+||-||||||||+|++.+.+......|..|.+.....+.++..            .   ..+.++|.+|.-.-.+ 
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            79999999999999999999988766555555554444444544421            1   2477899999522110 


Q ss_pred             ---hc-cchhhcccccEEEEEEeC
Q 010548          488 ---IL-SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       488 ---~~-~~~~~~~~ad~vilv~D~  507 (507)
                         +. .-...+++||+++.|+|+
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             CCCccHHHHHHHHhccceEEEeec
Confidence               10 114678999999999975

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5e-07  Score=75.50  Aligned_cols=137  Identities=15%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcC
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ++-.+.++++|..+|.+.+|.++.+|+..+.+. ++..++...+..+...+..     ..++.|+++.|+......... 
T Consensus         2 ~~~~~elk~~F~~~D~~~~G~Is~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~~~~~~~~-   74 (141)
T d2obha1           2 EEQKQEIREAFDLFDADGTGTIDVKELKVAMRA-LGFEPKKEEIKKMISEIDK-----EGTGKMNFGDFLTVMTQKMSE-   74 (141)
T ss_dssp             HHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHTT-----TCCSEEEHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEeHHHHHHHHHh-cCCchhHHHHHHHHHhhcc-----CCCCeechHHHHHHHHHHHhh-
Confidence            445678899999999999999999999988775 5788888888888777732     235789999998885533211 


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC--CCCC
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA--PESP  349 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~--p~~p  349 (507)
                                                              ....+-++.+|..+|.+++|.++.+++..++...  +..+
T Consensus        75 ----------------------------------------~~~~~~l~~~f~~~d~~~~G~i~~~el~~~l~~~g~~l~~  114 (141)
T d2obha1          75 ----------------------------------------KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTD  114 (141)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCH
T ss_pred             ----------------------------------------hccHHHHHHHHHHhcccCCCCccHHHHHHHHHHhCCCCCH
Confidence                                                    1123568899999999999999999999999864  3334


Q ss_pred             CCCCccccccccCCCCccchHhHHhh
Q 010548          350 WDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      +....+...+++|.+|.|++++|+.+
T Consensus       115 ~e~~~l~~~~D~d~dG~i~~~EF~~~  140 (141)
T d2obha1         115 EELQEMIDEADRDGDGEVSEQEFLRI  140 (141)
T ss_dssp             HHHHHHHHHHCTTSSSSBCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCEeHHHHHHh
Confidence            44455566788999999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.35  E-value=2.7e-07  Score=87.70  Aligned_cols=84  Identities=13%  Similarity=0.086  Sum_probs=56.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCC-CCCCCCccceeEEEEEEcCCC---------------eEEEEEEecCCchhh
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGG---------------NKKTLILQEIPEEGV  485 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~  485 (507)
                      ..+||.+||.||||||||+|++++.... ....|..|.+.....+.++..               ...+.+.|.+|.-.-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            3489999999999999999999987653 333344444443444544421               136788999974221


Q ss_pred             -------hhhccchhhcccccEEEEEEeC
Q 010548          486 -------KKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       486 -------~~~~~~~~~~~~ad~vilv~D~  507 (507)
                             ..-.  ...+++||+++.|+|+
T Consensus        89 A~~g~GLGn~f--L~~ir~~d~lihVV~~  115 (296)
T d1ni3a1          89 ASTGVGLGNAF--LSHVRAVDAIYQVVRA  115 (296)
T ss_dssp             CCSSSSSCHHH--HHHHTTCSEEEEEEEC
T ss_pred             cccccccHHHH--HHHhhccceeEEEEec
Confidence                   1111  4677999999999985

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.34  E-value=3.5e-07  Score=81.12  Aligned_cols=82  Identities=15%  Similarity=0.044  Sum_probs=42.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCC-CCCCCCccceeEEEEEEcCCCeEEEEEEecCCchh----------hhh-hc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFS-ENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG----------VKK-IL  489 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~-~~  489 (507)
                      ...+|+++|.||||||||+|++++.+.. ..+..+..+.... ..... ...  .+.|+.|...          ... +.
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~-~~~~~-~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN-FYIIN-DEL--HFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEE-EEEET-TTE--EEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecc-ccccc-ccc--eEEEEEeeccccccccccchhhhHHh
Confidence            3458999999999999999999987643 3333333333322 22222 222  2345544211          111 11


Q ss_pred             cchhhcccccEEEEEEeC
Q 010548          490 SNKEALASCDVTIFVYDR  507 (507)
Q Consensus       490 ~~~~~~~~ad~vilv~D~  507 (507)
                      .....+..++++++|+|+
T Consensus        98 ~~~~~~~~~~~vi~viD~  115 (195)
T d1svia_          98 TYITTREELKAVVQIVDL  115 (195)
T ss_dssp             HHHHHCTTEEEEEEEEET
T ss_pred             hhhccccchhhhhhhhhc
Confidence            113455678999999985

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=3e-08  Score=84.00  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=99.7

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~  275 (507)
                      |+++.+|..+|.+.+|.++.+|+..+.+.+ +..++.++++.+.....    +.-.++.++++.|+.++.........  
T Consensus         2 ~~~k~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~s~~ei~~l~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~~~--   74 (146)
T d1m45a_           2 RANKDIFTLFDKKGQGAIAKDSLGDYLRAI-GYNPTNQLVQDIINADS----SLRDASSLTLDQITGLIEVNEKELDA--   74 (146)
T ss_dssp             CCCTTCHHHHCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHC------CC--CCEEEHHHHHHHHHHTHHHHHG--
T ss_pred             hHHHHHHHHHcCCCcCCCCHHHHHHHHHHc-CCchhHHHHhhhhcccc----ccccccccccchhhhhhhhhcccccc--
Confidence            456789999999999999999999998865 78888888877764322    22234579999999886533211000  


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC---C
Q 010548          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD---E  352 (507)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~---~  352 (507)
                                                        ..+...+-+...|+.||.+++|.|+.+||.+++..... +..   .
T Consensus        75 ----------------------------------~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~g~-~l~~~ei  119 (146)
T d1m45a_          75 ----------------------------------TTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGE-KLTDAEV  119 (146)
T ss_dssp             ----------------------------------GGCCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTT-CCCHHHH
T ss_pred             ----------------------------------cccchHHHHHHHHHhhccccccccchhhhhhhhcccCC-cchHHHH
Confidence                                              00111245888999999999999999999999998633 222   2


Q ss_pred             CccccccccCCCCccchHhHHh
Q 010548          353 APYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~  374 (507)
                      ..+...++.|.+|.|++++|+.
T Consensus       120 ~~l~~~~D~d~dG~I~y~eF~~  141 (146)
T d1m45a_         120 DELLKGVEVDSNGEIDYKKFIE  141 (146)
T ss_dssp             HHHHTTCCCCTTSEEEHHHHHH
T ss_pred             HHHHHHhCCCCCCcEEHHHHHH
Confidence            3456678899999999999975

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.32  E-value=7.6e-07  Score=75.89  Aligned_cols=144  Identities=18%  Similarity=0.259  Sum_probs=104.5

Q ss_pred             hcccHHHHHHHHHHHhhccCCC-CCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHH
Q 010548          188 QTLKPRCVRALKRIFIICDHDM-DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~d~~~-d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~  266 (507)
                      ..+.++-.+.++++|...|.+. +|.++..|+..+.+. ++...+..++..+...+...     ..+.++++.|......
T Consensus         6 ~~Lt~~~~~~l~~~F~~~D~d~~dG~I~~~e~~~~l~~-lg~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   79 (156)
T d1dtla_           6 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRM-LGQNPTPEELQEMIDEVDED-----GSGTVDFDEFLVMMVR   79 (156)
T ss_dssp             GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHH-TTCCCCHHHHHHHHHHHCTT-----SSSSBCHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHcCCCCCCeECHHHHHHHHHH-cCCCCCHHHHHHHHHHhhcc-----CCCccchhhhhhhhhh
Confidence            4566777888999999999985 899999999988876 47788888888777665432     3457777777755332


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC
Q 010548          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (507)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p  346 (507)
                      .+....                                      ...-.+-|+..|+.||.|++|.|+.+|+.+++....
T Consensus        80 ~~~~~~--------------------------------------~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~~~~~~  121 (156)
T d1dtla_          80 SMKDDS--------------------------------------KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATG  121 (156)
T ss_dssp             HHC-------------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC-
T ss_pred             cccccc--------------------------------------cccHHHHHHHHHHHhCcCCCCcCcHHHHHHHHhhcC
Confidence            221100                                      011235688999999999999999999999998753


Q ss_pred             C--CCCCCCccccccccCCCCccchHhHHhh
Q 010548          347 E--SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       347 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .  .+.....+...+++|.+|.|++++|+.+
T Consensus       122 ~~ls~~e~~~i~~~~D~d~dG~I~~~eF~~~  152 (156)
T d1dtla_         122 ETITEDDIEELMKDGDKNNDGRIDYDEFLEF  152 (156)
T ss_dssp             -CCCHHHHHHHHHHHCTTSSSEEEHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            2  2222344566778899999999999863

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.31  E-value=1.8e-06  Score=76.52  Aligned_cols=85  Identities=12%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCCCCC-----CCccceeEEEEEEc-------------------CCCeEEEEE
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYA-----PTTGEQYAVNVVDQ-------------------PGGNKKTLI  476 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~-----~t~~~~~~~~~~~~-------------------~~~~~~~~i  476 (507)
                      +..++|+++|..++|||||++++++........     .|....+.......                   ..+..++.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            356899999999999999999998743322111     11111111100000                   002345788


Q ss_pred             EecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          477 LQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       477 ~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      +||+|...|....  ...+..+|++++|+|+
T Consensus        83 iDtPGh~~f~~~~--~~~~~~~d~~ilvvda  111 (195)
T d1kk1a3          83 IDAPGHEALMTTM--LAGASLMDGAILVIAA  111 (195)
T ss_dssp             EECSSHHHHHHHH--HHCGGGCSEEEEEEET
T ss_pred             eccchhhhhhHHh--hcccccccccccccch
Confidence            9999999888665  5667889999999985

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=98.31  E-value=2.1e-07  Score=81.90  Aligned_cols=154  Identities=13%  Similarity=0.094  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC--CCCHHHHHHHHHHHHhh---ccCCccCCCcchhhHHHHHHH
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNA--PLQPAEIVGVKRVVQEK---QHDGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~--~l~~~~~~~l~~~i~~~---~~~~~~~~~~~~~~f~~l~~~  266 (507)
                      +...+.++++|..+|.+.+|.++..|+..........  ...+...+ +.+.+.+.   .........++..+|+.+...
T Consensus         8 p~~~~~~k~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (187)
T d1uhka1           8 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAK-RHKDAVEAFFGGAGMKYGVETDWPAYIEGWKK   86 (187)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHhccCccHHH-HHHHHHHhhhhcccccccccccHHHHHHHHHH
Confidence            4445678999999999999999999998877653322  22222222 22222222   223445667888999887665


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC
Q 010548          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (507)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p  346 (507)
                      .......    ...                           ......-.++++.+|+.+|+|++|.|+.+|+.+++....
T Consensus        87 ~~~~~~~----~~~---------------------------~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g  135 (187)
T d1uhka1          87 LATDELE----KYA---------------------------KNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAG  135 (187)
T ss_dssp             HHHHHHH----HHH---------------------------TTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHT
T ss_pred             HHHHHHH----hhh---------------------------hhhHHHHHHHHHHHHHHHccCCCcccchHHHHHHHHHhC
Confidence            5432111    000                           011223456789999999999999999999999998643


Q ss_pred             --CCCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          347 --ESPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       347 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                        ..+.....+...+++|.+|.|++++|+.+|.
T Consensus       136 ~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~  168 (187)
T d1uhka1         136 IIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL  168 (187)
T ss_dssp             SCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence              2333344556778899999999999998763

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=5.2e-07  Score=79.17  Aligned_cols=127  Identities=19%  Similarity=0.281  Sum_probs=100.7

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~  275 (507)
                      ..|..+|..+|.+.+|.++.+|+...++.+...+.+...+..+...+...     .++.|+++.|+.+++..        
T Consensus        19 ~~L~~iF~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d-----~~g~i~~~EFl~~~~~~--------   85 (181)
T d1hqva_          19 SFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRE-----NKAGVNFSEFTGVWKYI--------   85 (181)
T ss_dssp             HHHHHHHHHHCTTCCSSBCHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCS-----SSSSBCHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCcccHHHHHHHhhccccc-----cccchhhhHHHhhhhhc--------
Confidence            45889999999999999999999999998888888888888887765432     36789999999986522        


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCC
Q 010548          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEA  353 (507)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~  353 (507)
                                                              +-++..|+.||.+++|.|+.+|+..++.......  +...
T Consensus        86 ----------------------------------------~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~l~~e~~~  125 (181)
T d1hqva_          86 ----------------------------------------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHD  125 (181)
T ss_dssp             ----------------------------------------HHHHHHHHHHCTTCCSSBCHHHHHHHHHHHTBCCCHHHHH
T ss_pred             ----------------------------------------cccccccccccccccchhhhHHHHHHHHHcCCcchhHHHH
Confidence                                                    2467889999999999999999999998753321  2223


Q ss_pred             ccccccccCCCCccchHhHHhh
Q 010548          354 PYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+...++.+.+|.|++++|+..
T Consensus       126 ~~~~~~d~~~dg~Is~~eF~~~  147 (181)
T d1hqva_         126 ILIRKFDRQGRGQIAFDDFIQG  147 (181)
T ss_dssp             HHHHHHCSSCSSCBCHHHHHHH
T ss_pred             HHHHHhCCCCCCcCcHHHHHHH
Confidence            3445567789999999999753

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=3.6e-07  Score=77.10  Aligned_cols=138  Identities=19%  Similarity=0.328  Sum_probs=100.6

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      +.++-...++.+|..+|.+.+|.++.+|+..+... .+...+...+..+.....   .+  ..+.++++.|+....... 
T Consensus         4 ls~~~i~~l~~~F~~~D~d~~G~i~~~e~~~~l~~-~g~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~-   76 (146)
T d1lkja_           4 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRS-LGLSPSEAEVNDLMNEID---VD--GNHQIEFSEFLALMSRQL-   76 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHHHC---SS--SCCEEEHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh-cCCCCCHHHHHHHHHHhc---cC--CcccccHHHHHHHHHHhh-
Confidence            45666778999999999999999999999988776 466777766655543332   22  246788888888754221 


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--  347 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--  347 (507)
                        ..                                      ..-.+-++..|+.||+|++|.|+.+|+.+++..++.  
T Consensus        77 --~~--------------------------------------~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~  116 (146)
T d1lkja_          77 --KS--------------------------------------NDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKL  116 (146)
T ss_dssp             --CC--------------------------------------CCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHTCSC
T ss_pred             --cc--------------------------------------ccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCcc
Confidence              00                                      012367889999999999999999999999987543  


Q ss_pred             CCCCCCccccccccCCCCccchHhHHhh
Q 010548          348 SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       348 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+-..+.+...++ |.+|.|++++|..+
T Consensus       117 ~~~~~~~~~~~~d-d~dG~I~~~eF~~~  143 (146)
T d1lkja_         117 TDAEVDDMLREVS-DGSGEINIQQFAAL  143 (146)
T ss_dssp             CHHHHHHHHHHHC-CSSSEEEHHHHHHH
T ss_pred             cHHHHHHHHHhcc-CCCCeEeHHHHHHH
Confidence            2222344555666 89999999999753

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=98.28  E-value=6.4e-07  Score=77.53  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHh---cCCCCCHHHHHHHHHHHHhhccC------CccCCCcchhhHHHHH
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKC---FNAPLQPAEIVGVKRVVQEKQHD------GVNDLGLTLSGFLFLH  264 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~---~~~~l~~~~~~~l~~~i~~~~~~------~~~~~~~~~~~f~~l~  264 (507)
                      ..+.|+++|..+|.+.+|.++.+|+..+..+.   .+......++..+........+.      -..++.++...++...
T Consensus         5 ~~~~l~~~F~~~D~d~dG~Is~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   84 (176)
T d1nyaa_           5 ASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVT   84 (176)
T ss_dssp             HHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence            34568999999999999999999998887653   34455555666655544433221      1124567777777665


Q ss_pred             HHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc
Q 010548          265 ALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (507)
Q Consensus       265 ~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~  344 (507)
                      ........                                  ...+...-.+.+..+|..||.|+||.|+.+|+..++..
T Consensus        85 ~~~~~~~~----------------------------------~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~~~~  130 (176)
T d1nyaa_          85 ENLIFEQG----------------------------------EASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTA  130 (176)
T ss_dssp             HHHHSSSC----------------------------------HHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHH
T ss_pred             hhhhhhhh----------------------------------hhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHHHHHh
Confidence            54332111                                  11223344578899999999999999999999999987


Q ss_pred             CCCCCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          345 APESPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       345 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .+..+.....+...+++|.+|.|++++|+..+.
T Consensus       131 ~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~  163 (176)
T d1nyaa_         131 LGMSKAEAAEAFNQVDTNGNGELSLDELLTAVR  163 (176)
T ss_dssp             TTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHS
T ss_pred             cCCcHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence            765554444455667899999999999998654

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=98.27  E-value=3.9e-07  Score=80.34  Aligned_cols=164  Identities=14%  Similarity=0.117  Sum_probs=103.3

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhH----hcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVK----CFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~----~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~  266 (507)
                      .++..+.++.+|..+|.+.+|.++.+|+......    ..+......+...+..............+.++++.|+.++..
T Consensus         9 ~~~~i~r~k~~F~~~D~d~dG~I~~~E~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~   88 (189)
T d1qv0a_           9 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQ   88 (189)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhccccCCCceehHHHHHHHHH
Confidence            3566778899999999999999999999877654    334443444443333333222223334668889998888765


Q ss_pred             HHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC
Q 010548          267 FIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (507)
Q Consensus       267 ~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p  346 (507)
                      .......       +...                        .....-.+.+..+|+.+|.|++|.|+.+|+..++....
T Consensus        89 ~~~~~~~-------~~~~------------------------~~~~~~~~~~~~~F~~~D~d~~G~is~~E~~~~l~~~g  137 (189)
T d1qv0a_          89 LATSELK-------KWAR------------------------NEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG  137 (189)
T ss_dssp             HHHHHHH-------HHHT------------------------TCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHHS
T ss_pred             HHHHhhh-------cccc------------------------ccHHHHHHHHHHHHHHHccCCCCcccchhhHHHHHhcC
Confidence            4432211       0000                        11123346788999999999999999999999988642


Q ss_pred             C-CCC-CCCccccccccCCCCccchHhHHhhhh-hhhhcCHH
Q 010548          347 E-SPW-DEAPYKDAAETTALGNLTLKGFVSKWA-LMTLLDPR  385 (507)
Q Consensus       347 ~-~p~-~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~d~~  385 (507)
                      . .+. ....+...++.|.+|.|++++|+.++. +....+|.
T Consensus       138 ~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~~~~~~~d~~  179 (189)
T d1qv0a_         138 ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTLDPE  179 (189)
T ss_dssp             SCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHHHTTCCGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhCCCCCCC
Confidence            2 221 123345667899999999999988765 23344443

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=98.21  E-value=3.2e-07  Score=78.03  Aligned_cols=135  Identities=16%  Similarity=0.248  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhhcc--CCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          192 PRCVRALKRIFIICD--HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d--~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      ++-.+.++++|..+|  .+.+|.++..|++..++. ++...+..++..+.    ...  ...++.|+++.|+.++..+..
T Consensus         3 ~eqi~~l~~~F~~fD~~~~~dG~I~~~el~~~l~~-lG~~~t~~e~~~~~----~~~--~~~~~~i~~~eFl~~~~~~~~   75 (152)
T d1wdcc_           3 QDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRC-LGINPRNEDVFAVG----GTH--KMGEKSLPFEEFLPAYEGLMD   75 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHH-TTCCCCHHHHHHTT----CCS--STTSCEECHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHH-hccCccHhhhhhhh----hhh--ccccccccccccccccccccc
Confidence            445567888999988  478999999999988876 46667887776542    222  223678999999998654331


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p  349 (507)
                      ..+                                        ...+-|...|+.||.|++|.|+.+||..++.... .+
T Consensus        76 ~~~----------------------------------------~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~~g-~~  114 (152)
T d1wdcc_          76 CEQ----------------------------------------GTFADYMEAFKTFDREGQGFISGAELRHVLTALG-ER  114 (152)
T ss_dssp             SCC----------------------------------------CCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSS-SC
T ss_pred             cch----------------------------------------hHHHhhhhhhhccccccCccchHHHHHHHHHHcC-CC
Confidence            111                                        1134588999999999999999999999998753 23


Q ss_pred             CCC---Ccccccccc--CCCCccchHhHHh
Q 010548          350 WDE---APYKDAAET--TALGNLTLKGFVS  374 (507)
Q Consensus       350 ~~~---~~~~~~~~~--~~~~~~~~~~~~~  374 (507)
                      ...   ..+...++.  +.+|.|++++|+.
T Consensus       115 ls~~e~~~l~~~~d~~~d~~G~I~y~eF~~  144 (152)
T d1wdcc_         115 LSDEDVDEIIKLTDLQEDLEGNVKYEDFVK  144 (152)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTSEEEHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCCCCEEEHHHHHH
Confidence            332   223333343  4568999999985

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=98.19  E-value=1.1e-06  Score=72.44  Aligned_cols=131  Identities=19%  Similarity=0.179  Sum_probs=95.4

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w  277 (507)
                      .+.+|..+|.+.+|.++.+|+..+.... +...+..+++.+...+.   .  ..++.|+++.|+.+...           
T Consensus         2 ae~~F~~~D~d~dG~is~~E~~~~l~~~-~~~~~~~~~~~~~~~~D---~--~~~g~i~~~Ef~~~~~~-----------   64 (134)
T d1jfja_           2 AEALFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLLQLIFKSID---A--DGNGEIDQNEFAKFYGS-----------   64 (134)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHTT-CCSSHHHHHHHHHHHHC---S--SCCSEEEHHHHHHHTTC-----------
T ss_pred             HHHHHHHHcCCCcCCCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhh---h--ccccccccccccccccc-----------
Confidence            3578999999999999999999888654 55666667766665552   2  24679999999986310           


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCcccc
Q 010548          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKD  357 (507)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~  357 (507)
                                            .      ...-.....+.++.+|+.+|.+++|.|+.+|+..++...+.  -.......
T Consensus        65 ----------------------~------~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~~~~~~~--~~~~~~~~  114 (134)
T d1jfja_          65 ----------------------I------QGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI--EKVAEQVM  114 (134)
T ss_dssp             ----------------------S------SCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTTTTC--HHHHHHHH
T ss_pred             ----------------------c------cccccccccccccccccccccccCCcccHHHHHHHHHhcCc--HHHHHHHH
Confidence                                  0      00123345678899999999999999999999999875432  11122334


Q ss_pred             ccccCCCCccchHhHHhh
Q 010548          358 AAETTALGNLTLKGFVSK  375 (507)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~  375 (507)
                      .++.|.+|.|++++|+.+
T Consensus       115 ~~D~d~dG~is~~EF~~~  132 (134)
T d1jfja_         115 KADANGDGYITLEEFLEF  132 (134)
T ss_dssp             HHHCSSSSEEEHHHHHHH
T ss_pred             HHCCCCCCCCCHHHHHHH
Confidence            567899999999999863

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.16  E-value=1.6e-06  Score=72.82  Aligned_cols=133  Identities=19%  Similarity=0.301  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCC
Q 010548          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGR  272 (507)
Q Consensus       193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~  272 (507)
                      +....++.+|..+|.+.+|.++.+++....+.+...+...+.+..+   ...      .++.|+++.|+.+......   
T Consensus         4 ~qi~el~e~F~~~D~~~~G~I~~~e~~~~l~~lg~~~~~~~~~~~~---~~~------~~g~i~~~eF~~~~~~~~~---   71 (145)
T d2mysb_           4 TEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAM---IKE------ASGPINFTVFLTMFGEKLK---   71 (145)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCcchHHHHHHH---HHh------ccCceeechhhhhhhhccc---
Confidence            3456788899999999999999999999987764444444333322   211      2457899999987431110   


Q ss_pred             ccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCC
Q 010548          273 LETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPW  350 (507)
Q Consensus       273 ~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~  350 (507)
                                                            .....+.++..|+.||++++|.|+.+|+..++....  ..+-
T Consensus        72 --------------------------------------~~~~~~~l~~aF~~fD~~~~g~I~~~el~~~l~~~g~~ls~~  113 (145)
T d2mysb_          72 --------------------------------------GADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPE  113 (145)
T ss_pred             --------------------------------------ccchHHHHHHHHHhhhhcccchhhHHHHHHHHHHcCCCCCHH
Confidence                                                  011245789999999999999999999999998753  2222


Q ss_pred             CCCccccccccCCCCccchHhHHhh
Q 010548          351 DEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      ....+...++.|.+|.|++.+|+..
T Consensus       114 e~~~~~~~~d~d~dg~I~y~eF~~~  138 (145)
T d2mysb_         114 EIKNMWAAFPPDVAGNVDYKNICYV  138 (145)
T ss_pred             HHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            2344556678899999999998763

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.5e-07  Score=76.43  Aligned_cols=140  Identities=17%  Similarity=0.209  Sum_probs=99.1

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIE  269 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~  269 (507)
                      ..++-.+.|.++|..+|.+.+|.++.+|+.........     ..++.+.+.+.     ...++.|+++.|+.....+. 
T Consensus        10 ft~eei~~l~~~F~~~D~d~~G~I~~~E~~~~~~~~~~-----~~~~~l~~~~d-----~~~~g~i~~~EFl~~~~~~~-   78 (165)
T d1auib_          10 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQN-----PLVQRVIDIFD-----TDGNGEVDFKEFIEGVSQFS-   78 (165)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCSEECHHHHTTSHHHHTC-----TTHHHHHHHHC-----TTCSSSEEHHHHHHHHGGGC-
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHhhhccCC-----HHHHHHHHHHc-----cccchhhhhhhhhhhccccc-
Confidence            45666778999999999999999999998755443322     22444444442     23467899999998743110 


