Citrus Sinensis ID: 010550
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | 2.2.26 [Sep-21-2011] | |||||||
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | yes | no | 0.964 | 0.905 | 0.640 | 0.0 | |
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | no | no | 0.968 | 0.914 | 0.523 | 1e-158 | |
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | no | no | 0.964 | 0.903 | 0.525 | 1e-157 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.964 | 0.873 | 0.316 | 1e-67 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.948 | 0.845 | 0.32 | 9e-62 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | yes | no | 0.909 | 0.545 | 0.253 | 2e-30 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | no | no | 0.534 | 0.304 | 0.274 | 2e-29 | |
| A0FGR8 | 921 | Extended synaptotagmin-2 | yes | no | 0.810 | 0.446 | 0.255 | 9e-29 | |
| Q7ZWU7 | 876 | Extended synaptotagmin-2- | N/A | no | 0.822 | 0.476 | 0.245 | 2e-28 | |
| Q5FWL4 | 872 | Extended synaptotagmin-2- | N/A | no | 0.826 | 0.480 | 0.240 | 3e-27 |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function desciption |
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Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/503 (64%), Positives = 413/503 (82%), Gaps = 14/503 (2%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF +SVLG++GF IG+P+GL++GFF+ IYS+P+ E P PL E L DLLP
Sbjct: 1 MGFFTSVLGIIGF-VIGIPIGLILGFFVLIYSQPSHQ--EYPPARPLVETSISVLLDLLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLW+KNPDYERVDW N+F+S MWPYLDKA+C +R++ QP+F +Y G F IESIEFEN
Sbjct: 58 DIPLWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFEN 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT++G++ YETNE +L+ EP+++WAGNPNIVLVLK+LS RI VQLVDLQ FA
Sbjct: 118 LSLGTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAI 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
R+ LKPL+PTFPCF +VVSLME+PHVDFG+K+LGGD+MSIPGLY+++Q+ I + V+ +
Sbjct: 178 VRVALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y WPQ EIPILD+S+ ++KKPVG+LHV ++RA LLKKD LGTSDPYVKLSLTGEKLP
Sbjct: 238 YHWPQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KK+NLNPEWNE+FKL+VK+P SQ+LQL+VFDWDKVGGHDRLGMQ++PL+ + P E
Sbjct: 298 KKTTIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGE 357
Query: 361 TKEFTLDLLKHTN-ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
KEF LDL+K++N + D D K+RG++ V+L YVPF+E+SIK RK S ++S
Sbjct: 358 RKEFNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIK--------RRKESREEKS 409
Query: 420 S-DEEALSGAGLLSVLVQGAEDVEG-ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEF 477
S D++ LS AGLLSV VQ A+DVEG + H+NPYA++L++G+KK+TKM++KTRDP WNEEF
Sbjct: 410 SEDDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEF 469
Query: 478 QFMLDEPPLHEKIHIEVMSKRTG 500
QF L+EPP+ E I +EVMSK TG
Sbjct: 470 QFTLEEPPVKESIRVEVMSKGTG 492
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function description |
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Score = 558 bits (1438), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/502 (52%), Positives = 372/502 (74%), Gaps = 11/502 (2%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MG +S++LGV+GFGF G +G+++G++LFIY + D VE+P + PL ELD+ + + P
Sbjct: 1 MGIISTILGVIGFGF-GTTIGIVIGYYLFIYFQSTD--VEDPEIKPLVELDSETIATMFP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIP+WVKNPD++R+DWLN+ + MWPY+DKAIC ++ A+PI E +KI+S+EFE
Sbjct: 58 EIPMWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEM 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLG+LPP+ G++VY T++ +++ME +++WAGNPNI++V K + TVQ++DLQ++A
Sbjct: 118 LTLGSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYAT 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVP+FPCFA + VSLM++P VDFG+K+LG D+M+IPGLY+F+Q+ I VA +
Sbjct: 178 PRITLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP+T + I+D S A+KKPVG+L VKV++A KL KKD LG SDPYVKL+L+G+K+P
Sbjct: 238 YLWPKTLNVQIMDPSK-AMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPG 296
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKT VK NLNPEWNE F LVVKEPESQ LQL V+DW++VG HD++GM ++ LK LTP E
Sbjct: 297 KKTVVKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEE 356
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
K TL+LLK +P K RG++VVE+ Y PFK+D I + K
Sbjct: 357 PKLMTLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAP------ 410
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
E S GLL V+V AED+EG+ H NP +L++G++++TK ++K R+P W+E+FQF
Sbjct: 411 -EGTPSTGGLLVVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFP 469
Query: 481 LDEPPLHEKIHIEVMSKRTGVI 502
LDEPP+++K+H+EV+S + +I
Sbjct: 470 LDEPPINDKLHVEVISSSSRLI 491
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May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function description |
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Score = 554 bits (1427), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/504 (52%), Positives = 369/504 (73%), Gaps = 15/504 (2%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S++LG GFG +G+ LGL++G+ LF+Y PND V++P + + + D + +LP
Sbjct: 1 MGFFSTILGFCGFG-VGISLGLVIGYVLFVYLLPND--VKDPEIRSIADQDPKAMLRMLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVKNPD++RVDW+NRFL MWPYLDKAIC + A+PI +E K+KI+S+EFE
Sbjct: 58 EIPLWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLG+LPPT G++VY T+E +L+MEP L+WA NPNI++ +K + TVQ+VDLQ+FA
Sbjct: 118 LTLGSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQ 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVP+FPCFA + VSLME+PHVDFG+K+ G D+MSIPGLY+F+Q+ I VA +
Sbjct: 178 PRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANM 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP+T +PILD + A ++PVGI+HVKVVRA L KKD +G +DP+VK+ L+ +K+P
Sbjct: 238 YLWPKTLVVPILDPAK-AFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPS 296
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK KNLNPEWNE FK V++P++Q+L+ V+DW++VG +++GM ++ LK + P E
Sbjct: 297 KKTTVKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDE 356
Query: 361 TKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND 417
K FTL+L K + + P D K RGK+ VEL Y PF E+ + K + +
Sbjct: 357 HKAFTLELRKTLDGGEDGQPPD-KYRGKLEVELLYKPFTEEEM-----PKGFEETQAV-- 408
Query: 418 QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEF 477
Q + E + G+L V+V AEDVEG++H NPY I +KG++++TK ++K RDP WNEEF
Sbjct: 409 QKAPEGTPAAGGMLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEF 468
Query: 478 QFMLDEPPLHEKIHIEVMSKRTGV 501
FML+EPP+ EK+H+EV+S + +
Sbjct: 469 TFMLEEPPVREKLHVEVLSTSSRI 492
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Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
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Score = 258 bits (658), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 166/524 (31%), Positives = 285/524 (54%), Gaps = 35/524 (6%)
Query: 11 LGFGFIGLPLGLLVGFFL---FIYSKPNDDQVEEPLVTPLCELDTIPLFD----LLPEI- 62
+GF +G+ +GLLVG + F+ + + ++ L + + + D L PE
Sbjct: 1 MGF-IVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFY 59
Query: 63 PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLT 122
P WV + +++ WLN L+ +WPY+D+A ++ + +P+ ++Y + S+ F LT
Sbjct: 60 PSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLT 118
Query: 123 LGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLK-LLSFRITVQLVDLQIFAAP 181
LGT+ P G+ V + ++N + +E ++W GNPNIVL +K L+ + +Q+ ++
Sbjct: 119 LGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVF 178
Query: 182 RITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIY 241
R+ +PLV FPCF + VSL E+ +DF +K++GGDI +IPGL + I++ I V
Sbjct: 179 RLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSI 238
Query: 242 IWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
WP IPI+ D S + +K PVG+L VK+V+A L KD +G SDP+ K+ + +
Sbjct: 239 TWPVRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREK 297
Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
K++ +LNP WNE+F+ VV++ +Q L ++++D + V + +G + L L P
Sbjct: 298 TKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPG 357
Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS---IKFSSVSKKYSRKGSGN 416
+ K+ L L+K I +D K RG++ +EL Y+P+ + F + S + N
Sbjct: 358 KVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKN 415
Query: 417 DQSSDEEALSGA-------GLLSVLVQGAEDVEGEN---HNNPYAIILYK--GDKKRTKM 464
D + +E A S G+LSV V AE++ ++ +PY ++ K G K +T++
Sbjct: 416 DTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRV 475
Query: 465 IRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT---GVIGAC 505
+ + +P WN+ F F++ E LH+ + +EV T IG C
Sbjct: 476 VNDSLNPVWNQTFDFVV-EDGLHDMLVLEVWDHDTFGKDYIGRC 518
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
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Score = 238 bits (607), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 168/525 (32%), Positives = 268/525 (51%), Gaps = 44/525 (8%)
Query: 1 MGFLSSVLGVLGFG-FIGLPL--GLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFD 57
MGFL FG FIG+ + GL+V F + + + +
Sbjct: 1 MGFL--------FGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRK 52
Query: 58 LLPE--IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIES 115
LLP P WV ++++WLN L +WPY+++A ++++ +P+ ++Y+ + S
Sbjct: 53 LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LAS 111
Query: 116 IEFENLTLGTLPPTIYGIRVYETNE--NQLVMEPALRWAGNPNIVLVLK-LLSFRITVQL 172
++F TLGT+ P G+ + E+ N + ME ++W GNP IVL +K LL + +++
Sbjct: 112 LKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEV 171
Query: 173 VDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKC 232
++ R+ KPLV FPCF + SL E+ +DF +K++GG++ SIPG+ I++
Sbjct: 172 KNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEET 231
Query: 233 ITKYVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK 290
I + WP IPIL D S + + KPVG L VKVV+A L KD +G SDPY
Sbjct: 232 IRDAIEDSITWPVRKIIPILPGDYSDLEL-KPVGKLDVKVVQAKDLANKDMIGKSDPYAI 290
Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
+ + KKT +LNP WNE+F+ +V++ +Q L ++VFD + VG +G
Sbjct: 291 VFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQ 350
Query: 351 VPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIK-------- 401
VPL L P + K+ L L+K I +D K RG++ +EL Y P KE +K
Sbjct: 351 VPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYS 408
Query: 402 ---FSSVSKKYSRKGSGNDQ----SSDEEALSGAGLLSVLVQGAED---VEGENHNNPYA 451
V K S D +S ++ + G+LSV V AED V+ + +
Sbjct: 409 LTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFV 468
Query: 452 IILYKGD--KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
+I K K +T+++ + +P WN+ F F++ E LH+ + +EV
Sbjct: 469 VITLKKSETKSKTRVVPDSLNPVWNQTFDFVV-EDALHDLLTLEV 512
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 129/509 (25%), Positives = 231/509 (45%), Gaps = 48/509 (9%)
Query: 7 VLGVLGFGFIGLPLG-LLVGFFLFIYSKPNDDQVEEPLVTPLCELD----TIPLFDLLPE 61
+L V G++GL +L+ L + + + L L L+ + L +
Sbjct: 47 LLPVYALGYLGLSFSWVLLALGLLAWCRRSRGLKASRLCRALALLEDEEQAVRLGVRACD 106
Query: 62 IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENL 121
+P WV PD ER +WLN+ + MWP++ + I R T +P + + F +
Sbjct: 107 LPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANAHLSTFSFTKV 164
Query: 122 TLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
+G P + G++VY N + Q++++ + + GN I L +K R V+ +QI
Sbjct: 165 DVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIHG 222
Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
R+ L+PL+ P + + + +P ++ L +++ IPGL I ++
Sbjct: 223 TMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIISN 281
Query: 240 IYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYVK 290
+ P +P++ +A + P G+L + + A L KD G SDPY
Sbjct: 282 YLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGI 341
Query: 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
+ + + ++ V K+NL+P+WNE ++ +V E Q L++++FD D D LG +
Sbjct: 342 IRVGNQIF---QSKVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSLM 397
Query: 351 VPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKK 408
+ L + + FTLD + PK GK+ ++L ++ D+ +++ K
Sbjct: 398 IDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLKLEWLTLMPDA---ANLDKV 442
Query: 409 YSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHN-NPYAII-LYKGDKKRTKMIR 466
+ + DQ+SD LS A L+ L G+ N NP ++ + G K + IR
Sbjct: 443 LADIRADKDQASD--GLSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIR 500
Query: 467 -KTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
KT +P W E F F + P + + +EV
Sbjct: 501 YKTSEPVWEENFTFFIHN-PRRQDLEVEV 528
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May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 20/291 (6%)
Query: 59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEF 118
L ++P WV PD ERV+WLN+ + MWPY+ + + +P+ S K + F
Sbjct: 144 LQQLPAWVNFPDVERVEWLNKVVGQMWPYIGMYVEKMFQDKVEPLVRSSSAHLK--AFTF 201
Query: 119 ENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQ 176
+ LG P I G++ Y N + +++++ L + G+ I + +K + + +Q
Sbjct: 202 TKVHLGEKFPRINGVKSYTKNVDKREVILDLQLSYNGDVEINVEVKKM---CKAGVKGVQ 258
Query: 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKY 236
+ R+ L PL+P P + + ++RPH+D L +++ IPG+ F I
Sbjct: 259 LHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGL-TNVLEIPGVSDFSDSMIVDM 317
Query: 237 VAGIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD------FLGTSDP 287
+A + P + +P+ + A+ + P G+L + ++ A L+ KD G SDP
Sbjct: 318 IASHLVLPNRFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDP 377
Query: 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338
Y L + + K+ K+NLNP+W E ++ VV E Q L++ ++D D
Sbjct: 378 YAVLRIGNQNF---KSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLYDED 425
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May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/454 (25%), Positives = 211/454 (46%), Gaps = 43/454 (9%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWP++ + I R T +P + + F
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANTHLSTFSFTK 239
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G P I G++VY N + Q++++ + + GN I L +K R V+ +QI
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 297
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDVPGLNGLSDTIILDIIS 356
Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
+ P +P++ +A + P G+L + + A L KD G SDPY
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416
Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ + + ++ V K+NL+P+WNE ++ +V E Q L++++FD D D LG
Sbjct: 417 IIRVGNQIF---QSRVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSL 472
Query: 350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
++ L + + FTLD + PK GK+ + L ++ ++ S++ K
Sbjct: 473 MIDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLRLEWLTLMPNA---SNLDK 517
Query: 408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN-HNNPYAII-LYKGDKKRTKMI 465
+ + DQ++D LS A L+ L G+ +NP ++ + G K + I
Sbjct: 518 VLTDIKADKDQAND--GLSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKI 575
Query: 466 R-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498
R KT +P W E F F + P + + +EV ++
Sbjct: 576 RYKTNEPVWEENFTFFIHNPK-RQDLEVEVRDEQ 608
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q7ZWU7|EST2B_XENLA Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 210/485 (43%), Gaps = 68/485 (14%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWPY+ + I R T +P + + F
Sbjct: 114 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFSFTK 171
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G+ P I G++VY N + Q++++ + + G I L +K R V+ +Q+
Sbjct: 172 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 229
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 230 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 288
Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
+ P +P++ +A + P G+L + + A L+ KD G SDPY
Sbjct: 289 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 348
Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ L + ++ V K+NLNP+WNE ++ +V E Q L++++FD D D LG
Sbjct: 349 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 404
Query: 350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
L+ L + + FTL D GK+ ++L ++ K + V K
Sbjct: 405 LIDLVEVEKERVVDEWFTL------------DEATSGKLHLKLEWLTPKSTTENLDQVLK 452
Query: 408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHN---------------- 447
+ DQ++D LS A LL + + A + NH+
Sbjct: 453 SIK---ADKDQAND--GLS-AALLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKAGKK 506
Query: 448 -----NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGVI 502
NPY + + +K+ KT +P W + F F + P ++ +EV K
Sbjct: 507 IGSSPNPYVLFSVGHTVQESKVKYKTAEPVWEQTFTFFVHNP---KRQDLEVEVKDENHQ 563
Query: 503 GACGN 507
+ GN
Sbjct: 564 NSMGN 568
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus laevis (taxid: 8355) |
| >sp|Q5FWL4|EST2A_XENLA Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 207/483 (42%), Gaps = 64/483 (13%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWPY+ + I R T +P + + F
Sbjct: 110 DLPAWVHFPDIERAEWLNKTVKHMWPYICQFIEKLFRETIEPAV--RGANAHLSTFNFTK 167
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G+ P I G++VY N + Q++++ + + G I L +K R V+ +Q+
Sbjct: 168 IDMGSQPLRINGVKVYTENVDKRQIILDLQISFVGETEIDLEVKRYFCRAGVK--SIQLH 225
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 226 GTMRVILEPLIGDVPIVGALSIFFLRKPLLEINWTGL-TNMLDMPGLNGLSDTIILDIIS 284
Query: 239 GIYIWPQTYEIPILDASSVAIKK---PVGILHVKVVRASKLLKKDFL------GTSDPYV 289
+ P +P++ +A + P G+L + + A L+ KD G SDPY
Sbjct: 285 NYLVLPNRITVPLVSDVQIAQLRFPIPKGVLRIHFLEAQDLMWKDTYMKGLVKGKSDPYG 344
Query: 290 KLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ L + ++ V K+NLNP+WNE ++ +V E Q L++++FD D D LG
Sbjct: 345 VVRLGNQVF---QSKVIKENLNPKWNEVYEALVHEHPGQELEIELFDED-TDKDDFLGSL 400
Query: 350 LVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKY 409
L+ L + + L D GK+ ++L ++ + V K
Sbjct: 401 LIDLVEVEKERVVDEWFSL----------DEATSGKLHLKLEWLTPNSTTDNLDQVLKSI 450
Query: 410 SRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHN------------------ 447
+ DQ++D LS A LL + + A + NH+
Sbjct: 451 K---ADKDQAND--GLSSA-LLILYLDSARSLPNNPLEINHDGMKKAAVEKAKKAGKKIG 504
Query: 448 ---NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGVIGA 504
NPY + + +K+ KT +P W + F F + P ++ +EV K +
Sbjct: 505 SSPNPYVLFSVGHAVQESKVKYKTAEPLWEQTFTFFVHNP---KRQDLEVEVKDENHQSS 561
Query: 505 CGN 507
GN
Sbjct: 562 MGN 564
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| 224097856 | 547 | predicted protein [Populus trichocarpa] | 0.978 | 0.906 | 0.763 | 0.0 | |
| 255588268 | 541 | calcium lipid binding protein, putative | 0.970 | 0.909 | 0.741 | 0.0 | |
| 224113059 | 544 | predicted protein [Populus trichocarpa] | 0.962 | 0.897 | 0.740 | 0.0 | |
| 225449024 | 544 | PREDICTED: extended synaptotagmin-2 [Vit | 0.980 | 0.913 | 0.718 | 0.0 | |
| 356535625 | 545 | PREDICTED: tricalbin-2-like [Glycine max | 0.976 | 0.908 | 0.702 | 0.0 | |
| 356574609 | 545 | PREDICTED: tricalbin-1-like [Glycine max | 0.976 | 0.908 | 0.700 | 0.0 | |
| 359481536 | 546 | PREDICTED: extended synaptotagmin-2-like | 0.980 | 0.910 | 0.664 | 0.0 | |
| 297741612 | 547 | unnamed protein product [Vitis vinifera] | 0.980 | 0.908 | 0.659 | 0.0 | |
| 449527095 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.968 | 0.895 | 0.659 | 0.0 | |
| 449464400 | 548 | PREDICTED: synaptotagmin-3-like [Cucumis | 0.968 | 0.895 | 0.657 | 0.0 |
| >gi|224097856|ref|XP_002311084.1| predicted protein [Populus trichocarpa] gi|222850904|gb|EEE88451.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/499 (76%), Positives = 443/499 (88%), Gaps = 3/499 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFL++++ +LGFG IGLP GLL+GFFLF+YSKP D V++P+V PL ELDT L D+LP
Sbjct: 1 MGFLNTLVELLGFG-IGLPFGLLIGFFLFVYSKPKD-TVKDPVVRPLHELDTGALLDILP 58
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLWVK PDYERVDWLN+FLSDMWPYLDKA+CA +R T Q +F EY GK+KI++IEFE+
Sbjct: 59 DIPLWVKCPDYERVDWLNKFLSDMWPYLDKAVCAMIRRTTQSMFAEYIGKYKIQAIEFEH 118
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPPTI+G++VYETNE LVMEPA+RWAGNPNIVLVLKL+S ++TVQLVDLQIFAA
Sbjct: 119 LTLGTLPPTIHGLKVYETNEKDLVMEPAIRWAGNPNIVLVLKLMSLQVTVQLVDLQIFAA 178
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVPTFPCFA ++VSLMERPHVDFG+KILGGD+MSIPGLY+F+Q+ I K VA +
Sbjct: 179 PRVALKPLVPTFPCFANILVSLMERPHVDFGLKILGGDVMSIPGLYRFVQEMIKKQVASL 238
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT +IPILD+S+V IKKPVGILHVKVVRA KLLK D LGTSDPYVKL+LTGEKLP
Sbjct: 239 YLWPQTLDIPILDSSTVIIKKPVGILHVKVVRAKKLLKADLLGTSDPYVKLNLTGEKLPA 298
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQLVPLK+LTP E
Sbjct: 299 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQLVPLKVLTPRE 358
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
TK+FTLDLLKHTNISD +D KQRG+IVVELTYVPF+EDSIKFS GS + +S+
Sbjct: 359 TKDFTLDLLKHTNISDSRDKKQRGQIVVELTYVPFREDSIKFSGPLDGNGEMGSVSGRST 418
Query: 421 DEEA-LSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQF 479
EEA LSGAGLLSV+VQGAEDVEG+ H+NPYA++L++G++KRTK I+KTRDP WNEEFQF
Sbjct: 419 PEEAPLSGAGLLSVMVQGAEDVEGKRHHNPYALVLFRGERKRTKTIKKTRDPRWNEEFQF 478
Query: 480 MLDEPPLHEKIHIEVMSKR 498
LD+PPLHE I IEVMSKR
Sbjct: 479 TLDQPPLHELIRIEVMSKR 497
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255588268|ref|XP_002534553.1| calcium lipid binding protein, putative [Ricinus communis] gi|223525050|gb|EEF27829.1| calcium lipid binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/499 (74%), Positives = 441/499 (88%), Gaps = 7/499 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLS+VLG LGFGF LP+GLL+GFFLF+YS+P V++P+V PL ELD+ L D+LP
Sbjct: 1 MGFLSTVLGFLGFGFG-LPIGLLLGFFLFVYSQPEHHDVKDPVVRPLHELDSSTLEDILP 59
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+ L DMWPYLDKAIC+ +R+TA+PIF EY G++ IE+IEFE+
Sbjct: 60 EIPLWVKCPDYERVDWLNKLLLDMWPYLDKAICSTIRSTAEPIFAEYIGQYMIEAIEFEH 119
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPP I+G++VYETNE LVMEPA++WAGNPNI+L++KL+S + VQL+DLQIFAA
Sbjct: 120 LTLGTLPPVIHGLKVYETNEKDLVMEPAIKWAGNPNIILMIKLMSLPVRVQLIDLQIFAA 179
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRI LKPLVP+FPCFA +VVSLMERPHVDFG+K+LGGD+MSIPGLY+ +Q+ I K VA +
Sbjct: 180 PRIALKPLVPSFPCFANIVVSLMERPHVDFGLKVLGGDLMSIPGLYRLVQETIKKQVARL 239
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQ +IP+LD+S+VAIKKPVGILHVKVVRA KLLK D LGTSDPYVKLSLTGEKLP