Q ss_pred             cCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC
Q 010548          270 KGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP  349 (507)
Q Consensus       270 ~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p  349 (507)
                                                              ......+.++..|+.||.|++|.++.+|+.+++....+..
T Consensus        79 ----------------------------------------~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~~~~~  118 (165)
T d1auib_          79 ----------------------------------------VKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNN  118 (165)
T ss_dssp             ----------------------------------------TTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTTS
T ss_pred             ----------------------------------------cchhhHHHHHHHHHHhcccccccccHHHHHHHHHHhcccc
Confidence                                                    1112457789999999999999999999999997654433


Q ss_pred             CCC-------CccccccccCCCCccchHhHHhhhhhhh
Q 010548          350 WDE-------APYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       350 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      ...       ..+...++.|.+|.|++++|++..+-+.
T Consensus       119 ~~~~~~~~~~~~~~~~~D~~~dG~Is~~EF~~i~~~~~  156 (165)
T d1auib_         119 LKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLD  156 (165)
T ss_dssp             SCHHHHHHHHHHHHHHHCTTSSSSEEHHHHHHHHGGGC
T ss_pred             CchHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHHhcCC
Confidence            221       1234456789999999999998665443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.15  E-value=1.8e-06  Score=78.01  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=55.6

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCC----------CCC-----------------------CccceeEEEEEEcC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN----------YAP-----------------------TTGEQYAVNVVDQP  468 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~----------~~~-----------------------t~~~~~~~~~~~~~  468 (507)
                      ..++|+++|-.++|||||+.+++.......          ...                       ..+.......... 
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-   86 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-   86 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec-
Confidence            568999999999999999999974221110          000                       1111121222222 


Q ss_pred             CCeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          469 GGNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       469 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                       ...++.++||+|.+.|-.-.  ......+|++++|+|+
T Consensus        87 -~~~~~~iiD~PGH~dfv~~~--~~g~~~aD~ailVvda  122 (222)
T d1zunb3          87 -AKRKFIIADTPGHEQYTRNM--ATGASTCDLAIILVDA  122 (222)
T ss_dssp             -SSEEEEEEECCCSGGGHHHH--HHHHTTCSEEEEEEET
T ss_pred             -cceEEEEEeccchhhhhhhh--ccccccCceEEEEecc
Confidence             45678899999999987655  5677899999999996

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.14  E-value=1.8e-06  Score=77.24  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=52.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCCCC--------CCccceeEEEEEE---------------------cCCCeE
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYA--------PTTGEQYAVNVVD---------------------QPGGNK  472 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~--------~t~~~~~~~~~~~---------------------~~~~~~  472 (507)
                      +.++|+++|..++|||||++++++..-.....        ..+.+........                     ......
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            45899999999999999999998632211110        0011101000000                     000123


Q ss_pred             EEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          473 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       473 ~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ++.++||+|...|....  ...+..||++++|+|+
T Consensus        87 ~~~iiD~PGH~df~~~~--~~~~~~ad~ailvVda  119 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATM--LSGAALMDGAILVVAA  119 (205)
T ss_dssp             EEEEEECSCHHHHHHHH--HHTSSCCSEEEEEEET
T ss_pred             EEEEeccchHHHHHhhh--hcceeccccccccccc
Confidence            67899999999887654  5677889999999996

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.13  E-value=1.1e-06  Score=73.56  Aligned_cols=128  Identities=16%  Similarity=0.184  Sum_probs=92.4

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w  277 (507)
                      .+++|..+|.+.+|.++..|+...++. ++...+.+++..+.   .      -.++.|+++.|+.+.....         
T Consensus         7 fke~F~~~D~d~dG~I~~~el~~~l~~-lg~~~t~~ei~~~~---~------~~~~~i~~~eF~~~~~~~~---------   67 (140)
T d1ggwa_           7 YKQAFSLFDRHGTGRIPKTSIGDLLRA-CGQNPTLAEITEIE---S------TLPAEVDMEQFLQVLNRPN---------   67 (140)
T ss_dssp             THHHHHHTCSSSSSEECHHHHHHHHHH-TSCCCCHHHHHHHH---T------TSCSSEEHHHHHHHHCTTS---------
T ss_pred             HHHHHHHHCCCCCCeECHHHHHHHHHH-HHhhhHHHhhhhhh---c------cccccccchhhhhhhhhhh---------
Confidence            467899999999999999999988865 56778887776542   1      1257899999998743000         


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC--CCCCCCCCcc
Q 010548          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA--PESPWDEAPY  355 (507)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~--p~~p~~~~~~  355 (507)
                            .               ...         +...+-|+..|+.||.|++|.|+.+||..++...  |..+-....+
T Consensus        68 ------~---------------~~~---------~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~lt~~e~~~l  117 (140)
T d1ggwa_          68 ------G---------------FDM---------PGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDEL  117 (140)
T ss_dssp             ------S---------------SSS---------SCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred             ------h---------------cch---------hhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHcCCCCCHHHHHHH
Confidence                  0               000         0113458899999999999999999999999864  3333223344


Q ss_pred             ccccccCCCCccchHhHHhh
Q 010548          356 KDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~  375 (507)
                      ...++.+ +|.|++++|+.+
T Consensus       118 ~~~~d~~-dG~I~y~eF~~~  136 (140)
T d1ggwa_         118 LKGVPVK-DGMVNYHDFVQM  136 (140)
T ss_dssp             HHHTTCS-SCCSTTTHHHHH
T ss_pred             HHhhCCC-CCEEeHHHHHHH
Confidence            5556777 899999999864

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=98.12  E-value=3.4e-06  Score=73.83  Aligned_cols=126  Identities=21%  Similarity=0.217  Sum_probs=100.2

Q ss_pred             HHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccch
Q 010548          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETT  276 (507)
Q Consensus       197 ~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~  276 (507)
                      .+++.|..+|.+.+|.++.+|+...++. .+..++..+++.+...+..     ..++.|+++.|+..+..          
T Consensus        19 ~l~~~F~~~D~d~dG~Is~~El~~~l~~-l~~~~s~~~~~~l~~~~d~-----d~~~~i~~~ef~~~~~~----------   82 (182)
T d1y1xa_          19 ELMEWFRAVDTDGSGAISVPELNAALSS-AGVPFSLATTEKLLHMYDK-----NHSGEITFDEFKDLHHF----------   82 (182)
T ss_dssp             CHHHHHHHHCTTCSSSBCHHHHHHHHCB-TTBCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHHH----------
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHHH-hcccCchhhhhhhhccccc-----ccccccccccccccccc----------
Confidence            4778899999999999999999998765 5678899888888776643     24668999999876432          


Q ss_pred             hHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCc
Q 010548          277 WAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAP  354 (507)
Q Consensus       277 w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~  354 (507)
                                                            .+.+...|+.+|.+++|.|+.+|+.+++.....  .++....
T Consensus        83 --------------------------------------~~~~~~~F~~~D~~~~g~I~~~el~~~l~~~g~~ls~~e~~~  124 (182)
T d1y1xa_          83 --------------------------------------ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQA  124 (182)
T ss_dssp             --------------------------------------HHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHH
T ss_pred             --------------------------------------ccccccchhccccccchhhhhHHHHHHHHHhCCchhHHHHHH
Confidence                                                  235678899999999999999999999987522  3344455


Q ss_pred             cccccccCCCCccchHhHHhhh
Q 010548          355 YKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      +...++.|.+|.|++++|+.+=
T Consensus       125 i~~~~d~~~dg~I~~~eF~~~~  146 (182)
T d1y1xa_         125 LMRKFDRQRRGSLGFDDYVELS  146 (182)
T ss_dssp             HHHHHCTTCSSSBCHHHHHHHH
T ss_pred             HHhhcccCCCCCcCHHHHHHHH
Confidence            5667889999999999999863

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.2e-06  Score=76.42  Aligned_cols=49  Identities=22%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             cCceEEEEEecCCCCchHHHHHHHhcCCCCCCCCCCccceeEEEEEEcC
Q 010548          420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQP  468 (507)
Q Consensus       420 ~~~~~kv~ivG~~~vGKSsll~~l~~~~~~~~~~~t~~~~~~~~~~~~~  468 (507)
                      ....+||+++|.||||||||+|++++.+........+++..........
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA   61 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecc
Confidence            4456899999999999999999999988766655544444433333333

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=98.03  E-value=1.4e-06  Score=69.48  Aligned_cols=60  Identities=17%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCC---CCccccccccCCCCccchHhHHhh
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWD---EAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      +-++++|+.||+|++|.|+.+||..++....  +.+..   ...+...++.|.+|.|++++|..+
T Consensus        41 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~ls~~ev~~~~~~~D~d~dG~I~~~EF~~~  105 (109)
T d1pvaa_          41 NDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL  105 (109)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred             HHHHHHhhCccCCCcCeEcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHCCCCcCcEeHHHHHHH
Confidence            4578999999999999999999999987532  22222   234566678999999999999874

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=98.02  E-value=1.5e-06  Score=76.09  Aligned_cols=135  Identities=16%  Similarity=0.198  Sum_probs=98.7

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  274 (507)
                      .+.|+++|..+|.+.+|.++.+|+..+.+.. +...+...++.+...+...     .++.|+++.|+.+........+  
T Consensus         9 i~~l~~~F~~~D~d~dG~Is~~e~~~~l~~l-~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~~~~~--   80 (182)
T d1s6ia_           9 IGGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADID-----KSGTIDYGEFIAATVHLNKLER--   80 (182)
T ss_dssp             TCSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCTT-----CSSEECHHHHHHHHTTSSSSCC--
T ss_pred             HHHHHHHHHHHcCCCcCCCCHHHHHHHHHHc-CCccccccchhhhhhhhcc-----ccccchHHHHHHHHHhhccccc--
Confidence            3457899999999999999999999988775 5666776766665555322     3568899999876321110000  


Q ss_pred             chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCc
Q 010548          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAP  354 (507)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~  354 (507)
                                                              .+-++..|+.+|.+++|.++.+++.+++.....+.-....
T Consensus        81 ----------------------------------------~e~l~~aF~~~D~d~~G~i~~~el~~~l~~~gl~~~ev~~  120 (182)
T d1s6ia_          81 ----------------------------------------EENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDD  120 (182)
T ss_dssp             ----------------------------------------CCSTHHHHHHTTTTCSSEEEHHHHHHTTTTTTCCTTHHHH
T ss_pred             ----------------------------------------HHHHHHHHHHHhhcCCCccchhhhhhhhhhcCccHHHHHH
Confidence                                                    0135678999999999999999999999876533322344


Q ss_pred             cccccccCCCCccchHhHHhhhh
Q 010548          355 YKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      +...++.|.+|.|++++|+.+..
T Consensus       121 ~f~~~D~d~DG~Is~~EF~~~m~  143 (182)
T d1s6ia_         121 MIKEIDQDNDGQIDYGEFAAMMR  143 (182)
T ss_dssp             HHHHHCSSSSSEEETTHHHHTTS
T ss_pred             HHHHhhcCCCCeEeHHHHHHHHH
Confidence            55667889999999999998665

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.5e-06  Score=71.19  Aligned_cols=120  Identities=16%  Similarity=0.120  Sum_probs=83.0

Q ss_pred             HHHhhccCCCCCccChhhhHHHHhHhcCC----CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548          200 RIFIICDHDMDGALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (507)
Q Consensus       200 ~~~~~~d~~~d~~l~~~el~~~~~~~~~~----~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~  275 (507)
                      .+|... .+.+|.++.+||..++..+...    +++.+.++.+...+     +...++.|+++.|+.++..         
T Consensus         4 ~~F~~~-a~~dG~I~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~-----D~~~~G~i~~~EF~~l~~~---------   68 (165)
T d1k94a_           4 TYFSAV-AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAML-----DRDHTGKMGFNAFKELWAA---------   68 (165)
T ss_dssp             HHHHHH-HGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHH-----CTTCSSCBCHHHHHHHHHH---------
T ss_pred             HHHHHh-cCCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHh-----CCCCCCcCcHHHHHHHhhc---------
Confidence            344444 4569999999999999876433    23344444444433     2234779999999988542         


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC--CC
Q 010548          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD--EA  353 (507)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~--~~  353 (507)
                                                             .+.++.+|+.||+|++|.++.+||..++...+.....  .+
T Consensus        69 ---------------------------------------~~~~~~~F~~fD~d~sG~I~~~El~~~l~~~G~~l~~~~~~  109 (165)
T d1k94a_          69 ---------------------------------------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLT  109 (165)
T ss_dssp             ---------------------------------------HHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHH
T ss_pred             ---------------------------------------cchhHHHHHHhCCCCCCeEcHHHHHHHHHHhhhcCCHHHHH
Confidence                                                   1356789999999999999999999999987553321  22


Q ss_pred             ccccccccCCCCccchHhHHhh
Q 010548          354 PYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+...+  +.+|.|++++|+++
T Consensus       110 ~l~~~~--d~~g~i~~~eFi~~  129 (165)
T d1k94a_         110 TIVKRY--SKNGRIFFDDYVAC  129 (165)
T ss_dssp             HHHHHH--CBTTBCBHHHHHHH
T ss_pred             HHHHHc--CCCCcCcHHHHHHH
Confidence            233333  45799999999874

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=97.91  E-value=2.2e-06  Score=75.42  Aligned_cols=126  Identities=16%  Similarity=0.097  Sum_probs=79.2

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-------CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNA-------PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-------~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      .+.++++|...|.+ +|.++.+||...+.++...       +...+.++.+   +...-  ...++.|+++.|..++.. 
T Consensus        19 ~~~~r~~F~~~d~~-dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~l---i~~~D--~d~~G~i~~~EF~~l~~~-   91 (188)
T d1qxpa2          19 DDNFKTLFSKLAGD-DMEISVKELQTILNRIISKHKDLRTNGFSLESCRSM---VNLMD--RDGNGKLGLVEFNILWNR-   91 (188)
T ss_dssp             --------CCCCCS-SSSCCCSCTTTTTCC---------CCCCCHHHHHHH---HHHHC--C--CCCCCSSSHHHHHHH-
T ss_pred             HHHHHHHHHHHcCC-CCEECHHHHHHHHHHhCccccccccccCCHHHHHHH---HHHhc--CCCCCcccHHHHHHHHhh-
Confidence            34578889888854 8999999998776664333       2333444444   44332  234778999999988542 


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                                                                     .+.++..|+.||+|++|.|+..|+..++.....
T Consensus        92 -----------------------------------------------~~~~~~~F~~~D~d~sG~i~~~El~~~l~~~g~  124 (188)
T d1qxpa2          92 -----------------------------------------------IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGF  124 (188)
T ss_dssp             -----------------------------------------------HHHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTE
T ss_pred             -----------------------------------------------hHHHHHHHHHhCCCCCCEECHHHHHHHHHHhhh
Confidence                                                           235678999999999999999999999987543


Q ss_pred             CC--CCCCccccccccCCCCccchHhHHhh
Q 010548          348 SP--WDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       348 ~p--~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+  -....+.. ...+.+|.|++++|+++
T Consensus       125 ~~~~~~~~~l~~-~~~~~dg~i~f~eFi~~  153 (188)
T d1qxpa2         125 KLPCQLHQVIVA-RFADDELIIDFDNFVRC  153 (188)
T ss_dssp             ECCHHHHHHHHH-HTSCSSSBCCHHHHHHH
T ss_pred             cCCHHHHHHHHH-HhcCCCCcCCHHHHHHH
Confidence            22  11111222 23588999999999884

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=97.89  E-value=3.1e-06  Score=74.33  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=89.8

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCC-------CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNA-------PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~-------~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      ..++++|...+ +.+|.++.+||..++......       .++...+..+...+.   .  ..++.|+++.|..++..  
T Consensus        18 ~~~r~~F~~~d-~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D---~--d~~G~I~~~EF~~~~~~--   89 (186)
T d1df0a1          18 DGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLD---E--DGSGKLGLKEFYILWTK--   89 (186)
T ss_dssp             HHHHHHHHHHH-GGGTCEEHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHC---C--SSSSEECHHHHHHHHHH--
T ss_pred             HHHHHHHHHHc-CCCCeEcHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHc---C--CCCCcccHHHHHHHHHh--
Confidence            44677787776 789999999999998875433       344444544444432   2  23678999999988542  


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC-
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE-  347 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~-  347 (507)
                                                                    .+-++..|+.||+|++|.|+.+||..++..... 
T Consensus        90 ----------------------------------------------~~~~~~~F~~~D~d~sG~I~~~El~~~l~~~g~~  123 (186)
T d1df0a1          90 ----------------------------------------------IQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFK  123 (186)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHCTTCCSCEEGGGHHHHHHHTTEE
T ss_pred             ----------------------------------------------HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhc
Confidence                                                          234678999999999999999999999987533 


Q ss_pred             -CCCCCCccccccccCCCCccchHhHHhh
Q 010548          348 -SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       348 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                       ++..+..+. ..++|.+|.|++++|+++
T Consensus       124 ~~~~~~~~~~-~~d~d~dg~I~f~eFi~~  151 (186)
T d1df0a1         124 LPCQLHQVIV-ARFADDELIIDFDNFVRC  151 (186)
T ss_dssp             CCHHHHHHHH-HHHCCSTTEECHHHHHHH
T ss_pred             ccHHHHHHHH-HHHcCCCCeEeHHHHHHH
Confidence             222222233 357899999999999984

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=3.9e-06  Score=75.28  Aligned_cols=61  Identities=20%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCC---CCCCeeeCCcccCCceEEEEEeCCCCccch
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATESVPEK--VPP---VHAPTRLPPDFYPDRVPVTIIDTSSSLENK   73 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~~~~~--~~~---~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~   73 (507)
                      -..+++|.+|||||||+|+|.++.....  +..   ...-+|.......-.-.-.++||||..++.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcccccc
Confidence            4689999999999999999987643211  111   111122222221111124799999976543

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=97.86  E-value=1.7e-06  Score=64.96  Aligned_cols=67  Identities=18%  Similarity=0.225  Sum_probs=54.7

Q ss_pred             CHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC-CCCCccccccccCCCCccchHhHHhhhh
Q 010548          311 ASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP-WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       311 s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      |+.-++-|+++|+.||.|+||.|+.+||..++......+ .....+...++.|.+|.|++++|+.++.
T Consensus         1 T~ee~~e~~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~ei~~~~~~~D~d~~G~I~~~EF~~~~~   68 (81)
T d2opoa1           1 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR   68 (81)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence            456677899999999999999999999999998865322 3344456778899999999999998654

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.84  E-value=6.3e-06  Score=71.34  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCC-------CCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAP-------LQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~-------l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      .+.++++|...|.+ +|.++.+||...+.+....+       .+.+.   +...+...-.+  .++.|+++.|++++.. 
T Consensus         3 ~~~~r~~F~~~d~~-dg~I~~~EL~~~L~~~~~~~~~~~~~~~~~~~---~~~l~~~~d~d--~~g~i~~~ef~~~~~~-   75 (173)
T d1alva_           3 VRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDT---CRSMVAVMDSD--TTGKLGFEEFKYLWNN-   75 (173)
T ss_dssp             HHHHHHHHHHHHGG-GTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHH---HHHHHHHHCTT--CSSSBCHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHhCCCcchhhhccCCHHH---HHHHHHHhccC--CCCcccchhhhhhhhh-
Confidence            45678889888855 89999999999988753322       33344   44444433222  3668999999988542 


Q ss_pred             HHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          268 IEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       268 ~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                                                                     .+.++..|+.||.|++|.|+..|+..++.....
T Consensus        76 -----------------------------------------------~~~~~~~f~~~D~d~~G~I~~~el~~~L~~~g~  108 (173)
T d1alva_          76 -----------------------------------------------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGF  108 (173)
T ss_dssp             -----------------------------------------------HHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTC
T ss_pred             -----------------------------------------------hhHHHHHHHHhccCCCCeecHHHHHHHHHHHHH
Confidence                                                           235678899999999999999999999987543


Q ss_pred             CCCC--CCccccccccCCCCccchHhHHhh
Q 010548          348 SPWD--EAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       348 ~p~~--~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      ....  ...+. ....|.+|.|++++|+++
T Consensus       109 ~~~~~~~~~~~-~~d~d~~G~i~~~EF~~~  137 (173)
T d1alva_         109 HLNEHLYSMII-RRYSDEGGNMDFDNFISC  137 (173)
T ss_dssp             CCCHHHHHHHH-HHHTCSSSCBCHHHHHHH
T ss_pred             hhHHHHHHHhh-ccccCCCCeEeHHHHHHH
Confidence            2211  22233 345589999999999885

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.84  E-value=1.8e-05  Score=73.20  Aligned_cols=79  Identities=15%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCCC-----CC-------------CCccceeEEEEEEcCCCeEEEEEEecCCchhhh
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSEN-----YA-------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~~-----~~-------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~  486 (507)
                      +|+++|..++|||||+.+++...-...     ..             ...+..-....+.+  +..++.++||+|...|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~--~~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc--cccceeEEccCchhhhh
Confidence            599999999999999999973211110     00             11122222333444  46678899999999988


Q ss_pred             hhccchhhcccccEEEEEEeC
Q 010548          487 KILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       487 ~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .-.  ...++.+|++++|+|+
T Consensus        82 ~e~--~~al~~~D~avlvvda  100 (267)
T d2dy1a2          82 GEI--RGALEAADAALVAVSA  100 (267)
T ss_dssp             HHH--HHHHHHCSEEEEEEET
T ss_pred             hhh--hhhhcccCceEEEeec
Confidence            655  6788999999999996

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=97.77  E-value=3.5e-06  Score=67.05  Aligned_cols=60  Identities=17%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhcc--CCCCCCC---CCccccccccCCCCccchHhHHhh
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLT--APESPWD---EAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~--~p~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      +-|+.+|+.||+|++|.|+.+||..++..  ..+.+..   ...+...++.|.+|.|++++|+.+
T Consensus        41 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~  105 (109)
T d5pala_          41 AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM  105 (109)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHH
T ss_pred             HHHHHHHhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHHHHHhCCCCCCCEeHHHHHHH
Confidence            46889999999999999999999998764  2333322   344666678999999999999874

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.5e-06  Score=70.03  Aligned_cols=132  Identities=18%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w  277 (507)
                      ++++|...|.+.+|.++..|++.+.+. ++...++.++..+...+.   .....++.++++.|+.+.........     
T Consensus         2 ~ke~F~~~D~d~~G~I~~~el~~~l~~-lg~~~t~~e~~~~~~~~~---~~~~~~~~i~~~ef~~~~~~~~~~~~-----   72 (139)
T d1w7jb1           2 FKEAFELFDRVGDGKILYSQCGDVMRA-LGQNPTNAEVLKVLGNPK---SDELKSRRVDFETFLPMLQAVAKNRG-----   72 (139)
T ss_dssp             HHHHHHHHCCSSSSEEESTTHHHHHHH-TTCCCCHHHHHHHTTCCC---HHHHTTCEEEHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhCCCCCeECHHHHHHHHHH-hccCCCHHHHHHHHHHHh---cccccCCceeeeccchhhHhhhhhcc-----
Confidence            578899999999999999999998875 567888877766654322   11234567999999877553221000     


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCC---Cc
Q 010548          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE---AP  354 (507)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~---~~  354 (507)
                                                        ....+-++..|+.+|.|++|.++.+|+.+++..... +...   +.
T Consensus        73 ----------------------------------~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~-~~~~~e~~~  117 (139)
T d1w7jb1          73 ----------------------------------QGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGE-KMTEEEVET  117 (139)
T ss_dssp             ---------------------------------------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSS-CCCHHHHHH
T ss_pred             ----------------------------------ccHHHHHHHhhhhccCCCCCeEeHHHHHHHHHHhCC-CCCHHHHHH
Confidence                                              001122567899999999999999999999988643 3222   22


Q ss_pred             cccccccCCCCccchHhHHh
Q 010548          355 YKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~  374 (507)
                      +.. ...+.+|.|++++|+.
T Consensus       118 l~~-~~~d~dg~I~~~eF~~  136 (139)
T d1w7jb1         118 VLA-GHEDSNGCINYEAFLK  136 (139)
T ss_dssp             HHT-TCCCTTSEEEHHHHHH
T ss_pred             HHh-hCCCCCCeEeHHHHHH
Confidence            223 3568889999999985

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=8.7e-06  Score=74.30  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=57.4

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCC--------------------CC-----------CCCCCccceeEEEEEEcCCC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPF--------------------SE-----------NYAPTTGEQYAVNVVDQPGG  470 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~--------------------~~-----------~~~~t~~~~~~~~~~~~~~~  470 (507)
                      ..++|+++|-.++|||||+.+++...-                    ..           .-...++.+.....+.+  .
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~   82 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--P   82 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--S
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc--C
Confidence            348999999999999999999963100                    00           00112233333334444  4


Q ss_pred             eEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          471 NKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       471 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..++.|+||+|...|..-.  ....+.+|++|||+|+
T Consensus        83 ~~~i~iiDtPGH~df~~~~--~~g~~~~D~ailvvda  117 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNM--ITGTSQADCAILIIAG  117 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHH--HHSSSCCSEEEEEEEC
T ss_pred             CEEEEEEECCCcHHHHHHH--HHHHHHhCEEEEEEEC
Confidence            5789999999999987655  5677899999999996

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=97.74  E-value=2.7e-06  Score=62.47  Aligned_cols=69  Identities=20%  Similarity=0.411  Sum_probs=56.9

Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      +||+.=+.-|+..|..||.|++|.|+.+|+..++......+  .....+...++.+.+|.|++++|+.++.
T Consensus         1 qLs~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~m~   71 (73)
T d2pq3a1           1 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA   71 (73)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            58888889999999999999999999999999998754332  2234455667889999999999998653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.73  E-value=1.1e-05  Score=73.08  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=53.7

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcCC--CC-----------------------------CCCCCCccceeEEEEEEcCCCe
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLERP--FS-----------------------------ENYAPTTGEQYAVNVVDQPGGN  471 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~  471 (507)
                      .++|+++|--+.|||||+.+++...  ..                             .......+.......+.  .+.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~--~~~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--TKK   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--CSS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEe--cCC
Confidence            5899999999999999999986311  00                             00011111112222222  356