Sbjct: 240 YLWPQFLDIPVLDSSTVAIKKPVGILHVKVVRAMKLLKADLLGTSDPYVKLSLTGEKLPA 299
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVKKKNLNPEWNENFKL+VK+P+SQ+LQLQVFDWDKVGGHDRLGMQ+VPLK+LTP E
Sbjct: 300 KKTTVKKKNLNPEWNENFKLIVKDPQSQVLQLQVFDWDKVGGHDRLGMQVVPLKVLTPGE 359
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEF LDLLKHTNISDP+D K+RG+IVVELT+VPFK+DS KF+ G+++SS
Sbjct: 360 AKEFILDLLKHTNISDPQDKKRRGQIVVELTFVPFKQDSAKFTEPV------DGGSEKSS 413
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
DEE LSGAGLLSV+VQGAEDVEGE+H+NPYA++L++G+KK+TKMIRKTRDP WNEEFQF
Sbjct: 414 DEEKLSGAGLLSVIVQGAEDVEGEHHSNPYALVLFRGEKKKTKMIRKTRDPHWNEEFQFT 473
Query: 481 LDEPPLHEKIHIEVMSKRT 499
LD+PPL EK+HI+VMSKRT
Sbjct: 474 LDQPPLREKMHIDVMSKRT 492
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113059|ref|XP_002316376.1| predicted protein [Populus trichocarpa] gi|222865416|gb|EEF02547.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/508 (74%), Positives = 431/508 (84%), Gaps = 20/508 (3%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFL++ L LGFG IGLP GLL+GFFLF+YSKP D V++P+V PL ELDT L D+LP
Sbjct: 1 MGFLNAFLEFLGFG-IGLPFGLLIGFFLFVYSKPKD--VKDPVVRPLHELDTDALLDILP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
+IPLWVK PDYERVDWLN+FL DMWPYLDKAICA +R+T +P+F EY GK+KIE+IEFE+
Sbjct: 58 DIPLWVKCPDYERVDWLNKFLLDMWPYLDKAICAMIRSTTKPMFAEYIGKYKIEAIEFEH 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
LTLGTLPP I G++VYET E LVMEPA+RWAGNPNIVLVL+LLS R+ QLVDLQIFAA
Sbjct: 118 LTLGTLPPIIQGLKVYETMEKDLVMEPAIRWAGNPNIVLVLQLLSVRLRFQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVPTFPCFA +VVSLMERPHVDFG+KILGGD+MSIPGLY+ I K VA +
Sbjct: 178 PRVALKPLVPTFPCFANIVVSLMERPHVDFGLKILGGDVMSIPGLYRL--DMIKKQVASL 235
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT +IP++DAS++ IKKPVGILHVKVVRA KLLK D LGTSDPYVKL LTGEKLP
Sbjct: 236 YLWPQTLDIPVIDASTMVIKKPVGILHVKVVRAKKLLKADILGTSDPYVKLCLTGEKLPA 295
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTT+KKKNLNPEWNENFKLVVK+PESQ LQLQVFDWDKVGGHDRLGMQ VPLK+LTP E
Sbjct: 296 KKTTIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQFVPLKVLTPRE 355
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGND--- 417
TKEFTLDLLKHTNISD +D KQRG+IV+ELTYVPF+EDSI+FS GND
Sbjct: 356 TKEFTLDLLKHTNISDSQDKKQRGQIVLELTYVPFREDSIEFSG-------PLDGNDRRG 408
Query: 418 -----QSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPA 472
SS +E+LSGAGLLSV+VQGAEDVEG++H NPYA++ ++G++KRTKMI+KTRDP
Sbjct: 409 SASGRSSSGDESLSGAGLLSVIVQGAEDVEGKHHINPYALVHFRGERKRTKMIKKTRDPR 468
Query: 473 WNEEFQFMLDEPPLHEKIHIEVMSKRTG 500
WNEEFQF LD+PPLHE I IEVMSKRT
Sbjct: 469 WNEEFQFTLDQPPLHELIRIEVMSKRTS 496
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449024|ref|XP_002272997.1| PREDICTED: extended synaptotagmin-2 [Vitis vinifera] gi|296086005|emb|CBI31446.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/501 (71%), Positives = 438/501 (87%), Gaps = 4/501 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLSS+L ++GFG IG+P GLLVGFFLF+YS+P D V++P V PL ELD+ L DLLP
Sbjct: 1 MGFLSSLLDIVGFG-IGIPFGLLVGFFLFVYSQPKD--VQDPDVRPLSELDSSTLMDLLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+P WVKNP+Y+RVDWLN+F+ +MWPYLDKAIC +R+ AQPIF EY G ++IE+IEFE
Sbjct: 58 ELPFWVKNPNYDRVDWLNKFILNMWPYLDKAICDTIRSMAQPIFAEYIGMYQIEAIEFEK 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPP ++GI+VYETNE +L MEPA++WAGNPNI+LVLK L FRIT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPILHGIKVYETNEKELAMEPAIKWAGNPNIILVLKWLPFRITIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITLKPLVPTFPCFA++V+SLME+PHVDFG+KILGGDIMSIPGLY+F+Q+ I + VA +
Sbjct: 178 PRITLKPLVPTFPCFASLVLSLMEKPHVDFGLKILGGDIMSIPGLYRFVQETIKREVAKL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILDA++ AIKKPVGILHVKVVRA KLLK DFLG SDPYVKLSL+GE+LP
Sbjct: 238 YLWPQTLEIPILDAATGAIKKPVGILHVKVVRALKLLKMDFLGASDPYVKLSLSGERLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FKL+V++P++Q+LQL V+DWDKVG HD+LGMQLVPLKLLTPHE
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLIVRDPQAQVLQLYVYDWDKVGAHDKLGMQLVPLKLLTPHE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
T+EFTLDL K+TN+SDP+ KQRGKIVVELT+ PFKED +S Y RK S ++S
Sbjct: 358 TQEFTLDLFKNTNLSDPQQ-KQRGKIVVELTFDPFKEDHECYSGPLDGYGRKESRISRAS 416
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
D++ SGAGLL V +QGAEDVEG+ HNNPYA+IL++G+KK+TKM++KTRDP WNEEFQFM
Sbjct: 417 DDDTPSGAGLLLVTIQGAEDVEGQRHNNPYAVILFRGEKKKTKMMKKTRDPQWNEEFQFM 476
Query: 481 LDEPPLHEKIHIEVMSKRTGV 501
L+EPPL EKIHI+V+S+R+G+
Sbjct: 477 LEEPPLSEKIHIQVISQRSGI 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535625|ref|XP_003536345.1| PREDICTED: tricalbin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/498 (70%), Positives = 424/498 (85%), Gaps = 3/498 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGFLSS LGV GF +G+PLGLLVGFFLF+YS+ +V++P+V P+ EL L +LLP
Sbjct: 1 MGFLSSFLGVFGFA-VGIPLGLLVGFFLFVYSETK--RVKDPVVRPISELGPNSLQELLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+FL DMWP+LD AIC +R+T QPIF EY GK++I++I+F+
Sbjct: 58 EIPLWVKTPDYERVDWLNKFLLDMWPFLDTAICKIIRSTTQPIFAEYIGKYQIKAIDFDE 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT+ G++V ETNE +LVME ++WAGNPNIV+ L + S +IT+QLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGMKVLETNEKELVMEQVIKWAGNPNIVVSLYVSSLKITIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PRITL+PLVPTFPCFA +VVSLME+PHVDFG+ + GGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRITLRPLVPTFPCFANIVVSLMEKPHVDFGMNVSGGDIMSIPGLYRFVQETIKKQVANL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILD S+VAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP
Sbjct: 238 YLWPQTLEIPILDESTVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FK+VVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L P+E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKIVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLNPYE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEF LDLLK TN+++ K RGKIVV+LT+VPFKEDS KF S+ YSRK SG D S
Sbjct: 358 NKEFILDLLKDTNLNETPHKKPRGKIVVDLTFVPFKEDSNKFGGPSEGYSRKESGIDIVS 417
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
D+E GAGLLS+++Q AE+VEG++HNNP+A++ ++G+KKRTK ++KTR P WNEEFQFM
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKTMKKTRHPRWNEEFQFM 477
Query: 481 LDEPPLHEKIHIEVMSKR 498
L+EPPLHEKIHIEVMSKR
Sbjct: 478 LEEPPLHEKIHIEVMSKR 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574609|ref|XP_003555438.1| PREDICTED: tricalbin-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/498 (70%), Positives = 420/498 (84%), Gaps = 3/498 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MG +SS LG+LGF +G+PLGL VGFFLF+YS+ V++P+V P+ EL L +LLP
Sbjct: 1 MGLVSSFLGILGFA-VGIPLGLFVGFFLFVYSETK--HVKDPVVRPISELGPNALQELLP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK PDYERVDWLN+FL D WP+LD AIC +R+ AQPIF EY GK++I++IEF+
Sbjct: 58 EIPLWVKTPDYERVDWLNKFLLDTWPFLDTAICKIIRSRAQPIFFEYIGKYQIKAIEFDK 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L+LGTLPPT+ GI+V ETN +LVME ++WAGNP IVL + + S +ITVQLVDLQIFAA
Sbjct: 118 LSLGTLPPTVCGIKVLETNGKELVMEQVIKWAGNPEIVLSVYVASLKITVQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+TL+PLVPTFPCFA +VVSLME+PHVDFG+ +LGGDIMSIPGLY+F+Q+ I K VA +
Sbjct: 178 PRVTLRPLVPTFPCFANIVVSLMEKPHVDFGMNVLGGDIMSIPGLYRFVQETIKKQVANL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WPQT EIPILD SSVAIKKPVGILHV VVRA KLLK D LGTSDPYVKLSLTG+KLP
Sbjct: 238 YLWPQTLEIPILDESSVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPA 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK+KNLNPEWNE FKLVVK+P+SQ+LQLQV+DWDKVGGHD+LGMQLVPLK+L +E
Sbjct: 298 KKTTVKRKNLNPEWNEKFKLVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLKAYE 357
Query: 361 TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSS 420
KEFTLDLLK TN+++ K RGKIVV+LT+VPFKEDS KF S+ YSRK SG D S
Sbjct: 358 NKEFTLDLLKDTNLNETPRKKPRGKIVVDLTFVPFKEDSSKFGGPSEGYSRKESGIDIVS 417
Query: 421 DEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFM 480
D+E GAGLLS+++Q AE+VEG++HNNP+A++ ++G+KKRTKM++KTR P WNEEFQFM
Sbjct: 418 DDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKMMKKTRHPRWNEEFQFM 477
Query: 481 LDEPPLHEKIHIEVMSKR 498
L+EPP HEKIHIEVMSKR
Sbjct: 478 LEEPPQHEKIHIEVMSKR 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481536|ref|XP_002276374.2| PREDICTED: extended synaptotagmin-2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/501 (66%), Positives = 427/501 (85%), Gaps = 4/501 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V P++ PL +LD+ L DLL
Sbjct: 1 MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC +R+T +PIF EY GKF+I+SI+FE
Sbjct: 58 EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117
Query: 121 LTLGTLPPTIYGIRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFA 179
L+LGTL P ++GI+ ETNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI
Sbjct: 118 LSLGTLSPIVHGIKAQETNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQISM 177
Query: 180 APRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAG 239
PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA
Sbjct: 178 VPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVAS 237
Query: 240 IYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP 299
+Y+WPQT E+PILDA IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+LP
Sbjct: 238 LYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLP 297
Query: 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP+
Sbjct: 298 AKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTPN 357
Query: 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQS 419
TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS + ++ R SG +++
Sbjct: 358 MTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGERA 417
Query: 420 SDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQF 479
+++ SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K TK+I+KTRDP WNEEF+F
Sbjct: 418 TEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPCWNEEFEF 477
Query: 480 MLDEPPLHEKIHIEVMSKRTG 500
ML+E P+ EKIHIEVMSKR G
Sbjct: 478 MLEEAPVKEKIHIEVMSKRKG 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741612|emb|CBI32744.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/502 (65%), Positives = 425/502 (84%), Gaps = 5/502 (0%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF+S++LG++GFG +G+P GL++G+F+FI+++P D +V P++ PL +LD+ L DLL
Sbjct: 1 MGFVSALLGIIGFG-VGIPFGLVLGYFIFIHNEPQDVKV--PIIRPLHDLDSDSLLDLLD 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
E+PLWVK PDY+R DWLN+F+ DMWPYLDKAIC +R+T +PIF EY GKF+I+SI+FE
Sbjct: 58 EMPLWVKTPDYDRADWLNKFIFDMWPYLDKAICGIIRSTTEPIFAEYIGKFQIKSIDFET 117
Query: 121 LTLGTLPPTIYG-IRVYETNE-NQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
L+LGTL P ++G +TNE N+L++EPA+RWAGNPNI+LVLKLLS RIT+QL DLQI
Sbjct: 118 LSLGTLSPIVHGKYSSIKTNEVNELILEPAIRWAGNPNIILVLKLLSLRITLQLTDLQIS 177
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
PRI LKPLVPTFPCFA++VVSLME+PHVDFG+K+LGGDIM+IPGLYQFIQK I + VA
Sbjct: 178 MVPRIVLKPLVPTFPCFASVVVSLMEKPHVDFGLKLLGGDIMAIPGLYQFIQKTIRRQVA 237
Query: 239 GIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL 298
+Y+WPQT E+PILDA IKKPVG+LHVKVVRA KLLK D LG SDPYVKLSL+GE+L
Sbjct: 238 SLYLWPQTLEMPILDALVAPIKKPVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERL 297
Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
P KKT++K K L+PEWNE+FKL+VK+P+SQ+LQL V+DW+KVG HD+LGMQ+VPL+LLTP
Sbjct: 298 PAKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKVGMHDKLGMQVVPLRLLTP 357
Query: 359 HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
+ TK+FTLDLLK+TN +DP + K RGKIVVE+T+ PFKEDS +FS + ++ R SG ++
Sbjct: 358 NMTKQFTLDLLKNTNPNDPHNKKYRGKIVVEMTFNPFKEDSERFSGLLNEHMRNDSGGER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQ 478
++++ SGAGLL V++QGAE VEG++HNNPYAIIL+KG++K TK+I+KTRDP WNEEF+
Sbjct: 418 ATEDVPSSGAGLLLVVIQGAEHVEGKHHNNPYAIILFKGERKNTKLIKKTRDPCWNEEFE 477
Query: 479 FMLDEPPLHEKIHIEVMSKRTG 500
FML+E P+ EKIHIEVMSKR G
Sbjct: 478 FMLEEAPVKEKIHIEVMSKRKG 499
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527095|ref|XP_004170548.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/496 (65%), Positives = 414/496 (83%), Gaps = 5/496 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S ++G++GFG IG+PLGL+VGFF FIYSKP D+V++P++ P+ ELD+ L +++P
Sbjct: 1 MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK+PD++RVDWLN+FL MWP LDKAIC+++R A+P+F EY GKF+I+SIEFE
Sbjct: 58 EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S RI +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLRIRIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVP FPCF +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP EIPILDAS A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357
Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
TKE TLDLLK +TNI++ ++ K RG++VVEL + PF+E+S KFSS S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQ 478
++ + GAGLLSV +QGA VEG+ H+NPYA++ ++G+KK+TKM++K RDP WNE+F+
Sbjct: 418 DLQDDFVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGEKKKTKMVKKCRDPVWNEDFE 477
Query: 479 FMLDEPPLHEKIHIEV 494
FML+EPPL EKIHIEV
Sbjct: 478 FMLEEPPLGEKIHIEV 493
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464400|ref|XP_004149917.1| PREDICTED: synaptotagmin-3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/496 (65%), Positives = 414/496 (83%), Gaps = 5/496 (1%)
Query: 1 MGFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSKPNDDQVEEPLVTPLCELDTIPLFDLLP 60
MGF S ++G++GFG IG+PLGL+VGFF FIYSKP D+V++P++ P+ ELD+ L +++P
Sbjct: 1 MGFFSILMGIVGFG-IGIPLGLVVGFFFFIYSKP--DEVKDPMIRPIYELDSDSLEEVIP 57
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
EIPLWVK+PD++RVDWLN+FL MWP LDKAIC+++R A+P+F EY GKF+I+SIEFE
Sbjct: 58 EIPLWVKHPDFDRVDWLNKFLEGMWPCLDKAICSSIRGMAEPMFAEYIGKFQIQSIEFET 117
Query: 121 LTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAA 180
L LGTL P +YGI+V+ETNEN++VME A++WAGNPNIVL+L+L S +I +QLVDLQIFAA
Sbjct: 118 LLLGTLSPKLYGIKVHETNENEIVMETAIKWAGNPNIVLILRLFSLQIRIQLVDLQIFAA 177
Query: 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
PR+ LKPLVP FPCF +VVSL+E+PHVDFG+KILGGDIMSIPGLYQF+Q+ I K V+ +
Sbjct: 178 PRVALKPLVPAFPCFTNIVVSLLEKPHVDFGMKILGGDIMSIPGLYQFVQETIRKQVSNL 237
Query: 241 YIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW 300
Y+WP EIPILDAS A K+PVGILHV VV+A KL K D LGTSDPYVKLSL+GE+LP
Sbjct: 238 YLWPHVLEIPILDASVAATKRPVGILHVNVVKALKLSKMDLLGTSDPYVKLSLSGERLPS 297
Query: 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
KKTTVK NLNP WNE FKL+VK+PESQ+LQLQV+DWDKVGGHDRLGMQLVPLK+LTP+E
Sbjct: 298 KKTTVKMNNLNPIWNEKFKLIVKDPESQVLQLQVYDWDKVGGHDRLGMQLVPLKVLTPYE 357
Query: 361 TKEFTLDLLK--HTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQ 418
TKE TLDLLK +TNI++ ++ K RG++VVEL + PF+E+S KFSS S +++
Sbjct: 358 TKELTLDLLKNTNTNINEYQNKKPRGQLVVELKFTPFREESSKFSSQLDGCGSMVSRDER 417
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQ 478
++ + GAGLLSV +QGA VEG+ H+NPYA++ ++G+KK+TKM++K RDP WNE+F+
Sbjct: 418 DLQDDCVGGAGLLSVKIQGATSVEGKRHSNPYAVMHFRGEKKKTKMVKKCRDPVWNEDFE 477
Query: 479 FMLDEPPLHEKIHIEV 494
FML+EPPL EKIHIEV
Sbjct: 478 FMLEEPPLGEKIHIEV 493
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| TAIR|locus:2146688 | 540 | SYTC "AT5G04220" [Arabidopsis | 0.911 | 0.855 | 0.615 | 5.7e-162 | |
| TAIR|locus:2198581 | 537 | SYTB "AT1G20080" [Arabidopsis | 0.913 | 0.862 | 0.501 | 3.1e-131 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.873 | 0.791 | 0.321 | 1.8e-62 | |
| TAIR|locus:2100992 | 510 | NTMC2T4 [Arabidopsis thaliana | 0.670 | 0.666 | 0.356 | 8.9e-54 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.800 | 0.713 | 0.323 | 3.8e-53 | |
| TAIR|locus:2047027 | 256 | AT2G21010 "AT2G21010" [Arabido | 0.408 | 0.808 | 0.406 | 7.3e-43 | |
| FB|FBgn0039208 | 849 | Esyt2 [Drosophila melanogaster | 0.820 | 0.489 | 0.243 | 5.4e-35 | |
| WB|WBGene00020443 | 713 | esyt-2 [Caenorhabditis elegans | 0.601 | 0.427 | 0.271 | 1.7e-32 | |
| MGI|MGI:1261845 | 845 | Esyt2 "extended synaptotagmin- | 0.808 | 0.485 | 0.252 | 2.3e-30 | |
| UNIPROTKB|A0FGR8 | 921 | ESYT2 "Extended synaptotagmin- | 0.808 | 0.445 | 0.250 | 6.7e-29 |
| TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
Identities = 291/473 (61%), Positives = 372/473 (78%)
Query: 30 IYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLD 89
IYS+P+ E P PL E L DLLP+IPLW+KNPDYERVDW N+F+S MWPYLD
Sbjct: 29 IYSQPSHQ--EYPPARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPYLD 86
Query: 90 KAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPAL 149
KA+C +R++ QP+F +Y G F IESIEFENL+LGTLPPT++G++ YETNE +L+ EP++
Sbjct: 87 KAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEPSI 146
Query: 150 RWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVD 209
+WAGNPNIVLVLK+LS RI VQLVDLQ FA R+ LKPL+PTFPCF +VVSLME+PHVD
Sbjct: 147 KWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPHVD 206
Query: 210 FGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVK 269
FG+K+LGGD+MSIPGLY+++Q+ I + V+ +Y WPQ EIPILD+S+ ++KKPVG+LHV
Sbjct: 207 FGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVKKPVGLLHVS 266
Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQI 329
++RA LLKKD LGTSDPYVKLSLTGE EWNE+FKL+VK+P SQ+
Sbjct: 267 ILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNSQV 326
Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI-SDPKDMKQRGKIVV 388
LQL+VFDWDKVGGHDRLGMQ++PL+ + P E KEF LDL+K++N+ D D K+RG++ V
Sbjct: 327 LQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRLEV 386
Query: 389 ELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN-HN 447
+L YVPF+E+SIK +K SR+ S D++ LS AGLLSV VQ A+DVEG+ H+
Sbjct: 387 DLRYVPFREESIK----RRKESRE---EKSSEDDDFLSQAGLLSVAVQSAKDVEGKKKHS 439
Query: 448 NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG 500
NPYA++L++G+KK+TKM++KTRDP WNEEFQF L+EPP+ E I +EVMSK TG
Sbjct: 440 NPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKESIRVEVMSKGTG 492
|
|
| TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
Identities = 237/473 (50%), Positives = 336/473 (71%)
Query: 30 IYSKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLD 89
IY + D VE+P + PL ELD+ + + PEIP+WVKNPD++R+DWLN+ + MWPY+D
Sbjct: 29 IYFQSTD--VEDPEIKPLVELDSETIATMFPEIPMWVKNPDFDRIDWLNKLIGHMWPYMD 86
Query: 90 KAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYETNENQLVMEPAL 149
KAIC ++ A+PI E +KI+S+EFE LTLG+LPP+ G++VY T++ +++ME ++
Sbjct: 87 KAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPSFQGMKVYATDDKEIIMELSV 146
Query: 150 RWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVD 209
+WAGNPNI++V K + TVQ++DLQ++A PRITLKPLVP+FPCFA + VSLM++P VD
Sbjct: 147 KWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRITLKPLVPSFPCFANIFVSLMDKPQVD 206
Query: 210 FGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVK 269
FG+K+LG D+M+IPGLY+F+Q+ I VA +Y+WP+T + I+D S A+KKPVG+L VK
Sbjct: 207 FGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIMDPSK-AMKKPVGLLSVK 265
Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQI 329
V++A KL KKD LG SDPYVKL+L+G+ EWNE F LVVKEPESQ
Sbjct: 266 VIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQE 325
Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVE 389
LQL V+DW++VG HD++GM ++ LK LTP E K TL+LLK +P K RG++VVE
Sbjct: 326 LQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLMTLELLKSMEPKEPVSEKSRGQLVVE 385
Query: 390 LTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNP 449
+ Y PFK+D I + K + E S GLL V+V AED+EG+ H NP
Sbjct: 386 VEYKPFKDDDIPENIDDPNAVEK-------APEGTPSTGGLLVVIVHEAEDLEGKYHTNP 438
Query: 450 YAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGVI 502
+L++G++++TK ++K R+P W+E+FQF LDEPP+++K+H+EV+S + +I
Sbjct: 439 SVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLHVEVISSSSRLI 491
|
|
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 151/470 (32%), Positives = 255/470 (54%)
Query: 58 LLPEI-PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESI 116
L PE P WV + +++ WLN L+ +WPY+D+A ++ + +P+ ++Y + S+
Sbjct: 54 LPPEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASL 112
Query: 117 EFENLTLGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLK-LLSFRITVQLVDL 175
F LTLGT+ P G+ V + ++N + +E ++W GNPNIVL +K L+ + +Q+ ++
Sbjct: 113 TFSKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNI 172
Query: 176 QIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITK 235
R+ +PLV FPCF + VSL E+ +DF +K++GGDI +IPGL + I++ I
Sbjct: 173 GFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRD 232
Query: 236 YVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSL 293
V WP IPI+ D S + +K PVG+L VK+V+A L KD +G SDP+ K+ +
Sbjct: 233 AVEDSITWPVRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFI 291
Query: 294 TGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
WNE+F+ VV++ +Q L ++++D + V + +G + L
Sbjct: 292 RPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRL 351
Query: 354 KLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE-DSI--KFSSVSKKYS 410
L P + K+ L L+K I +D K RG++ +EL Y+P+ + I F + S
Sbjct: 352 CELEPGKVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSL 409
Query: 411 RKGSGNDQSSDEEALSGA-------GLLSVLVQGAEDVEGEN---HNNPYAIILYK--GD 458
+ ND + +E A S G+LSV V AE++ ++ +PY ++ K G
Sbjct: 410 ERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGA 469
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRT---GVIGAC 505
K +T+++ + +P WN+ F F++++ LH+ + +EV T IG C
Sbjct: 470 KSKTRVVNDSLNPVWNQTFDFVVEDG-LHDMLVLEVWDHDTFGKDYIGRC 518
|
|
| TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 126/353 (35%), Positives = 191/353 (54%)
Query: 63 PLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLT 122
P W+ P +E+V WLN+ LS MWPY+ +A +R + +P+ ++Y I S++F LT
Sbjct: 59 PQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPP-GITSLKFSKLT 117
Query: 123 LGTLPPTIYGIRVYETNENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIFAAPR 182
LG + P I GIRV E Q+ M+ LRW G+PNIVL + L I +QL DLQ+F R
Sbjct: 118 LGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVAR 177
Query: 183 ITLKPLVPTFPCFATMVVSLME--RPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGI 240
+ + L PC + +VV+L+ +P +D+ +K +GG + +IPGL I + V +
Sbjct: 178 VIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDM 236
Query: 241 YIWPQTYEIPI----LDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE 296
WP +PI +D S + +K P G L V VV+A+ L K+ +G SDPY + +
Sbjct: 237 LQWPHRIVVPIGGIPVDLSDLELK-PQGKLIVTVVKATNLKNKELIGKSDPYATIYI--R 293
Query: 297 XXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
W++ F+L+ ++ E+Q L ++VFD D VG +RLG+ +PL L
Sbjct: 294 PVFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFDKD-VGQDERLGLVKLPLSSL 352
Query: 357 TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIKFSSVSKK 408
TKE L+LL + KD K RG I +++ Y F KE+ + KK
Sbjct: 353 EAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQMAALEDEKK 405
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 141/436 (32%), Positives = 227/436 (52%)
Query: 58 LLPE--IPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIES 115
LLP P WV ++++WLN L +WPY+++A ++++ +P+ ++Y+ + S
Sbjct: 53 LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LAS 111
Query: 116 IEFENLTLGTLPPTIYGIRVYETNE--NQLVMEPALRWAGNPNIVLVLK-LLSFRITVQL 172
++F TLGT+ P G+ + E+ N + ME ++W GNP IVL +K LL + +++
Sbjct: 112 LKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEV 171
Query: 173 VDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKC 232
++ R+ KPLV FPCF + SL E+ +DF +K++GG++ SIPG+ I++
Sbjct: 172 KNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEET 231
Query: 233 ITKYVAGIYIWPQTYEIPIL--DASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVK 290
I + WP IPIL D S + +K PVG L VKVV+A L KD +G SDPY
Sbjct: 232 IRDAIEDSITWPVRKIIPILPGDYSDLELK-PVGKLDVKVVQAKDLANKDMIGKSDPYAI 290
Query: 291 LSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQL 350
+ + WNE+F+ +V++ +Q L ++VFD + VG +G
Sbjct: 291 VFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQ 350
Query: 351 VPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF-KEDSIK--FS---- 403
VPL L P + K+ L L+K I +D K RG++ +EL Y P KE +K F+
Sbjct: 351 VPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYS 408
Query: 404 -SVSKKYSRKGSGNDQSSDEEALSGA--------GLLSVLVQGAEDVEGENH-NNPYAII 453
++ +K + S + ++D + L + G+LSV V AED+ + A +
Sbjct: 409 LTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFV 468
Query: 454 LYKGDKKRTKMIRKTR 469
+ K TK KTR
Sbjct: 469 VITLKKSETKS--KTR 482
|
|
| TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 91/224 (40%), Positives = 142/224 (63%)
Query: 282 LGTSDPYVKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVG 341
+G +PYV++ L+ + EWNE FK V++P++Q+L+ V+ W+K+G
Sbjct: 1 MGMINPYVQIELSEDKISSKKTTVKHKNLNPEWNEEFKFSVRDPKTQVLEFNVYGWEKIG 60
Query: 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDP-KDMKQRGKIVVELTYVPFKEDSI 400
HD++GM ++ LK L P E K FTL+L K + + + K RGK+ VEL Y PF E+ +
Sbjct: 61 KHDKMGMNVLALKELAPDERKAFTLELRKTLDGGEEGQPGKYRGKLEVELLYKPFTEEEM 120
Query: 401 KFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK 460
+ +V K + +G+ ++G G+L V+V AEDVEG++H NPY I +KG+++
Sbjct: 121 Q--AVQK--APEGT---------PVAG-GMLVVIVHSAEDVEGKHHTNPYVHIYFKGEER 166
Query: 461 RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS--KRTGVI 502
+TK ++K +DP WNEEF FML+EPP+HEK+H+EV S R G++
Sbjct: 167 KTKNVKKNKDPKWNEEFSFMLEEPPVHEKLHVEVFSTSSRIGLL 210
|
|
| FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 110/452 (24%), Positives = 203/452 (44%)
Query: 59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEF 118
+ E+P WV PD ER +WLN+ L +WP + V+ T +P +K+ F
Sbjct: 143 IDELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMHGFRF 202
Query: 119 ENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQ 176
+ + LGT+PP I G+++Y+ N N+++M+ L +A + +I L + I D Q
Sbjct: 203 DRIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDINFYLGGMKGGIK----DFQ 258
Query: 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGG-DIMSIPGLYQFIQKCITK 235
I R+ +KPL+ + P + + + P++DF + +G D M +PGL +++ I +
Sbjct: 259 IHGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL--VGVIDFMDMPGLSDLLRRIIVE 316
Query: 236 YVAGIYIWPQTYEIPILD-ASSVAIK--KPVGILHVKVVRASKLLKKDFL----GTSDPY 288
+ + + P I + + S+VA+K +P GIL + VV A L+KKD G SDPY
Sbjct: 317 QIGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPY 376
Query: 289 VKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGM 348
+++ + W E + Q +++Q+ D D + LG
Sbjct: 377 AIINVGAQEFKTQIIDNNVNPKWDYWCEATVFIEM---GQFVEIQLKDSDDSKKDENLGR 433
Query: 349 QLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKK 408
+ + + K+ +D + D K G + V L + D + +
Sbjct: 434 ASIDIASVI----KKGVVD--SWLTLEDAK----HGLLHVRLQWYKLTADPNDLQQILLE 483
Query: 409 YSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKT 468
++ SS A+ + S + + + +PY + K++T MI +
Sbjct: 484 -TQLLRVTSMSS---AVLSVFIDSA--RHLKQARSSSKPDPYLVCSVNKQKQQTAMIMRD 537
Query: 469 RDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTG 500
P W + F F++ P +E ++I++ ++TG
Sbjct: 538 DSPVWEQGFTFLVSNPD-NESLNIKIYDQKTG 568
|
|
| WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 89/328 (27%), Positives = 168/328 (51%)
Query: 59 LPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQP-IFDEYSGKFKIESIE 117
L ++P WV+ PD ERV+WLN+ + +WPY+ + + P + + G FK + +
Sbjct: 72 LQDLPAWVQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPGMFK--NFK 129
Query: 118 FENLTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDL 175
F + +G +P + GI+VY TN ++++++ + +AG+ + + F T + ++
Sbjct: 130 FTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTV--SCCGF--TGGMNNI 185
Query: 176 QIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITK 235
Q R LKPL+P P + + +E P +DF + +G +++ +PGL I+ I
Sbjct: 186 QFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMVELPGLIDAIRSVINS 244
Query: 236 YVAGIYIWPQTYEIPI---LDASSVAIKKPVGILHVKVVRASKLLKKD--FL--GTSDPY 288
+A + + P +P+ +D + + +P G++ +K++ A L +D F+ G SDPY
Sbjct: 245 QIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLENRDISFIKKGKSDPY 304
Query: 289 VKLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGM 348
++ + + WNE F+ VV + + Q L++++FD D+ G + LG
Sbjct: 305 AEIQVGSQFFKTRTIDDDLNPI---WNEYFEAVVDQADGQKLRIELFDEDQ-GKDEELGR 360
Query: 349 QLVPLKLLTPHET--KEFTLDLLKHTNI 374
V LKL+ T K + L+ KH ++
Sbjct: 361 LSVDLKLVQAKGTIDKWYPLEGCKHGDL 388
|
|
| MGI|MGI:1261845 Esyt2 "extended synaptotagmin-like protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 115/455 (25%), Positives = 211/455 (46%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWP++ + I R T +P + + F
Sbjct: 106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVR--GANAHLSTFSFTK 163
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G P + G++VY N + Q++++ + + GN I L +K R V+ +QI
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 221
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ IPGL I ++
Sbjct: 222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLT-NLLDIPGLNGLSDTIILDIIS 280
Query: 239 GIYIWPQTYEIPILDASSVA-IKKPV--GILHVKVVRASKLLKKD-FL-----GTSDPYV 289
+ P +P++ +A ++ P+ G+L + + A L KD +L G SDPY
Sbjct: 281 NYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 340
Query: 290 KLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ + + +WNE ++ +V E Q L++++FD D D LG
Sbjct: 341 IIRVGNQIFQSKVIKENLSP---KWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSL 396
Query: 350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
++ L + + FTLD + PK GK+ ++L ++ D+ +++ K
Sbjct: 397 MIDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLKLEWLTLMPDA---ANLDK 441
Query: 408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDV-EGENHN-NPYAII-LYKGDKKRTKM 464
+ + DQ+SD LS A LL + + A ++ G+ N NP ++ + G K +
Sbjct: 442 VLADIRADKDQASD--GLSSA-LLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESK 498
Query: 465 IR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498
IR KT +P W E F F + P + + +EV ++
Sbjct: 499 IRYKTSEPVWEENFTFFIHNPR-RQDLEVEVKDEQ 532
|
|
| UNIPROTKB|A0FGR8 ESYT2 "Extended synaptotagmin-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.7e-29, P = 6.7e-29
Identities = 114/455 (25%), Positives = 210/455 (46%)
Query: 61 EIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFEN 120
++P WV PD ER +WLN+ + MWP++ + I R T +P + + F
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVR--GANTHLSTFSFTK 239
Query: 121 LTLGTLPPTIYGIRVYETN--ENQLVMEPALRWAGNPNIVLVLKLLSFRITVQLVDLQIF 178
+ +G P I G++VY N + Q++++ + + GN I L +K R V+ +QI
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 297
Query: 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVA 238
R+ L+PL+ P + + + +P ++ L +++ +PGL I ++
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLT-NLLDVPGLNGLSDTIILDIIS 356
Query: 239 GIYIWPQTYEIPILDASSVA-IKKPV--GILHVKVVRASKLLKKD-FL-----GTSDPYV 289
+ P +P++ +A ++ PV G+L + + A L KD +L G SDPY
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416
Query: 290 KLSLTGEXXXXXXXXXXXXXXXXEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQ 349
+ + + +WNE ++ +V E Q L++++FD D D LG
Sbjct: 417 IIRVGNQIFQSRVIKENLSP---KWNEVYEALVYEHPGQELEIELFDEDP-DKDDFLGSL 472
Query: 350 LVPLKLLTPHETKE--FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSK 407
++ L + + FTLD + PK GK+ + L ++ ++ S++ K
Sbjct: 473 MIDLIEVEKERLLDEWFTLDEV-------PK-----GKLHLRLEWLTLMPNA---SNLDK 517
Query: 408 KYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDV-EGEN-HNNPYAII-LYKGDKKRTKM 464
+ + DQ++D LS A LL + + A ++ G+ +NP ++ + G K +
Sbjct: 518 VLTDIKADKDQAND--GLSSA-LLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESK 574
Query: 465 IR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498
IR KT +P W E F F + P + + +EV ++
Sbjct: 575 IRYKTNEPVWEENFTFFIHNPK-RQDLEVEVRDEQ 608
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7XA06 | SYT3_ARATH | No assigned EC number | 0.6401 | 0.9644 | 0.9055 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_VIII000119 | hypothetical protein (547 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 507 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-44 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-28 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 7e-27 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 9e-26 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 5e-23 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 7e-20 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-19 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 2e-18 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-17 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 4e-17 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 4e-17 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 1e-16 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 5e-16 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 8e-16 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 8e-16 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-15 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-15 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-14 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 4e-14 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 5e-14 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-13 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-13 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 2e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-13 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 3e-13 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 3e-13 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 7e-13 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 8e-13 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 9e-13 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 2e-12 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 5e-12 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-11 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 3e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 5e-11 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-10 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 2e-10 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 2e-10 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-10 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-10 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 3e-10 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 3e-10 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 3e-10 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 5e-10 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 6e-10 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 7e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-09 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-09 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 4e-09 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 8e-09 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-08 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 1e-08 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 3e-08 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 7e-08 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 9e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 4e-07 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 4e-07 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 5e-07 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 1e-06 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-06 | |
| cd08392 | 128 | cd08392, C2A_SLP-3, C2 domain first repeat present | 2e-06 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 3e-06 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 4e-06 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 5e-06 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 1e-05 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-05 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-05 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 2e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 3e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 3e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 4e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 6e-05 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 6e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 9e-05 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 9e-05 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-04 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 1e-04 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-04 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 2e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 3e-04 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 3e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 3e-04 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 4e-04 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 6e-04 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 6e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 7e-04 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 7e-04 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 9e-04 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 0.001 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.001 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 0.002 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 0.002 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.002 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 0.003 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 1e-44
Identities = 132/516 (25%), Positives = 212/516 (41%), Gaps = 90/516 (17%)
Query: 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFI-----YSKPNDDQVEEPLVTPLCELDTIPLF 56
S + G LGF F L +LV +++ + D V++ L E
Sbjct: 165 SVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLE------- 217
Query: 57 DLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESI 116
DYE V+WLN FL WP ++ +I V E F I+++
Sbjct: 218 ------------NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDAL 264
Query: 117 EFENLTLGTLPPTIYGIRVY-ETNENQLVME---------------PALRWAGNPNIVLV 160
+ TLG+ PP I GIR Y T + +VM+ + R + NP I LV
Sbjct: 265 ALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLV 324
Query: 161 LKL----LSFRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG 216
+K SF + + + DL R+ ++ L+ +P T+ L+E P DF + LG
Sbjct: 325 VKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLG 383
Query: 217 G-----DIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVV 271
G DI +IPGL +FIQ+ I + + + P + I I + +G++ VK+
Sbjct: 384 GDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIK 443
Query: 272 RASKLLKKDFL--GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQI 329
A L K D GT DPY+ ++ + + KT VKK LNP WNE F +++ +
Sbjct: 444 SAEGLKKSDSTINGTVDPYITVTFSDRVIG--KTRVKKNTLNPVWNETFYILL-NSFTDP 500
Query: 330 LQLQVFDWDKVGGHDRLGMQLVPLKLL-----TPHETKEFTLDLLKHTNISDPKDMKQRG 384
L L ++D++ +G + L LL +E EF + K G
Sbjct: 501 LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR------------NTKNVG 548
Query: 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE 444
++ +L + P ED K KGS S G+L V ++ + ++
Sbjct: 549 RLTYDLRFFPVIED---------KKELKGSVEPLED-----SNTGILKVTLREVKALDEL 594
Query: 445 NHNNPYAIILYKGDKKR---TKMIRKTRDPAWNEEF 477
+ + K T ++ T P+WN ++
Sbjct: 595 SSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQY 630
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Length = 1227 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-28
Identities = 40/83 (48%), Positives = 50/83 (60%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L KD G SDPYVK+SL G+K KKT V K LNP WNE F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 326 ESQILQLQVFDWDKVGGHDRLGM 348
E L+++V+D+D+ G D +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
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Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 7e-27
Identities = 46/104 (44%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L KD G SDPYVK+SL G++ KT V K LNP WNE F+ V +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQ--KFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDL 368
ES L ++V+D D+ D LG +PL LL + E L L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
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The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-26
Identities = 41/90 (45%), Positives = 53/90 (58%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
L VK++ A L KD G SDPYVK+SL G+ KKT V K LNP WNE F+ V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
PE L+++V+D D+ G D +G +PL
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLS 90
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Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 5e-23
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L D G SDP+VK L GEK+ KT KK LNP WNE+F++ V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+L+++V+DWD+ G D LG + L L P ET E TL L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
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5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-20
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
+G+L V+VVR + L +DF +SDPYV L+L +K+ KT V KKNLNP WNE L V
Sbjct: 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56
Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
P + + +L+VFD D D +G
Sbjct: 57 PNPMAPL-KLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-19
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLN 311
SV+ L +K+++A +L KDF GTSDP+VK+ L LP KK T VK+KNLN
Sbjct: 8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYL----LPDKKHKLETKVKRKNLN 63
Query: 312 PEWNENFK---LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
P WNE F ++ + ++L LQV D+D+ +D +G +PL + E + F DL
Sbjct: 64 PHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
LH ++RA L D G SDPYVKL+L K +T K NPE+NE
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 324 EPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
E + L+L V D D+ G+D LG +PLK L P++TK+F + L
Sbjct: 77 TEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 3e-17
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V+ A L KD GTSDP+V++ G+ L +T+V KK+ P WNE F+ + E
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTL---ETSVVKKSCYPRWNEVFEFELMEG 58
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTL 366
L ++V+DWD V +D LG + ++ L E F L
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-17
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKL 320
IL VKV+ L KKD G SDPYVK+SL ++ +T KK LNP+WNE F
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
V E ++L +VFD +++ D LG VPL
Sbjct: 61 RVNPREHRLL-FEVFDENRLTRDDFLGQVEVPL 92
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-17
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK----TTVKKKNLNPEWNENF--K 319
L V +++A+ L D GTSDPYVK+ L LP KK T V +K LNP +NE F K
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYL----LPDKKKKFETKVHRKTLNPVFNETFTFK 73
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL-LTPHETKE 363
+ E ++ L V+D+D+ HD +G VPL H T+E
Sbjct: 74 VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEE 118
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-16
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK+ LNP +NE+F
Sbjct: 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLG 347
V P QI L + V D+D++G +D +G
Sbjct: 75 V--PFEQIQKVHLIVTVLDYDRIGKNDPIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-16
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 264 GILHVKVVRASKLLKKD------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN 317
G+L + V+ A L+ KD G SDPYV + + + K+ V K+NLNP+WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57
Query: 318 FKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
++ VV E Q L++++FD D D LG + L
Sbjct: 58 YEAVVDEVPGQELEIELFDED-PDKDDFLGRLSIDLG 93
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 8e-16
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L + + L +D GTSDPYVK G K +K T+ KNLNP W+E F L +++
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK 385
+Q L ++VFD+D+ D +G V L L ++ E L L DP + G
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL------EDPNSDEDLGY 112
Query: 386 IVVELTYVP 394
I + +T P
Sbjct: 113 ISLVVTLTP 121
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 8e-16
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV 321
L V ++R L D G SDP+VKL L + K KT VKKK LNPE+NE F