Q ss_pred             EEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       472 ~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ..+.++||+|...|..-.  ....+-||++++|+|+
T Consensus        81 ~~i~iiDtPGH~df~~~~--~~g~~~~D~allVVda  114 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNM--ITGASQADAAILVVSA  114 (224)
T ss_dssp             CEEEECCCSSSTTHHHHH--HHTSSCCSEEEEEEEC
T ss_pred             ceeEEeeCCCcHHHHHHH--HHHHHhhceEEEEEec
Confidence            678899999999998766  5678889999999996

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=0.00011  Score=66.06  Aligned_cols=98  Identities=10%  Similarity=0.067  Sum_probs=52.7

Q ss_pred             eEEEEEeCCCCccchhhhHH--------hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCCC
Q 010548           59 VPVTIIDTSSSLENKGKLNE--------ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD  130 (507)
Q Consensus        59 ~~~~i~Dt~G~~~~~~~~~~--------~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~  130 (507)
                      ....++.+.|..........        ..-..+.++.|+|+............+...++..  +   ++|+||+|+..+
T Consensus        90 ~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A--D---~ivlNK~Dl~~~  164 (222)
T d1nija1          90 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA--D---RILLTKTDVAGE  164 (222)
T ss_dssp             CSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTC--S---EEEEECTTTCSC
T ss_pred             cceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhC--C---cccccccccccH
Confidence            34577888886543333221        1224688999999887643322222233444433  2   789999999753


Q ss_pred             CCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHHH
Q 010548          131 HNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVF  168 (507)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  168 (507)
                        .    +......+.+....+++++| .-...++.++
T Consensus       165 --~----~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         165 --A----EKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             --T----HHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             --H----HHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence              1    23344445555444566655 2223444443

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=97.72  E-value=1.1e-05  Score=63.92  Aligned_cols=60  Identities=13%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC----CC-CCCCccccccccCCCCccchHhHHhh
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE----SP-WDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~----~p-~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      +-|+.+|+.||.|++|.|+.+|+..++.....    .+ -....+...++.|.+|.|++++|+++
T Consensus        40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~  104 (107)
T d2pvba_          40 DDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM  104 (107)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred             HHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            45899999999999999999999999876422    12 11344556678899999999999864

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.71  E-value=3.6e-06  Score=63.14  Aligned_cols=68  Identities=15%  Similarity=0.313  Sum_probs=55.9

Q ss_pred             eecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCccccccccCCCCccchHhHHhh
Q 010548          308 VELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       308 ~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .-||+.=++-|+..|+.||.|+||.|+..||..++.....  .+.....+...++.+.+|.|++++|+.+
T Consensus         6 ~~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e~~~~~~~~D~d~~g~I~~~eF~~~   75 (81)
T d1avsa_           6 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVM   75 (81)
T ss_dssp             HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            3578888888999999999999999999999999987533  2233445666678999999999999874

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=2.6e-05  Score=72.35  Aligned_cols=79  Identities=14%  Similarity=0.034  Sum_probs=54.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCCCC-----CCC-------------CCccceeEEEEEEcCCCeEEEEEEecCCchhhh
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPFSE-----NYA-------------PTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK  486 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~~~-----~~~-------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~  486 (507)
                      +|+++|..++|||||+.+++...-..     +..             ...++.-....+.+  +..++.++||+|...|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~--~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE--TTEEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc--CCeEEEEecCCchhhhH
Confidence            69999999999999999997321110     000             01111111222333  56788899999998887


Q ss_pred             hhccchhhcccccEEEEEEeC
Q 010548          487 KILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       487 ~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .-.  ...++.+|++|+|+|+
T Consensus        86 ~e~--~~~l~~~D~avlVvda  104 (276)
T d2bv3a2          86 IEV--ERSMRVLDGAIVVFDS  104 (276)
T ss_dssp             TTH--HHHHHHCCEEEEEEET
T ss_pred             HHH--HHHHHhhhheEEeccc
Confidence            655  6788999999999996

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=2.9e-05  Score=74.32  Aligned_cols=82  Identities=15%  Similarity=0.096  Sum_probs=53.8

Q ss_pred             E-EEEEecCCCCchHHHHHHHhcCCCCCC-----------C-----CCCccceeEEEEEEc--------------CCCeE
Q 010548          424 F-RCLLFGPQNAGKSALLNSFLERPFSEN-----------Y-----APTTGEQYAVNVVDQ--------------PGGNK  472 (507)
Q Consensus       424 ~-kv~ivG~~~vGKSsll~~l~~~~~~~~-----------~-----~~t~~~~~~~~~~~~--------------~~~~~  472 (507)
                      + +|+|+|..+.|||||+.+++...-...           +     ....+..-....+..              .++..
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            5 499999999999999999972111100           0     011111111111211              23456


Q ss_pred             EEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          473 KTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       473 ~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      .+.++||+|...|..-.  ...++-||++++|+|+
T Consensus        97 ~inliDtPGh~dF~~ev--~~al~~~D~allVVda  129 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEV--TAALRVTDGALVVVDT  129 (341)
T ss_dssp             EEEEECCCCCCSSCHHH--HHHHHTCSEEEEEEET
T ss_pred             EEEEEcCCCcHHHHHHH--HHHHhhcCceEEEEec
Confidence            78899999998887655  5788999999999996

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=6.4e-06  Score=65.36  Aligned_cols=62  Identities=19%  Similarity=0.287  Sum_probs=49.2

Q ss_pred             HHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-C-C---CCCCCCccccccccCCCCccchHhHHhh
Q 010548          314 AVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-P-E---SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       314 ~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-p-~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      ..+-++++|+.||+|++|.|+.+|+..++... + +   .++....+...++.|.+|.|++++|.++
T Consensus        39 ~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~l~~~~~~~~~~~~D~d~dG~I~~~EF~~~  105 (108)
T d1rroa_          39 SASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM  105 (108)
T ss_dssp             CHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCCSSSSSEEHHHHHHH
T ss_pred             CHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            34568899999999999999999999999763 2 1   1233444566678999999999999874

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.2e-05  Score=66.66  Aligned_cols=126  Identities=19%  Similarity=0.230  Sum_probs=87.6

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCC----CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~----~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      +++.|...+ +.+|.++.+||...+.+....    +++.+.+..+...+   ..+  .++.|+++.|+.+....      
T Consensus         9 ~~~~F~~~~-~~dG~Is~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~~~---D~d--~~G~I~f~EF~~~~~~~------   76 (172)
T d1juoa_           9 LYGYFAAVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSML---DRD--MSGTMGFNEFKELWAVL------   76 (172)
T ss_dssp             THHHHHHHH-TTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHH---CTT--CSSCEEHHHHHHHHHHH------
T ss_pred             HHHHHHHhC-CCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHH---CCC--CCCceehHHHHHHHHhh------
Confidence            456676664 568999999999988875332    34455555554443   333  37789999999886532      


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCC-
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE-  352 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~-  352 (507)
                                                                +-++..|+.||.|++|.++.+|+..++.......... 
T Consensus        77 ------------------------------------------~~~~~~f~~~D~d~sG~i~~~El~~~l~~~g~~ls~~~  114 (172)
T d1juoa_          77 ------------------------------------------NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQA  114 (172)
T ss_dssp             ------------------------------------------HHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHH
T ss_pred             ------------------------------------------hhhhHHHHHhCcCCCCcCCHHHHHHHHHHHHHhhhHHH
Confidence                                                      2355789999999999999999999998865543221 


Q ss_pred             -CccccccccCCCCccchHhHHhhhhhh
Q 010548          353 -APYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       353 -~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                       ..+...+  +.+|.+++++|+++...+
T Consensus       115 ~~~l~~~~--d~~g~i~~~eF~~~~~~~  140 (172)
T d1juoa_         115 VNSIAKRY--STNGKITFDDYIACCVKL  140 (172)
T ss_dssp             HHHHHHHT--CSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHH--HhcCCcCHHHHHHHHHHH
Confidence             1122222  567999999999877654

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=4.3e-06  Score=61.98  Aligned_cols=69  Identities=19%  Similarity=0.356  Sum_probs=56.4

Q ss_pred             eecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhhh
Q 010548          308 VELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       308 ~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      ..||+.=++-++.+|+.||.|++|.|+.+||..++......|  .....+...++.+.+|.|++++|+.+.
T Consensus         2 ~~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~~~~~~~D~~~~g~I~~~eF~~~m   72 (77)
T d1f54a_           2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALM   72 (77)
T ss_dssp             CCCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHTTCCSSCCEEEHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            357888888899999999999999999999999998753322  233445666788999999999999854

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.64  E-value=6.2e-06  Score=74.20  Aligned_cols=24  Identities=42%  Similarity=0.565  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -..+++|.+|||||||+|+|.+..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            467899999999999999999864

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.64  E-value=4.6e-06  Score=59.62  Aligned_cols=60  Identities=23%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhh
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      +-|+++|+.||.|++|.|+.+|+..++......+  .....+...++.|.+|.|++++|+.+
T Consensus         3 eel~~aF~~fD~d~~G~I~~~el~~~l~~lg~~~~~~e~~~l~~~~D~d~~g~I~~~eF~~~   64 (65)
T d1fw4a_           3 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM   64 (65)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCSSSEEHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHH
Confidence            4489999999999999999999999999864433  33455667788999999999999864

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=97.62  E-value=1.2e-05  Score=60.35  Aligned_cols=67  Identities=16%  Similarity=0.350  Sum_probs=56.4

Q ss_pred             ecCHhHHHHHHHhhhhhcCCC-CCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDN-DGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~-dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      +||+.=.+-+++.|+.||.|+ +|.|+..||..++......|  .....+...++.+.+|.|++++|+.+
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~el~~~i~~~D~d~~G~I~f~eFl~i   77 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVM   77 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCCSSBCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            688888899999999999995 89999999999998754433  33455667788999999999999875

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6.8e-05  Score=65.39  Aligned_cols=131  Identities=27%  Similarity=0.273  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  274 (507)
                      .+.|.+.|.  +.+.+|.++.+++.......+...-+..-.+.|.+.+..     ..++.|+++.|+.....+...    
T Consensus        24 i~~l~~~F~--~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~d~-----~~dg~I~~~EF~~~l~~~~~~----   92 (187)
T d1g8ia_          24 VQQWYKGFI--KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDE-----NKDGRIEFSEFIQALSVTSRG----   92 (187)
T ss_dssp             HHHHHHHHH--HHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCT-----TCSSEEEHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHH--HHCCCCCcCHHHHHHHHHHhcCCCCHHHHHHHHHHHhCc-----CCCCCCcHHHHHHHHHHhccC----
Confidence            344555553  334678999999998888888766665555556555532     245679999999987765421    


Q ss_pred             chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc-------CCC
Q 010548          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT-------APE  347 (507)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~-------~p~  347 (507)
                                                            ...+.++.+|+.||.|+||.|+.+|+..++..       ...
T Consensus        93 --------------------------------------~~~e~l~~~F~~~D~d~dG~i~~~El~~~~~~~~~~~~~~~~  134 (187)
T d1g8ia_          93 --------------------------------------TLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVE  134 (187)
T ss_dssp             --------------------------------------CHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC-----
T ss_pred             --------------------------------------chhhhHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhhhccccc
Confidence                                                  13467888999999999999999999998864       122


Q ss_pred             CCCCCC-------ccccccccCCCCccchHhHHh
Q 010548          348 SPWDEA-------PYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       348 ~p~~~~-------~~~~~~~~~~~~~~~~~~~~~  374 (507)
                      .|+...       .+...++.|.+|.|++++|..
T Consensus       135 ~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~  168 (187)
T d1g8ia_         135 LPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQE  168 (187)
T ss_dssp             CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHH
T ss_pred             CchhhccHHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            333221       123446889999999999998

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=97.59  E-value=5.7e-06  Score=59.69  Aligned_cols=59  Identities=17%  Similarity=0.291  Sum_probs=50.5

Q ss_pred             HHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC---CCccccccccCCCCccchHhHHhh
Q 010548          317 FLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD---EAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       317 fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      =|+.+|+.||+|++|.|+.+||..++......|.+   .+.+...++.|.+|.|++++|+.+
T Consensus         3 el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d~dG~i~~~EF~~~   64 (68)
T d1c7va_           3 EILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDL   64 (68)
T ss_dssp             HHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHH
T ss_pred             HHHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            47899999999999999999999999987665554   344667788999999999999864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.56  E-value=0.00021  Score=63.13  Aligned_cols=94  Identities=16%  Similarity=0.108  Sum_probs=50.9

Q ss_pred             ceEEEEEeCCCCccchhh-hH------Hhh-----ccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecc
Q 010548           58 RVPVTIIDTSSSLENKGK-LN------EEL-----KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~-~~------~~~-----~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~  125 (507)
                      +..+.++||+|....... ..      ..+     ...+-+++|+|++....  .+.. .....+..  + +-=++.+|.
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~--~~~~-~~~~~~~~--~-~~~lI~TKl  161 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQ-AKKFHEAV--G-LTGVIVTKL  161 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHH-HHHHHHHH--C-CSEEEEECT
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCch--HHHH-HHHhhhcc--C-CceEEEecc
Confidence            467899999997544322 11      111     23578899999887632  2221 22222222  2 235689999


Q ss_pred             cCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548          126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |-...--      .+..++...+.  |+..+|  +|++++++
T Consensus       162 Det~~~G------~~l~~~~~~~~--Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         162 DGTAKGG------VLIPIVRTLKV--PIKFVG--VGEGPDDL  193 (207)
T ss_dssp             TSSCCCT------THHHHHHHHCC--CEEEEE--CSSSTTCE
T ss_pred             CCCCCcc------HHHHHHHHHCC--CEEEEe--CCCChHhC
Confidence            9654322      23344555553  455555  35555543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.52  E-value=6.1e-05  Score=68.81  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcCCCCC-------------------------------CCCCCccceeEEEEEEcCC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLERPFSE-------------------------------NYAPTTGEQYAVNVVDQPG  469 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~  469 (507)
                      +..++|+++|-.++|||||+.+|+...-..                               ......+.......+..  
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--   99 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--   99 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc--
Confidence            346799999999999999999995311100                               00000111111111122  


Q ss_pred             CeEEEEEEecCCchhhhhhccchhhcccccEEEEEEeC
Q 010548          470 GNKKTLILQEIPEEGVKKILSNKEALASCDVTIFVYDR  507 (507)
Q Consensus       470 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ad~vilv~D~  507 (507)
                      ...++.++||+|...|....  ......+|++++|+|+
T Consensus       100 ~~~~i~~iDtPGH~df~~~~--~~g~~~aD~ailVVda  135 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNM--INGASQADIGVLVISA  135 (245)
T ss_dssp             SSEEEEECCCCC-------------TTSCSEEEEEEEC
T ss_pred             ccceeeeecccccccchhhh--hhhhhhhcceeeEEEc
Confidence            45678899999998887655  5667889999999996

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.9e-05  Score=62.71  Aligned_cols=76  Identities=18%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             CCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          304 PDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       304 ~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      |+....+|+.-++.++++|+.+|.|++|.|+.+|+.++|..+..++.........++.|.+|.|++++|...-+++
T Consensus        10 ~~~~~~lt~ee~~~y~~lF~~~D~d~~G~Is~~e~~~~l~~s~L~~~~L~~Iw~l~D~d~dG~l~~~EF~~am~Li   85 (110)
T d1iq3a_          10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI   85 (110)
T ss_dssp             CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred             CCCCCccCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHhhccchHHHHHHHHHhccCCCCeECHHHHHHHHHHH
Confidence            3444578888899999999999999999999999999999876555555556667889999999999998644433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=0.00016  Score=64.15  Aligned_cols=94  Identities=17%  Similarity=0.063  Sum_probs=52.2

Q ss_pred             ceEEEEEeCCCCccchhhhH----H---hhc-----cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecc
Q 010548           58 RVPVTIIDTSSSLENKGKLN----E---ELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~~~~----~---~~~-----~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~  125 (507)
                      ++.+.++||+|.........    .   ...     ..+-+++|+|++..  .+.+.. .....+..   -+-=++.+|.
T Consensus        93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~-~~~~~~~~---~~~~lI~TKl  166 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKL  166 (213)
T ss_dssp             TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECG
T ss_pred             CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhh-hhhhcccc---CCceEEEecc
Confidence            56789999999654433211    1   121     14678999998765  333332 33333333   2446789999


Q ss_pred             cCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548          126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      |-...-      -.+..+....+.  |+..++  +|++++++
T Consensus       167 De~~~~------G~~l~~~~~~~~--Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         167 DGTAKG------GITLAIARELGI--PIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GGCSCT------THHHHHHHHHCC--CEEEEE--CSSSGGGE
T ss_pred             cCCCcc------cHHHHHHHHHCC--CEEEEe--CCCCcccC
Confidence            964321      123344455543  555555  57777553

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.49  E-value=6.2e-05  Score=65.18  Aligned_cols=132  Identities=19%  Similarity=0.235  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      -.+.+.+.|.  +.+.+|.++.+|+.......+...-....++.+.+.+..     ..++.|+++.|+.....+....  
T Consensus        22 ei~~l~~~F~--~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~-----~~~g~i~~~eFl~~~~~~~~~~--   92 (181)
T d1bjfa_          22 EIQEWYKGFL--RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDA-----NGDGTIDFREFIIALSVTSRGK--   92 (181)
T ss_dssp             HHHHHHHHHH--HHSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCS-----SCSSEEEHHHHHHHHHHHTSSC--
T ss_pred             HHHHHHHHHH--hhCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC-----CCCCcEeHHHHHHHHHHHhhhc--
Confidence            3444445443  345789999999999998888777776666667666632     2356799999998866443111  


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC-------
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP-------  346 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p-------  346 (507)
                                                              ..+-++.+|+.||.|+||.|+.+|+..++....       
T Consensus        93 ----------------------------------------~~~~~~~~f~~~D~d~dg~i~~~E~~~~~~~~~~~~~~~~  132 (181)
T d1bjfa_          93 ----------------------------------------LEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVM  132 (181)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTT
T ss_pred             ----------------------------------------hHHHHHHHHHHhccCCCCeecHHHHHHHHHHHhhhccccc
Confidence                                                    235677899999999999999999999988521       


Q ss_pred             CCCCCC-------CccccccccCCCCccchHhHHh
Q 010548          347 ESPWDE-------APYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       347 ~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~  374 (507)
                      ..+|..       ..+...++.|.+|.|++++|..
T Consensus       133 ~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~  167 (181)
T d1bjfa_         133 KMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIR  167 (181)
T ss_dssp             TSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHH
T ss_pred             cCCcccccHHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            122321       1123456789999999999987

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.48  E-value=8.8e-05  Score=65.43  Aligned_cols=132  Identities=19%  Similarity=0.213  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      -...+.+.|.  +.+.+|.++.+|+......++.......-++.+.+.+.     ...++.|+++.|+.....+....  
T Consensus        26 ei~~l~~~F~--~~~~~G~is~~EF~~~l~~~~~~~~~~~~~~~if~~~D-----~~~~G~I~f~EF~~~~~~~~~~~--   96 (201)
T d1omra_          26 ELSSWYQSFL--KECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFD-----ANSDGTLDFKEYVIALHMTSAGK--   96 (201)
T ss_dssp             HHHHHHHHHH--HHCTTSEEEHHHHHHHHHHHCTTSCCHHHHHHHHHTTT-----SCSSSEEEHHHHHHHHHHHHSSC--
T ss_pred             HHHHHHHHHH--HHCcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-----cCCCCeEeehhHHHHHHhhcccc--
Confidence            3344455552  33467899999999888888777666665566655442     23456799999988765443111  


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC--------
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA--------  345 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~--------  345 (507)
                                                              ..+.++.+|+.||.|++|.++.+|+..++...        
T Consensus        97 ----------------------------------------~~~~l~~~F~~~D~d~~G~is~~E~~~~~~~~~~~~~~~~  136 (201)
T d1omra_          97 ----------------------------------------TNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPED  136 (201)
T ss_dssp             ----------------------------------------GGGSHHHHHHHHCTTCSSSBCHHHHHHHHHHHHTTSCHHH
T ss_pred             ----------------------------------------hHHHHHHHHHHHccCCCCccCHHHHHHHHHHHHhhcChhh
Confidence                                                    11346788999999999999999998877641        


Q ss_pred             -CCCCCCC-------CccccccccCCCCccchHhHHh
Q 010548          346 -PESPWDE-------APYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       346 -p~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~  374 (507)
                       +..|...       ..+...+++|.+|.|++++|+.
T Consensus       137 ~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~  173 (201)
T d1omra_         137 TKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIE  173 (201)
T ss_dssp             HTTSCGGGSSHHHHHHHHHHHTTCCTTCCBCHHHHHH
T ss_pred             hhhhhhhhccHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence             1222221       1123446889999999999987

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.48  E-value=7e-06  Score=59.01  Aligned_cols=60  Identities=18%  Similarity=0.314  Sum_probs=48.5

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCccccccccCCCCccchHhHHhhhh
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSKWA  377 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~  377 (507)
                      .+++|+.||.|++|.|+..|+..++.....  .+.....+...++++.+|.|++++|+.+..
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~   64 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIE   64 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHHHHHhccccchHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence            578999999999999999999999987533  223334456667899999999999998653

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=97.46  E-value=1.3e-05  Score=61.62  Aligned_cols=70  Identities=23%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             HhHHHHHHHhhhhh-cCCCC-CCCCHHHHHhhhcc-CCCC---CCC---CCccccccccCCCCccchHhHHhhhhhhhh
Q 010548          312 SEAVEFLRGIFGLY-DIDND-GAVRPAELEDLFLT-APES---PWD---EAPYKDAAETTALGNLTLKGFVSKWALMTL  381 (507)
Q Consensus       312 ~~~~~fl~~~f~~~-d~d~d-g~l~~~el~~~f~~-~p~~---p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  381 (507)
                      +.+++-|..+|.+| |+|++ |.|+.+||.+++.. .|..   |..   ...+...++.|.+|.|++++|+.++..++.
T Consensus         5 E~~i~~l~~~F~~y~d~dg~~G~is~~El~~~L~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~Idf~EF~~lm~~l~~   83 (93)
T d1zfsa1           5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV   83 (93)
T ss_dssp             HHHHHHHHHHHHHHGGGSSCCSSEEHHHHHHHHHHHSTTTSCCSSCHHHHHHHHHHHTTTCCSEECSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCCCEecHHHHHHHHHHhcccccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH
Confidence            35788999999999 88875 99999999999975 3332   222   223556778999999999999999877763

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.8e-05  Score=67.85  Aligned_cols=80  Identities=16%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccCCC-------CCCCCCccccccccCCCCccchHhHHhhhhhhh----------
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPE-------SPWDEAPYKDAAETTALGNLTLKGFVSKWALMT----------  380 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~p~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----------  380 (507)
                      +.++|.++ .++||.++.+||+.++.....       ++..+..+...++.|.+|.|++++|+.+|..+.          
T Consensus         2 ~~~~F~~~-a~~dG~I~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~D~~~~G~i~~~EF~~l~~~~~~~~~~F~~fD   80 (165)
T d1k94a_           2 VYTYFSAV-AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVD   80 (165)
T ss_dssp             HHHHHHHH-HGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHh-cCCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHhhccchhHHHHHHhC
Confidence            45677777 689999999999999876322       222244456667899999999999999999887          


Q ss_pred             -----hcCHHHHHHHHHhhCCCC
Q 010548          381 -----LLDPRHSLANLIYVGYGG  398 (507)
Q Consensus       381 -----~~d~~~~l~~l~~lg~~~  398 (507)
                           +++..+...++..+|++-
T Consensus        81 ~d~sG~I~~~El~~~l~~~G~~l  103 (165)
T d1k94a_          81 QDGSGTVEHHELRQAIGLMGYRL  103 (165)
T ss_dssp             TTCCSBCCHHHHHHHHHHTTCCC
T ss_pred             CCCCCeEcHHHHHHHHHHhhhcC
Confidence                 788888888888888864

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.2e-05  Score=62.11  Aligned_cols=68  Identities=22%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      -+|+.-.+.++++|+.+|.|++|.++.+|+..+|.....++.....+-..++.|.+|.|++++|...=
T Consensus         3 ~lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~~~l~~~~l~~i~~~~D~d~dG~l~~~EF~~am   70 (95)
T d1c07a_           3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAF   70 (95)
T ss_dssp             SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence            36778888999999999999999999999999998865433223334556789999999999997643

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=97.42  E-value=1.6e-05  Score=60.86  Aligned_cols=68  Identities=19%  Similarity=0.213  Sum_probs=54.9

Q ss_pred             HhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc-------CCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          312 SEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT-------APESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       312 ~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~-------~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      +.+++-|..+|.+||.| ||.|+.+||..++..       .+..+.....+...++.|.+|.|++++|..+=..++
T Consensus         5 E~~ie~l~~~F~~yd~d-dG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l~   79 (92)
T d1a4pa_           5 EHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLT   79 (92)
T ss_dssp             HHHHHHHHHHHHHHHGG-GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHhccccccccCCHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence            35788999999999988 899999999999864       123455556677888999999999999987655444

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=1.1e-05  Score=62.01  Aligned_cols=71  Identities=15%  Similarity=0.256  Sum_probs=56.8

Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .+|+.-.+.++++|+.+|.|++|.++.+|+..+|..+.-+.-....+...+++|.+|.|++++|...=+++
T Consensus         2 ~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~~l~~~~l~~i~~~~D~d~dG~l~~~EF~~a~~li   72 (92)
T d1fi6a_           2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV   72 (92)
T ss_dssp             CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHccCCHHHHHHHHHHhCCCCCCeecHHHHHHHHHHH
Confidence            47888999999999999999999999999999999764333223334556789999999999997644333

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00068  Score=59.76  Aligned_cols=93  Identities=20%  Similarity=0.145  Sum_probs=51.9