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLG 347
+K + + L++ V+D D +D +G
Sbjct: 73 IKHSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-15
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
G L VKV+RAS L D G SDP+ L L +L +T K LNPEWN+ F +K
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
+ +L++ V+D DK + LG +PL + E K + LK + +
Sbjct: 58 DIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYA---LKDKKLRTRA----K 109
Query: 384 GKIVVELTYV 393
G I++E+ +
Sbjct: 110 GSILLEMDVI 119
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-15
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 264 GILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G+L V VV A L KD G SDPY LS+ ++ KT LNP+WN +
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
+ ++Q+L+L ++D D+ G D LG + L+ + + + + K
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117
Query: 382 QRGKIVVELT 391
G+I ++ +
Sbjct: 118 VSGEIHLQFS 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V V++A L D G SDPYVK+SL G+KL KKT+VKK LNP +NE +F +
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
++ E L + V D D VG ++ +G
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 4e-14
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
V VVRA L KD G SDPY+K+ L +K+ + + LNP + + F+L P +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGN 62
Query: 328 QILQLQVFDWDKVGGHDRLG 347
IL++ V D+D +G D +G
Sbjct: 63 SILKISVMDYDLLGSDDLIG 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+ V +++A L D GTSDPYVK+ L +++ KKT +KK+ LNP +NE+F
Sbjct: 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFT 365
+ P ++ L + V D D++ +D +G + K E K +
Sbjct: 75 I--PLERLRETTLIITVMDKDRLSRNDLIGKIYLGWK-SGGLELKHWK 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-13
Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
+ G L + + L D G SDP+VKL L + + KT V KK LNP WNE F +
Sbjct: 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVWNEEFTI 1094
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V +L + V DWD +D LG + L L P T + L T I
Sbjct: 1095 EVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVL 1150
|
Length = 1227 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-13
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
L V+V+RA+ + K D L T D YV+L L + EK K+T K ++NP WNE F+ +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEK---KRTKTIKNSINPVWNETFEFRI 58
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+ +L+L V D D V D LG L + L E T L
Sbjct: 59 QSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSL 103
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKL-----------------------SLTGE 296
+ P+ +L V V+ A LL KD G SDPY L ++ +
Sbjct: 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83
Query: 297 KLP---WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
+P K T VK + LNP WNE F+ V++ + L L ++D D D LG +PL
Sbjct: 84 TVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHDD----DFLGCVNIPL 139
Query: 354 KLLTP 358
K L
Sbjct: 140 KDLPS 144
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-13
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
++ + +V L D G SDPYVK L EK K+ V K LNP+W E F L + +
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFD 57
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+SQIL+++V+D D + +G + L L +T L+L
Sbjct: 58 DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-13
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V+V A L+ D G SDPYVKL L + +KT KK LNP WNE F +K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 324 -EPESQILQLQVFDWDKVGGHDRLG 347
+ + L ++V+DWD+ +D +G
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMG 99
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-13
Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S+ K +GIL+VK+++A L +DF GT+DPY K+ L ++ K++ + KK LNPE++
Sbjct: 8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67
Query: 316 ENFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFT 365
E+F V E + L++ ++D+D+ + +G+ +PL + E +
Sbjct: 68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 7e-13
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 271 VRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNENFKLVV----- 322
KL KKDF G SDP++++S E W +T V K LNP W F + +
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL 366
+ + I +++V+D+D G HD +G L L EF L
Sbjct: 66 GDYDRPI-KIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-13
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPES 327
+++VRA L G SDPYV L T K KT LNP W+E F+L V E
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 328 QILQLQVFDWDKVGGHDRLG---MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
+ V+D VG HD G ++L P + +E LDL D + G
Sbjct: 65 LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-------DTQ-----G 112
Query: 385 KIVVELT 391
++++ ++
Sbjct: 113 RLLLRVS 119
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 9e-13
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNEN--FK 319
G L + +++A L D G SDPYVK+SL G +L KKT+VKK LNP +NE F
Sbjct: 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGM 348
+ + ++ L + V D+D+VG ++ +G+
Sbjct: 74 VPPENVDNVSLIIAVVDYDRVGHNELIGV 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-12
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + V+ A L K+D DP+ +++ G + T V KK L+P+WNE+F L V
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQT--HSTDVAKKTLDPKWNEHFDLTVG-- 57
Query: 326 ESQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
S I+ +QVFD K D+ LG + + P + + L+ SD ++ R
Sbjct: 58 PSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSD--NLSVR 115
Query: 384 GKIVVEL 390
GKIVV L
Sbjct: 116 GKIVVSL 122
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-12
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKL 320
G L V + L D S+PYVK+ L +K +KT+VKK NP +NE K
Sbjct: 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKEFTL 366
+ + + ++ LQL V+ D+ G + LG +PL L +++ + L
Sbjct: 74 HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENF------ 318
L V+V+ L K GT DP+ +++L K K+T VKKK NP ++E F
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 319 ---------KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
K+ ++ E L+++++ V G D LG +PL+ L
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-11
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
L V +++A L + + DP+VK+ L ++ ++ VK+K NP ++E F V
Sbjct: 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75
Query: 325 PESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
E Q L+L V+D D+ H +G L PLK L + DL
Sbjct: 76 KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENF--KLV 321
L V V++A L K D G +DPYVK++L +++ KKT VKK LNP +NE+F +
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
+E E ++ V D D+V ++ +G
Sbjct: 77 SEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-10
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 265 ILHVKVVRASKL--LKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKN-LNPEWNENF 318
L +K++ +L K D DPYV++ + G KT V K N NP WNE F
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
+ V PE L+ V+D D G D LG +PL L
Sbjct: 63 EFDVTVPELAFLRFVVYDEDS-GDDDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 264 GILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
G+L V + RA+ L K DF G+SDPYV S P T + +K+LNP W E + ++V
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60
Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362
E + L +++D D+ DRLG + LK L
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNW 103
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ES 327
VV L G D K++ G K KKT V + LNP WNE F+ +
Sbjct: 2 VVSLKNLPGL--KGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPD 56
Query: 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV 387
+ L++ V D++KVG + +G V L+ L E T LL D I
Sbjct: 57 ESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL------DSNGRPTGATIS 110
Query: 388 VELTYVP 394
+E++Y P
Sbjct: 111 LEVSYQP 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V V + L D DPYV+L L K +KT+VKK NLNP ++E F+ V
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 324 EPESQILQLQVFDWDKVGGHDR----LGMQLVPLK--LLTPHETKEFTL 366
E + L V + R LG L+ L L+ T+ + L
Sbjct: 78 LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-10
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 431 LSVLVQGAEDVEGENHN---NPYAIILY---KGDKKRTKMIRKTRDPAWNEEFQFMLDEP 484
L V V A+++ ++ N +PY + K D K+TK+++ T +P WNE F F + P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 485 PLHEKIHIEVMSKRT 499
L E + IEV
Sbjct: 61 ELAE-LRIEVYDYDR 74
|
Length = 85 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
P + V V A L K+D G +DPYV + GE + ++ V+K L+PE++
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57
Query: 322 VKEPESQILQLQVFDWDK 339
K+P S I +QV W+
Sbjct: 58 RKKPRSPIK-IQV--WNS 72
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L + V A KL DPYV++++ G+ P KKT V KK NP+WNE+F ++V P
Sbjct: 4 LQITVESA-KLKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVT-P 59
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
+S L+ +V+ + LG + L + + E + TL+L
Sbjct: 60 QST-LEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLS 107
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 265 ILHVKVVRA-------SKLLKKDFLGTS-------DPYVKLSLTGEKLPWKKTTVKKKNL 310
K+ RA S ++ DPYV++S G+K+ KT+VKK +
Sbjct: 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSY 57
Query: 311 NPEWNENFKLVVKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPL 353
NPEWNE P + +++Q+ DWD+VG D +G + L
Sbjct: 58 NPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDL 101
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-10
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V+++ A LL D G+SDP+VK+ L +P KT VKKK L P ++E+F+
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 322 V----KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
V E +L V D+D +G +D G +PL +
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-10
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V+VV A L+ KD G+S YV+L G+K K+T K K+LNP WNE V +P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 326 E---SQILQLQVFD 336
+ +L++ V++
Sbjct: 59 SRLSNLVLEVYVYN 72
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-10
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 20/132 (15%)
Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKL---V 321
V V++A LL K GT+D YV + L EK T+VK+K +P W E +F+L +
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE----FTLDLLKHTNISDP 377
LQL V + +G LG +PL L + + F L+ S P
Sbjct: 59 SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLE-------SKP 111
Query: 378 -KDMKQRGKIVV 388
KD K+RG+I V
Sbjct: 112 GKDDKERGEIEV 123
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-10
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVV 322
G L V ++ A L DFLG DPYV + ++ +K+ V K NPEWNE FK V
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTV 57
Query: 323 KEPESQI---LQLQVFDWDKVGGHDRLGMQLVPLK 354
+ P L L++ D D D +G + LK
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLK 92
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-09
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE 324
+L V + A L PYV+L++ +K+ VK++ NP W E F +V+
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRN 57
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLK--LLTPHETKE--FTLD 367
PE+Q L+++V D LG +PL L P T + F LD
Sbjct: 58 PENQELEIEVKDDKTGK---SLGSLTLPLSELLKEPDLTLDQPFPLD 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 263 VGILHVKVVRASKLLKKDFLGTS-DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV 321
+G+L V + A L D +G + DPYV S++ + +T VKK NP WNE ++
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRREL-ARTKVKKDTSNPVWNETKYIL 59
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPL-KLLTPHETKEFTLDLLKHTNISDPKDM 380
V ++ L L V+D++ +G L LL E + T +LL++
Sbjct: 60 VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG-------- 110
Query: 381 KQRGKIVVELTYVP 394
K G++ +L + P
Sbjct: 111 KPVGELNYDLRFFP 124
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-09
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
G+L + + +A+ L + +G DPYV++ + G +T LNP W+E + V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVK--GRTVTISNTLNPVWDEVLYVPVT 58
Query: 324 EPESQILQLQVFDWDKVGGHDR-LG 347
P +Q + L+V D++KV G DR LG
Sbjct: 59 SP-NQKITLEVMDYEKV-GKDRSLG 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 8e-09
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 430 LLSVLVQGAEDVEGENHN---NPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDE 483
L+V + A ++ ++ +PY + GD KK+TK+++ T +P WNE F+F +
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 484 PPLHEKIHIEVMSKRTG----VIGAC 505
P L E + IEV K IG
Sbjct: 61 PELAE-LEIEVYDKDRFGRDDFIGQV 85
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 431 LSVLVQGAEDVEGENHN---NPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPL 486
L V V A ++ ++ N +PY + G +K +TK+++ T +P WNE F+F + +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE- 59
Query: 487 HEKIHIEVMSKRTG----VIGAC 505
+ + +EV K +G
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEV 82
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-08
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL-TGEKL-PWKKTTVKKKNLNPEWNENFKLV 321
G L+V ++RA +LL+ D SDP+VK+ L G KL KKT+ + ++P +NE+F
Sbjct: 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73
Query: 322 VKEPESQILQLQVFDWD 338
V + E + + L +
Sbjct: 74 VPQEELENVSLVFTVYG 90
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 41/97 (42%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK------KTTVKKKNLNPE 313
K G LHV V A L GTSD +VK L LP K KT V KK++NP
Sbjct: 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL----LPDKSKKSKQKTPVVKKSVNPV 78
Query: 314 WNENF--KLVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
WN F V E SQ L+L V+D DK+ +D LG
Sbjct: 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-08
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV 322
LHV V++ L D SDPYVK L +K +KT+VKKK LNP +NE + V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
+ E +++L L V+ D +G + LG V L
Sbjct: 77 EREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-08
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + VV A L+ KD GTSDPYV + + K K+T +NLNP WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 326 ESQILQLQVFDWD 338
+I +++V+D D
Sbjct: 60 SDRI-KVRVWDED 71
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
+G L V +V L + G SDPY ++S+ ++ KT V LNP+WN + + V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFV 70
Query: 323 KEPESQILQLQVFDWDKVGGHDRLG 347
K+ E +L + VFD D D LG
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLG 95
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-07
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK------KKNLNPEWNEN 317
L V V++A L +D +PYVK+ L LP + K KK LNPEWN+
Sbjct: 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYL----LPDRSEKSKRRTKTVKKTLNPEWNQT 71
Query: 318 FKL-VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
F+ V+ + L++ V+D+D+ G +D LG ++ L
Sbjct: 72 FEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 267 HVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE 326
V+V+ A +L+ G DP VK+ + G+K K T+VKK P +NE F E
Sbjct: 7 RVRVIEARQLVG----GNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESP 59
Query: 327 S----QILQLQVFDWDKVGGHDRLG 347
+I+++ V+D + +G
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-07
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 264 GILHVKVVRASKLLK-KDFLGTS---DPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
G++ +++ + L K+ T DP+V +S G ++ +T+ ++ LNP +NE
Sbjct: 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-GRRV--FRTSWRRHTLNPVFNERLA 57
Query: 320 LVVKEPESQI-LQLQVFDWDKVGGHDRLG 347
V E +Q +V D DK +D +
Sbjct: 58 FEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVVKE 324
L VK ++A + G+S+PY L + ++ P K +++ +K NP W+E+F +
Sbjct: 1 LLVKNIKA--NGLSEAAGSSNPYCVLEM--DEPPQKYQSSTQKNTSNPFWDEHFLFELS- 55
Query: 325 PESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRG 384
P S+ L +V+D K LG+ +VP L + + L D G
Sbjct: 56 PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSV----SG 111
Query: 385 KIVVELTYVP 394
I VE ++
Sbjct: 112 SITVEFLFME 121
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 431 LSVLVQGAEDV---EGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLH 487
L V V A+D+ +G+ ++ Y + + G KKRT+ K +P WNE+ F + +P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 488 EKIHIEV 494
+ +EV
Sbjct: 62 SNLVLEV 68
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-06
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 287 PYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344
PYVK+ L +K +KT VKK +NP +NE K VV+ QLQV W
Sbjct: 39 PYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKR 98
Query: 345 R--LGMQLVPL 353
R LG L+PL
Sbjct: 99 RVFLGEVLIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENF 318
L V+V+ S L K+ GT DPY ++L +K K+T VKKK NP+++E F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAF 54
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 285 SDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV 340
S+PYVK L +K +KT++K+ NP +NE K + E++ LQL V+ +D+
Sbjct: 37 SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRF 96
Query: 341 GGHDRLGMQLVPL---KLLTPHE 360
G + LG +PL + HE
Sbjct: 97 GRNTFLGEVEIPLDSWNFDSQHE 119
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V VV+A L+ + T+DP+VK+ L G K+ KKT+VK+ + NP +NE V
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 324 EPESQILQLQV 334
Q L L+V
Sbjct: 77 AIVLQDLSLRV 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 302 KTTVKKKNLNPEWN-ENFKLVVKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLL 356
KT V KK+LNP WN E F+ V + E Q LQ++V D D +D +G + L L
Sbjct: 35 KTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 429 GLLSVLVQGAEDVEGEN-------HNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFML 481
GLL V V V G N ++PY ++ K +T++I+K +P WNEE +
Sbjct: 2 GLLKVRV-----VRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV 56
Query: 482 DEPPLHEKIHIEVMSKRT 499
P + +EV K T
Sbjct: 57 PNPMA--PLKLEVFDKDT 72
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 448 NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
+P+ + Y G T +++K+ P WNE F+F L E + +EV
Sbjct: 22 DPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD-SPLSVEV 67
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
P ++++ ++ + L V V+RA+ L D+ ++D YVK+ G++ K+T V N
Sbjct: 14 PNVNSNCCPTRRGLATLTVTVLRATGL-WGDYFTSTDGYVKVFFGGQE---KRTEVIWNN 69
Query: 310 LNPEWNENFKL-VVKEPESQILQLQVFDWDKVGGHDRLG 347
NP WN F V+ L+ +V+D D D LG
Sbjct: 70 NNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLG 108
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 448 NPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
+P+A + K D KRTK+ +KT +P ++E F F L +EK +V
Sbjct: 20 DPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKV 70
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 432 SVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
V V AE + ++ +PY II +G+ R+ + + T P ++ + F +P
Sbjct: 6 QVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RS 63
Query: 489 KIHIEVMSKRT 499
I I+V +
Sbjct: 64 PIKIQVWNSNL 74
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKT-TVKKKNLNPEWNENFKLVV 322
G L V V++A L K L DPY L + G KKT T + +PEW+E + +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEI 57
Query: 323 KEPESQILQLQVFDWDK 339
E + IL++ VFD DK
Sbjct: 58 TEDKKPILKVAVFDDDK 74
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-05
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 430 LLSVLVQGAED---VEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL 486
LL V + A++ + +PY + +++K+ +T +P W E F F L P
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF-LVRNPE 59
Query: 487 HEKIHIEVMSKRTG 500
++++ IEV +TG
Sbjct: 60 NQELEIEVKDDKTG 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V V+RA L + D T YVK+SL + + KKT V +P +NE +FK+
Sbjct: 17 LTVVVLRARGLRQLDHAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLG 347
++ ++ L L V V LG
Sbjct: 76 SRQLDTASLSLSVMQSGGVRKSKLLG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 429 GLLSVLVQGAEDVEGENHNN---PYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEP 484
G L VL+ A+ ++ + PY II + ++++K+ + R+P WNE+F+F ++ P
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60
Query: 485 PLHEKIHI--EVMSKRTG 500
+ +M K
Sbjct: 61 GWGGDTKLILRIMDKDNF 78
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 431 LSVLVQGAEDVEGENHN---NPYAII-LYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPP 485
L + + AED++ N YA++ + K+ T + R +P WNE +F LDE
Sbjct: 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 486 LHE---KIHIEVMSKRTG----VIGAC 505
L + + IEV +R +IG
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEV 88
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342
G PY +L L G+ + T VKKK NP WN + + +V + + + V D D+
Sbjct: 11 GLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD-DRDRH 67
Query: 343 HDRLGMQLVPL 353
LG + L
Sbjct: 68 DPVLGSVSISL 78
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 271 VRASKLLKKDFLGTSDPYVKLSL-TGEKLPWKK---TTVKKKNLNPEWNENFKLVVKEPE 326
+ LL KD L SDP+V + + TG W + T V K NLNP++ F + E
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66
Query: 327 SQILQLQVFDWD----KVGGHDRLG 347
Q L+ +V+D D + HD LG
Sbjct: 67 VQKLRFEVYDVDSKSKDLSDHDFLG 91
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV--------MSKRTGVIG 503
K +++T + + +P ++E F+F + L + ++V +S+ ++G
Sbjct: 51 KSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRR-TLDVAVKNSKSFLSREKKLLG 105
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L++++V L KD G+SDPY + + E +T K LNP W E + + + P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNE--VIIRTATVWKTLNPFWGEEYTVHLP-P 58
Query: 326 ESQILQLQVFDWDKVGGHDRLG 347
+ V D D + D +G
Sbjct: 59 GFHTVSFYVLDEDTLSRDDVIG 80
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L V V+ A L+ D + +VK L + L + + +N NP WNE V EP
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVL--RTRPSQTRNGNPSWNEELMFVAAEP 59
Query: 326 ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
L L V D + LG ++PL +
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 286 DPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENF---KLVVKEPESQILQLQVFDWDKV 340