Q ss_pred             ceEEEEEeCCCCccchh-hhH------Hhhc-----cCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecc
Q 010548           58 RVPVTIIDTSSSLENKG-KLN------EELK-----RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKL  125 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~-~~~------~~~~-----~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~  125 (507)
                      ++.+.++||+|...... +..      ..++     ..+-+++|.|++...  +.+.. .....+..   -+-=++.+|.
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~-~~~~~~~~---~~~~lIlTKl  164 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQ-AKLFHEAV---GLTGITLTKL  164 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHH-HHHHHHHS---CCCEEEEECC
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHH-Hhhhhhcc---CCceEEEeec
Confidence            45789999999643322 111      2232     246899999987652  22222 33333332   2346789999


Q ss_pred             cCCCCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchH
Q 010548          126 DLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPD  166 (507)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  166 (507)
                      |-...-      -.+..+....+.  |+..++  +|++|++
T Consensus       165 De~~~~------G~~l~~~~~~~~--Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAKG------GVIFSVADQFGI--PIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTTT------THHHHHHHHHCC--CEEEEE--CSSSGGG
T ss_pred             CCCCCc------cHHHHHHHHHCC--CEEEEe--CCCCccc
Confidence            965421      223344455553  566665  6777755

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.00011  Score=64.21  Aligned_cols=132  Identities=17%  Similarity=0.160  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      -.+.+.+.|.  +.+.+|.++..++......++.......-++.+.+.+     +...++.|+++.|+.....+....  
T Consensus        26 Ei~~l~~~F~--~~~~~G~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~-----D~~~~G~I~~~Ef~~~~~~~~~~~--   96 (190)
T d1fpwa_          26 EIQQWHKGFL--RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVF-----DKDNNGFIHFEEFITVLSTTSRGT--   96 (190)
T ss_dssp             HHHHHHHHHH--HHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTC-----CSSCSSEECHHHHHHHHHHHSCCC--
T ss_pred             HHHHHHHHHH--HHCCCCCccHHHHHHHHHHHCCCCChHHHHHHHHHHh-----CcCCCCcccHHHHHHHHHHHccCc--
Confidence            3444555553  3445788999999888888877666655555555443     223466799999988765443111  


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-------C
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-------P  346 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-------p  346 (507)
                                                              ..+-++.+|+.||.|+||.|+.+|+..++...       +
T Consensus        97 ----------------------------------------~~e~~~~~F~~~D~d~dG~is~~E~~~~~~~~~~~~~~~~  136 (190)
T d1fpwa_          97 ----------------------------------------LEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMV  136 (190)
T ss_dssp             ----------------------------------------STHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTT
T ss_pred             ----------------------------------------hHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHHhccccc
Confidence                                                    12567889999999999999999999988642       1


Q ss_pred             CCCCCC-------CccccccccCCCCccchHhHHh
Q 010548          347 ESPWDE-------APYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       347 ~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~  374 (507)
                      ...+..       ..+...++.|.+|.|++++|..
T Consensus       137 ~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~  171 (190)
T d1fpwa_         137 TLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFRE  171 (190)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHH
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            111111       1233446889999999999986

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.39  E-value=1.2e-05  Score=59.14  Aligned_cols=61  Identities=20%  Similarity=0.307  Sum_probs=50.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCccccccccCCCCccchHhHHhh
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+-|+.+|+.||++++|.|+..||..++.....  .++....+...++.+.+|.|++++|+.+
T Consensus         8 eeel~~~F~~fD~~~~G~I~~~el~~~l~~lg~~~~~~e~~~~~~~~D~d~dg~I~~~EF~~~   70 (75)
T d1jc2a_           8 EEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKM   70 (75)
T ss_dssp             HHHHHHHHHHHCCSTTSSEEHHHHHHHHHHSSSCCCHHHHHHHHHHHCSSSCSEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCeEcHHHHHHHHHhcCCCccHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            356899999999999999999999999987533  3344555677788999999999999864

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

Probab=97.39  E-value=9.2e-05  Score=69.96  Aligned_cols=182  Identities=12%  Similarity=0.152  Sum_probs=110.9

Q ss_pred             cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       189 ~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      .+.++-...++++|..+|.+.+|.++.+|+...+.. ++..++..++..+...+...     .++.|++..|+.++...-
T Consensus       115 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~~~~~~  188 (321)
T d1ij5a_         115 MLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAK-YADTIPEGPLKKLFVMVEND-----TKGRMSYITLVAVANDLA  188 (321)
T ss_dssp             CCCHHHHHHHHHHHTSSSSTTSSCCCHHHHHHHHHH-HHTTSCSSHHHHHHHHHHHC-----CSSTHHHHHHTTSHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHH-cCCcccHHHHHHHHHHHhhc-----CCccccchhhhhhhhhhh
Confidence            345566778999999999999999999999998876 56778888888888877533     356778888876643221


Q ss_pred             HcCC-------c-------cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecC-----HhHHHHHHHhhhhhcCCC
Q 010548          269 EKGR-------L-------ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELA-----SEAVEFLRGIFGLYDIDN  329 (507)
Q Consensus       269 ~~~~-------~-------~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s-----~~~~~fl~~~f~~~d~d~  329 (507)
                      .-..       .       +.....++..+......... .+- ..+...+......     .....-+...|..+|.|+
T Consensus       189 ~~~~~F~~~d~d~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~ef~~~~~~~~~~~~~F~~~D~d~  266 (321)
T d1ij5a_         189 ALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDA-LFR-YADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDK  266 (321)
T ss_dssp             TSCCCHHHHCTTCCSEECHHHHHHHHHHTTCCCHHHHHH-HHH-HHCTTCSSCEEHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred             hhhHHHHHHhhcccccchhHHHhhhhhcccccchHHHHH-HHH-hhhcccccccccccccchhhhhhHHHHHHHHHhcCC
Confidence            1000       0       00011112222111110000 000 0011111111111     112244567899999999


Q ss_pred             CCCCCHHHHHhhhccCCC--CCC-CCCccccccccCCCCccchHhHHhhhhh
Q 010548          330 DGAVRPAELEDLFLTAPE--SPW-DEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       330 dg~l~~~el~~~f~~~p~--~p~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      +|.|+..|+.+++.....  .+. ....+...+++|.+|.|++++|+.+=-+
T Consensus       267 ~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~ml~  318 (321)
T d1ij5a_         267 SGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLL  318 (321)
T ss_dssp             CSSEEHHHHHHHHHHTTCCGGGCSTHHHHHHHHTTTTCSEECHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHcCCCcCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            999999999999986543  222 2234556678999999999999975433

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=97.37  E-value=1.7e-05  Score=60.75  Aligned_cols=70  Identities=20%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             HhHHHHHHHhhhhh-cCCCCC-CCCHHHHHhhhcc-CCC---C---CCCCCccccccccCCCCccchHhHHhhhhhhhh
Q 010548          312 SEAVEFLRGIFGLY-DIDNDG-AVRPAELEDLFLT-APE---S---PWDEAPYKDAAETTALGNLTLKGFVSKWALMTL  381 (507)
Q Consensus       312 ~~~~~fl~~~f~~~-d~d~dg-~l~~~el~~~f~~-~p~---~---p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  381 (507)
                      +.+++-+..+|.+| |+|+|| .|+..|++++... .|.   .   +-....+...++.|.+|.|++++|+.++..++.
T Consensus         5 E~~i~~i~~vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l~~   83 (93)
T d1ksoa_           5 EQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCL   83 (93)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHH
Confidence            45788899999999 999999 5999999999875 222   1   112234566789999999999999999998873

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00013  Score=63.15  Aligned_cols=70  Identities=19%  Similarity=0.348  Sum_probs=56.5

Q ss_pred             CHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC---CCccccccccCCCCccchHhHHhhhhhhh
Q 010548          311 ASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD---EAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       311 s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      +..-.++|+++|+.+|.|++|.|+.+|+..++......+..   ...+...++++.+|.|++++|+++|....
T Consensus        14 ~~~~~~~L~~iF~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EFl~~~~~~~   86 (181)
T d1hqva_          14 ALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYIT   86 (181)
T ss_dssp             CCSCHHHHHHHHHHHCTTCCSSBCHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCSSSSSBCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCcccHHHHHHHhhccccccccchhhhHHHhhhhhcc
Confidence            33445889999999999999999999999999876555433   23344557889999999999999998765

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=2e-05  Score=55.39  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=46.8

Q ss_pred             HHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCccccccccCCCCccchHhHH
Q 010548          317 FLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAPYKDAAETTALGNLTLKGFV  373 (507)
Q Consensus       317 fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~  373 (507)
                      =|++.|+.||++++|.|+.+||..++.....  .+-....+...++.+.+|.|++++|+
T Consensus         2 el~~aF~~fD~~~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~D~d~dg~I~~~eFl   60 (61)
T d2fcea1           2 DFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFI   60 (61)
T ss_dssp             HHHHHHHHHCTTCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCTTSEECHHHHH
T ss_pred             hHHHHHHHHCCCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHhc
Confidence            3788999999999999999999999987533  22333456677889999999999997

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=97.32  E-value=1.9e-05  Score=59.03  Aligned_cols=61  Identities=20%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhh
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+-|+.+|+.||.|++|.|+..||..++......|  -....+...++.|.+|.|++++|+.+
T Consensus        14 ee~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ev~~~~~~~D~d~dg~I~~~EF~~~   76 (81)
T d1fi5a_          14 EEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF   76 (81)
T ss_dssp             HHHHHHHHHHHCSSCSSEECHHHHHHHHHTSSSCCCHHHHHHHHHHHCSSSSSSEEHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHH
Confidence            46799999999999999999999999998754332  11334556678899999999999874

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=97.31  E-value=1e-05  Score=70.97  Aligned_cols=89  Identities=15%  Similarity=0.185  Sum_probs=55.3

Q ss_pred             eecCHhHH-HHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC----------CCCCCCccccccccCCCCccchHhHHhhh
Q 010548          308 VELASEAV-EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE----------SPWDEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       308 ~~~s~~~~-~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~----------~p~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      ..+|+.-. +.|+++|+++|. +||.++..||+.++.....          ++..+..+...++.|.+|.|++++|.++|
T Consensus        11 ~~ls~~~~~~~~r~~F~~~d~-~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~li~~~D~d~~G~i~~~EF~~l~   89 (188)
T d1qxpa2          11 KVLSEEEIDDNFKTLFSKLAG-DDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILW   89 (188)
T ss_dssp             ----------------CCCCC-SSSSCCCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC--CCCCCSSSHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcC-CCCEECHHHHHHHHHHhCccccccccccCCHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence            35565554 578999999995 4899999999999875322          12224456677899999999999999999


Q ss_pred             hhhh---------------hcCHHHHHHHHHhhCCC
Q 010548          377 ALMT---------------LLDPRHSLANLIYVGYG  397 (507)
Q Consensus       377 ~~~~---------------~~d~~~~l~~l~~lg~~  397 (507)
                      ..+.               .++..+...+|..+|+.
T Consensus        90 ~~~~~~~~~F~~~D~d~sG~i~~~El~~~l~~~g~~  125 (188)
T d1qxpa2          90 NRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFK  125 (188)
T ss_dssp             HHHHHHHHHHGGGCTTCCSCCBHHHHHHHHHHTTEE
T ss_pred             hhhHHHHHHHHHhCCCCCCEECHHHHHHHHHHhhhc
Confidence            8775               77777777777777765

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.00038  Score=59.82  Aligned_cols=131  Identities=18%  Similarity=0.255  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCcc
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLE  274 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  274 (507)
                      .+.+.+.|.  +.+.+|.++.+|+.......+...-...-++.+.+.+.     ...++.|+++.|+.....+.....  
T Consensus        15 i~~l~~~F~--~~~~~G~is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D-----~~~~g~I~~~EFl~~~~~~~~~~~--   85 (178)
T d1s6ca_          15 LQVLYRGFK--NECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFD-----TTQTGSVKFEDFVTALSILLRGTV--   85 (178)
T ss_dssp             HHHHHHHHH--HHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHC-----TTCSSCEEHHHHHHHHHHHHHCCH--
T ss_pred             HHHHHHHHH--HHCcCCCccHHHHHHHHHHhCCCCCHHHHHHHHHHHHC-----CCCCCcccHHHHHHHHHHHhccch--
Confidence            334444443  33457899999999998888777666655677776663     234667999999988776653221  


Q ss_pred             chhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-------CC
Q 010548          275 TTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-------PE  347 (507)
Q Consensus       275 ~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-------p~  347 (507)
                                                              .+-++.+|+.||.|++|.++.+|+..++...       ..
T Consensus        86 ----------------------------------------~~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~  125 (178)
T d1s6ca_          86 ----------------------------------------HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTY  125 (178)
T ss_dssp             ----------------------------------------HHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC----
T ss_pred             ----------------------------------------HHHHHHHHHhhccCCCCeecHHHHHHHHHHHHhhcccccc
Confidence                                                    3456778999999999999999998877631       11


Q ss_pred             CCCCC---C----ccccccccCCCCccchHhHHh
Q 010548          348 SPWDE---A----PYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       348 ~p~~~---~----~~~~~~~~~~~~~~~~~~~~~  374 (507)
                      .++..   .    .+..-++.|.+|.|++++|..
T Consensus       126 ~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~  159 (178)
T d1s6ca_         126 PVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE  159 (178)
T ss_dssp             -------CHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence            12221   1    122335789999999999986

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.28  E-value=0.00029  Score=60.89  Aligned_cols=137  Identities=16%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             cHHHHHHHHHHHhhccCC--CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDHD--MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~--~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      .+.-...|.+.|...+.+  .+|.++.+|+..........+ . .-.+.+.+.+.   .+  .++.|+++.|+.....+.
T Consensus        12 s~~ei~~L~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~-~-~~~~~lf~~~d---~~--~dg~I~f~EFl~~l~~~~   84 (183)
T d2zfda1          12 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-S-LFADRVFDLFD---TK--HNGILGFEEFARALSVFH   84 (183)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCC-C-HHHHHHHHHHC---SS--CSSSBCHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhcCCCC-C-HHHHHHHHHHc---cC--CCCcCcHHHHHHHHHhhh
Confidence            455566788888776654  689999999987764433332 2 22333333332   22  367899999988754332


Q ss_pred             HcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC---
Q 010548          269 EKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA---  345 (507)
Q Consensus       269 ~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~---  345 (507)
                      .++.                                         ..+-++.+|+.||.|++|.|+.+|+..++...   
T Consensus        85 ~~~~-----------------------------------------~~~~~~~~F~~~D~d~~G~Is~~e~~~~~~~~~~~  123 (183)
T d2zfda1          85 PNAP-----------------------------------------IDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAE  123 (183)
T ss_dssp             TTSC-----------------------------------------HHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHH
T ss_pred             ccCc-----------------------------------------HHHHHHHhhcccccCCCCCccHHHHHHHHHHHHhh
Confidence            1111                                         24568889999999999999999999987642   


Q ss_pred             CCCCCCC---Cc----cccccccCCCCccchHhHHhh
Q 010548          346 PESPWDE---AP----YKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       346 p~~p~~~---~~----~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+..+..   ..    ....++.|.+|.|++++|...
T Consensus       124 ~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~  160 (183)
T d2zfda1         124 SGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSL  160 (183)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHhCCCCCCeEcHHHHHHH
Confidence            1222221   11    224467899999999999884

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.27  E-value=0.00053  Score=59.54  Aligned_cols=132  Identities=17%  Similarity=0.176  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhcc-CCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCc
Q 010548          195 VRALKRIFIICD-HDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRL  273 (507)
Q Consensus       195 ~~~l~~~~~~~d-~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~  273 (507)
                      ...++..+..+. ...+|.++-+|+..... .++.......++.+.+.+..     ..++.|++..|+.....+....  
T Consensus        20 ~~ei~~~~~~F~~~~~~G~i~~~Ef~~~l~-~~~~~~~~~~~~~lf~~~D~-----d~dG~I~f~Ef~~~l~~~~~~~--   91 (189)
T d1jbaa_          20 AAQLQEWYKKFLEECPSGTLFMHEFKRFFK-VPDNEEATQYVEAMFRAFDT-----NGDNTIDFLEYVAALNLVLRGT--   91 (189)
T ss_dssp             HHHHHHHHHHHHSSSTTCCEEHHHHHHHHH-CCSSSTTHHHHHHHHHHHCC-----SSSSEECHHHHHHHHHHHSSCC--
T ss_pred             HHHHHHHHHHhcccCCCCeeeHHHHHHHHH-HcCCCccHHHHHHHHHHhcc-----CCCCeEeehhHHHHHHhhcccc--
Confidence            334555555543 33589999999988875 45567777777777666543     2366799999998866443111  


Q ss_pred             cchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc-------C-
Q 010548          274 ETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT-------A-  345 (507)
Q Consensus       274 ~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~-------~-  345 (507)
                                                              ..+.++.+|+.||.|++|.++..|+..++..       . 
T Consensus        92 ----------------------------------------~~~~~~~~F~~~D~d~~g~i~~~E~~~~~~~~~~~~~~~~  131 (189)
T d1jbaa_          92 ----------------------------------------LEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACS  131 (189)
T ss_dssp             ----------------------------------------CTHHHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSS
T ss_pred             ----------------------------------------hHHHHHHHHhhhccCCCCcccHhHHHHHHHHHHHhhcccc
Confidence                                                    1245677899999999999999999887753       1 


Q ss_pred             -CCCCCCC----------CccccccccCCCCccchHhHHh
Q 010548          346 -PESPWDE----------APYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       346 -p~~p~~~----------~~~~~~~~~~~~~~~~~~~~~~  374 (507)
                       +..+...          ..+...++.|.+|.|++++|+.
T Consensus       132 ~~~~~~~~~~~~~~e~~~~~if~~~D~d~dG~Is~~EF~~  171 (189)
T d1jbaa_         132 VEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVE  171 (189)
T ss_dssp             CCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHH
T ss_pred             ccchhhhhccccchHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence             1111111          1133446789999999999986

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=97.25  E-value=8.9e-05  Score=57.31  Aligned_cols=67  Identities=10%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             hHHHHHHHhhhhh-cCCCC-CCCCHHHHHhhhcc-CCCCC---CCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          313 EAVEFLRGIFGLY-DIDND-GAVRPAELEDLFLT-APESP---WDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       313 ~~~~fl~~~f~~~-d~d~d-g~l~~~el~~~f~~-~p~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .+.+-+..+|.+| |.|++ |.|+..||.+++.. .|..+   -....+...++.|.+|.|++++|+.+=.-+
T Consensus        11 ~~i~~l~~vF~~y~d~dg~~g~is~~El~~~l~~~~~~~~~~~~~v~~l~~~~D~d~DG~IdF~EF~~l~~~l   83 (98)
T d1yuta1          11 ESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL   83 (98)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSSCBCHHHHHHHHHHHCTTTTCCSSCHHHHHHHHCTTCCSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCCCCCEEcHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            5678899999999 67775 99999999999975 44422   223456677899999999999999865443

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.25  E-value=2.3e-05  Score=57.89  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=49.1

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC--CCCCCCccccccccCCCCccchHhHHhh
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE--SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+-|+++|+.||+|++|.|+.+|+..++.....  .+.....+...++.+.+|.|++++|+.+
T Consensus         8 ~e~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~~~~~~D~d~~G~I~~~EF~~~   70 (77)
T d1oqpa_           8 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRI   70 (77)
T ss_dssp             HHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSSEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCEechHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence            457899999999999999999999999998433  2222344556678899999999999863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.25  E-value=0.0005  Score=60.72  Aligned_cols=95  Identities=14%  Similarity=0.022  Sum_probs=52.3

Q ss_pred             CceEEEEEeCCCCccchh---hh---HH--hhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCC
Q 010548           57 DRVPVTIIDTSSSLENKG---KL---NE--ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLR  128 (507)
Q Consensus        57 ~~~~~~i~Dt~G~~~~~~---~~---~~--~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~  128 (507)
                      .+..+.++||+|...+..   ..   ..  ..-..+-+++|+|++....-  +.. .....+..  + +-=++.+|.|-.
T Consensus        93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~--~~~-~~~~~~~~--~-~~~lI~TKlDet  166 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA--YDL-ASKFNQAS--K-IGTIIITKMDGT  166 (211)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHH-HHHHHHHC--T-TEEEEEECTTSC
T ss_pred             cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch--HHH-Hhhhhccc--C-cceEEEecccCC
Confidence            346899999999654331   11   11  12345788999998876432  221 22333332  2 234679999965


Q ss_pred             CCCCccchhhhhHHHHHHhcccCcEEEeCcccCCCchHH
Q 010548          129 GDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDV  167 (507)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  167 (507)
                      ..      --.+..++...+.  |+..+|  +|++|+++
T Consensus       167 ~~------~G~~l~~~~~~~l--Pi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         167 AK------GGGALSAVAATGA--TIKFIG--TGEKIDEL  195 (211)
T ss_dssp             SC------HHHHHHHHHTTTC--CEEEEE--CSSSTTCE
T ss_pred             Cc------ccHHHHHHHHHCc--CEEEEe--CCCCcccC
Confidence            42      1233444455553  555555  57777553

>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]

Probab=97.25  E-value=6.8e-05  Score=58.27  Aligned_cols=70  Identities=11%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             CHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhcc-C--------CCCCCCCCccccccccCCCCccchHhHHhhhhhhhh
Q 010548          311 ASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLT-A--------PESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL  381 (507)
Q Consensus       311 s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~-~--------p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  381 (507)
                      ++.++.-+..+|.+|+ ++||.|+..||.+++.. .        +..|-....+...++.|.+|.|++++|+.++..++.
T Consensus         5 ~E~~i~~l~~~F~~y~-~~dG~i~~~El~~ll~~~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l~~   83 (100)
T d1psra_           5 AERSIIGMIDMFHKYT-RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDIAT   83 (100)
T ss_dssp             HHHHHHHHHHHHHHTC-CTTSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHccccccccccCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHH
Confidence            3556777889999997 78999999999999985 2        234545566677789999999999999999887653

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.24  E-value=0.00011  Score=57.99  Aligned_cols=61  Identities=15%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC---CCCC--CCccccccccCCCCccchHhHHhh
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE---SPWD--EAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~---~p~~--~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      ..-++.+|+.||+|++|.|+..|+..++.....   .++.  ...+...++.|.+|.|++++|.++
T Consensus        40 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e~~~~~~~~D~d~dG~i~~~EF~~~  105 (109)
T d1rwya_          40 ADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTL  105 (109)
T ss_dssp             HHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHH
T ss_pred             HHHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence            456789999999999999999999999875221   1111  234556678899999999999874

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0001  Score=63.84  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             cCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCC
Q 010548          251 NDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDND  330 (507)
Q Consensus       251 ~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~d  330 (507)
                      .++.|+++.|+.....+..++..                                         .+-++-+|+.||.|++
T Consensus        71 ~~g~I~f~EFv~~l~~~~~~~~~-----------------------------------------~~kl~~~F~~~D~d~~  109 (180)
T d1xo5a_          71 AKDSLSFEDFLDLLSVFSDTATP-----------------------------------------DIKSHYAFRIFDFDDD  109 (180)
T ss_dssp             TCCEECHHHHHHHHHHHSTTSCH-----------------------------------------HHHHHHHHHHHCTTCS
T ss_pred             CCCcCcHHHHHHHHHHHhhcCCH-----------------------------------------HHHHHHhhccccCCCC
Confidence            46789999999887655433222                                         3567778999999999


Q ss_pred             CCCCHHHHHhhhccC----CCCCCCCCc-------cccccccCCCCccchHhHHhh
Q 010548          331 GAVRPAELEDLFLTA----PESPWDEAP-------YKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       331 g~l~~~el~~~f~~~----p~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      |.|+.+||..++...    ....+....       +...++.|.+|.|++++|...
T Consensus       110 G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~dG~Is~~EF~~~  165 (180)
T d1xo5a_         110 GTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHV  165 (180)
T ss_dssp             SSBCHHHHHHHHHHHC------CCCCTTHHHHHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred             CeeeHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence            999999999987642    122222211       223457899999999999873

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=3.6e-05  Score=59.30  Aligned_cols=70  Identities=13%  Similarity=0.089  Sum_probs=56.6

Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      .||++-.+.++++|+.+| ++||.++..|+..+|..+.-++.....+-..++.|.+|.|++++|.-.=+++
T Consensus         3 ~ls~ee~~~y~~~F~~~D-~~~G~i~~~el~~~l~~~gl~~~~L~~Iw~~~D~~~dG~l~~~EF~~a~~Li   72 (95)
T d2jxca1           3 AVKPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV   72 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTC-CBTTEEEHHHHHHHHTTSSCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCeEcHHHHHHHHHHH
Confidence            478899999999999999 8999999999999999875444333445566889999999999996544333

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=0.00012  Score=54.02  Aligned_cols=67  Identities=16%  Similarity=0.263  Sum_probs=52.2

Q ss_pred             HhHHHHHHHhhhhhcC-C-CCCCCCHHHHHhhhcc-CCC---CCCCCCccccccccCCCCccchHhHHhhhhh
Q 010548          312 SEAVEFLRGIFGLYDI-D-NDGAVRPAELEDLFLT-APE---SPWDEAPYKDAAETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       312 ~~~~~fl~~~f~~~d~-d-~dg~l~~~el~~~f~~-~p~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (507)
                      ..+.+-|+.+|.+||. | +.|.|+.+||..++.. .|.   .+...+.+...++.|.+|.|++++|+++=..
T Consensus         3 e~~~~~l~~~F~~y~~~d~~~g~is~~Elk~ll~~~~~~~~~~~~~v~~~~~~~D~d~dG~Idf~EF~~l~~~   75 (78)
T d1cb1a_           3 QKSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK   75 (78)
T ss_dssp             SCCHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHccCCCCCCEECHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            3457789999999975 3 4589999999999976 443   3455666777789999999999999876443

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=97.05  E-value=4.3e-05  Score=66.69  Aligned_cols=64  Identities=19%  Similarity=0.326  Sum_probs=50.7