DPYVK L + K +KT V +K NP +NE L V++ + ++LQ+ V+ D +
Sbjct: 34 DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93
Query: 341 GGHDRLGMQLVPLK--LLTPHETKEFTL 366
++ LG +PLK L+ K + L
Sbjct: 94 VENEFLGGVCIPLKKLDLSQETEKWYPL 121
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENF 318
L V ++ L D GTSDPYVKL L EK KT V +K NP ++E F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETF 71
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 449 PYAII-LYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
PY I LY D +TK I+KT +P WNEEF F ++ P ++ EV
Sbjct: 23 PYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN--PREHRLLFEV 73
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 431 LSVLVQGAEDVEGENHNN---PYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPP- 485
L+V V AE++ + N P+ G+K +TK I+KT +P WNE F+ + P
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV--PSR 58
Query: 486 LHEKIHIEVM 495
+ + +EV
Sbjct: 59 VRAVLKVEVY 68
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEV 494
K++TK I+KT +P WNE F F L ++ IEV
Sbjct: 48 NETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEV 86
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
+S P+G + V V +A+ L + G SDPY + + +T LNP
Sbjct: 701 SSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVK--YRTIYGSSTLNPI 758
Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVG 341
WNE + V +Q L L+ D+++ G
Sbjct: 759 WNEILYVPVTSK-NQRLTLECMDYEESG 785
|
Length = 1227 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 441 VEGENHNN--PYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVM 495
GE PY + + G K +T + + + +P WNE+ F PPL E+I I++
Sbjct: 27 FLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIR 83
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 9e-04
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 456 KGDKKRTKMIRKTRDPAWNEEFQF 479
K K RTK + KTR+P +NE +
Sbjct: 50 KATKLRTKTVHKTRNPEFNETLTY 73
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYA-IILYKGD----KKRTKMIRKTRDPAWNEEFQF 479
A L+V+V A + +G+ ++PY + L +G KK+T + + T +P +NE F F
Sbjct: 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSF 72
Query: 480 MLDEPPLHE-KIHIEVMSKRTG----VIGAC 505
+ L E + I V+ K + VIG
Sbjct: 73 DVPAEQLEEVSLVITVVDKDSVGRNEVIGQV 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 432 SVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL---HE 488
V V A + G N +P + G KK T + + T P +NE F F E P +
Sbjct: 7 RVRVIEARQLVGGN-IDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDK 65
Query: 489 KIHIEVMSKRT 499
I I V R+
Sbjct: 66 IIKISVYDSRS 76
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 459 KKRTKMIRKTRDPAWNEEFQFMLD 482
KKRTK I+ + +P WNE F+F +
Sbjct: 36 KKRTKTIKNSINPVWNETFEFRIQ 59
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKGDKK--RTKMIRKTRDPAWNEEFQFMLD 482
G+L+V ++ A ++G +PY ++ RTK+ + T +P WNE +++
Sbjct: 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61
Query: 483 EPPLHEKIHIEVMSKR 498
L E +++ V
Sbjct: 62 S--LTEPLNLTVYDFN 75
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV--K 323
L ++++ A L K GT DPY +SL ++ +T +K LNP W E F
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQR 383
+ L D +G V L L + K+ L D + +
Sbjct: 56 DVTFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTPVDP-----DSEVQ 108
Query: 384 GKIVVELTY 392
G + + Y
Sbjct: 109 GSVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
L+V+VV+A L ++DP V++ L K K + NPEWN+ F
Sbjct: 2 LYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIE---RTSNPEWNQVFAFSKDRL 54
Query: 326 ESQILQLQVFDWDKVGGHD 344
+ L++ V WDK D
Sbjct: 55 QGSTLEVSV--WDKDKAKD 71
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.87 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.85 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.84 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.84 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.83 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.83 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.83 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.82 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.82 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.82 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.81 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.8 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.8 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.8 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.8 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.8 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.8 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.8 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.78 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.78 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.78 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.78 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.77 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.77 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.77 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.76 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.76 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.76 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.76 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.75 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.75 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.75 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.75 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.75 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.75 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.74 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.74 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.74 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.74 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.73 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.73 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.73 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.73 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.73 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.72 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.72 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.71 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.71 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.7 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.7 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.7 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.69 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.69 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.69 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.69 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.69 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.68 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.68 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.68 | |
| PLN03008 | 868 | Phospholipase D delta | 99.68 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.67 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.67 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.67 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.67 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.66 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.66 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.66 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.66 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.65 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.64 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.64 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.64 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.64 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.64 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.64 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.64 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.64 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.63 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.63 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.63 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.63 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.63 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.63 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.63 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.63 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.63 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.63 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.62 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.62 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.62 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.62 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.6 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.6 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.6 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.59 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.59 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.58 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.58 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.58 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.58 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.58 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.58 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.57 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.57 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.57 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.57 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.57 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.56 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.56 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.55 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.55 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.55 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.55 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.55 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.54 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.54 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.54 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.53 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.52 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.52 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.52 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.51 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.51 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.51 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.5 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.5 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.5 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.5 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.5 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.49 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.49 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.48 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.48 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.47 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.47 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.46 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.45 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.45 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.45 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.45 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.44 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.44 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.44 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.44 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.43 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.43 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.42 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.41 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.41 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.4 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.4 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.4 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.39 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.39 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.38 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.38 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.38 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.38 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.37 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.37 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.37 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.37 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.36 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.35 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.35 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.34 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.32 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.31 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.3 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.3 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.3 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.29 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.27 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.26 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.25 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.25 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.25 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.24 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.23 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.23 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.2 | |
| PLN02270 | 808 | phospholipase D alpha | 99.18 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.14 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.14 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.12 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.12 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.11 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.08 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.07 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.06 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.03 | |
| PLN03008 | 868 | Phospholipase D delta | 98.97 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.94 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.92 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.9 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.88 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.88 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.87 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.87 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 98.83 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.81 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.8 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.71 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.71 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.71 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.68 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.65 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.58 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.53 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.41 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.36 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.35 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.34 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.33 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.32 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.2 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.19 | |
| PLN02270 | 808 | phospholipase D alpha | 98.14 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.08 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.04 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 97.99 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.99 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 97.89 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 97.74 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.71 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.62 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.61 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.56 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.44 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.97 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.82 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.73 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.55 | |
| PLN02352 | 758 | phospholipase D epsilon | 96.49 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.32 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 96.02 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.66 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.6 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.59 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.46 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 95.25 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.24 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.96 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.56 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 94.41 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.25 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 93.9 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.48 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.43 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 93.1 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 92.9 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 92.89 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 92.2 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 91.82 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 91.78 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 91.4 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 90.3 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 87.77 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 87.68 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 84.62 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 84.2 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 83.05 | |
| cd08697 | 185 | C2_Dock-D C2 domains found in Dedicator Of CytoKin | 80.98 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=522.08 Aligned_cols=457 Identities=27% Similarity=0.509 Sum_probs=375.8
Q ss_pred cccchhhhhhcccccchhHHHHHHHhhheeec----cCCcccccccccccccCCchhHhhhCCCCCCceeCCCCcchHHH
Q 010550 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSK----PNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWL 77 (507)
Q Consensus 2 ~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~Wl 77 (507)
|++||++|++||+++-+++.++ .+.++|+ +.+|..|+...+.+.+ +.+ -.|+|++|||
T Consensus 165 ~v~Swifg~~~fs~~slffii~---~~~~vY~~~~~rv~rnird~v~~~~~~------ek~---------~nd~ESveWL 226 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIIL---VTMYVYRTCIKRVRRNIRDLVQQELSE------EKL---------ENDYESVEWL 226 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh---------hcchhHHHHH
Confidence 6799999999999555544333 3444454 2233233333333322 222 2699999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC---
Q 010550 78 NRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG--- 153 (507)
Q Consensus 78 N~~l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~l~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~--- 153 (507)
|.+|+++||.+++.+++.|.+++|+.|.++.|+| |+.+.+.+||||++||||.+||.|+. ..+.+.||+++++..
T Consensus 227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~ 305 (1227)
T COG5038 227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDI 305 (1227)
T ss_pred HHHHHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccch
Confidence 9999999999999999999999999999999998 99999999999999999999999986 556899999999963
Q ss_pred ------------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEecCCCCCCceeEEEEEcCCCceEEEEEEEcC-
Q 010550 154 ------------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG- 216 (507)
Q Consensus 154 ------------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g- 216 (507)
|++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|++..+.++|++.|.+||.++|+|
T Consensus 306 sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~ 384 (1227)
T COG5038 306 SDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGG 384 (1227)
T ss_pred hhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCC
Confidence 4568888865 44 899999999999999999999 99999999999999999999999999986
Q ss_pred ----cccccCcchHHHHHHHHHHHhhhcccCCccceecccccccccccCceEEEEEEEEEeccccccC--cCCCCCcEEE
Q 010550 217 ----GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVK 290 (507)
Q Consensus 217 ----~~i~~ip~l~~~~~~~i~~~l~~~~v~P~~~~~~l~~~~~~~~~~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~ 290 (507)
.||++||||.+|++++|...+++|+++|+.+++++.+...++...+.|+|.|+|.+|++|...+ ..+..|||++
T Consensus 385 ~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit 464 (1227)
T COG5038 385 DFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT 464 (1227)
T ss_pred CccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence 5799999999999999999999999999999999988776558889999999999999999988 6789999999
Q ss_pred EEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE-EEecc
Q 010550 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF-TLDLL 369 (507)
Q Consensus 291 v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~l~ 369 (507)
+...+... .+|++++++.||+|||+|++.+.. .++.|.++|||.+...+|+.+|++.++|..|.....+.. ...+.
T Consensus 465 ~~~~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~ 541 (1227)
T COG5038 465 VTFSDRVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL 541 (1227)
T ss_pred EEeccccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee
Confidence 99765433 489999999999999999999875 467899999999999999999999999999987654332 33332
Q ss_pred ccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCCC--CC
Q 010550 370 KHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGEN--HN 447 (507)
Q Consensus 370 ~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~--~~ 447 (507)
. +.+..|+|+.+++|+|..++........ + ......+|++.++++++++|.... ..
T Consensus 542 ~--------~~k~vGrL~yDl~ffp~~e~k~~~~~s~---------e-----~~ed~n~GI~k~tl~~~~~l~~~~~~~~ 599 (1227)
T COG5038 542 R--------NTKNVGRLTYDLRFFPVIEDKKELKGSV---------E-----PLEDSNTGILKVTLREVKALDELSSKKD 599 (1227)
T ss_pred c--------cCccceEEEEeeeeecccCCcccccccc---------C-----CcccCCcceeEEEeeccccccCcccccc
Confidence 2 4678899999999999887743332210 0 112234699999999999997632 23
Q ss_pred CcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-CCCeeee
Q 010550 448 NPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-RTGVIGA 504 (507)
Q Consensus 448 dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-~~~~iG~ 504 (507)
.-+++++.+.++. .|+.++.+.+|.||+.++-.+.+. .+..+.+.+.|. ..+.||+
T Consensus 600 ~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~g~~i~~ 657 (1227)
T COG5038 600 NKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQSGKVIAT 657 (1227)
T ss_pred ceeEEEEecceEEeccceeeeccCCceeeecceEeccC-cceeEEEEecccccCceecc
Confidence 3348899988765 668999999999999999999886 567899999988 5555554
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=263.11 Aligned_cols=213 Identities=33% Similarity=0.519 Sum_probs=182.3
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~ 335 (507)
..+.....|+|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++|+||.|||+|.|.+.. ...+.|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 3556678999999999999999977789999999999988777899999999999999999999652 35789999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 415 (507)
|+|+++++++||++.++|..+.......+|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887778888886543221 222389999999998
Q ss_pred CCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCC
Q 010550 416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH 487 (507)
Q Consensus 416 ~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~ 487 (507)
.+|.|+|.|.+|+||.. .+.+||||++++.. +++||++++++.||+|||+|.|.|+...+.
T Consensus 296 -----------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 296 -----------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred -----------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 35789999999999985 35799999999843 346999999999999999999999876555
Q ss_pred c-eEEEEEEEC----CCCeeeeEe
Q 010550 488 E-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 488 ~-~L~v~V~d~----~~~~iG~~~ 506 (507)
+ .|.|+|||+ .+++||+|.
T Consensus 365 ~~~l~l~V~d~d~~~~~~~iG~~~ 388 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLGSNDLIGRCI 388 (421)
T ss_pred eeEEEEEEEEcccccccceeeEEE
Confidence 5 899999998 677999874
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=164.32 Aligned_cols=119 Identities=21% Similarity=0.332 Sum_probs=101.3
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
.|.|+|+|++|++++..+ .|++||||++.+++++ .+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~---~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAV---YETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEE---EEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 389999999999998777 7999999999998765 48988865 89999999999999753 468999999999999
Q ss_pred CCCeeEEEEEECc-ccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 342 ~d~~lG~~~i~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+|++||++.+++. .+..++....|++|... ......|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777777888888532 123567999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-21 Score=194.18 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=163.7
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
..|.|+|.+|+||++.+..|.+||||.+.++.+.+ .||.++.+++.|.|.|+|+|.+.. .-+.|.|-|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997765 689999999999999999999964 4578999999999 9999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcc
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE 423 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (507)
+.||.+.|.-.+|....+...|+.|.. .++ +....|+|++++.+.+....
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~------------------------- 130 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS------------------------- 130 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-------------------------
Confidence 999999999999987777777877753 333 36789999999998874322
Q ss_pred cCCCceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeE----EEeeeecCCCCCcccceEEEEecCCC-----------C
Q 010550 424 ALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDK----KRTKMIRKTRDPAWNEEFQFMLDEPP-----------L 486 (507)
Q Consensus 424 ~~~~~g~L~V~v~~a~~L~~--~~~~dPyv~v~~~~~~----~kT~v~~~t~nP~wnE~f~f~v~~~~-----------~ 486 (507)
.+..++.| +++++.. ++..|||+++...+.. ++|+++++|.||.|+|.|.|.+.... .
T Consensus 131 ~~~~c~~L-----~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 SGLVCHVL-----KTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred Ccchhhhh-----hhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence 11122223 3334432 3569999999997644 49999999999999999999987541 1
Q ss_pred C---ceEEEEEEEC-----CCCeeeeEe
Q 010550 487 H---EKIHIEVMSK-----RTGVIGACG 506 (507)
Q Consensus 487 ~---~~L~v~V~d~-----~~~~iG~~~ 506 (507)
+ -.|.+++|++ +++|+|+++
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevr 233 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVR 233 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEE
Confidence 1 2688888996 688999875
|
|
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=157.72 Aligned_cols=121 Identities=33% Similarity=0.503 Sum_probs=106.1
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+..|..|.+||||++++++.. .++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999998633 36899999999999999999998764 578999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+||++.+++.++..+...+.|++|... ++.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999988888999988532 12457899999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=159.99 Aligned_cols=119 Identities=33% Similarity=0.443 Sum_probs=100.9
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec-----CCCCeEEEEEEEcCCC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV 340 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~V~d~~~~ 340 (507)
++|+|++|+||+.++..|.+||||++++++.+ ++|++++++.||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 589999999999999999999976 3567899999999999
Q ss_pred CCCCeeEEEEEECcccC--CCCceEEEEeccccccCCCCCCCccceEEEEEEE
Q 010550 341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~ 391 (507)
++|++||++.++++++. .+.....|++|.... ....+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence 89999999999999987 555667888875321 123457899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=154.37 Aligned_cols=115 Identities=34% Similarity=0.513 Sum_probs=103.3
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
+|+|+|++|++|+..+..+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999997644 58999999999999999999998766789999999999988999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
+||++.+++.++..+.....|++|. ...|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999888889999873 2369999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=156.91 Aligned_cols=117 Identities=32% Similarity=0.444 Sum_probs=100.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 6899999999999999988999999999998744 4788764 5799999999999998766788999999998866
Q ss_pred CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
|++||++.+++.++..+.....|+++.. .++.+|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999876666677777643 24678999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=157.98 Aligned_cols=122 Identities=30% Similarity=0.432 Sum_probs=103.9
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
......|.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3456789999999999999999989999999999998654 5899999999999999999999877778999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCC-----CceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+..++|++||++.+++.++... .....++.+ ..+..|+|++++++
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999999862 222233332 25678999999986
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=153.02 Aligned_cols=108 Identities=27% Similarity=0.380 Sum_probs=92.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcC----ccCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEEEEEc
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVFDW 337 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~V~d~ 337 (507)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+.+ +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 49999999999842 33344689999999999999999999974 3346799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccc
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~ 373 (507)
+..++|++||++.++++++..++....|++|.+.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 988889999999999999999988889999866544
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=154.52 Aligned_cols=116 Identities=27% Similarity=0.391 Sum_probs=99.0
Q ss_pred EEEEEEEEecc---ccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 265 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
.|+|+|++|++ |+.+|..|.+||||++++++++ .+|++++++.||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~---~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKW---VRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEE---eEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 48999999999 8889999999999999998765 48999999999999999999997754 58999999999873
Q ss_pred ------CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEE
Q 010550 342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (507)
Q Consensus 342 ------~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l 388 (507)
+|++||++.++++++..+.....|++|... + ++..+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999988888888888532 1 223556788875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=153.10 Aligned_cols=116 Identities=34% Similarity=0.478 Sum_probs=101.3
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433457999999999999999999998766567899999999988 8999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
||++.++++++..+.....|+++. .+.+|++++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988888999873 2357888888764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-20 Score=152.37 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=88.7
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC-ccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~ 335 (507)
.....|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+.. .....|.|+||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4456799999999999998 3 46799999999975 34456799999999999999999999874 34678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
|+|+++++++||++.++++++..+...+.|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999998865555555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=156.81 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=105.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
.|+|+|++|++|+.+|..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999999754 58888866 69999999999999876677999999999988889
Q ss_pred CeeEEEEEECcccCCC----CceEEEEeccccccC-CCCCCCccceEEEEEEEEEec
Q 010550 344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~i~l~l~~~p~ 395 (507)
++||++.++|+++..+ .....|++|...... .+.+..+.+|+|+|+++|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999998743 345678887654210 012335678999999999863
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-19 Score=154.51 Aligned_cols=112 Identities=27% Similarity=0.381 Sum_probs=96.3
Q ss_pred ceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 010550 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~-d~ 337 (507)
..|.|.|+|++|+||+..+ ..|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999998864 56889999999996543 34679999999999999999999997 57789999999 67
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccC
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~ 374 (507)
+..+++++||++.|+|+++..+.....|++|.....+
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 8888999999999999999877777889988765443
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-19 Score=155.68 Aligned_cols=100 Identities=45% Similarity=0.746 Sum_probs=91.7
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~ 340 (507)
...|.|+|+|++|.+|..+|..+++||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999999885 899999999999999999999986 46899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 010550 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~~~~~ 364 (507)
++||+||.+.|++..+...+...+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987655544
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=152.60 Aligned_cols=121 Identities=32% Similarity=0.467 Sum_probs=101.6
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC---CCeEEEEEEEcCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG 341 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~V~d~~~~~ 341 (507)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||+|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998764 58999999999999999999987543 368999999999886
Q ss_pred -CCCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 342 -GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 342 -~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
+|++||++.++++++. .+.....|++|.+.. ..++.+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455667788875421 1235789999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-19 Score=150.68 Aligned_cols=122 Identities=31% Similarity=0.516 Sum_probs=101.0
Q ss_pred eEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467999999999873 23469999999999999999999987 45789999999999988
Q ss_pred CCCeeEEEEEECcccCCCCceE-EEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|++||++.+++.++..+.... .+..+. ..++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999998765543 232221 13567899999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-19 Score=150.15 Aligned_cols=122 Identities=30% Similarity=0.485 Sum_probs=104.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997654 58999999999999999999998766778999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
+||++.+++.++..+.....|+++...... +....+..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667778887654322 233467889999876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=148.88 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=100.2
Q ss_pred EEEEEEEeccccccC-cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 266 L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
|.|+|++|+||+..+ ..|.+||||++++++.. .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997553 36899999999999999999999753 478999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+||++.++++++..+.....|+++.+.. ...+.+|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999877778888885431 123468999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=151.59 Aligned_cols=105 Identities=31% Similarity=0.369 Sum_probs=92.0
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEe-e--cCCCCeEEEEEEEc
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW 337 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~V~d~ 337 (507)
.|.|.|+|++|++|+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997542 3457899999999999999999987 2 34567899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987766777765
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-19 Score=151.57 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=103.0
Q ss_pred EEEEEEEEEeccccccCc--CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
|+|+|+|++|++|+..+. .+.+||||++++++.. .+|++++++.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999997654 58999999999999999999998766789999999999988
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
++++||++.+++.++.. ......|++|..... ......+|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence 99999999999999873 233466777643211 1234579999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=148.72 Aligned_cols=123 Identities=25% Similarity=0.395 Sum_probs=103.0
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|+|++|+||+. ..|.+||||+++++.. ...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 5789999999999742 234699999999999999999999853 46789999999999989999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEecc
Q 010550 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~ 396 (507)
||++.++++++..+.....|+++..... ......|+|++++.|.+..
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEeccc
Confidence 9999999999998777777888753211 1356799999999998743
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=147.84 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=101.4
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+..+....+.+.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999998643 2578874 68999999999998765554689999999999999
Q ss_pred CCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
|++||++.++|.++..+.....|+++.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888788888886531 123467899999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=147.86 Aligned_cols=115 Identities=34% Similarity=0.500 Sum_probs=100.2
Q ss_pred EEEEEEEEEeccccccCc------CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~------~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 689999999999998874 368999999999864 36899999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+.. +|++||++.+++.++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8899999999999998877777888873 2357999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-18 Score=146.32 Aligned_cols=123 Identities=25% Similarity=0.364 Sum_probs=101.8
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
|.++|+|+|++|++|...+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 5899999999999999999988764 67899999999876
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|++||++.+++.++.....+++++. ... ....++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~~l~--~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTLPLR--KRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceEEEcc--cCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998765555554443 211 1234678999999998775
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=151.55 Aligned_cols=123 Identities=32% Similarity=0.443 Sum_probs=103.1
Q ss_pred eEEEEEEEEEeccccccC------------------------------cCCCCCcEEEEEEcCccCCceeeeecCCCCCC
Q 010550 263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP 312 (507)
.|+|.|+|++|++|+++| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999987 246789999999987543 589999999999
Q ss_pred eEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 313 ~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.|||+|.|.+.+. .+.|.|+|||++..+ +++||++.++++++..+.....|+++... ..+..+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEEE
Confidence 9999999998764 468999999999875 58999999999999988888889988543 11234567899999998
Q ss_pred E
Q 010550 393 V 393 (507)
Q Consensus 393 ~ 393 (507)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=149.30 Aligned_cols=110 Identities=34% Similarity=0.407 Sum_probs=94.2
Q ss_pred ccCceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (507)
.....+.|.|+|++|+||+.+|.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 344568899999999999999875 899999999996543 345799999999999999999999863 345789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.++|.++..++....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877766777765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=147.30 Aligned_cols=110 Identities=31% Similarity=0.421 Sum_probs=94.9
Q ss_pred ccCceEEEEEEEEEeccccccCc-CCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 44567899999999999998875 4789999999997543 3457899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.+++.++...+....|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988877888876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=144.54 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=95.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+.. .+||||++++++.. .+|++++++.||+|||+|.|.+.++....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 489999999999877 78999999998643 5999999999999999999998776678999999999976 789
Q ss_pred eeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 345 RLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+||++.++++++.... ....|++|.... +.+.+|+|++++.|
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF 119 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence 9999999999987532 234677775421 24678999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-18 Score=146.77 Aligned_cols=123 Identities=35% Similarity=0.520 Sum_probs=100.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~ 340 (507)
.|+|+|++|++|+..|..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+.. ....|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 234689999999999999999999864 356899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCc------eEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
++|++||++.+++.++..... ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999986532 3456666432 11246799999999883
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-18 Score=146.68 Aligned_cols=110 Identities=31% Similarity=0.567 Sum_probs=96.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4556789999999999999999889999999999965433457999999999999999999998643 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
++.++++++||++.++++++..++....|+++
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 99999999999999999999987778888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=142.66 Aligned_cols=118 Identities=34% Similarity=0.518 Sum_probs=99.6
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 5899999999999999999998653 57899999999988899
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
++||++.+++.++..+.. .|+.+... ....+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999986654 45555322 1234578999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-18 Score=144.14 Aligned_cols=95 Identities=37% Similarity=0.574 Sum_probs=84.5
Q ss_pred EEEEEEEEEeccccccCcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~V~d~~~ 339 (507)
|+|+|+|++|++|+..|.. +.+||||++++.+.....++|++++++.||.|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999965433457999999999999999999987643 35689999999999
Q ss_pred CCCCCeeEEEEEECcccCC
Q 010550 340 VGGHDRLGMQLVPLKLLTP 358 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~ 358 (507)
.++|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999983
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-18 Score=147.66 Aligned_cols=123 Identities=28% Similarity=0.370 Sum_probs=96.5
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEee---------------cCCCC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---------------EPESQ 328 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~~ 328 (507)
|+|+|++|++|+. .+|.+||||++++.+. +..+++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999998 4689999999999763 223468999999999999999999985 12235
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCC-----CCCCccceEEEEEE
Q 010550 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL 390 (507)
Q Consensus 329 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~i~l~l 390 (507)
.|.++|||++..++|++||++.|++.++..+ .....|++|....+..+ ..+....|.+++++
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999888999999999999999876 56677888865533321 11223457777664
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=143.77 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=100.5
Q ss_pred eEEEEEEEEEeccccccCcC----------CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEE
Q 010550 263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL 332 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v 332 (507)
.|.|+|+|++|++|+..+.. |.+||||+++++++.. .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988752 6799999999986543 58999999999999999999996 3578999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCC--CCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 333 ~V~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
.|||++..+++++||++.++|.++.. +.....|++|. +.|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 55677888772 4699999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-18 Score=144.40 Aligned_cols=110 Identities=35% Similarity=0.456 Sum_probs=95.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....+.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 3445689999999999999999889999999999976544457999999999999999999998642 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
++.++++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999877777778765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-18 Score=140.39 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=68.9
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcC----eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----C
Q 010550 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKG----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----R 498 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~ 498 (507)
.+.|.|+|++|+||+..+.+||||++++.. .+++|+++++|+||+|||+|.|.++...+.+ .|.++|||. +
T Consensus 13 ~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~ 92 (118)
T cd08677 13 KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSR 92 (118)
T ss_pred CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCC
Confidence 567999999999999767799999999964 4669999999999999999999987654433 899999998 8
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 93 ~d~IG~v~ 100 (118)
T cd08677 93 HSTLGELR 100 (118)
T ss_pred CceEEEEE
Confidence 89999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-18 Score=144.26 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=92.1
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc---CCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (507)
.....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 445668999999999999998888899999999997655 246799999999999999999999863 246799999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCC-ceEEEEe
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLD 367 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~ 367 (507)
|||++..+++++||++.++|+++.... ....|++
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 999999999999999999999996543 3444543
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=144.00 Aligned_cols=110 Identities=28% Similarity=0.374 Sum_probs=92.0
Q ss_pred ccCceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEE-ee--cCCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~~L~v~V 334 (507)
.....+.|+|+|++|+||+..+.. |.+||||++++.+....++||++++++.||.|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 445568999999999999998876 889999999997655455799999999999999999994 43 22345799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCC--CceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l 368 (507)
||++.+++|++||++.++|+++... +....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999755 456677765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=141.48 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=99.7
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|+|+|++|++|+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998755333468999999999999999999998755678999999999888999
Q ss_pred eeEEEEEECcccCC---CCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 345 ~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+||++.++|.++.. +.....|+++. ..|++++.+++.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 33566788762 2689999988764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=140.51 Aligned_cols=118 Identities=25% Similarity=0.422 Sum_probs=98.1
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|+|++|++|+..+..|.+||||++++++.. ..+|++++++.||.|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 2589999999999999999999864 34789999999999999999
Q ss_pred eEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccceEEEEEEE
Q 010550 346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (507)
Q Consensus 346 lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~ 391 (507)
||++.+++.++... .....|++|... .......|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 99999999888753 235678877432 112456899998874
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=142.86 Aligned_cols=110 Identities=28% Similarity=0.335 Sum_probs=91.2
Q ss_pred ccCceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....+.|.|+|++|+||+..+.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 345568999999999999999875 899999999997653 3456999999999999999999998642 35789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCC---ceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~l 368 (507)
|||++.++++++||++.|+|.++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999996542 33345543
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=141.74 Aligned_cols=120 Identities=25% Similarity=0.433 Sum_probs=98.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC---------CCCeEEEEEE
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF 335 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~V~ 335 (507)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999998654 5899999999999999999975432 1257999999
Q ss_pred EcCCCCCCCeeEEEEE-ECcccCC---CCceEEEEeccccccCCCCCCCccceEEEEEEEEEec
Q 010550 336 DWDKVGGHDRLGMQLV-PLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~ 395 (507)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|++++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999986 4444442 356667887743 24578999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-16 Score=168.26 Aligned_cols=281 Identities=21% Similarity=0.356 Sum_probs=197.5
Q ss_pred CcchHHHHHHHHHHHhhhcccCCcc-------cee---cccc----cccccccCceEEEEEEEEEeccccccCcCCCCCc
Q 010550 222 IPGLYQFIQKCITKYVAGIYIWPQT-------YEI---PILD----ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDP 287 (507)
Q Consensus 222 ip~l~~~~~~~i~~~l~~~~v~P~~-------~~~---~l~~----~~~~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dp 287 (507)
++....-+.+.|.......++.|.+ ++. |+.- .+......++|.++|+|..|.+|......+.+||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 5566666778888888888887776 122 3321 1222367899999999999999998878899999
Q ss_pred EEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCC---ceEE
Q 010550 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEF 364 (507)
Q Consensus 288 yv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~ 364 (507)
|+++.+.+.. ++||-....++||.||+..+..+..+ .+.+.++++|++..+.|..+|++.++++++.... ....