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhccC-------CCCCC---CCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTA-------PESPW---DEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-------p~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      +.|+++|.++| ++||.|+..||+.++...       +..+.   .+..+...++.|.+|.|++++|.++|....
T Consensus        18 ~~~r~~F~~~d-~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~~G~I~~~EF~~~~~~~~   91 (186)
T d1df0a1          18 DGFRRLFAQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQ   91 (186)
T ss_dssp             HHHHHHHHHHH-GGGTCEEHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCeEcHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHcCCCCCcccHHHHHHHHHhHH
Confidence            56899999999 999999999999998641       11222   234455677899999999999999998765

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]

Probab=97.05  E-value=0.0001  Score=55.46  Aligned_cols=69  Identities=16%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             hHHHHHHHhhhhhc-CCCCC-CCCHHHHHhhhcc-CCC------CCCCCCccccccccCCCCccchHhHHhhhhhhhh
Q 010548          313 EAVEFLRGIFGLYD-IDNDG-AVRPAELEDLFLT-APE------SPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL  381 (507)
Q Consensus       313 ~~~~fl~~~f~~~d-~d~dg-~l~~~el~~~f~~-~p~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  381 (507)
                      .+++-+..+|.+|+ +|+++ .|+..||++++.. .|.      .|-....+....+.|.+|.|++++|+.++..++.
T Consensus         5 ~ai~~li~vF~kya~~~g~~~~Lsk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~lD~n~Dg~idF~EF~~li~~l~~   82 (87)
T d1e8aa_           5 EHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIALK   82 (87)
T ss_dssp             HHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSTTTSTTTTSHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCCCCCeEcHHHHHHHHHHHccccccCCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHH
Confidence            57788999999994 56665 5999999999975 333      2222344566688999999999999999887763

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=97.03  E-value=0.00019  Score=42.79  Aligned_cols=29  Identities=31%  Similarity=0.568  Sum_probs=26.1

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhcc
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~  344 (507)
                      +-|+.-|+.||+|++|.++..||..++.+
T Consensus         3 eel~eAF~~FDkDg~G~Is~~EL~~vm~~   31 (33)
T d2hf5a1           3 EEIREAFRVFDKDGNGYISAAELRHVMTN   31 (33)
T ss_dssp             HHHHHHHHHHSSSCCSCBCHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            45889999999999999999999998764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.02  E-value=0.0006  Score=64.08  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=25.1

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENY  452 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~  452 (507)
                      -+|+|||..++|||||+|.++|.++..+.
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~   53 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRG   53 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCC
Confidence            38999999999999999999999875443

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=97.02  E-value=1.6e-05  Score=60.33  Aligned_cols=65  Identities=25%  Similarity=0.371  Sum_probs=51.3

Q ss_pred             cCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCC--CCCccccccccCCCCccchHhHHh
Q 010548          310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPW--DEAPYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       310 ~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~--~~~~~~~~~~~~~~~~~~~~~~~~  374 (507)
                      |++.-+.-|+++|+.||.|++|.|+..||..++......|-  ....+...++.+.+|.|++++|++
T Consensus        17 l~~~~i~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~s~~e~~~l~~~~D~d~~g~I~~~EFl~   83 (87)
T d1s6ja_          17 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIA   83 (87)
T ss_dssp             SCSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEECHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCeEeHHHHHH
Confidence            34444445899999999999999999999999998654332  234456667889999999999986

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.93  E-value=0.00066  Score=59.81  Aligned_cols=66  Identities=15%  Similarity=0.113  Sum_probs=38.3

Q ss_pred             ceEEEEEeCCCCccchh-hhH-----HhhccCCEEEEEEeCCChhhHHHHHHhHHHHHHhcCCCCcEEEEEecccCCC
Q 010548           58 RVPVTIIDTSSSLENKG-KLN-----EELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRG  129 (507)
Q Consensus        58 ~~~~~i~Dt~G~~~~~~-~~~-----~~~~~ad~il~V~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~  129 (507)
                      +..+.++||+|...... ...     ......+-+++|.|++.+..-.+..   ....+..  + +-=++.+|.|-..
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~---~~f~~~~--~-~~~~I~TKlDe~~  163 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA---RAFDEKV--G-VTGLVLTKLDGDA  163 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH---HHHHHHT--C-CCEEEEECGGGCS
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHH---HHHHhhC--C-CCeeEEeecCccc
Confidence            45789999999754332 111     1234568999999987763322211   1111222  1 2247899999543

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.91  E-value=0.00017  Score=52.76  Aligned_cols=61  Identities=15%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             HHHHHHhhhhhcCC--CCCCCCHHHHHhhhccC-CC---CCCCCCccccccccCCCCccchHhHHhh
Q 010548          315 VEFLRGIFGLYDID--NDGAVRPAELEDLFLTA-PE---SPWDEAPYKDAAETTALGNLTLKGFVSK  375 (507)
Q Consensus       315 ~~fl~~~f~~~d~d--~dg~l~~~el~~~f~~~-p~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (507)
                      .+-|+.+|+.||.+  ++|.|+.+||..++... +.   .++....+...++.|.+|.|++++|+.+
T Consensus         4 ~eel~~~F~~fd~~~~~~G~I~~~El~~~l~~lg~~~~~~~~ei~~~~~~~D~d~dG~I~f~EF~~~   70 (76)
T d1qx2a_           4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVM   70 (76)
T ss_dssp             HHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCCCEECHHHHHHHHHHhCCcCCCCHHHHHHHHHHhhcCCCCcCcHHHHHHH
Confidence            35689999999765  46999999999999863 11   1223345677788999999999999885

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00014  Score=54.22  Aligned_cols=61  Identities=13%  Similarity=0.150  Sum_probs=49.3

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhccC--CCCCCCCCccccccccCCCCccchHhHHhhh
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTA--PESPWDEAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~~--p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      .-+.+.|+.||.+++|.|+.+|+..++...  |..+.....+...++.+.+|.|++.+|+..+
T Consensus        20 ~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~f   82 (83)
T d1wlza1          20 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF   82 (83)
T ss_dssp             HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhccccCCCCcEeHHHHHHHh
Confidence            457899999999999999999999999863  3333334445666788999999999999865

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.84  E-value=0.00045  Score=60.64  Aligned_cols=122  Identities=15%  Similarity=0.216  Sum_probs=89.2

Q ss_pred             CCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCc
Q 010548          210 DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDL  289 (507)
Q Consensus       210 d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l  289 (507)
                      .+.|+.+++...+.   ...++..+++.+.+.+....|+|    .|+++.|..+...+...+                  
T Consensus         5 ~~~l~~e~l~~l~~---~t~f~~~ei~~l~~~F~~~~~~G----~is~~EF~~~l~~~~~~~------------------   59 (201)
T d1omra_           5 SGALSKEILEELQL---NTKFTEEELSSWYQSFLKECPSG----RITRQEFQTIYSKFFPEA------------------   59 (201)
T ss_dssp             SCTHHHHHHHHHGG---GCSSCHHHHHHHHHHHHHHCTTS----EEEHHHHHHHHHHHCTTS------------------
T ss_pred             cCCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHHCcCC----CccHHHHHHHHHHhcCCC------------------
Confidence            35677777766666   45588999999999988887754    699999998765332111                  


Q ss_pred             cccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCC--CccccccccCCCCcc
Q 010548          290 ELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE--APYKDAAETTALGNL  367 (507)
Q Consensus       290 ~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~--~~~~~~~~~~~~~~~  367 (507)
                                             ....+...+|+.+|.|++|.++..|+-..++.....+...  ...-..++.+.+|.|
T Consensus        60 -----------------------~~~~~~~~if~~~D~~~~G~I~f~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i  116 (201)
T d1omra_          60 -----------------------DPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTI  116 (201)
T ss_dssp             -----------------------CCHHHHHHHHHTTTSCSSSEEEHHHHHHHHHHHHSSCGGGSHHHHHHHHCTTCSSSB
T ss_pred             -----------------------CHHHHHHHHHHHhccCCCCeEeehhHHHHHHhhcccchHHHHHHHHHHHccCCCCcc
Confidence                                   1145778999999999999999999998888754333221  223455788999999


Q ss_pred             chHhHHhhhhhh
Q 010548          368 TLKGFVSKWALM  379 (507)
Q Consensus       368 ~~~~~~~~w~~~  379 (507)
                      +.++|...-..+
T Consensus       117 s~~E~~~~~~~~  128 (201)
T d1omra_         117 SKNEVLEIVTAI  128 (201)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999987665544

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.0025  Score=59.34  Aligned_cols=30  Identities=33%  Similarity=0.476  Sum_probs=25.8

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCCCCCCCC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERPFSENYA  453 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~~~~~~~  453 (507)
                      -+|+|+|.-++|||||+|++++.++.....
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~   56 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS   56 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCC
Confidence            379999999999999999999998754443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.80  E-value=0.00027  Score=60.42  Aligned_cols=23  Identities=22%  Similarity=0.686  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.00012  Score=64.67  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      .-|+++|.||||||||+++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999985

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

Probab=96.78  E-value=0.00018  Score=54.93  Aligned_cols=68  Identities=10%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             hHHHHHHHhhhhh-cCCCCC-CCCHHHHHhhhccC-------CCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          313 EAVEFLRGIFGLY-DIDNDG-AVRPAELEDLFLTA-------PESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       313 ~~~~fl~~~f~~~-d~d~dg-~l~~~el~~~f~~~-------p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      .+.+-|..+|.+| |+|++| .|+.+|+.+++...       +..+-..+.+...++.|.+|.|++++|+.+=..++
T Consensus         6 ~~i~~l~~~F~~ya~~dg~~~~L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~l~   82 (93)
T d3c1va1           6 KALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA   82 (93)
T ss_dssp             HHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCCCeeCHHHHHHHHHHhchhccccCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence            4678899999999 677666 59999999999752       12222234456668999999999999998655543

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.74  E-value=0.00021  Score=61.33  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccC---CC-------CCCCCCccccccccCCCCccchHhHHhhhhhhh----
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTA---PE-------SPWDEAPYKDAAETTALGNLTLKGFVSKWALMT----  380 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~---p~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----  380 (507)
                      ++-|+.+|+++|.+ ||.++..||++++...   |.       ++-.+..+...++.+.+|.|++++|+++|....    
T Consensus         3 ~~~~r~~F~~~d~~-dg~I~~~EL~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~d~d~~g~i~~~ef~~~~~~~~~~~~   81 (173)
T d1alva_           3 VRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQA   81 (173)
T ss_dssp             HHHHHHHHHHHHGG-GTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHhCCCcchhhhccCCHHHHHHHHHHhccCCCCcccchhhhhhhhhhhHHHH
Confidence            45689999999955 8999999999999752   11       112234455667889999999999999998775    


Q ss_pred             -----------hcCHHHHHHHHHhhCCC
Q 010548          381 -----------LLDPRHSLANLIYVGYG  397 (507)
Q Consensus       381 -----------~~d~~~~l~~l~~lg~~  397 (507)
                                 .++..+....|...|+.
T Consensus        82 ~f~~~D~d~~G~I~~~el~~~L~~~g~~  109 (173)
T d1alva_          82 IYKQFDVDRSGTIGSSELPGAFEAAGFH  109 (173)
T ss_dssp             HHHHHCTTCCSSBCTTTHHHHHHHHTCC
T ss_pred             HHHHhccCCCCeecHHHHHHHHHHHHHh
Confidence                       44555555555555544

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=96.73  E-value=0.0022  Score=46.11  Aligned_cols=70  Identities=21%  Similarity=0.296  Sum_probs=58.2

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      +.++-...++++|..+|.+.+|.++..++....+. ++..++..++..+.+.+..     -.++.|+++.|+.++.
T Consensus         2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~s~~~~~~~~~~~D~-----d~~g~I~f~eF~~~m~   71 (73)
T d2pq3a1           2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDA-----DGNGTIDFPEFLTMMA   71 (73)
T ss_dssp             CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHH-TTCCCCHHHHHHHHHHHCT-----TCSSEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhCC-----CCCCeEeHHHHHHHHh
Confidence            34566678999999999999999999999988877 5788899888888877743     2478999999999865

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00017  Score=55.85  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=52.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ..++.++|+.+|+|++|.++.+|+.++|.....++.........+++|.+|.|++++|...=+++
T Consensus        10 ~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li   74 (99)
T d1qjta_          10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV   74 (99)
T ss_dssp             CTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH
Confidence            45888999999999999999999999999765444333445566789999999999997744433

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.67  E-value=0.003  Score=46.37  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=58.7

Q ss_pred             cccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          189 TLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       189 ~~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      .+.++-...++++|..+|.+.+|.++.+|+....+. .+..+++.+++.+...+.   +  ..++.|+++.|+.++.
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~s~~e~~~~~~~~D---~--d~~g~I~~~eF~~~m~   77 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRM-LGQNPTKEELDAIIEEVD---E--DGSGTIDFEEFLVMMV   77 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHHHC---T--TCCSSEEHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHH-cCCCCCHHHHHHHHHHhC---C--CCCCeEeHHHHHHHHH
Confidence            356667778999999999999999999999998876 588999998887776653   2  2366899999999876

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0003  Score=54.33  Aligned_cols=57  Identities=30%  Similarity=0.423  Sum_probs=42.7

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccC------CCCCCC------------CCccccccccCCCCccchHhHHh
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTA------PESPWD------------EAPYKDAAETTALGNLTLKGFVS  374 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~------p~~p~~------------~~~~~~~~~~~~~~~~~~~~~~~  374 (507)
                      ++.+|..||.|+||.|+.+||..++...      ...+-.            ...+...+++|.+|.|++++|++
T Consensus        18 ~r~~F~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~~   92 (99)
T d1snla_          18 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLA   92 (99)
T ss_dssp             HHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence            5789999999999999999999998631      111110            01133446899999999999986

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=96.63  E-value=0.00054  Score=56.55  Aligned_cols=72  Identities=21%  Similarity=0.372  Sum_probs=55.6

Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC-C-CCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP-W-DEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p-~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      .||+.=+.-|+.+|..+|.|++|.|+.+|+..++......| . ....+...++.+.+|.|++++|++.+....
T Consensus         2 ~lt~~e~~~l~~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~   75 (146)
T d1exra_           2 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKM   75 (146)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Confidence            36677777899999999999999999999999998643222 1 123345557789999999999999875543

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00026  Score=60.65  Aligned_cols=79  Identities=20%  Similarity=0.367  Sum_probs=59.6

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccCCC----CC---CCCCccccccccCCCCccchHhHHhhhhhhh----------
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPE----SP---WDEAPYKDAAETTALGNLTLKGFVSKWALMT----------  380 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~p~----~p---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----------  380 (507)
                      |+.+|++++ ++||.|+..||+.++.....    .|   -.+..+...++.|.+|.|++++|+.+|....          
T Consensus         9 ~~~~F~~~~-~~dG~Is~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~~~D~d~~G~I~f~EF~~~~~~~~~~~~~f~~~D   87 (172)
T d1juoa_           9 LYGYFAAVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFD   87 (172)
T ss_dssp             THHHHHHHH-TTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC-CCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHCCCCCCceehHHHHHHHHhhhhhhHHHHHhC
Confidence            788999997 88999999999999885322    22   2234456678899999999999999997665          


Q ss_pred             -----hcCHHHHHHHHHhhCCC
Q 010548          381 -----LLDPRHSLANLIYVGYG  397 (507)
Q Consensus       381 -----~~d~~~~l~~l~~lg~~  397 (507)
                           .+++.+....|..+|+.
T Consensus        88 ~d~sG~i~~~El~~~l~~~g~~  109 (172)
T d1juoa_          88 TDRSGTVDPQELQKALTTMGFR  109 (172)
T ss_dssp             TTCCSEECHHHHHHHHHHTTCC
T ss_pred             cCCCCcCCHHHHHHHHHHHHHh
Confidence                 55666666666666654

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=96.56  E-value=0.0002  Score=54.13  Aligned_cols=69  Identities=17%  Similarity=0.273  Sum_probs=53.4

Q ss_pred             HhHHHHHHHhhhhh-cCCCCC-CCCHHHHHhhhcc-CCC-CCCC---CCccccccccCCCCccchHhHHhhhhhhh
Q 010548          312 SEAVEFLRGIFGLY-DIDNDG-AVRPAELEDLFLT-APE-SPWD---EAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       312 ~~~~~fl~~~f~~~-d~d~dg-~l~~~el~~~f~~-~p~-~p~~---~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      +.++.-+..+|.+| |+|+|| .|+..|++.++.. .|. ..+.   ...+...++.|.+|.|++++|+.+=..++
T Consensus         5 E~ai~~ii~vF~kya~~dg~~~~ls~~Elk~Ll~~e~~~~~~~~~~~~~~~~~~lD~d~Dg~IdF~EF~~l~~~la   80 (89)
T d1k8ua_           5 DQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGALA   80 (89)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCCCeecHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence            35778899999999 899999 5999999999986 232 2222   23455667899999999999998765554

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.54  E-value=0.0005  Score=58.66  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=21.0

Q ss_pred             EEEEEecCCCCchHHHHHHHhcC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999863

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

Probab=96.53  E-value=0.0006  Score=51.12  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=53.3

Q ss_pred             HhHHHHHHHhhhhh-cCCCCCC-CCHHHHHhhhcc-CCC--CCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          312 SEAVEFLRGIFGLY-DIDNDGA-VRPAELEDLFLT-APE--SPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       312 ~~~~~fl~~~f~~~-d~d~dg~-l~~~el~~~f~~-~p~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      +.+++-+..+|.+| |+|++|. ++.+|+.+++.. .|.  .+-....+...++.|.+|.|++++|+.+=..++
T Consensus         6 E~ai~~ii~~F~kya~~dG~~~~l~~~Elk~ll~~e~~~~~~~~~v~~i~~~~D~n~DG~IdF~EF~~l~~~la   79 (87)
T d1xk4a1           6 EKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMG   79 (87)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCCCCCccCHHHHHHHHHHhcCCccchHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence            45778899999999 8999985 699999999875 343  223345566778999999999999998755443

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=96.51  E-value=0.0007  Score=58.40  Aligned_cols=82  Identities=23%  Similarity=0.252  Sum_probs=62.3

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhccCC--CCCCCCCccccccccCCCCccchHhHHhhhhhhh-------------
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAP--ESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT-------------  380 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-------------  380 (507)
                      +-|.++|+.+|+|+||.|+.+|+..++....  ..+.....+...++.+.+|.|++.+|+..|....             
T Consensus        18 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~l~~~~s~~~~~~l~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~F~~~D~~~   97 (182)
T d1y1xa_          18 QELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSSG   97 (182)
T ss_dssp             SCHHHHHHHHCTTCSSSBCHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHHHhcccCchhhhhhhhccccccccccccccccccccccccccccchhcccccc
Confidence            3589999999999999999999999987642  2233344455667889999999999999887644             


Q ss_pred             --hcCHHHHHHHHHhhCCC
Q 010548          381 --LLDPRHSLANLIYVGYG  397 (507)
Q Consensus       381 --~~d~~~~l~~l~~lg~~  397 (507)
                        .+++.+..+.+..+|..
T Consensus        98 ~g~I~~~el~~~l~~~g~~  116 (182)
T d1y1xa_          98 DGRLDSNEVRAALLSSGYQ  116 (182)
T ss_dssp             SSCBCHHHHHHHHHTTSCC
T ss_pred             chhhhhHHHHHHHHHhCCc
Confidence              56666666666666654

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=96.46  E-value=0.00034  Score=56.73  Aligned_cols=63  Identities=14%  Similarity=0.187  Sum_probs=49.8

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      ..++|+.+|.|+||.|+.+|+..++......+  -....+...++.+.+|.|++++|++.|....
T Consensus         2 ae~~F~~~D~d~dG~is~~E~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~Ef~~~~~~~~   66 (134)
T d1jfja_           2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQ   66 (134)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSS
T ss_pred             HHHHHHHHcCCCcCCCcHHHHHHHHHHcCCCCCHHHHHHHHHHhhhccccccccccccccccccc
Confidence            35799999999999999999999998754333  1123345667889999999999999886544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.44  E-value=0.00081  Score=56.93  Aligned_cols=26  Identities=35%  Similarity=0.675  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ++.++|+|.|+|||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            56789999999999999999999764

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.40  E-value=0.0017  Score=53.38  Aligned_cols=68  Identities=21%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             cCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       310 ~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ||+.-++=++.+|..||.|++|.|+.+|+..++......|-. ..+.. +..+.+|.|++++|+.++...
T Consensus         1 L~~~qi~e~~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~-~el~~-~~~~~~~~i~~~eF~~~~~~~   68 (142)
T d1wdcb_           1 LPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDD-KELTA-MLKEAPGPLNFTMFLSIFSDK   68 (142)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCH-HHHHH-HHTTSSSCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCcCChHHHHHHHHHhhcCCCH-HHHHH-HHHhccCcccccccccccccc
Confidence            577888899999999999999999999999999875444411 11111 223678999999999987643

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.40  E-value=0.00057  Score=58.39  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -+|+|+|.+|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.0029  Score=54.63  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=84.7

Q ss_pred             ccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccc
Q 010548          212 ALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLEL  291 (507)
Q Consensus       212 ~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~  291 (507)
                      .++.+++...++.   ...+..+|+.+.+.+.+..|+    +.++.+.|..+...+...+.                   
T Consensus         7 ~l~~e~l~~l~~~---t~fs~~Ei~~l~~~F~~~~~~----G~i~~~ef~~~~~~~~~~~~-------------------   60 (190)
T d1fpwa_           7 KLSKDDLTCLKQS---TYFDRREIQQWHKGFLRDCPS----GQLAREDFVKIYKQFFPFGS-------------------   60 (190)
T ss_dssp             CSTTHHHHHHTTT---CCSTHHHHHHHHHHHHHHCTT----CCEEHHHHHHHHHHHCTTSC-------------------
T ss_pred             CCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHHCCC----CCccHHHHHHHHHHHCCCCC-------------------
Confidence            3556666554432   357789999999988877765    46788888776443221111                   


Q ss_pred             cCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-CCCCCC-CCccccccccCCCCccch
Q 010548          292 RDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PESPWD-EAPYKDAAETTALGNLTL  369 (507)
Q Consensus       292 ~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-p~~p~~-~~~~~~~~~~~~~~~~~~  369 (507)
                                            ..++..++|+.+|.++||.++..|+-..++.. +..+.. ....-..++.|.+|.|+.
T Consensus        61 ----------------------~~~~~~~if~~~D~~~~G~I~~~Ef~~~~~~~~~~~~~e~~~~~F~~~D~d~dG~is~  118 (190)
T d1fpwa_          61 ----------------------PEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITF  118 (190)
T ss_dssp             ----------------------CSHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCSSEEEH
T ss_pred             ----------------------hHHHHHHHHHHhCcCCCCcccHHHHHHHHHHHccCchHHHHHHHHHHhccCCCCcCcH
Confidence                                  13577899999999999999999999998863 444432 233446678999999999


Q ss_pred             HhHHhhhhhh
Q 010548          370 KGFVSKWALM  379 (507)
Q Consensus       370 ~~~~~~w~~~  379 (507)
                      +++..+...+
T Consensus       119 ~E~~~~~~~~  128 (190)
T d1fpwa_         119 DEMLTIVASV  128 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988765544

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.31  E-value=0.0011  Score=57.46  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ++.++|+|+|+|||||||+...|...
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999853

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=96.28  E-value=0.002  Score=45.64  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ..++++|..+|.+.+|.++.+|++...+.....+++..+++.+.+.+.   +  ..++.|+++.|+.++.
T Consensus         2 eel~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D---~--d~dG~i~~~EF~~~m~   66 (68)
T d1c7va_           2 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEAD---E--DGNGVIDIPEFMDLIK   66 (68)
T ss_dssp             HHHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHC---S--SGGGSEEHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---C--CCCCcEeHHHHHHHHH
Confidence            357889999999999999999999999888777899988888776653   2  2478999999999864

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0036  Score=53.14  Aligned_cols=119  Identities=12%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             ccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhcc--CCccCCCcchhhHHHHHHHHHHcCCccchhHHHhh
Q 010548          205 CDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH--DGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRK  282 (507)
Q Consensus       205 ~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~  282 (507)
                      +|.+.+|.++-.|+......      ....++.-...+.....  +...++.|++++|..+...+..  |          
T Consensus        16 ~d~n~dG~Is~~el~k~l~~------~~~~~~~~~~~~~~~~~~~D~~~~~~i~F~eF~~~~~~l~~--r----------   77 (170)
T d2zkmx1          16 MQLNSEGKIPVKNFFQMFPA------DRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCP--R----------   77 (170)
T ss_dssp             HSCCTTSCEEHHHHHHHSCS------CHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHSC--C----------
T ss_pred             cccCCCCCCcHHHHHHHHHH------hhhhHHHHHHHHhhhhccccccCCCccCHHHHHHHHhccCC--H----------
Confidence            79999999999998655422      22334443334433222  2334678999999999764431  1          


Q ss_pred             ccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCC---------
Q 010548          283 FGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA---------  353 (507)
Q Consensus       283 ~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~---------  353 (507)
                                                       +-+..+|..||.|++|.|+.+||.+.+......|+.++         
T Consensus        78 ---------------------------------~ei~~~F~~~d~d~~~~it~~el~~fL~~~Q~~~~~~e~~~~~~~~~  124 (170)
T d2zkmx1          78 ---------------------------------PEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPD  124 (170)
T ss_dssp             ---------------------------------HHHHTTCC--------CCCHHHHHHHHHHTCC---------------
T ss_pred             ---------------------------------HHHHHHHHHHcCCCCCcccHHHHHHHHHHHhcchhhhhhccccCCHH
Confidence                                             23667899999999999999999999987766553321         


Q ss_pred             ---ccccccc----cCCCCccchHhHHh
Q 010548          354 ---PYKDAAE----TTALGNLTLKGFVS  374 (507)
Q Consensus       354 ---~~~~~~~----~~~~~~~~~~~~~~  374 (507)
                         .+....+    ....|.|+++||..
T Consensus       125 ~~~~~i~~~~~~~~~~~~~~ls~d~F~~  152 (170)
T d2zkmx1         125 QVQGLIDKYEPSGINAQRGQLSPEGMVW  152 (170)
T ss_dssp             CHHHHHHHHCCC--------CCHHHHHH
T ss_pred             HHHHHHHHHccccccccCCeECHHHHHH
Confidence               1111112    23457899998876