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998743 47898889999999999999888775 4679999999999999999999999999987521 1111
Q ss_pred EEeccccccCCCCCCCccceEEEEEEEEEeccCCccc-----------------------cc-------cc---------
Q 010550 365 TLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIK-----------------------FS-------SV--------- 405 (507)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~-----------------------~~-------~~--------- 405 (507)
+..-..........+.+.+|++.+.+.|+|..-.-.. .. .+
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 2211111111111135678999999999886421000 00 00
Q ss_pred ---cccc---------------------------------------cc---------C--CCC-----------------
Q 010550 406 ---SKKY---------------------------------------SR---------K--GSG----------------- 415 (507)
Q Consensus 406 ---~~~~---------------------------------------~~---------~--~~~----------------- 415 (507)
.+++ +. . .+.
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0000 00 0 000
Q ss_pred -------C---------------------------------C-CC-------CCc-------ccCCCceEEEEEEeeeec
Q 010550 416 -------N---------------------------------D-QS-------SDE-------EALSGAGLLSVLVQGAED 440 (507)
Q Consensus 416 -------~---------------------------------~-~~-------~~~-------~~~~~~g~L~V~v~~a~~ 440 (507)
. . +. .|. ..-..+|.|.|.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 0 00 000 011235679999999999
Q ss_pred CCCC---CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeeeeEe
Q 010550 441 VEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 441 L~~~---~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
|++. +.+||||++.++++ .++|+++++|+||+|||+|...|... ..+.+.+.|+|+ +++.||.+.
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~~knd~lg~~~ 1124 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSGEKNDLLGTAE 1124 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccCCCcccccccc
Confidence 9873 56999999999998 57999999999999999999999875 468899999887 788999874
|
|
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=140.82 Aligned_cols=107 Identities=29% Similarity=0.418 Sum_probs=91.0
Q ss_pred eecccccccccccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec-CC
Q 010550 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PE 326 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~ 326 (507)
.-|+++......+...|.|+|+|++|++|+. +..+.+||||++++++. .++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 3466666554567889999999999999984 66788999999999866 3699999999999999999997533 35
Q ss_pred CCeEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 010550 327 SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (507)
Q Consensus 327 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~ 358 (507)
.+.|.|+|||++..++|++||++.++|.....
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 67999999999999999999999999997663
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-17 Score=139.61 Aligned_cols=118 Identities=31% Similarity=0.455 Sum_probs=100.7
Q ss_pred EEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCCCCeeE
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG 347 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d~~~~~~d~~lG 347 (507)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998654 5899999999999999999999754 4688999999999998999999
Q ss_pred EEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 348 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
++.++++++..+.....|++|... ......|+|+++++|.|....
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCCc
Confidence 999999999988888888887532 123357999999999996544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=138.44 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=81.8
Q ss_pred EEEEEEEEEeccccccCcC----CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 010550 264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~----g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~ 338 (507)
|+|.|+|++|++|+..+.. +.+||||++++++.. +||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999997543 58999999999999999999986543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998653
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-17 Score=138.85 Aligned_cols=118 Identities=36% Similarity=0.554 Sum_probs=95.4
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC--C
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H 343 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~--d 343 (507)
|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCcc--ceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999997532 3689999999999999999999965 6799999999998765 5
Q ss_pred CeeEEEEEECcccCCCC-ceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
++||++.+++.++.... ....|+++... .+ ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence 79999999999987554 33556666322 11 12355689998876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=139.88 Aligned_cols=111 Identities=38% Similarity=0.556 Sum_probs=95.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~V~ 335 (507)
.....+.|+|+|++|++|+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 345568999999999999999988999999999996543345799999999999999999997532 23567999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|++..+++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999999999999999999999887888888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=140.23 Aligned_cols=109 Identities=28% Similarity=0.372 Sum_probs=95.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEE-ee--cCCCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~~L~v~V~ 335 (507)
.....+.|.|+|++|+||+..+..|.+||||++.+.+.+..+++|+++++ .||+|||+|.|. +. +.....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 45566899999999999999998889999999998766556679999888 999999999998 54 224678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|++.++++++||++.++|+++..+.....|++|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999999999999999999888888888876
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-17 Score=140.49 Aligned_cols=105 Identities=24% Similarity=0.267 Sum_probs=87.7
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~ 338 (507)
..+.|.|+|++|+||+..+ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4588999999999999998 7899999999997643 23468999999999999999999986422 357899999998
Q ss_pred CCC-CCCeeEEEEEECcccCCCCceEEEEe
Q 010550 339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 339 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
... ++++||++.+++.++..++....|+.
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 765 46899999999999986665566664
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=135.33 Aligned_cols=99 Identities=30% Similarity=0.451 Sum_probs=87.1
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.|.|+|++|++|+..+..+.+||||+++++++. ++|++++++.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT---QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE---EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 388999999999999888999999999999743 689999999999999999999998777899999999985 78
Q ss_pred eeEEEEEECcccCCCC--ceEEEEecc
Q 010550 345 RLGMQLVPLKLLTPHE--TKEFTLDLL 369 (507)
Q Consensus 345 ~lG~~~i~l~~l~~~~--~~~~~~~l~ 369 (507)
+||++.++|.++.... ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999997653 456777763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-17 Score=139.37 Aligned_cols=110 Identities=30% Similarity=0.332 Sum_probs=93.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 345568999999999999999988999999999996532 345799999999999999999999853 2357899999
Q ss_pred EEcCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||++.. +++++||++.+++.++..++....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777777765
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-17 Score=139.61 Aligned_cols=110 Identities=31% Similarity=0.414 Sum_probs=92.7
Q ss_pred ccCceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....|.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4456789999999999999988 67899999999986432 2457899999999999999999998642 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.++|+++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999766666667654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=138.11 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=89.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC---CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~ 333 (507)
.....|.|+|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 345568999999999999999888999999999997532 2356899999999999999999986432 35789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+++++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 233456654
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=136.28 Aligned_cols=110 Identities=28% Similarity=0.386 Sum_probs=95.0
Q ss_pred ccCceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~ 335 (507)
.+...+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 4556789999999999999988 678899999999865433457899999999999999999998643 2458999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|++..+++++||++.++|+++........|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 999988899999999999999988888888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=135.64 Aligned_cols=115 Identities=32% Similarity=0.511 Sum_probs=94.1
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV---- 340 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~---- 340 (507)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 5899999999999999999998654 46899999999852
Q ss_pred -------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 341 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4689999999999998644 34666664431 2346799999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-16 Score=137.04 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=97.3
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCCceeeeecCCCCCCeEeeEEEEEeecCC--------CCeEEEE
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ 333 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~ 333 (507)
|.|+|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445554444444778777889999999997 334445679999999999999999999996432 4579999
Q ss_pred EEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 334 V~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
|||++.+ ++|++||++.++|+.+..+.....++++... .....|.|+++++...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999986 5799999999999999887666678887532 2456799999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=133.27 Aligned_cols=113 Identities=42% Similarity=0.632 Sum_probs=96.9
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|+|+|++|++|+..+..+.+||||++++.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997643 3689999999999999999999976667889999999999889999
Q ss_pred eEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEE
Q 010550 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIV 387 (507)
Q Consensus 346 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~ 387 (507)
||++.+++.++..+.....|+++... ++...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-------g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-------GGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-------CCccCceEE
Confidence 99999999999988888888887532 344566654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=140.12 Aligned_cols=106 Identities=37% Similarity=0.552 Sum_probs=90.1
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC--------------------------CceeeeecCCCCC
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN 311 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~~T~v~~~t~n 311 (507)
....+.+.|.|+|++|++|...|..|.+||||++++.+... ..++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 46678999999999999999999999999999999964311 2368999999999
Q ss_pred CeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 312 P~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|.|||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. .....|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 7899999999999983 334556553
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=137.27 Aligned_cols=115 Identities=22% Similarity=0.347 Sum_probs=95.6
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~V~d~~~ 339 (507)
+|+|+|++|++|+..+..+.+||||++++++.. +++|++.. ++.||.|||.|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999888999999999998722 35888875 5899999999999997753 6789999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccceEEEE
Q 010550 340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV 388 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~i~l 388 (507)
.++|++||++.+++.++..+.. ...|+++... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999986643 3567777532 3677898874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=134.27 Aligned_cols=101 Identities=30% Similarity=0.419 Sum_probs=86.3
Q ss_pred EEEEEEEeccccccCc-CCCCCcEEEEEEcCccCCceeeeecCCCCCCeE-eeEEEEEeecC--CCCeEEEEEEEcCCCC
Q 010550 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG 341 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~--~~~~L~v~V~d~~~~~ 341 (507)
|.|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999999884 688999999999863 468999999999999 99999998753 2468999999999999
Q ss_pred CCCeeEEEEEECcccCCC---CceEEEEecc
Q 010550 342 GHDRLGMQLVPLKLLTPH---ETKEFTLDLL 369 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~---~~~~~~~~l~ 369 (507)
++++||++.+++.++... .....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3355666653
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.5e-17 Score=139.40 Aligned_cols=108 Identities=25% Similarity=0.275 Sum_probs=88.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....+.|.|+|++|+||+..+..|.+||||++++.+. +..+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 34456789999999999999998899999999999653 3345689999999999999999999864 3467899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||+|..+++++||++.++.... ++..+.|.++
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~m 121 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQM 121 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHH
Confidence 9999999999999999977643 3333444443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=142.25 Aligned_cols=109 Identities=34% Similarity=0.336 Sum_probs=92.2
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQV 334 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~V 334 (507)
..+.|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 4467999999999999999998899999999998542 2345799999999999999999998532 2346899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||++.+++|++||++.+++.++........|+++
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999876666666655
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=132.76 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=82.9
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
++.|.|+|++|++|+.++ ..||||++++++++ .+|++.++ .||.|||.|.|.+.+.. ..|.++|||++.+ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-C
Confidence 378999999999997654 56999999998754 48888877 59999999999997754 4599999999865 8
Q ss_pred CCeeEEEEEECcccCCCCce--EEEEeccccc
Q 010550 343 HDRLGMQLVPLKLLTPHETK--EFTLDLLKHT 372 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~ 372 (507)
||+||++.++|.++..++.. ..|++|....
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999999865444 5677775443
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=135.95 Aligned_cols=103 Identities=36% Similarity=0.562 Sum_probs=89.8
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~V~d~~~ 339 (507)
|.|.|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999998888899999999997654 4777777 489999999999999876 35789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
.++|++||++.+++.++..+.....|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999998776667777664
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=138.80 Aligned_cols=108 Identities=25% Similarity=0.308 Sum_probs=88.0
Q ss_pred ccCceEEEEEEEEEeccccccCc--CCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v 332 (507)
.....|.|.|+|++|+||+..|. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 34456889999999999999883 355999999999764 4456799999999999999999999864 23678999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 333 ~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
+|||+|.++++++||++.+++.. .++..+.|.++
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 99999999999999999999975 33344445444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=136.82 Aligned_cols=92 Identities=26% Similarity=0.494 Sum_probs=78.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~-----~~~dPyv~v~~~~ 457 (507)
.|+|.++++|.| .++.|.|.|++|+||... +.+||||++++..
T Consensus 1 ~Gel~~sL~Y~~--------------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 1 TGEVLLSISYLP--------------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCEEEEEEEEeC--------------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 499999999998 345699999999999753 3489999999865
Q ss_pred e-----EEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 458 D-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
. ++||++++++.||+|||.|.|.++...+.+ .|.++|||+ ++++||+|.
T Consensus 49 ~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~ 107 (138)
T cd08407 49 QNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCS 107 (138)
T ss_pred CCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEE
Confidence 2 459999999999999999999998754433 899999998 789999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-16 Score=165.86 Aligned_cols=130 Identities=28% Similarity=0.468 Sum_probs=109.8
Q ss_pred ceEEEEEEEEEeccccccCc------------------------------------------CCCCCcEEEEEEcCccCC
Q 010550 262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP 299 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~ 299 (507)
-.|.|.++|.+|++|+++|. .+++||||+|.+++++.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv- 90 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL- 90 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce-
Confidence 35889999999998875321 24679999999986543
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCC
Q 010550 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379 (507)
Q Consensus 300 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~ 379 (507)
.||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+|++++..++....|+++..... +.
T Consensus 91 -~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 91 -ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred -eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 58999999999999999999998864 58999999999986 5899999999999999999999999976533 23
Q ss_pred CccceEEEEEEEEEeccCCc
Q 010550 380 MKQRGKIVVELTYVPFKEDS 399 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~ 399 (507)
.+..|+|+++++|.|+..+.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 56679999999999998764
|
|
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=135.31 Aligned_cols=93 Identities=33% Similarity=0.519 Sum_probs=83.2
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||.|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999889999999999987653 357788889999999999999987777789999999999999999
Q ss_pred eeEEEEEECcccCC
Q 010550 345 RLGMQLVPLKLLTP 358 (507)
Q Consensus 345 ~lG~~~i~l~~l~~ 358 (507)
+||++.+++++..-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=131.75 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=93.8
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccC----------CceeeeecCCCCCCeE-eeEEEEEeecCCCCeEEEE
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ 333 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~ 333 (507)
+..|++++|++|+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 67789999999999965432 2579999999999999 999999985 35789999
Q ss_pred EEEcCCCCC---CCeeEEEEEECcccCCCC---ceEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 334 V~d~~~~~~---d~~lG~~~i~l~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
|||++..++ +++||++.+++.++..+. ...+++++.+.. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 789999999999997553 345666665432 2356789998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=137.03 Aligned_cols=93 Identities=45% Similarity=0.708 Sum_probs=84.9
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
.|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999999887 899999999998654 6899999999999999999999876 6789999999999999
Q ss_pred CCeeEEEEEECcccCCCC
Q 010550 343 HDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~~ 360 (507)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999998653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=132.81 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=89.6
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
|+|+|+|++|++|+..+..+.+||||++++++.. ..+|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999997543 36889999999999999999988664 47899999999999999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccc
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
++||++.+++.++..+ ....|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 4556666543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-16 Score=135.61 Aligned_cols=91 Identities=26% Similarity=0.470 Sum_probs=77.1
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~-- 458 (507)
|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++...
T Consensus 2 G~i~~sL~Y~~~--------------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~ 49 (136)
T cd08406 2 GEILLSLSYLPT--------------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGR 49 (136)
T ss_pred cEEEEEEEEcCC--------------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc
Confidence 899999999972 3459999999999975 357999999999432
Q ss_pred ---EEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 459 ---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
++||++++++.||+|||+|.|.+....+.+ .|.|+|||+ ++++||++.
T Consensus 50 ~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~ 105 (136)
T cd08406 50 KISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVI 105 (136)
T ss_pred cccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEE
Confidence 459999999999999999999987654434 899999998 689999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-16 Score=135.68 Aligned_cols=93 Identities=35% Similarity=0.600 Sum_probs=81.4
Q ss_pred EEEEEEEEeccccccCcCC--------------CCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC-CCe
Q 010550 265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQI 329 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~ 329 (507)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999765 48999999999999999999976443 568
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 010550 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 330 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
|.|+|||+|..++|++||++.+++.++...+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-16 Score=134.44 Aligned_cols=100 Identities=35% Similarity=0.519 Sum_probs=86.7
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecC----CCCeEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQILQ 331 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~ 331 (507)
....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.
T Consensus 12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 34567899999999999999888999999999997532 2457999999999999999999998652 356899
Q ss_pred EEEEEcCCCCCCCeeEEEEEECcccCCC
Q 010550 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 332 v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
|+|||++..++|++||++.++|+++..-
T Consensus 92 ~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 92 FTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 9999999999999999999999999853
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-16 Score=132.16 Aligned_cols=92 Identities=23% Similarity=0.442 Sum_probs=77.6
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dPyv~v~~~~- 457 (507)
+|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~ 48 (125)
T cd04029 1 SGEILFSLSYDY--------------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence 499999999986 34669999999999975 25799999999952
Q ss_pred ----eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||+|.|.+..... +..|.++|||+ ++++||++.
T Consensus 49 ~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~ 106 (125)
T cd04029 49 KSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVE 106 (125)
T ss_pred CccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEE
Confidence 35699999999999999999999876433 34899999998 678999985
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-16 Score=135.12 Aligned_cols=109 Identities=35% Similarity=0.412 Sum_probs=90.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 34457999999999999999998899999999999753 23457899999999999999999998643 356899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
||++..+++++||++.+++... ++....|+++.
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred EeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 9999988999999999999863 33445565553
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=131.52 Aligned_cols=92 Identities=18% Similarity=0.378 Sum_probs=78.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 ~G~i~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~ 48 (128)
T cd08392 1 TGEIEFALHYNF--------------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD 48 (128)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence 489999999996 245799999999999752 6789999999953
Q ss_pred ----eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||+|.|.+....+. ..|.++|||. ++++||++.
T Consensus 49 ~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~ 106 (128)
T cd08392 49 KSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVL 106 (128)
T ss_pred CcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEE
Confidence 356999999999999999999998765444 4999999998 678999985
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-16 Score=150.54 Aligned_cols=214 Identities=29% Similarity=0.418 Sum_probs=160.0
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEE--eecC-CCCeEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV--VKEP-ESQILQLQV 334 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~--v~~~-~~~~L~v~V 334 (507)
+.....+..++.+|++|+.++.++..|||++..+.+. +..+.+|++..+++||.|+|+-... ..+. ....+++.|
T Consensus 89 ~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~v 168 (362)
T KOG1013|consen 89 DSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVV 168 (362)
T ss_pred hhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheee
Confidence 3445678899999999999999999999999999764 3334678899999999999865443 3322 245678899
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccC--CCCCCCccceEEEEEEEEEeccCCcccccccccccccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI--SDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRK 412 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~ 412 (507)
.|.+.+..++++|+..+++..+.+.+.+.+..-|.+.+.+ .+......+|+|.+++.|-..
T Consensus 169 cdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~----------------- 231 (362)
T KOG1013|consen 169 CDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST----------------- 231 (362)
T ss_pred ccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC-----------------
Confidence 9999999999999999999999887655443322222221 111123567888888765531
Q ss_pred CCCCCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCC
Q 010550 413 GSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEP 484 (507)
Q Consensus 413 ~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~ 484 (507)
..-+.|++.+|..|.. ++.+||||+.++... ++||.+.++|.||+||++|.|.+...