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0023  Score=58.98  Aligned_cols=60  Identities=20%  Similarity=0.020  Sum_probs=39.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCCCCCeeeCCc------ccCCceEEEEEeCCCCc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATESVPEKVPPVHAPTRLPPD------FYPDRVPVTIIDTSSSL   70 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~~~~~~~~~~~~~~t~~~~------~~~~~~~~~i~Dt~G~~   70 (507)
                      +..-|+|+|+.++|||+|+|+|.+..+.-.........|..+-      ....+..+.++||.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            3456899999999999999999987643222222222222211      22456789999999975

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.23  E-value=0.0011  Score=55.93  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ..+|+|+|.|||||||+.++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999753

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.18  E-value=0.0013  Score=54.80  Aligned_cols=87  Identities=17%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             cCHhHHHHHHHhhhhhcC--CCCCCCCHHHHHhhhccCCCCCCCC--CccccccccCCCCccchHhHHhhhhhhhh---c
Q 010548          310 LASEAVEFLRGIFGLYDI--DNDGAVRPAELEDLFLTAPESPWDE--APYKDAAETTALGNLTLKGFVSKWALMTL---L  382 (507)
Q Consensus       310 ~s~~~~~fl~~~f~~~d~--d~dg~l~~~el~~~f~~~p~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~---~  382 (507)
                      ||+.-++-|+.+|..||.  ++||.|+.+|+..++......|=..  ..+ .....+.+|.|++++|+.+|.....   .
T Consensus         1 Ls~eqi~~l~~~F~~fD~~~~~dG~I~~~el~~~l~~lG~~~t~~e~~~~-~~~~~~~~~~i~~~eFl~~~~~~~~~~~~   79 (152)
T d1wdcc_           1 LSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGLMDCEQG   79 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHhccCccHhhhhhh-hhhhccccccccccccccccccccccchh
Confidence            566777789999999994  8999999999999998765555211  112 2235567889999999999976643   3


Q ss_pred             CHHHHHHHHHhhCCC
Q 010548          383 DPRHSLANLIYVGYG  397 (507)
Q Consensus       383 d~~~~l~~l~~lg~~  397 (507)
                      ......+++..+...
T Consensus        80 ~~~~l~~aF~~~D~~   94 (152)
T d1wdcc_          80 TFADYMEAFKTFDRE   94 (152)
T ss_dssp             CHHHHHHHHHTTCSS
T ss_pred             HHHhhhhhhhccccc
Confidence            344555666665544

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.12  E-value=0.0015  Score=54.02  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 010548           15 VVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~~   36 (507)
                      |+|+|.||||||||+++|....
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7889999999999999997543

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0013  Score=53.68  Aligned_cols=66  Identities=17%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      .+-|+.+|..||+|++|.|+.+|+..++......|  +....+...++.+.+|.|++.+|...+....
T Consensus         5 ~~elk~~F~~~D~~~~G~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~   72 (141)
T d2obha1           5 KQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKM   72 (141)
T ss_dssp             HHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCeEeHHHHHHHHHhcCCchhHHHHHHHHHhhccCCCCeechHHHHHHHHHHH
Confidence            46789999999999999999999999988753332  2233445556788999999999999886554

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0012  Score=55.85  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=59.6

Q ss_pred             CCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          305 DQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       305 ~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      -.-+.+|+.=++-|++.|+.+|.|++|.|+.+|+.+++... ..|+. +.+...++.+.+|.|++++|++.|....
T Consensus         5 ~~~t~ft~eei~~l~~~F~~~D~d~~G~I~~~E~~~~~~~~-~~~~~-~~l~~~~d~~~~g~i~~~EFl~~~~~~~   78 (165)
T d1auib_           5 EMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQ-QNPLV-QRVIDIFDTDGNGEVDFKEFIEGVSQFS   78 (165)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCCSEECHHHHTTSHHHH-TCTTH-HHHHHHHCTTCSSSEEHHHHHHHHGGGC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHhhhcc-CCHHH-HHHHHHHccccchhhhhhhhhhhccccc
Confidence            33457899999999999999999999999999998876542 23432 2344567889999999999999988775

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.10  E-value=0.0019  Score=36.85  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=25.5

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhcc
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLT  344 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~  344 (507)
                      +=|-.+|+.||++.||.++.+|+..++..
T Consensus         4 eELae~FRifDkNaDGyiD~eEl~~ilr~   32 (34)
T d1ctda_           4 EELANAFRIFDKNADGYIDIEELGEILRA   32 (34)
T ss_dssp             HHHHHHHHTTCCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCcccccHHHHHHHHHh
Confidence            45788999999999999999999988753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0012  Score=55.41  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~   34 (507)
                      -|+|+|.+|||||||+++|+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0048  Score=44.73  Aligned_cols=70  Identities=20%  Similarity=0.319  Sum_probs=56.3

Q ss_pred             ccHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          190 LKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      +.++-...++++|..+|.+.+|.++.+|+....+. ++..++..++..+...+.   +  ..++.|+++.|+.++.
T Consensus         4 lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~t~~e~~~~~~~~D---~--~~~g~I~~~eF~~~m~   73 (77)
T d1f54a_           4 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRS-LGLSPSEAEVNDLMNEID---V--DGNHQIEFSEFLALMS   73 (77)
T ss_dssp             CCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHH-HTCCCCHHHHHHHHHTTC---C--SSCCEEEHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHH-hCCCCCHHHHHHHHHHhC---C--CCCCeEeHHHHHHHHH
Confidence            34566677899999999999999999999999865 578888888777665553   2  2478999999999863

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=96.08  E-value=0.007  Score=44.44  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=57.3

Q ss_pred             hcccHHHHHHHHHHHhhccCC-CCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          188 QTLKPRCVRALKRIFIICDHD-MDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       188 ~~~~~~~~~~l~~~~~~~d~~-~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ..+.++-...++++|..+|.+ .+|.++..||....+ .++...+..+++.+.+.+.   ++  .++.|+++.|+.++.
T Consensus         7 ~~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~-~lg~~~t~~el~~~i~~~D---~d--~~G~I~f~eFl~im~   79 (82)
T d1wrka1           7 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMR-MLGQNPTPEELQEMIDEVD---ED--GSGTVDFDEFLVMMV   79 (82)
T ss_dssp             HHCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHH-HTTCCCCHHHHHHHHHTTC---TT--CCSSBCHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHH-HcCCCCCHHHHHHHHHHhC---CC--CCCeEeHHHHHHHHH
Confidence            346677788899999999999 489999999999885 5777788877777765542   32  367899999999976

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0073  Score=51.20  Aligned_cols=25  Identities=36%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      ++..-|+++|.|||||||++.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999965

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.00  E-value=0.0013  Score=55.94  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCchHHHHHHHhc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      =+|+|+|.||||||||++++..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999975

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.98  E-value=0.0021  Score=55.66  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=23.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      +.+.++|+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            345689999999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.85  E-value=0.0021  Score=54.85  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0016  Score=53.64  Aligned_cols=73  Identities=18%  Similarity=0.332  Sum_probs=53.1

Q ss_pred             eecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCC--ccccccccCCCCccchHhHHhhhhhhh
Q 010548          308 VELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEA--PYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       308 ~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      ..||+.-++-|+++|+.||.|++|.|+.+|+..++......|....  ........+..+.+++.+|+.......
T Consensus         2 ~~ls~~~i~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (146)
T d1lkja_           2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQL   76 (146)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCSSSCCEEEHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCcccccHHHHHHHHHHhh
Confidence            3578888999999999999999999999999999987544443211  122223456667788888877655443

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=95.77  E-value=0.014  Score=42.51  Aligned_cols=67  Identities=21%  Similarity=0.317  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ++-...++++|..+|.+.+|.++..|+....+.. + ..+..+++.+.+.+   -++  .++.|+++.|+.++.
T Consensus         2 ~ee~~e~~~~F~~~D~d~~G~I~~~El~~~l~~l-g-~~~~~ei~~~~~~~---D~d--~~G~I~~~EF~~~~~   68 (81)
T d2opoa1           2 PQDIADRERIFKRFDTNGDGKISSSELGDALKTL-G-SVTPDEVRRMMAEI---DTD--GDGFISFDEFTDFAR   68 (81)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTT-T-TCCHHHHHHHHHHH---CTT--CSSEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHh-h-cCCHHHHHHHHHHh---CCC--CCCeEeHHHHHHHHH
Confidence            4566788999999999999999999999998776 4 35777766655544   333  378999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.75  E-value=0.0022  Score=55.32  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ++++|+|+|+||+||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999988754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.70  E-value=0.0026  Score=54.46  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ++|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999864

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.69  E-value=0.0047  Score=50.69  Aligned_cols=68  Identities=18%  Similarity=0.265  Sum_probs=50.7

Q ss_pred             CHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhh
Q 010548          311 ASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       311 s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      |+.-++-|+..|+.||.|++|.|+.+|+..++......|-... ....+..+.+|.|++.+|+..+...
T Consensus         2 ~~~qi~el~e~F~~~D~~~~G~I~~~e~~~~l~~lg~~~~~~~-~~~~~~~~~~g~i~~~eF~~~~~~~   69 (145)
T d2mysb_           2 DETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNE-ELDAMIKEASGPINFTVFLTMFGEK   69 (145)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhCCCcchHH-HHHHHHHhccCceeechhhhhhhhc
Confidence            4455677899999999999999999999999987543331111 2233445678999999999988553

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0044  Score=47.37  Aligned_cols=30  Identities=17%  Similarity=0.132  Sum_probs=25.2

Q ss_pred             hHHHHHHHhhhhhcCCCCCCCCHHHHHhhh
Q 010548          313 EAVEFLRGIFGLYDIDNDGAVRPAELEDLF  342 (507)
Q Consensus       313 ~~~~fl~~~f~~~d~d~dg~l~~~el~~~f  342 (507)
                      .-.+.+..+|+.+|.|+||.||.+|.....
T Consensus        65 ~~~~~v~~~~~~~D~d~DG~Is~~EF~~~~   94 (99)
T d1snla_          65 ERLRMREHVMKNVDTNQDRLVTLEEFLAST   94 (99)
T ss_dssp             HHHHHHHHHHHHTCSSCSSEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence            344677899999999999999999987653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.67  E-value=0.0029  Score=53.31  Aligned_cols=26  Identities=15%  Similarity=0.291  Sum_probs=22.6

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhcC
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      ++.++|++.|.|||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            34589999999999999999998753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.65  E-value=0.0029  Score=54.10  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.62  E-value=0.0039  Score=52.57  Aligned_cols=27  Identities=19%  Similarity=0.372  Sum_probs=22.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhc
Q 010548            8 SSRTGVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus         8 ~~~~~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      ...+.+-|.|+|.|||||||+.+.|..
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999988874

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.61  E-value=0.017  Score=40.40  Aligned_cols=62  Identities=23%  Similarity=0.268  Sum_probs=51.9

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      .+++|..+|.+.+|.++..|+....+. ++..+++.+++.+.+.+..     ..++.|+++.|+.++.
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~l~~-lg~~~~~~~i~~~~~~~D~-----d~dg~I~~~EF~~~m~   64 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREVALA-FSPYFTQEDIVKFFEEIDV-----DGNGELNADEFTSCIE   64 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHH-TCTTSCHHHHHHHHHHHCC-----SSSSEECHHHHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHHHHH-hccccchHHHHHHHHHhCC-----CCCCeEeHHHHHHHHH
Confidence            578899999999999999999998875 5778889888887777632     2477899999999875

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.027  Score=42.39  Aligned_cols=69  Identities=22%  Similarity=0.287  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          192 PRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       192 ~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      ++-.+.++.+|..+|.+.+|.++.+|+..+..+   ..++...++.+.+.+..     ..++.|++++|+..+.+..
T Consensus         6 ~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~---~~l~~~~l~~i~~~~D~-----d~dG~l~~~EF~~am~Li~   74 (95)
T d1c07a_           6 PAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLK---TGLPSTLLAHIWSLCDT-----KDCGKLSKDQFALAFHLIS   74 (95)
T ss_dssp             SHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHT---TTCCHHHHHHHHHHHCT-----TCSSSEETTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHh---cCCCHHHHHHHHHHhCC-----CCCCeEcHHHHHHHHHHHH
Confidence            445567889999999999999999999998876   35778888877776632     2578999999998776543

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

Probab=95.54  E-value=0.0022  Score=59.93  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=59.4

Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC-CC-CCccccccccCCCCccchHhHHhhhhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP-WD-EAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p-~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      .||..-...++++|.++|.|++|.|+.+|+..++......+ +. ...+...++.+.+|.|++.+|++.|....
T Consensus       115 ~l~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~  188 (321)
T d1ij5a_         115 MLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLA  188 (321)
T ss_dssp             CCCHHHHHHHHHHHTSSSSTTSSCCCHHHHHHHHHHHHTTSCSSHHHHHHHHHHHCCSSTHHHHHHTTSHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHcCCcccHHHHHHHHHHHhhcCCccccchhhhhhhhhhh
Confidence            67888899999999999999999999999999987643222 22 34456678899999999999999997665

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0035  Score=54.98  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      =|+|+|++|||||||+++|+...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999998653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0037  Score=53.42  Aligned_cols=24  Identities=25%  Similarity=0.536  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      .++|+|+|+|||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=0.0026  Score=54.52  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.1

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      |+++|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999855

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.50  E-value=0.0061  Score=52.12  Aligned_cols=90  Identities=12%  Similarity=0.089  Sum_probs=65.0

Q ss_pred             eecCHhHHHHHHHhhhhhcCC--CCCCCCHHHHHhhhccCCCCCCC-CCccccccccCCCCccchHhHHhhh-hhhhhcC
Q 010548          308 VELASEAVEFLRGIFGLYDID--NDGAVRPAELEDLFLTAPESPWD-EAPYKDAAETTALGNLTLKGFVSKW-ALMTLLD  383 (507)
Q Consensus       308 ~~~s~~~~~fl~~~f~~~d~d--~dg~l~~~el~~~f~~~p~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~w-~~~~~~d  383 (507)
                      +.+|+.-++.|+.+|..+|.+  ++|.++.+|+..++...+..|.. .......++++.+|.|++.+|++.. .......
T Consensus         9 t~Fs~~ei~~L~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~dg~I~f~EFl~~l~~~~~~~~   88 (183)
T d2zfda1           9 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAP   88 (183)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTSSSCSSSBCHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSC
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCCCCCcCcHHHHHHHHHhcCCCCCHHHHHHHHHHccCCCCcCcHHHHHHHHHhhhccCc
Confidence            468889999999999999976  69999999999998766554432 2334566788999999999999854 4434445


Q ss_pred             HHHHHHHH-HhhCCC
Q 010548          384 PRHSLANL-IYVGYG  397 (507)
Q Consensus       384 ~~~~l~~l-~~lg~~  397 (507)
                      ...-++.+ ..+...
T Consensus        89 ~~~~~~~~F~~~D~d  103 (183)
T d2zfda1          89 IDDKIHFSFQLYDLK  103 (183)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhcccccC
Confidence            55444433 444433

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.49  E-value=0.016  Score=41.50  Aligned_cols=64  Identities=22%  Similarity=0.302  Sum_probs=53.0

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ..++++|..+|.+.+|.++..|+...++. .+..++..+++.+.+.+.   ++  .++.|+++.|+.+++
T Consensus         9 eel~~~F~~fD~~~~G~I~~~el~~~l~~-lg~~~~~~e~~~~~~~~D---~d--~dg~I~~~EF~~~m~   72 (75)
T d1jc2a_           9 EELANCFRIFDKNADGFIDIEELGEILRA-TGEHVIEEDIEDLMKDSD---KN--NDGRIDFDEFLKMME   72 (75)
T ss_dssp             HHHHHHHHHHCCSTTSSEEHHHHHHHHHH-SSSCCCHHHHHHHHHHHC---SS--SCSEECHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHHHHh-cCCCccHHHHHHHHHHhC---CC--CCCcEeHHHHHHHHH
Confidence            45788999999999999999999999866 678999998877766542   22  367999999999865

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.49  E-value=0.048  Score=46.40  Aligned_cols=121  Identities=14%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccc
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLET  275 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~  275 (507)
                      ..+.++|..+|.+.+|.++..|+-.......... ....+..+.+.+     +...++.|+.+.|..+...+..      
T Consensus        58 ~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~~~~~~-~~~~~~~~F~~~-----D~d~~g~i~~~E~~~~~~~~~~------  125 (189)
T d1jbaa_          58 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGT-LEHKLKWTFKIY-----DKDRNGCIDRQELLDIVESIYK------  125 (189)
T ss_dssp             HHHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCC-CTHHHHHHHHHH-----CSSCSSCBCHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHhccCCCCeEeehhHHHHHHhhcccc-hHHHHHHHHhhh-----ccCCCCcccHhHHHHHHHHHHH------
Confidence            4567889999999999999999988877765433 344455444443     2335778999998877653321      


Q ss_pred             hhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          276 TWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       276 ~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                         ............              .....++  ..+....+|..+|.|+||.|+-+|..++.+..|.
T Consensus       126 ---~~~~~~~~~~~~--------------~~~~~~~--~e~~~~~if~~~D~d~dG~Is~~EF~~~~~~~p~  178 (189)
T d1jbaa_         126 ---LKKACSVEVEAE--------------QQGKLLT--PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKW  178 (189)
T ss_dssp             ---HHHHSSCCTTSS--------------TTTCCCC--HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTT
T ss_pred             ---hhccccccchhh--------------hhccccc--hHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHH
Confidence               111111111000              0001111  3467789999999999999999999988886663

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.48  E-value=0.0033  Score=51.35  Aligned_cols=78  Identities=17%  Similarity=0.231  Sum_probs=55.3

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCCCccccccccCCCCccchHhHHhhhhhhhh----cCHHHHHHHHHh
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL----LDPRHSLANLIY  393 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~----~d~~~~l~~l~~  393 (507)
                      +++.|..||+|+||.|+.+|+..++......|-. .. ...+..+.+|.|++++|+..+.....    -++....+++..
T Consensus         7 fke~F~~~D~d~dG~I~~~el~~~l~~lg~~~t~-~e-i~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~   84 (140)
T d1ggwa_           7 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTL-AE-ITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQV   84 (140)
T ss_dssp             THHHHHHTCSSSSSEECHHHHHHHHHHTSCCCCH-HH-HHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCeECHHHHHHHHHHHHhhhHH-Hh-hhhhhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHHH
Confidence            4899999999999999999999999876544421 11 22346688899999999998764432    234455556655


Q ss_pred             hCCC
Q 010548          394 VGYG  397 (507)
Q Consensus       394 lg~~  397 (507)
                      +.-.
T Consensus        85 ~D~d   88 (140)
T d1ggwa_          85 FDKD   88 (140)
T ss_dssp             TCSS
T ss_pred             Hhcc
Confidence            5444

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0034  Score=53.51  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      +||+|+|+|||||||+.++|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.46  E-value=0.0033  Score=52.63  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 010548           15 VVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~   35 (507)
                      |+|.|+|||||||+.++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.46  E-value=0.0044  Score=53.51  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      +...|+|+|+||+||||+.++|...
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.41  E-value=0.0031  Score=52.88  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      .||+++|.|||||||+.+++...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.40  E-value=0.0035  Score=52.73  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 010548           15 VVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~   34 (507)
                      +.|+|.+|||||||+++|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999975

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.02  Score=41.77  Aligned_cols=38  Identities=13%  Similarity=0.077  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCH
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQP  232 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~  232 (507)
                      ....+.+.|..+|.+.+|.++.+|++..+... +.++++
T Consensus        18 ~~~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~-~~~l~~   55 (83)
T d1wlza1          18 HYHAITQEFENFDTMKTNTISREEFRAICNRR-VQILTD   55 (83)
T ss_dssp             THHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-TCCCCH
T ss_pred             HHHHHHHHHHHHCCCCCceEChhHHHHHHHHh-CCCCCh
Confidence            45678899999999999999999998766543 334443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0038  Score=51.64  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0037  Score=52.29  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=18.7

Q ss_pred             EEEecCCCCchHHHHHHHhc
Q 010548          426 CLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~  445 (507)
                      ++|+|.+|+|||||+++++.
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999984

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.30  E-value=0.0062  Score=49.80  Aligned_cols=63  Identities=14%  Similarity=0.236  Sum_probs=44.2

Q ss_pred             HHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC---CCCCccccc-cccCCCCccchHhHHhhhhh
Q 010548          316 EFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP---WDEAPYKDA-AETTALGNLTLKGFVSKWAL  378 (507)
Q Consensus       316 ~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p---~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~  378 (507)
                      +=|+.+|+.||.|++|.|+.+|+..++......|   +....+... .+.+.+|.|++++|......
T Consensus         4 eelke~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~e~~~~~~~~~~d~~~~g~i~~~eF~~~~~~   70 (145)
T d2mysc_           4 DDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQA   70 (145)
T ss_pred             HHHHHHHHHHcCCCCCeECHHHHHHHHHHhhhcchhhhhHHHHHHHhhcccccCccchhHHHHHHhh
Confidence            4578999999999999999999999987643222   222222221 23345789999999887644

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.04  Score=41.08  Aligned_cols=69  Identities=20%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      .++-.+.++.+|..+|.+.+|.++.+|+..+..+.   .++..+++.|-+.+.     ...++.|++++|...+.+.
T Consensus         4 s~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~---~l~~~~l~~i~~~~D-----~d~dG~l~~~EF~~a~~li   72 (92)
T d1fi6a_           4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS---KLPILELSHIWELSD-----FDKDGALTLDEFCAAFHLV   72 (92)
T ss_dssp             CHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH---SSCHHHHHHHHHHHC-----TTCSSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHc---cCCHHHHHHHHHHhC-----CCCCCeecHHHHHHHHHHH
Confidence            45556778899999999999999999999998873   477777777777653     2357899999998655543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.17  E-value=0.005  Score=52.95  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      +.+||+++|+||+||||....+..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999998874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.16  E-value=0.0057  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      =|+|+|++|||||||++.|....
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            37899999999999999998653

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=95.16  E-value=0.024  Score=41.23  Aligned_cols=64  Identities=19%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ..|+.+|..+|.+.+|.++..|++...+. ++..++..+++.+...+   -++  .++.|+++.|+.+++
T Consensus        15 e~l~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~ev~~~~~~~---D~d--~dg~I~~~EF~~~m~   78 (81)
T d1fi5a_          15 EELSDLFRMFDKNADGYIDLEELKIMLQA-TGETITEDDIEELMKDG---DKN--NDGRIDYDEFLEFMK   78 (81)
T ss_dssp             HHHHHHHHHHCSSCSSEECHHHHHHHHHT-SSSCCCHHHHHHHHHHH---CSS--SSSSEEHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHH---CCC--CCCcEeHHHHHHHHH
Confidence            45788999999999999999999999865 67888988887776544   222  477899999998864

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=95.16  E-value=0.0014  Score=56.42  Aligned_cols=71  Identities=21%  Similarity=0.295  Sum_probs=54.0

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCC--CCCCccccccccCCCCccchHhHHhhhhhhhhcCHH
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESP--WDEAPYKDAAETTALGNLTLKGFVSKWALMTLLDPR  385 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~d~~  385 (507)
                      +.-|+.+|+.+|.|+||.|+.+|+..++......|  .....+...++.+.+|.|++.+|+..|.........
T Consensus         9 i~~l~~~F~~~D~d~dG~Is~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~   81 (182)
T d1s6ia_           9 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLERE   81 (182)
T ss_dssp             TCSHHHHHHTTSSSSSSCEEHHHHHHHHTTTTCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHHTTSSSSCCC
T ss_pred             HHHHHHHHHHHcCCCcCCCCHHHHHHHHHHcCCccccccchhhhhhhhccccccchHHHHHHHHHhhcccccH
Confidence            33488999999999999999999999998753333  112334455678889999999999988776654433

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.017  Score=52.91  Aligned_cols=61  Identities=15%  Similarity=0.049  Sum_probs=40.8

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcCCCCCC-----CCCCccceeEEEEEEcCCCeEEEEEEecCCch
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLERPFSEN-----YAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE  483 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~  483 (507)
                      ++.=|+|+|+.++|||+|+|++++..+.-.     ...|.|.-.....+ ..+....+.++||-|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            456789999999999999999998774321     12344433222222 23456678899998863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.13  E-value=0.005  Score=52.33  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      +||+|+|+||+||||+.+.+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988754

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.12  E-value=0.015  Score=40.43  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~  264 (507)
                      ..++++|..+|.+.+|.++.+|+....+ .++..+++.+++.+.+.+.   ++  .++.|+++.|+.++
T Consensus         3 eel~~aF~~fD~d~~G~I~~~el~~~l~-~lg~~~~~~e~~~l~~~~D---~d--~~g~I~~~eF~~~m   65 (65)
T d1fw4a_           3 EEIREAFRVFDKDGNGYISAAELRHVMT-NLGEKLTDEEVDEMIREAD---ID--GDGQVNYEEFVQMM   65 (65)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHH-HTTCCCCHHHHHHHHHTTC---TT--CSSSEEHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCCCcCCHHHHHHHHH-HhCCCCCHHHHHHHHHHcC---CC--CCCcEeHHHHHHHC
Confidence            3578999999999999999999988765 4578888888877766543   22  47899999999873

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.0051  Score=57.94  Aligned_cols=24  Identities=38%  Similarity=0.497  Sum_probs=21.9

Q ss_pred             CceEEEEEecCCCCchHHHHHHHh
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFL  444 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~  444 (507)
                      .+.++|.|.|+||||||||+++++
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            346899999999999999999997

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.09  E-value=0.0022  Score=52.73  Aligned_cols=62  Identities=19%  Similarity=0.268  Sum_probs=45.0

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCCC--C-ccccccccCCCCccchHhHHhhhhhh
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE--A-PYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~~--~-~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      ++.+|+.||.|++|.|+.+|+.+++......|...  . .+......+.+|.|++.+|..++...
T Consensus         4 ~k~~F~~~D~d~~G~I~~~el~~~l~~lg~~~s~~ei~~l~~~~~~~~~~~~i~~~ef~~~~~~~   68 (146)
T d1m45a_           4 NKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVN   68 (146)
T ss_dssp             CTTCHHHHCTTCCSEEEGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcCCCCHHHHHHHHHHcCCchhHHHHhhhhccccccccccccccchhhhhhhhh
Confidence            46789999999999999999999998765555332  1 22244455667899999999988654

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.08  E-value=0.0075  Score=50.24  Aligned_cols=71  Identities=15%  Similarity=0.309  Sum_probs=54.9

Q ss_pred             ecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC--CCccccccccCCCCccchHhHHhhhhhh
Q 010548          309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD--EAPYKDAAETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       309 ~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      -||+.=+.-|+..|+.+|.|++|.|+.+|+..++......+..  ...+...++.+.+|.+++.+|+..|...
T Consensus        13 ~ls~~~i~el~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~~~   85 (162)
T d1topa_          13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ   85 (162)
T ss_dssp             HSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHhccCCchhHHHHHhhhheeccCCCCCeeeehhhhhhhhh
Confidence            5777777789999999999999999999999988865443322  2224455677889999999998877544

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0056  Score=51.68  Aligned_cols=21  Identities=38%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~   34 (507)
                      .|.|.|++|+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0078  Score=51.34  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 010548           15 VVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~   35 (507)
                      |+|+|++||||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999864

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.01  E-value=0.014  Score=45.16  Aligned_cols=29  Identities=34%  Similarity=0.495  Sum_probs=23.6

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHh
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQV  223 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~  223 (507)
                      ...++++|..+|.+.+|.++.+|++...+
T Consensus        40 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~   68 (108)
T d1rroa_          40 ASQVKDIFRFIDNDQSGYLDGDELKYFLQ   68 (108)
T ss_dssp             HHHHHHHHHHHCTTCSSEECTHHHHTGGG
T ss_pred             HHHHHHHHhhhcCCCCCeEcHHHHHHHHH
Confidence            34678899999999999999998875543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.97  E-value=0.0051  Score=51.63  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~   34 (507)
                      +|+++|.+||||||+.+.|..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.96  E-value=0.0044  Score=53.28  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      +++|+++|+||+||||+.+.+..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0069  Score=52.14  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 010548           13 VRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      ++|+|+|+|||||||...+|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999975

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.94  E-value=0.0058  Score=52.16  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhcC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      +||+++|+||+||||+...+...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999888753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.94  E-value=0.0067  Score=52.29  Aligned_cols=25  Identities=16%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhcC
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      +.++|+++|+||+||||+..++...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999998853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.92  E-value=0.0061  Score=52.37  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 010548           15 VVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~~   36 (507)
                      |+|+|++|||||||+++|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0038  Score=53.62  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      ..+.+.|.++|.|||||||+.+.|..
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999964

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0063  Score=54.61  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .=+|+|+|++|+|||||++.+.+-.
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3479999999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.84  E-value=0.0066  Score=49.79  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             EEEecCCCCchHHHHHHHhcCC
Q 010548          426 CLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~~  447 (507)
                      |++.|.||+||||+.++++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7789999999999999987543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.82  E-value=0.0069  Score=51.28  Aligned_cols=21  Identities=33%  Similarity=0.378  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~   34 (507)
                      -|+|.|.+||||||++++|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.82  E-value=0.0079  Score=52.89  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      |+.++|+|-|+|||||||+...|...
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45688999999999999999999853

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=94.78  E-value=0.021  Score=48.58  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=26.7

Q ss_pred             HHHHhhhhhcCCCCCCCCHHHHHhhhcc--CCCCC
Q 010548          317 FLRGIFGLYDIDNDGAVRPAELEDLFLT--APESP  349 (507)
Q Consensus       317 fl~~~f~~~d~d~dg~l~~~el~~~f~~--~p~~p  349 (507)
                      -+..+|+.+|.|+||.|+.+|+.++|..  .|..|
T Consensus       144 ~~~~lf~~~D~d~dG~Is~~EF~~~~~~~~~~~d~  178 (189)
T d1qv0a_         144 DCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTLDP  178 (189)
T ss_dssp             HHHHHHHHSCCCTTSCEEHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCCCCcEeHHHHHHHHHHhCCCCCC
Confidence            3577899999999999999999998874  44455

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.76  E-value=0.0072  Score=51.44  Aligned_cols=23  Identities=39%  Similarity=0.668  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCchHHHHHHHhcC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      +||+++|+||+||||+.+.+...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998743

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.045  Score=49.27  Aligned_cols=23  Identities=48%  Similarity=0.582  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -.+++.|+||+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45999999999999999999853

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.73  E-value=0.0087  Score=51.49  Aligned_cols=24  Identities=13%  Similarity=0.245  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      ++..|+|+|+||+||||+.+++..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0053  Score=53.76  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.3

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      |+|+|++|||||||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999865

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=94.72  E-value=0.036  Score=39.73  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=51.6

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ..++++|..+|.+.+|.++.+|+...++.+ +..++..++..+.+.+   .++  .++.|+++.|+.+++
T Consensus         9 e~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~e~~~~~~~~---D~d--~~G~I~~~EF~~~m~   72 (77)
T d1oqpa_           9 EEILKAFRLFDDDNSGTITIKDLRRVAKEL-GENLTEEELQEMIAEA---DRN--DDNEIDEDEFIRIMK   72 (77)
T ss_dssp             HHHHHHHHHHCTTCSSSEEHHHHHHHHHHH-TCCCCHHHHHHHHHHH---CCS--SSSEECHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCEechHHHHHHHHHh-CCCCCHHHHHHHHHHh---CCC--CCCcEeHHHHHHHHH
Confidence            467899999999999999999999998875 4567787777766544   233  478999999999875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.68  E-value=0.0079  Score=54.00  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .=+++|+|+.|+|||||++.+.+-.
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4479999999999999999998754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.64  E-value=0.0077  Score=54.47  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .=+++|+|++|+|||||++.+++-.
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3479999999999999999988644

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0085  Score=51.10  Aligned_cols=21  Identities=19%  Similarity=0.581  Sum_probs=19.4

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      |+++|++||||+||+++++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.61  E-value=0.0085  Score=50.25  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -|+|.|.+||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999988764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.61  E-value=0.008  Score=52.32  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .++|+|+.|+|||||++.+++-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            58899999999999999998754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.60  E-value=0.008  Score=50.25  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      +|+++|.|||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.0086  Score=50.95  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCchHHHHHHHhc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      +||+++|+||+||||+.+.+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0089  Score=53.98  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .=+++|+|+.|+|||||++.+.+-.
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhccc
Confidence            3479999999999999999988744

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.52  E-value=0.0087  Score=49.89  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      |++.|+|||||||+.+++...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999998853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.51  E-value=0.0092  Score=50.67  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=18.2

Q ss_pred             eEE-EEEcCCCCCHHHHHHHHhc
Q 010548           13 VRV-VVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        13 ~kV-~ivG~~~vGKSSLin~l~~   34 (507)
                      +|| +|.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            355 5679999999999999964

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.48  E-value=0.0085  Score=50.16  Aligned_cols=20  Identities=20%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             EEEecCCCCchHHHHHHHhc
Q 010548          426 CLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~  445 (507)
                      +.|+|.+|+|||||+++++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.0086  Score=50.82  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCchHHHHHHHhc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      +||+++|+||+||||..+++..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988863

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.0095  Score=49.77  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      --++|+|.+||||||+.++|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34778999999999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.42  E-value=0.012  Score=50.33  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      ..+-|+|.|.+|||||||.++|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999974

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.41  E-value=0.0096  Score=51.27  Aligned_cols=21  Identities=43%  Similarity=0.637  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 010548           15 VVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~   35 (507)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.41  E-value=0.026  Score=50.63  Aligned_cols=23  Identities=43%  Similarity=0.586  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -.|++.|+||+|||+|++.+.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999863

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0095  Score=50.15  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             EEEEecCCCCchHHHHHHHhc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~  445 (507)
                      .|+|.|+||+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999873

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.0091  Score=51.21  Aligned_cols=22  Identities=32%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             EEEecCCCCchHHHHHHHhcCC
Q 010548          426 CLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~~  447 (507)
                      |+|+|++|||||||+++++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7999999999999999998653

>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Cow (Bos taurus), s100b [TaxId: 9913]

Probab=94.35  E-value=0.0067  Score=45.32  Aligned_cols=69  Identities=19%  Similarity=0.244  Sum_probs=49.9

Q ss_pred             HhHHHHHHHhhhhhc-CCCC-CCCCHHHHHhhhcc-CCCCC------CCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          312 SEAVEFLRGIFGLYD-IDND-GAVRPAELEDLFLT-APESP------WDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       312 ~~~~~fl~~~f~~~d-~d~d-g~l~~~el~~~f~~-~p~~p------~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      +.++.-+..+|.+|. +++| +.|+..|+.++... .|...      -..+.+....+.|.+|.|++++|+.+=..++
T Consensus         5 E~ai~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~~m~~LD~n~Dg~vdF~EF~~li~~la   82 (90)
T d3cr5x1           5 EKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMIT   82 (90)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence            357788899999995 5555 46999999999986 44322      2223344557899999999999987654443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.01  Score=52.71  Aligned_cols=23  Identities=43%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .++|+|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999988754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.01  Score=54.59  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .=+|+|+|+.|+|||||++.+++--
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3479999999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.30  E-value=0.01  Score=52.73  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            68999999999999999887643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.0092  Score=49.13  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.5

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      .|+++|+|||||||+.+.+...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.075  Score=47.13  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      .+++.|++|+||||++..++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999988764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.28  E-value=0.01  Score=51.49  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             EEEEEecCCCCchHHHHHHHhc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      .-|+++|.||+||||+.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999873

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.015  Score=50.00  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           11 TGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        11 ~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ..-++++||+||||||+++..|...
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            3457999999999999999888754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.011  Score=52.86  Aligned_cols=23  Identities=22%  Similarity=0.151  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      +++|+|++|+|||||++.+.+--
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            79999999999999999988754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.21  E-value=0.013  Score=54.91  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=22.5

Q ss_pred             CceEEEEEecCCCCchHHHHHHHhc
Q 010548          421 RNVFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       421 ~~~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      .+.++|.|.|+||+|||||+++++.
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            3568999999999999999999984

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.018  Score=49.47  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .-.|+|+|+|||||||+..+|...-
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3458999999999999999998643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.013  Score=50.32  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCchHHHHHHHhc
Q 010548          424 FRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      +.|+|+|+||+||||...++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988874

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.10  E-value=0.011  Score=52.42  Aligned_cols=20  Identities=25%  Similarity=0.502  Sum_probs=18.5

Q ss_pred             EEEecCCCCchHHHHHHHhc
Q 010548          426 CLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~  445 (507)
                      |+|+|.+|+|||||+++++.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            78999999999999999973

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.10  E-value=0.012  Score=52.36  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999999998854

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.07  E-value=0.016  Score=48.42  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      =|+|.|.+|+||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3667799999999999999864

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=94.04  E-value=0.053  Score=41.86  Aligned_cols=65  Identities=20%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHh--cCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKC--FNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~--~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ..++.+|..+|.+.+|.++.+||+..++..  .+..++..+++.+.+.+..     ..++.|+++.|+.++.
T Consensus        41 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~~~~~D~-----d~dG~I~~~EF~~~m~  107 (109)
T d5pala_          41 AQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDS-----DHDGKIGADEFAKMVA  107 (109)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCT-----TCSSSEEHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHHHHHhCC-----CCCCCEeHHHHHHHHH
Confidence            457889999999999999999999888764  4667888888777665532     3478999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.04  E-value=0.013  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68999999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.91  E-value=0.014  Score=48.98  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~   34 (507)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999874

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=93.85  E-value=0.012  Score=43.56  Aligned_cols=61  Identities=21%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             HHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHH
Q 010548          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFL  263 (507)
Q Consensus       197 ~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l  263 (507)
                      .++++|..+|.+.+|.++..|+....+. ++..++..+++.+.+.+..   +  .++.|+++.|+++
T Consensus        24 ~l~~~F~~~D~d~~G~I~~~el~~~l~~-lg~~~s~~e~~~l~~~~D~---d--~~g~I~~~EFl~a   84 (87)
T d1s6ja_          24 GLKELFKMIDTDNSGTITFDELKDGLKR-VGSELMESEIKDLMDAADI---D--KSGTIDYGEFIAA   84 (87)
T ss_dssp             TTTTHHHHHCTTCSSCEEHHHHHHHHHT-TTSSCCHHHHHHHHHHHCT---T--CSSEECHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHcCC---C--CCCeEeHHHHHHH
Confidence            4778999999999999999999988866 5788899888777766643   2  3578999999875

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=93.84  E-value=0.08  Score=40.76  Aligned_cols=65  Identities=20%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             HHHHHHHhhccCCCCCccChhhhHHHHhHhc--CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          196 RALKRIFIICDHDMDGALNDAELNEFQVKCF--NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       196 ~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~--~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ..++++|..+|.+.+|.++.+|++...+...  +..++.++++.+.+.+.     ...++.|+++.|..++.
T Consensus        41 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~ls~~ev~~~~~~~D-----~d~dG~I~~~EF~~~m~  107 (109)
T d1pvaa_          41 NDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAAD-----KDGDGKIGIDEFETLVH  107 (109)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHC-----TTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHhhCccCCCcCeEcHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHC-----CCCcCcEeHHHHHHHHH
Confidence            4567899999999999999999998877643  56788888877766552     23578999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.83  E-value=0.014  Score=52.76  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      +++|||++|+|||||++-+++-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            79999999999999999988653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.015  Score=49.25  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=20.7

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcC
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      +.-|+++|.||+||||+.++++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999999753

>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]

Probab=93.81  E-value=0.015  Score=43.71  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             HhHHHHHHHhhhhhc-CCCC-CCCCHHHHHhhhcc-------CCCCCCCCCccccccccCCCCccchHhHHhhhhhhhh
Q 010548          312 SEAVEFLRGIFGLYD-IDND-GAVRPAELEDLFLT-------APESPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL  381 (507)
Q Consensus       312 ~~~~~fl~~~f~~~d-~d~d-g~l~~~el~~~f~~-------~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  381 (507)
                      +.++.-+..+|.+|. +++| +.|+..|+..+...       .+..|-....+....+.|.+|.|++++|+.+=..++.
T Consensus         5 E~ai~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~li~~la~   83 (95)
T d1qlsa_           5 ERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGLAI   83 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHH
Confidence            357788899999996 4555 56999999999975       3455555555667789999999999999877665554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.77  E-value=0.015  Score=52.03  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      +++|+|++|+|||||++-+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            79999999999999999988654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.017  Score=49.77  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchHHHHHHHhc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~  445 (507)
                      ++++||+||||||+++..+..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            689999999999999988875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.74  E-value=0.0094  Score=53.87  Aligned_cols=25  Identities=40%  Similarity=0.453  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .=+|+|+|++|+|||||++.+.+-.
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3489999999999999998777643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.73  E-value=0.015  Score=50.05  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -|+|+|+|||||||+..+|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.016  Score=52.23  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      +++|||++|+|||||++-+.+--
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            79999999999999999988754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.017  Score=52.47  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .-++++||+||||||+++..|...-
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            3479999999999999999887543

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

Probab=93.67  E-value=0.058  Score=39.73  Aligned_cols=73  Identities=10%  Similarity=-0.005  Sum_probs=56.3

Q ss_pred             cHHHHHHHHHHHhhc-cCCCCC-ccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHH
Q 010548          191 KPRCVRALKRIFIIC-DHDMDG-ALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFI  268 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~-d~~~d~-~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~  268 (507)
                      .+.+...+.++|..+ +.++++ .++.+|+.......++..++..+++.+.+.+     +...++.|+|+.|+.|+....
T Consensus         5 lE~ai~~ii~~F~kya~~dG~~~~l~~~Elk~ll~~e~~~~~~~~~v~~i~~~~-----D~n~DG~IdF~EF~~l~~~la   79 (87)
T d1xk4a1           5 LEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKEL-----DINTDGAVNFQEFLILVIKMG   79 (87)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHH-----CTTCSSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCccCHHHHHHHHHHhcCCccchHHHHHHHHHh-----CCCCCCcCcHHHHHHHHHHHH
Confidence            356667788888776 777777 5799999999998888877777777776655     334588999999999987543

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=93.65  E-value=0.16  Score=37.80  Aligned_cols=73  Identities=18%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHHHhhc-cCCCCC-ccChhhhHHHHhHhcCC----CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHH
Q 010548          191 KPRCVRALKRIFIIC-DHDMDG-ALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~-d~~~d~-~l~~~el~~~~~~~~~~----~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~  264 (507)
                      .+.+...+..+|..+ +.++++ .++.+|+....+..+..    .....+++.+.+.+...     .++.|+|+.|+.|+
T Consensus         4 lE~~i~~i~~vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n-----~Dg~IdF~EF~~l~   78 (93)
T d1ksoa_           4 LEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTN-----KDCEVDFVEYVRSL   78 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHT-----TTCEECHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHcCC-----CCCCCcHHHHHHHH
Confidence            467788889999876 888888 59999999999875544    45677777777777653     57899999999998


Q ss_pred             HHHH
Q 010548          265 ALFI  268 (507)
Q Consensus       265 ~~~~  268 (507)
                      ....
T Consensus        79 ~~l~   82 (93)
T d1ksoa_          79 ACLC   82 (93)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.015  Score=51.87  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -++|+|++|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            58999999999999999998744

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.61  E-value=0.017  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999998754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.60  E-value=0.016  Score=51.80  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999998754

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.054  Score=45.84  Aligned_cols=32  Identities=25%  Similarity=0.523  Sum_probs=26.9

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhccCC
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLTAP  346 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p  346 (507)
                      .+....+|+.+|.|+||.++.+|..++.+..|
T Consensus       139 ~~~v~~~~~~~D~d~dG~Is~~EF~~~~~~~P  170 (180)
T d1xo5a_         139 KQLIDNILEESDIDRDGTINLSEFQHVISRSP  170 (180)
T ss_dssp             HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHhCH
Confidence            34456789999999999999999998887766

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.60  E-value=0.017  Score=49.69  Aligned_cols=21  Identities=43%  Similarity=0.759  Sum_probs=19.0

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      |+|+|++|||||||+++++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.013  Score=52.24  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999873

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.59  E-value=0.011  Score=52.33  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            58999999999999999999854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.56  E-value=0.022  Score=51.28  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -|++.|+||+|||||+.++.+..
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998744

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.56  E-value=0.017  Score=51.26  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            58999999999999999877754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.017  Score=51.18  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.0

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      -++++|++|||||||++.+.+-..
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            589999999999999999887543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.53  E-value=0.017  Score=48.60  Aligned_cols=19  Identities=11%  Similarity=0.181  Sum_probs=17.2

Q ss_pred             EEEecCCCCchHHHHHHHh
Q 010548          426 CLLFGPQNAGKSALLNSFL  444 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~  444 (507)
                      |+|.|.|||||||+++++.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999999875

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=93.50  E-value=0.11  Score=38.57  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHHHhhc-cCCCC-CccChhhhHHHHhHhcC----CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHH
Q 010548          191 KPRCVRALKRIFIIC-DHDMD-GALNDAELNEFQVKCFN----APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~-d~~~d-~~l~~~el~~~~~~~~~----~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~  264 (507)
                      .+++...+.++|..+ +.+++ |.++.+|+.......+.    .+.++.+++.+.+.+..     ..++.|+++.|+.++
T Consensus         4 lE~~i~~l~~~F~~y~d~dg~~G~is~~El~~~L~~~~~~~~~~~~~~~~~~~~~~~~D~-----d~dG~Idf~EF~~lm   78 (93)
T d1zfsa1           4 LETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDE-----NGDGEVDFQEFVVLV   78 (93)
T ss_dssp             HHHHHHHHHHHHHHHGGGSSCCSSEEHHHHHHHHHHHSTTTSCCSSCHHHHHHHHHHHTT-----TCCSEECSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCEecHHHHHHHHHHhcccccccCCCHHHHHHHHHHHcC-----CCCCCCcHHHHHHHH
Confidence            466778889999876 67754 89999999999988654    35566666666555532     357899999999988


Q ss_pred             HHHH
Q 010548          265 ALFI  268 (507)
Q Consensus       265 ~~~~  268 (507)
                      ..+.
T Consensus        79 ~~l~   82 (93)
T d1zfsa1          79 AALT   82 (93)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.45  E-value=0.015  Score=48.53  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.3

Q ss_pred             EEEEecCCCCchHHHHHHHhc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~  445 (507)
                      ||+++|.|||||||+.+.+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999887753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.43  E-value=0.018  Score=51.35  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -++++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.40  E-value=0.019  Score=47.99  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.6

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      |++.|.||+||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.40  E-value=0.018  Score=48.74  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.0

Q ss_pred             EEE-EecCCCCchHHHHHHHh
Q 010548          425 RCL-LFGPQNAGKSALLNSFL  444 (507)
Q Consensus       425 kv~-ivG~~~vGKSsll~~l~  444 (507)
                      ||+ |.|.+||||||+++.+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            554 56999999999999885

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.39  E-value=0.04  Score=52.77  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      .-++++||+||||||+++..|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34689999999999999976664

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=93.38  E-value=0.13  Score=38.67  Aligned_cols=75  Identities=9%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             ccHHHHHHHHHHHhhc-cCCCC-CccChhhhHHHHhHhcCC-CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHH
Q 010548          190 LKPRCVRALKRIFIIC-DHDMD-GALNDAELNEFQVKCFNA-PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       190 ~~~~~~~~l~~~~~~~-d~~~d-~~l~~~el~~~~~~~~~~-~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~  266 (507)
                      ..+++...+.++|..+ +.+++ |.++.+|+....+..+.. ..+..+++.+.+.+..     ..++.|+|+.|+.++.-
T Consensus         8 ~lE~~i~~l~~vF~~y~d~dg~~g~is~~El~~~l~~~~~~~~~~~~~v~~l~~~~D~-----d~DG~IdF~EF~~l~~~   82 (98)
T d1yuta1           8 ELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDV-----NQDSELKFNEYWRLIGE   82 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSSSCBCHHHHHHHHHHHCTTTTCCSSCHHHHHHHHCT-----TCCSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccCCCCCEEcHHHHHHHHHHhccccCCCHHHHHHHHHHhcC-----CCCCcCCHHHHHHHHHH
Confidence            3467778888999886 55654 999999999999987654 3455567777766632     34789999999999876


Q ss_pred             HHH
Q 010548          267 FIE  269 (507)
Q Consensus       267 ~~~  269 (507)
                      +..
T Consensus        83 l~~   85 (98)
T d1yuta1          83 LAK   85 (98)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.36  E-value=0.018  Score=51.16  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -.+++.|+||+||||+++.+.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999864

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=93.35  E-value=0.059  Score=40.15  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=54.6

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhc----CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCF----NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~----~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~  266 (507)
                      .+++...+.++|..+|.+ +|.++.+|+.......+    +....+..++.+.+.+.     ...++.|+|+.|+.|+..
T Consensus         4 lE~~ie~l~~~F~~yd~d-dG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D-----~n~DG~I~F~EF~~li~~   77 (92)
T d1a4pa_           4 MEHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLD-----QCRDGKVGFQSFFSLIAG   77 (92)
T ss_dssp             HHHHHHHHHHHHHHHHGG-GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHC-----TTSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-CCEEcHHHHHHHHHHhccccccccCCHHHHHHHHHHHh-----CCCCCCCcHHHHHHHHHH
Confidence            456778899999999987 89999999999987643    33445666666665553     335889999999999765


Q ss_pred             HH
Q 010548          267 FI  268 (507)
Q Consensus       267 ~~  268 (507)
                      ..
T Consensus        78 l~   79 (92)
T d1a4pa_          78 LT   79 (92)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.33  E-value=0.019  Score=52.61  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      +++|+|++|+|||||++.+++--
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            69999999999999999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.28  E-value=0.02  Score=49.73  Aligned_cols=24  Identities=25%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      .++++|+.|+|||||++.+++--.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcccc
Confidence            588999999999999999987543

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=93.28  E-value=0.073  Score=40.84  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=52.5

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhc--CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCF--NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~--~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ...++.+|..+|.+.+|.++.+|+....+...  +..++.++++.+.+.+..     ..++.|+++.|..+++
T Consensus        39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~~l~~~~D~-----d~dG~I~~~EF~~~m~  106 (107)
T d2pvba_          39 LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDK-----DGDGMIGVDEFAAMIK  106 (107)
T ss_dssp             HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHCT-----TCSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHHHHHHHhCC-----CCCCcEeHHHHHHHHc
Confidence            34688999999999999999999999888754  346788877777655532     3477999999998875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.23  E-value=0.021  Score=50.85  Aligned_cols=24  Identities=38%  Similarity=0.596  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      -++++|++|+|||||++.+.+-..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            367999999999999999998653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.022  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      ++++||+||||||+++..+...
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999988743

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.016  Score=49.32  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=19.7

Q ss_pred             eEEEEEecCCCCchHHHHHHHhc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      ..-|.++|.||+||||+.+.+..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998863

>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Diacylglycerol kinase alpha, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.084  Score=41.27  Aligned_cols=79  Identities=10%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             CCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhcc-CCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCC
Q 010548          210 DGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH-DGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDD  288 (507)
Q Consensus       210 d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~  288 (507)
                      ...|+.+++...|+..-   .+..+|+.+.+....... ...-++.|+.++|..+...|...|..               
T Consensus         5 ~s~l~p~~l~~L~~~T~---fs~~ei~~l~~~Fk~~~~~~~~p~g~i~~~~F~~~~~~~f~~~~~---------------   66 (118)
T d1tuza_           5 RGLISPSDFAQLQKYME---YSTKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNV---------------   66 (118)
T ss_dssp             CSCSCHHHHHHHHHHHH---HCCCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSC---------------
T ss_pred             cCCCCHHHHHHHHHHcC---CCHHHHHHHHHHHhccccccCCcccccCHHHHHHHHHHhCCCCCc---------------
Confidence            44577777777777632   455667777777743211 11224579999999998766522211               


Q ss_pred             ccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCC
Q 010548          289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDG  331 (507)
Q Consensus       289 l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg  331 (507)
                                               ...|..+||+.||.++|+
T Consensus        67 -------------------------~~~l~~rlF~~FD~~~d~   84 (118)
T d1tuza_          67 -------------------------PRHLSLALFQSFETGHCL   84 (118)
T ss_dssp             -------------------------CHHHHHHHHHHSCCCCCT
T ss_pred             -------------------------hHHHHHHHHHHHcccccc
Confidence                                     246889999999999873

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.09  E-value=0.022  Score=50.66  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      -++++|++|+|||||++.+.+-..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            589999999999999999888654

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.07  E-value=0.026  Score=47.64  Aligned_cols=104  Identities=11%  Similarity=0.096  Sum_probs=71.7

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchhHHHhhccCCCCccccCCCCCCCCCCCCCCc
Q 010548          228 APLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQS  307 (507)
Q Consensus       228 ~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~  307 (507)
                      ...+..+++.+.+.+.+..|+    +.|+.+.|..+...+...                                     
T Consensus         8 t~ft~~ei~~l~~~F~~~~~~----G~is~~ef~~~l~~~~~~-------------------------------------   46 (178)
T d1s6ca_           8 TNFTKRELQVLYRGFKNECPS----GVVNEETFKQIYAQFFPH-------------------------------------   46 (178)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT----SEECHHHHHHHHHHHSTT-------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHCcC----CCccHHHHHHHHHHhCCC-------------------------------------
Confidence            356788899988877666554    359999998775433200                                     


Q ss_pred             eecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC-CCCCCC-CCccccccccCCCCccchHhHHhhh
Q 010548          308 VELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA-PESPWD-EAPYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       308 ~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~-p~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                          .....+..++|+.||.|++|.++..|.-.+++.. +..+.. .......++.+.+|.|+.+++...=
T Consensus        47 ----~~~~~~~~~lf~~~D~~~~g~I~~~EFl~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~~  113 (178)
T d1s6ca_          47 ----GDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIV  113 (178)
T ss_dssp             ----SCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHHhccchHHHHHHHHHhhccCCCCeecHHHHHHHH
Confidence                0113466789999999999999999998888763 332222 1223445678999999998877643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.022  Score=47.37  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=17.8

Q ss_pred             EEEecCCCCchHHHHHHHhc
Q 010548          426 CLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~  445 (507)
                      +++.|.||+||||+.+.+..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67799999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.04  E-value=0.023  Score=51.37  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            368999999999999999998744

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.02  E-value=0.025  Score=48.48  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ..+.+-|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            455688999999999999999988753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.98  E-value=0.023  Score=51.26  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -++++|+.|+|||||++.+.+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            58999999999999999998854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.95  E-value=0.039  Score=49.18  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      .-.+++.|+||+||||++..+++..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3469999999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.028  Score=48.93  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ++-|+|.|.+|+|||||.++|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            477999999999999999998753

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.0088  Score=50.58  Aligned_cols=68  Identities=10%  Similarity=0.082  Sum_probs=51.4

Q ss_pred             HHHHHHHhhhh--hcCCCCCCCCHHHHHhhhccCCC----CCCCCCccccccccCCCCccchHhHHhhhhhhhh
Q 010548          314 AVEFLRGIFGL--YDIDNDGAVRPAELEDLFLTAPE----SPWDEAPYKDAAETTALGNLTLKGFVSKWALMTL  381 (507)
Q Consensus       314 ~~~fl~~~f~~--~d~d~dg~l~~~el~~~f~~~p~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  381 (507)
                      ...||.++|.+  +|.|+||.++-+||.++|...-.    ..-.........+++..|.|++++|..+|..++.
T Consensus         3 ~~~~l~k~~~k~~~d~n~dG~Is~~el~k~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~F~eF~~~~~~l~~   76 (170)
T d2zkmx1           3 RSTFLDKILVKLKMQLNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCP   76 (170)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSCEEHHHHHHHSCSCHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHSC
T ss_pred             HhHHHHHHHHHHhcccCCCCCCcHHHHHHHHHHhhhhHHHHHHHHhhhhccccccCCCccCHHHHHHHHhccCC
Confidence            35789999998  89999999999999999974210    1111222344567888999999999999988763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.88  E-value=0.023  Score=47.30  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.3

Q ss_pred             EEEEecCCCCchHHHHHHHhc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~  445 (507)
                      +|+++|.|||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.85  E-value=0.017  Score=52.17  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      +++|+|++|+|||||++-+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            7999999999999999877764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=92.78  E-value=0.02  Score=50.65  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      -++++|++|||||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            489999999999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.76  E-value=0.024  Score=50.21  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      .+++.|+||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999998754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=0.026  Score=48.41  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             EEEEecCCCCchHHHHHHHhc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~  445 (507)
                      -|+++|+||+||||+...+..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.025  Score=50.41  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      -++++|++|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            58999999999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.64  E-value=0.035  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             EEEEEecCCCCchHHHHHHHhcCC
Q 010548          424 FRCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       424 ~kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      .-|++.|+||+|||||...+.+.-
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999998643

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.63  E-value=0.11  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      .+|+|+|.+|+|||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999863

>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100p [TaxId: 9606]

Probab=92.57  E-value=0.019  Score=43.10  Aligned_cols=68  Identities=13%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             hHHHHHHHhhhhhc-CCCC-CCCCHHHHHhhhcc-C------CCCCCCCCccccccccCCCCccchHhHHhhhhhhh
Q 010548          313 EAVEFLRGIFGLYD-IDND-GAVRPAELEDLFLT-A------PESPWDEAPYKDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       313 ~~~~fl~~~f~~~d-~d~d-g~l~~~el~~~f~~-~------p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      .++.-+..+|.+|. +++| +.|+..|++++... .      |..|-..+.+....+.|.+|.|++++|+.+=..++
T Consensus         6 ~ai~~ii~vFhkYa~~~g~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li~~la   82 (94)
T d1j55a_           6 TAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAIT   82 (94)
T ss_dssp             HHHHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence            57788999999995 4444 47999999999975 2      33444445556667899999999999987655544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.52  E-value=0.03  Score=49.84  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.49  E-value=0.016  Score=51.78  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCc
Confidence            368999999999999999998754

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=92.49  E-value=0.087  Score=44.31  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhccCCCCCccChhhhHHHHhH
Q 010548          193 RCVRALKRIFIICDHDMDGALNDAELNEFQVK  224 (507)
Q Consensus       193 ~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~  224 (507)
                      .....+..+|...|.+.+|.++.+|+..+.+.
T Consensus       102 ~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~  133 (187)
T d1uhka1         102 LIRIWGDALFDIVDKDQNGAITLDEWKAYTKA  133 (187)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcccchHHHHHHHHH
Confidence            34456788899999999999999998766654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.47  E-value=0.029  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      |++.|.||+||||+.+.+...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999998754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.39  E-value=0.04  Score=49.35  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      ...|++.|+||+|||+|++.+.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            456999999999999999999863

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.16  Score=37.89  Aligned_cols=68  Identities=18%  Similarity=0.142  Sum_probs=52.0

Q ss_pred             cHHHHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHH
Q 010548          191 KPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALF  267 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~  267 (507)
                      .++-....+++|..+| +.+|.++.+|+.....+   ..+...+++.|-+.+...     .++.||+++|...+.+.
T Consensus         5 s~ee~~~y~~~F~~~D-~~~G~i~~~el~~~l~~---~gl~~~~L~~Iw~~~D~~-----~dG~l~~~EF~~a~~Li   72 (95)
T d2jxca1           5 KPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLN---SKLPVDILGRVWELSDID-----HDGMLDRDEFAVAMFLV   72 (95)
T ss_dssp             CHHHHHHHHHHHHHTC-CBTTEEEHHHHHHHHTT---SSCCHHHHHHHHHHHCTT-----CSSEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHHH---cCCCHHHHHHHHHHhcCC-----CCCeEcHHHHHHHHHHH
Confidence            4455667889999999 78999999999988765   457788777777776443     56789999997655543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.24  E-value=0.031  Score=51.98  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -.|+++|+||||||.|.+++.+.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999999864

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=92.22  E-value=0.15  Score=39.13  Aligned_cols=66  Identities=21%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhccCCCCCccChhhhHHHHhHhc--CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHH
Q 010548          195 VRALKRIFIICDHDMDGALNDAELNEFQVKCF--NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHA  265 (507)
Q Consensus       195 ~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~--~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~  265 (507)
                      ...++.+|..+|.+.+|.++..|+....+.+.  +..++..+++.+.+.+..     ..++.|+++.|..++.
T Consensus        40 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e~~~~~~~~D~-----d~dG~i~~~EF~~~m~  107 (109)
T d1rwya_          40 ADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDK-----DGDGKIGVEEFSTLVA  107 (109)
T ss_dssp             HHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCT-----TCSSSEEHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHHHHHHHHHhCC-----CCCCeEeHHHHHHHHH
Confidence            34567899999999999999999999988754  346788888777666622     3578899999999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.029  Score=49.79  Aligned_cols=22  Identities=41%  Similarity=0.516  Sum_probs=20.2

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999873

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.13  E-value=0.033  Score=47.72  Aligned_cols=22  Identities=14%  Similarity=0.344  Sum_probs=19.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      -|+++|+||+||||+..++...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999998753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.12  E-value=0.033  Score=49.39  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      .+++.|+||+||||+++.+++.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998853

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.08  E-value=0.47  Score=39.37  Aligned_cols=114  Identities=16%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             HHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHHHHHcCCccchh
Q 010548          198 LKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHALFIEKGRLETTW  277 (507)
Q Consensus       198 l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~w  277 (507)
                      ..+++..++.+.+|.++.+|+-..........    .-+.++.+.....-+  .++.|+.+.|..+..-........   
T Consensus        61 ~~~lf~~~d~~~~g~i~~~eFl~~~~~~~~~~----~~~~~~~~f~~~D~d--~dg~i~~~E~~~~~~~~~~~~~~~---  131 (181)
T d1bjfa_          61 AEHVFRTFDANGDGTIDFREFIIALSVTSRGK----LEQKLKWAFSMYDLD--GNGYISKAEMLEIVQAIYKMVSSV---  131 (181)
T ss_dssp             HHHHHHHHCSSCSSEEEHHHHHHHHHHHTSSC----HHHHHHHHHHHHCTT--CSSCEEHHHHHHHHHHHHTTCCCT---
T ss_pred             HHHHHHhcCCCCCCcEeHHHHHHHHHHHhhhc----hHHHHHHHHHHhccC--CCCeecHHHHHHHHHHHhhhcccc---
Confidence            46778888999999998888776665543321    122344444433222  366788888888876544221110   


Q ss_pred             HHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccCCC
Q 010548          278 AVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPE  347 (507)
Q Consensus       278 ~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~p~  347 (507)
                               ..       ++           +-.....+-+..+|+.+|.|+||.++-+|..++....|.
T Consensus       132 ---------~~-------~~-----------~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~~p~  174 (181)
T d1bjfa_         132 ---------MK-------MP-----------EDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPS  174 (181)
T ss_dssp             ---------TT-------SC-----------GGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHHHCTH
T ss_pred             ---------cc-------CC-----------cccccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHH
Confidence                     00       00           001123355678999999999999999999998887764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.98  E-value=0.034  Score=49.88  Aligned_cols=22  Identities=45%  Similarity=0.561  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -|+|.|++|+|||||+++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5789999999999999998753

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.92  E-value=0.084  Score=35.80  Aligned_cols=59  Identities=17%  Similarity=0.293  Sum_probs=47.0

Q ss_pred             HHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHH
Q 010548          197 ALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFL  261 (507)
Q Consensus       197 ~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~  261 (507)
                      .+++.|..+|.+.+|.++.+|+....+ .++..++..+++.+.+.+   -++  .++.|+++.|+
T Consensus         2 el~~aF~~fD~~~~G~I~~~el~~~l~-~~g~~~~~~ei~~l~~~~---D~d--~dg~I~~~eFl   60 (61)
T d2fcea1           2 DFVKAFQVFDKESTGKVSVGDLRYMLT-GLGEKLTDAEVDELLKGV---EVD--SNGEIDYKKFI   60 (61)
T ss_dssp             HHHHHHHHHCTTCCSCEEHHHHHHHHH-HTTCCCCHHHHHHHHTTC---CCC--TTSEECHHHHH
T ss_pred             hHHHHHHHHCCCCCCeEeHHHHHHHHH-HcCCCCCHHHHHHHHHHc---CCC--CCCcEeHHHhc
Confidence            467889999999999999999999986 567889988887776433   222  46788998887

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=91.88  E-value=0.06  Score=44.80  Aligned_cols=66  Identities=15%  Similarity=0.211  Sum_probs=45.7

Q ss_pred             HHHHHHhhhhhcCCCCCCCCHHHHHhhhcc-----CCCCCCCCCcc--------ccccccCCCCccchHhHHhhhhhhh
Q 010548          315 VEFLRGIFGLYDIDNDGAVRPAELEDLFLT-----APESPWDEAPY--------KDAAETTALGNLTLKGFVSKWALMT  380 (507)
Q Consensus       315 ~~fl~~~f~~~d~d~dg~l~~~el~~~f~~-----~p~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~w~~~~  380 (507)
                      ++-|+.+|+.+|.|+||.|+.+|+..+...     .+..++.....        ....+.+.++.|+.++|+..+....
T Consensus         5 ~~~l~~~F~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~   83 (174)
T d2scpa_           5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMV   83 (174)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHTGGGTTTTSCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCCCCcEeHHHHHHHHHHHhccccchhHHHHHhHHhhhhhccccccccCCCCcCcHHHHHHHHHhhh
Confidence            567899999999999999999999988753     11111111000        0123456778999999998886653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.87  E-value=0.052  Score=45.10  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.1

Q ss_pred             eEEEEEecCCCCchHHHHHHHh
Q 010548          423 VFRCLLFGPQNAGKSALLNSFL  444 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~  444 (507)
                      .+-|.++|.||+||||+.+.+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3678899999999999887776

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.87  E-value=0.048  Score=46.24  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             ceEEEEEecCCCCchHHHHHHHhc
Q 010548          422 NVFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       422 ~~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      ..+=|+|-|.+|+|||||.+++..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346699999999999999999863

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.85  E-value=0.043  Score=47.84  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eEEEEEecCCCCchHHHHHHHhc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      .++|+|-|+|||||||...++..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.85  E-value=0.041  Score=45.98  Aligned_cols=20  Identities=10%  Similarity=0.326  Sum_probs=17.7

Q ss_pred             EEEecCCCCchHHHHHHHhc
Q 010548          426 CLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~  445 (507)
                      |+++|.|||||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999998863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.79  E-value=0.025  Score=50.34  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      .++++|++|+|||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC
Confidence            689999999999999999988543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.78  E-value=0.038  Score=48.85  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      .+++.|+||+||||+.+.++..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999998853

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.04  Score=47.85  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATES   36 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~~   36 (507)
                      -|+|.|+|||||||+...|..+-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999998643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.61  E-value=0.041  Score=48.40  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 010548           14 RVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999988763

>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Osteonectin
domain: C-terminal (EC) domain of BM-40/SPARC/osteonectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=0.017  Score=47.13  Aligned_cols=55  Identities=20%  Similarity=0.237  Sum_probs=44.5

Q ss_pred             HhhhhhcCC-CCCCCCHHHHHhhhccCCCCC-CCC-CccccccccCCCCccchHhHHhhh
Q 010548          320 GIFGLYDID-NDGAVRPAELEDLFLTAPESP-WDE-APYKDAAETTALGNLTLKGFVSKW  376 (507)
Q Consensus       320 ~~f~~~d~d-~dg~l~~~el~~~f~~~p~~p-~~~-~~~~~~~~~~~~~~~~~~~~~~~w  376 (507)
                      =.|.+-|.+ .||.|+..||..+-.  |..| ..| ..|...++.|.+|.|++.+|....
T Consensus        81 W~F~~LD~n~~D~~L~~~EL~~l~~--~L~~~e~C~~~F~~~CD~n~D~~Is~~EW~~Cf  138 (151)
T d1sraa_          81 WQFGQLDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF  138 (151)
T ss_dssp             HHHHHHCCTTCSSEECTTTTGGGGS--TTSTTGGGHHHHHHHHCTTCSSSEEHHHHHHHT
T ss_pred             eehhhcCCCCCCCccCHHHHHHHHH--hhcCCchHHHHHHHHhcCCCCCcCCHHHHHHHc
Confidence            449999999 699999999988764  3333 344 668899999999999999998743

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.54  E-value=0.056  Score=48.28  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 010548           13 VRVVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        13 ~kV~ivG~~~vGKSSLin~l~~~   35 (507)
                      -.++|.|+||+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998854

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.53  E-value=0.06  Score=46.76  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 010548           10 RTGVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        10 ~~~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      .+..-|.|.|.||+|||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.50  E-value=0.041  Score=49.36  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.8

Q ss_pred             EEEEecCCCCchHHHHHHHhc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~  445 (507)
                      -|+|.|++|+|||||+++++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999999874

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=91.50  E-value=0.044  Score=48.80  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      -++++|+.|+|||||++.+.+-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            489999999999999999988654

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=91.49  E-value=0.22  Score=36.65  Aligned_cols=73  Identities=21%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             cHHHHHHHHHHHhhc-cCCCCC-ccChhhhHHHHhHhc--CCCCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHHHH
Q 010548          191 KPRCVRALKRIFIIC-DHDMDG-ALNDAELNEFQVKCF--NAPLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLHAL  266 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~-d~~~d~-~l~~~el~~~~~~~~--~~~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~~~  266 (507)
                      .+.+...+..+|..+ +.++++ .|+..|+....+.-+  +...++.+++.+.+.+...     .++.|+|+.|+.|+..
T Consensus         4 lE~ai~~ii~vF~kya~~dg~~~~ls~~Elk~Ll~~e~~~~~~~~~~~~~~~~~~lD~d-----~Dg~IdF~EF~~l~~~   78 (89)
T d1k8ua_           4 LDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRN-----KDQEVNFQEYVTFLGA   78 (89)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHT-----TTCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCeecHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcCC-----CCCCCcHHHHHHHHHH
Confidence            467788888999876 788887 599999999988744  3345666777777666543     5789999999999875


Q ss_pred             HH
Q 010548          267 FI  268 (507)
Q Consensus       267 ~~  268 (507)
                      ..
T Consensus        79 la   80 (89)
T d1k8ua_          79 LA   80 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.41  E-value=0.045  Score=49.29  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.7

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      -++++|++|+|||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            58999999999999999998754

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=91.34  E-value=0.75  Score=37.38  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=68.2

Q ss_pred             HHHHHHHHHhhccCCCCCccChhhhHHHHhHhcCCCCCHHHHHHHHHHHHhhcc--CCccCCCcchhhHHHHHHHHHHcC
Q 010548          194 CVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVGVKRVVQEKQH--DGVNDLGLTLSGFLFLHALFIEKG  271 (507)
Q Consensus       194 ~~~~l~~~~~~~d~~~d~~l~~~el~~~~~~~~~~~l~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~f~~l~~~~~~~~  271 (507)
                      ............+.+.++.+...+..................+.....+.....  +.-.++.|+.+.|..+..      
T Consensus        56 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~~~------  129 (176)
T d1nyaa_          56 FGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLT------  129 (176)
T ss_dssp             HHHHHHHHHHHHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHH------
T ss_pred             HHHHHHHHHHHhcCCCCCcccHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHHHHH------
Confidence            334445566677778888888777666655544443332223222222222211  233477899999988743      


Q ss_pred             CccchhHHHhhccCCCCccccCCCCCCCCCCCCCCceecCHhHHHHHHHhhhhhcCCCCCCCCHHHHHhhhccC
Q 010548          272 RLETTWAVLRKFGYGDDLELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTA  345 (507)
Q Consensus       272 ~~~~~w~~l~~~~y~~~l~~~~~~~p~~~~~~~~~~~~~s~~~~~fl~~~f~~~d~d~dg~l~~~el~~~f~~~  345 (507)
                                .+|           +|                 .+-+..+|+.+|.|+||.|+.+|+-++|...
T Consensus       130 ----------~~~-----------~~-----------------~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~  165 (176)
T d1nyaa_         130 ----------ALG-----------MS-----------------KAEAAEAFNQVDTNGNGELSLDELLTAVRDF  165 (176)
T ss_dssp             ----------HTT-----------CC-----------------HHHHHHHHHHHCTTCSSEEEHHHHHHHHSCC
T ss_pred             ----------hcC-----------Cc-----------------HHHHHHHHHHHCCCCCCcEeHHHHHHHHHHH
Confidence                      111           11                 2457899999999999999999999998863

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.19  Score=44.22  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 010548           15 VVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~   34 (507)
                      +++.|++|+||||++..+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=91.09  E-value=0.051  Score=48.29  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      -++++|+.|+|||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999988754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.08  E-value=0.076  Score=45.05  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 010548           12 GVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        12 ~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      ++-|+|.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57799999999999999998864

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.029  Score=45.02  Aligned_cols=62  Identities=13%  Similarity=0.253  Sum_probs=43.2

Q ss_pred             HHHhhhhhcCCCCCCCCHHHHHhhhccCCCCCCC---CCccccc-cccCCCCccchHhHHhhhhhh
Q 010548          318 LRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWD---EAPYKDA-AETTALGNLTLKGFVSKWALM  379 (507)
Q Consensus       318 l~~~f~~~d~d~dg~l~~~el~~~f~~~p~~p~~---~~~~~~~-~~~~~~~~~~~~~~~~~w~~~  379 (507)
                      |++.|+.||.|++|.|+.+||.+++......|-.   ...+... ...+.+|.|++++|.......
T Consensus         2 ~ke~F~~~D~d~~G~I~~~el~~~l~~lg~~~t~~e~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~   67 (139)
T d1w7jb1           2 FKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAV   67 (139)
T ss_dssp             HHHHHHHHCCSSSSEEESTTHHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCeECHHHHHHHHHHhccCCCHHHHHHHHHHHhcccccCCceeeeccchhhHhh
Confidence            5789999999999999999999999864332211   1112211 123567899999998776543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.078  Score=48.94  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc
Q 010548            9 SRTGVRVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus         9 ~~~~~kV~ivG~~~vGKSSLin~l~~   34 (507)
                      ....+-|+|.|.+||||||+.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            45578999999999999999988864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.88  E-value=0.071  Score=47.87  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=17.7

Q ss_pred             EEEecCCCCchHHHHHHHhcC
Q 010548          426 CLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       426 v~ivG~~~vGKSsll~~l~~~  446 (507)
                      +.+.|+||+|||++++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998853

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.87  E-value=0.062  Score=48.31  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 010548           15 VVVVGDRGTGKSSLIAAAATE   35 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~~   35 (507)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999999854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.84  E-value=0.071  Score=47.61  Aligned_cols=24  Identities=38%  Similarity=0.587  Sum_probs=21.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhcC
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      .-.|++.|+||+|||++++.+.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            456999999999999999998854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.65  E-value=0.063  Score=46.14  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 010548           14 RVVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        14 kV~ivG~~~vGKSSLin~l~~   34 (507)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.57  E-value=0.061  Score=48.31  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             EEEEecCCCCchHHHHHHHhcCCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERPF  448 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~~  448 (507)
                      -++++|+.|+|||||++.+.+-..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            479999999999999999998743

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.44  E-value=0.06  Score=48.07  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             EEEEecCCCCchHHHHHHHhc
Q 010548          425 RCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~  445 (507)
                      .+++.|+||+|||++++.+..
T Consensus        45 ~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.066  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             EEEEecCCCCchHHHHHHHhcCC
Q 010548          425 RCLLFGPQNAGKSALLNSFLERP  447 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~~  447 (507)
                      .+++.|+||+||||++..+++.-
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.42  E-value=0.06  Score=49.91  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=19.3

Q ss_pred             EEEEecCCCCchHHHHHHHhcC
Q 010548          425 RCLLFGPQNAGKSALLNSFLER  446 (507)
Q Consensus       425 kv~ivG~~~vGKSsll~~l~~~  446 (507)
                      -++++|+||||||.|.+.+.+.
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4789999999999999998753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.27  Score=42.26  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 010548           15 VVVVGDRGTGKSSLIAAAAT   34 (507)
Q Consensus        15 V~ivG~~~vGKSSLin~l~~   34 (507)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999998775

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]

Probab=90.24  E-value=0.66  Score=33.71  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHhhcc-CCCCC-ccChhhhHHHHhHhcCC----CCCHHHHHHHHHHHHhhccCCccCCCcchhhHHHHH
Q 010548          191 KPRCVRALKRIFIICD-HDMDG-ALNDAELNEFQVKCFNA----PLQPAEIVGVKRVVQEKQHDGVNDLGLTLSGFLFLH  264 (507)
Q Consensus       191 ~~~~~~~l~~~~~~~d-~~~d~-~l~~~el~~~~~~~~~~----~l~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~l~  264 (507)
                      .+.+...+..+|..++ .+++. .|+..|+....+.-+..    ...+..++.+.+.+.     ...++.|+|+.|+.|.
T Consensus         3 lE~ai~~li~vF~kya~~~g~~~~Lsk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~lD-----~n~Dg~idF~EF~~li   77 (87)
T d1e8aa_           3 LEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLD-----ANQDEQVDFQEFISLV   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSTTTSTTTTSHHHHHHHHHHHC-----TTCSSCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccCCCCCeEcHHHHHHHHHHHccccccCCCCHHHHHHHHHHHc-----CCCCCcCCHHHHHHHH
Confidence            4567788889998774 44444 69999999999885544    445566666666653     3458899999999998


Q ss_pred             HHHH
Q 010548          265 ALFI  268 (507)
Q Consensus       265 ~~~~  268 (507)
                      ....
T Consensus        78 ~~l~   81 (87)
T d1e8aa_          78 AIAL   81 (87)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.084  Score=45.64  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.0

Q ss_pred             eEEEEEecCCCCchHHHHHHHhc
Q 010548          423 VFRCLLFGPQNAGKSALLNSFLE  445 (507)
Q Consensus       423 ~~kv~ivG~~~vGKSsll~~l~~  445 (507)
                      ++-|+|-|.+|+|||||.+++..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998853