T Consensus 232 ---------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pg 296 (362)
T KOG1013|consen 232 ---------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPG 296 (362)
T ss_pred ---------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCcc
Confidence 1227788888888864 468999999998532 46999999999999999999999876
Q ss_pred CCC-ceEEEEEEEC----CCCeeeeE
Q 010550 485 PLH-EKIHIEVMSK----RTGVIGAC 505 (507)
Q Consensus 485 ~~~-~~L~v~V~d~----~~~~iG~~ 505 (507)
.+. .++.|.|||. +++++|.+
T Consensus 297 dLa~~kv~lsvgd~~~G~s~d~~GG~ 322 (362)
T KOG1013|consen 297 DLAYKKVALSVGDYDIGKSNDSIGGS 322 (362)
T ss_pred chhcceEEEeecccCCCcCccCCCcc
Confidence 553 3899999998 56777754
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=128.12 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=85.8
Q ss_pred cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC-
Q 010550 281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH- 359 (507)
Q Consensus 281 ~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~- 359 (507)
.+|.+||||+++++++. .++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998653 25899999999999999999999877678899999999988 899999999999998643
Q ss_pred CceEEEEeccccccCCCCCCCccceEEEEEEEEEec
Q 010550 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~ 395 (507)
.....|++|. ....|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3346777763 1357999999999983
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=131.41 Aligned_cols=92 Identities=23% Similarity=0.456 Sum_probs=77.5
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~- 457 (507)
+|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~ 48 (125)
T cd08393 1 QGSVQFALDYDP--------------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence 599999999986 235699999999999763 5799999999952
Q ss_pred ----eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 ----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||.|.|.+...... ..|.++|||. ++++||+++
T Consensus 49 ~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~ 106 (125)
T cd08393 49 KSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVE 106 (125)
T ss_pred CCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEE
Confidence 346999999999999999999998754333 4899999998 678999985
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=131.86 Aligned_cols=107 Identities=30% Similarity=0.394 Sum_probs=91.3
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCc-cCCceeeeecCCCCCCeEeeEEEEEeecC---------------CCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI 329 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~ 329 (507)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 12346899999999999999999998765 4578
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccc
Q 010550 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (507)
Q Consensus 330 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~ 373 (507)
|.|+|||++..+++++||++.+++.++........|++|.+...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 99999999988899999999999999987777788888866533
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-16 Score=134.74 Aligned_cols=98 Identities=32% Similarity=0.448 Sum_probs=84.5
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4456789999999999999988889999999999843 33345689999999999999999998752 2356899999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l 356 (507)
||++..+++++||++.+++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9999999999999999999886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=126.96 Aligned_cols=98 Identities=28% Similarity=0.362 Sum_probs=83.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~V~d~~~ 339 (507)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 36899999999998 4789999999999764 58999999999999999999986433 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCce---EEEEec
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETK---EFTLDL 368 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~l 368 (507)
+++|++||++.++|+++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 98999999999999999766433 446655
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=127.43 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=93.3
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
..|.|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+. ..+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 2469999999999999999999985 357899999999999999
Q ss_pred CeeEEEEEECcccCCCCc-----eEEEEeccccccCCCCCCCccceEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~i~l~l 390 (507)
++||++.++|.++..... ...|+++.+... ......|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999875432 234666643211 0346789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=132.74 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=86.3
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc---cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v 332 (507)
......+.|.|+|++|+||+..+..|.+||||++++.+. ...+++|++++++.||+|||+|.|.+.. ..+..|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 345567999999999999999998899999999999643 2235689999999999999999999873 34679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccC
Q 010550 333 QVFDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 333 ~V~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
+|||++..+++++||++.+++....
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999999999999999987654
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=129.71 Aligned_cols=99 Identities=31% Similarity=0.453 Sum_probs=86.4
Q ss_pred EEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC----CC
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG 341 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~----~~ 341 (507)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999998653 124689999999999999999998765556789999999997 78
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEec
Q 010550 342 GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
++++||++.++++++..++....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777778777
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-16 Score=135.67 Aligned_cols=107 Identities=31% Similarity=0.400 Sum_probs=87.9
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~ 335 (507)
....+.|.|+|++|++|+..|..|.+||||++++.+. ...+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 3456889999999999999998899999999998543 23456899999999999999999998632 3467999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|++..+++++||++.+++... +.....|.++
T Consensus 91 d~d~~~~~~~iG~~~~~~~~~--~~~~~~w~~l 121 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKAS--GSGGHHWKEV 121 (136)
T ss_pred ECCCCCCCccEEEEEECCcCC--CchHHHHHHH
Confidence 999999999999999999983 3334445544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-15 Score=128.44 Aligned_cols=127 Identities=16% Similarity=0.212 Sum_probs=100.7
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
-...|.|.|++|++|+.++ +|||++.+++... .||+++.++.||.|+|+|+|..... ...++|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 3467999999999998865 8999999998764 6999999999999999999986543 467999998765322
Q ss_pred ----CCCeeEEEEEECcccCCCCceEEEEeccccccCCC---CCCCccceEEEEEEEEEecc
Q 010550 342 ----GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 342 ----~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~i~l~l~~~p~~ 396 (507)
++++||.+.||+.++..+...+.|+++.......+ .......++|+++++|.+..
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 57899999999999999888899999865422110 00124558999999999854
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=129.25 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=66.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeecCCC-CCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-----~~~kT~v~~~t~-nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
.+|.|.|+|.+|+||+.. +.+||||+|++.+ +++||+++++|. ||+|||+|.|.+.....+-+|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 456799999999999863 4579999999842 356999999995 6999999999998754333899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
++++||++.
T Consensus 92 ~~~~~n~~IG~v~ 104 (135)
T cd08692 92 SSVRRKHFLGQVW 104 (135)
T ss_pred CCCcCCceEEEEE
Confidence 689999985
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=128.65 Aligned_cols=108 Identities=37% Similarity=0.507 Sum_probs=91.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 333 (507)
.+...+.|+|+|++|++|+..+..+.+||||++++.+. .....+|++++++.||.|||+|.|.... ..+..+.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44556889999999999999888889999999998532 2345799999999999999999996322 235689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
|||++.. .+++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999988 88999999999999999888887764
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=125.23 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=68.9
Q ss_pred eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----
Q 010550 429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~-------~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---- 497 (507)
|+|.|+|.+|+||+.. +.+||||+++++++++||++++++.||+|||.|.|.+.....+..|.++|||+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999853 24899999999988889999999999999999999987654445899999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 81 ~dd~IG~~~ 89 (108)
T cd04039 81 FNDYVATGS 89 (108)
T ss_pred CCcceEEEE
Confidence 689999985
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-16 Score=134.21 Aligned_cols=98 Identities=37% Similarity=0.545 Sum_probs=84.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4556799999999999999999889999999999953 333456899999999999999999998632 235799999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l 356 (507)
||++.+++|++||++.+++...
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC
Confidence 9999999999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=131.88 Aligned_cols=78 Identities=26% Similarity=0.559 Sum_probs=72.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
.-|.|+|.|.+|.||..+ +++||||.+.+++++.||+++++++||+|||.|+|.+.++ +..|.++|||+ +|
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 468999999999999763 5799999999999999999999999999999999999998 68999999999 89
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
|+||.++
T Consensus 82 D~mG~A~ 88 (168)
T KOG1030|consen 82 DFMGEAT 88 (168)
T ss_pred cccceee
Confidence 9999875
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=129.07 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=85.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCC-CCeEeeEEEEEeecCC-CCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~V 334 (507)
.....|.|+|+|++|+||++.+..+.+||||++++-. .+..++||+++++|. ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 3456689999999999999876567789999999853 345578999999996 6999999999997533 34788999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 367 (507)
||++..+++++||++.++.+.... ...+.|.+
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~ 120 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKD 120 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCc-hhhhhHHH
Confidence 999998999999999999987432 22344444
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=128.16 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=64.9
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEe-cCCC-CCceEEEEEEEC---
Q 010550 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFML-DEPP-LHEKIHIEVMSK--- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~--~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v-~~~~-~~~~L~v~V~d~--- 497 (507)
.|.|+|++|+||+. .+.+||||++++.. .++||++++++.||+|||+|.|.+ .... ....|.++|||+
T Consensus 14 ~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 14 TLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 49999999999976 35799999999963 367999999999999999999987 3222 235899999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 94 ~~~~~lG~~~ 103 (122)
T cd08381 94 VENEFLGGVC 103 (122)
T ss_pred cCCcEEEEEE
Confidence 689999985
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=132.28 Aligned_cols=108 Identities=33% Similarity=0.475 Sum_probs=87.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4456799999999999999999899999999999853 23445789999999999999999998753 2245799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
||++..+++++||++.+++... ++....|.++
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 9999999999999999998733 3333444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=129.51 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=76.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~ 455 (507)
....|+|++++.|. .+.|.|+|++|+||+.. +.+||||++++
T Consensus 14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L 59 (146)
T cd04028 14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL 59 (146)
T ss_pred CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence 45679999999883 24599999999999752 46899999999
Q ss_pred cC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEE-C----CCCeeeeEe
Q 010550 456 KG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS-K----RTGVIGACG 506 (507)
Q Consensus 456 ~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d-~----~~~~iG~~~ 506 (507)
.. .++||+++++|+||+|||+|.|.+.. .+..|.|+||| . ++++||++.
T Consensus 60 lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l--~~~~L~v~V~~d~~~~~~~~~iG~~~ 118 (146)
T cd04028 60 LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP--TGKTLQVIVWGDYGRMDKKVFMGVAQ 118 (146)
T ss_pred ECCCccccceeceecCCCCCCccCCeEEEEEcC--CCCEEEEEEEeCCCCCCCCceEEEEE
Confidence 53 25699999999999999999999982 45799999995 3 678999985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=130.92 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=82.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....|.|+|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+.. .....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 34456899999999999999998899999999998432 2345789999999999999999999853 2344799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
||++..+++++||++.+......
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCC
Confidence 99999999999999987654433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=131.96 Aligned_cols=104 Identities=22% Similarity=0.424 Sum_probs=82.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--- 456 (507)
+|+|.++++|.|...+.... ......|.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~--------------------~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~ 60 (162)
T cd04020 1 RGELKVALKYVPPESEGALK--------------------SKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60 (162)
T ss_pred CceEEEEEEecCcccccccc--------------------ccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence 59999999999976542211 1122578999999999999864 579999999983
Q ss_pred --CeEEEeeeecCCCCCcccceEEEEecCC-CC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEP-PL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 --~~~~kT~v~~~t~nP~wnE~f~f~v~~~-~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
..++||++++++.||+|||.|.|.+... .. +..|.|+|||+ ++++||++.
T Consensus 61 ~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~ 118 (162)
T cd04020 61 SKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVR 118 (162)
T ss_pred CCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEE
Confidence 2467999999999999999999986432 12 24799999998 589999985
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-15 Score=133.04 Aligned_cols=110 Identities=27% Similarity=0.292 Sum_probs=90.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3445688999999999999988 788999999998753 2345689999999999999999999863 3457899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
||++..+++++||++.++......++....|.++.
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 99999999999999999977666555555555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-15 Score=129.07 Aligned_cols=92 Identities=25% Similarity=0.441 Sum_probs=77.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC--CCCCcEEEEEEcC---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE--NHNNPYAIILYKG--- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~--- 457 (507)
.|+|++++.|.| ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~ 48 (137)
T cd08409 1 LGDIQISLTYNP--------------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK 48 (137)
T ss_pred CcEEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence 389999999997 234599999999999753 5799999999864
Q ss_pred --eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++||++++++.||+|||.|.|.+...+.. ..|.++|||. ++++||+++
T Consensus 49 ~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ 104 (137)
T cd08409 49 VVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVV 104 (137)
T ss_pred EeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEE
Confidence 356999999999999999999999765454 4899999998 688999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=120.00 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=75.1
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc------
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------ 337 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~------ 337 (507)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 689999999995 568999999997532 34579999999999999999999986 367999999998
Q ss_pred -CCCCCCCeeEEEEEECc--ccCCCCceEEEEe
Q 010550 338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLD 367 (507)
Q Consensus 338 -~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~ 367 (507)
|..++|+++|.+.+.|+ .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988887774 4444433443343
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-15 Score=125.31 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=67.5
Q ss_pred CceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMS 496 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d 496 (507)
..+.|.|+|++|+||+. ++.+||||++++-. .++||++++++.||+|||+|.|.+....+. ..|.++|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 34669999999999975 35799999999842 357999999999999999999998765444 399999999
Q ss_pred C----CCCeeeeEe
Q 010550 497 K----RTGVIGACG 506 (507)
Q Consensus 497 ~----~~~~iG~~~ 506 (507)
. ++++||+++
T Consensus 92 ~~~~~~~~~lG~~~ 105 (124)
T cd08680 92 VGPDQQEECLGGAQ 105 (124)
T ss_pred CCCCCceeEEEEEE
Confidence 7 678999975
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=123.53 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=67.3
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
|.|.|+|.+|++++.. +.+||||++.+++++.+|+++++ +.||+|||+|.|.+... .+.|.|+|||+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCCCcCCce
Confidence 7899999999998653 68999999999999999999876 89999999999999764 36899999998 6799
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 iG~~~ 84 (121)
T cd04016 80 IAWTH 84 (121)
T ss_pred EEEEE
Confidence 99874
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=120.71 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=87.2
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCCCCCC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH 343 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V~d~~~~~~d 343 (507)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999876 789999999998643 258999888 99999999999987532 35678888888766556
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
..+|.+. +..+..+...+.|++|...- ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566677888875421 124568999999976
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-15 Score=127.80 Aligned_cols=91 Identities=27% Similarity=0.480 Sum_probs=76.5
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC---
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--- 457 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~--- 457 (507)
|+|.++++|.| ..|.|.|+|++|+||+.. +.+||||++++..
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~ 48 (135)
T cd08410 1 GELLLSLNYLP--------------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK 48 (135)
T ss_pred CcEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence 78999999997 246699999999999763 5799999999832
Q ss_pred --eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
++++|+++++|.||+|||.|.|.+......+ .|.++|||+ ++++||++.
T Consensus 49 ~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~ 104 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIV 104 (135)
T ss_pred ccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEE
Confidence 3469999999999999999999996544433 799999998 789999974
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=124.85 Aligned_cols=92 Identities=28% Similarity=0.470 Sum_probs=75.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEcC-
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++..
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNS--------------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 699999999986 245699999999999862 5689999999853
Q ss_pred --eEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++||++++++.||+|||.|.|. +..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~ 106 (128)
T cd08388 50 KEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVV 106 (128)
T ss_pred cCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEE
Confidence 35699999999999999999994 443222 23799999997 689999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=126.02 Aligned_cols=105 Identities=35% Similarity=0.503 Sum_probs=90.4
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC-CCCeEEEEEEEcCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV 340 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~V~d~~~~ 340 (507)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22347899999999999999999998653 356899999999988
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
+++++||++.++++++... ....|+++.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 8999999999999999865 566788774
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-14 Score=121.68 Aligned_cols=119 Identities=30% Similarity=0.414 Sum_probs=93.9
Q ss_pred EEEEEEEEeccccccC--cCCCCCcEEEEEEcCcc---CCceeeeecCCCC-CCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 010550 265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD 338 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~V~d~~ 338 (507)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ..+.+|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 2457899887765 9999999999998766678999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.. ++++||++.++++++..+. .++++... .......|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34455321 1112456899888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=124.25 Aligned_cols=92 Identities=24% Similarity=0.462 Sum_probs=77.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--- 456 (507)
+|+|++++.|.+ ..|.|.|+|++|+||+.. +.+||||++++.
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~ 49 (124)
T cd08387 2 RGELHFSLEYDK--------------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR 49 (124)
T ss_pred CCEEEEEEEECC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence 699999999986 246799999999999863 579999999994
Q ss_pred CeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+.++|++++++.||+|||.|.|.+..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~ 104 (124)
T cd08387 50 SNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVE 104 (124)
T ss_pred CCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEE
Confidence 235799999999999999999999876433 34899999998 688999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=121.42 Aligned_cols=96 Identities=32% Similarity=0.539 Sum_probs=80.0
Q ss_pred EEEEeccccccCcCCCCCcEEEEEEcCcc---CCceeeeecCCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCCCC
Q 010550 269 KVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVG 341 (507)
Q Consensus 269 ~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~V~d~~~~~ 341 (507)
-.++|++|+..|..|.+||||++++.+.. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 45699999999999999999999987542 234799999999999999 6888764322 578999999999999
Q ss_pred CCCeeEEEEEECcccCCCCceEEE
Q 010550 342 GHDRLGMQLVPLKLLTPHETKEFT 365 (507)
Q Consensus 342 ~d~~lG~~~i~l~~l~~~~~~~~~ 365 (507)
+|++||++.++++++...+..++.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCCceEE
Confidence 999999999999999866555543
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=123.08 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=66.1
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---- 497 (507)
+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+......+.|.++|||+
T Consensus 12 ~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~ 91 (119)
T cd08685 12 RKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKS 91 (119)
T ss_pred CEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCc
Confidence 4699999999999764 5789999999964 3569999999999999999999987654445899999997
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 92 ~~~~~lG~~~ 101 (119)
T cd08685 92 RDSGLLGCMS 101 (119)
T ss_pred CCCEEEEEEE
Confidence 367999975
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=121.13 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=68.1
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeE
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGAC 505 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~ 505 (507)
+.|+|+|.+|++|++++..||||++.+++++.+|+++++ .||.|||.|.|.+.+. +..|.|+|||+ .|++||++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~~~DD~lG~v 78 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGLIWDTLVGTV 78 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCCcCCCceEEE
Confidence 469999999999998888899999999998889999988 5999999999999775 45699999999 89999998
Q ss_pred e
Q 010550 506 G 506 (507)
Q Consensus 506 ~ 506 (507)
.
T Consensus 79 ~ 79 (127)
T cd08394 79 W 79 (127)
T ss_pred E
Confidence 5
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=123.83 Aligned_cols=75 Identities=21% Similarity=0.494 Sum_probs=66.7
Q ss_pred EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC------
Q 010550 430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK------ 497 (507)
Q Consensus 430 ~L~V~v~~a~~---L~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~------ 497 (507)
+|.|+|++|++ |+. .+.+||||++.+++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 38999999999 654 36899999999999999999999999999999999999875 35899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
.|++||++.
T Consensus 79 ~~~~~dd~lG~~~ 91 (126)
T cd08379 79 EAVQPDVLIGKVR 91 (126)
T ss_pred ccCCCCceEEEEE
Confidence 578999975
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-15 Score=129.75 Aligned_cols=108 Identities=37% Similarity=0.427 Sum_probs=90.5
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVF 335 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V~ 335 (507)
....+.|.|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 3445899999999999999888889999999999754 233468999999999999999999986543 578999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|++..+++++||++.+++++ .+.....|+++.
T Consensus 90 d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 121 (134)
T cd00276 90 DKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML 121 (134)
T ss_pred ecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence 99988899999999999999 444556666664
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-15 Score=148.50 Aligned_cols=108 Identities=32% Similarity=0.487 Sum_probs=91.7
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC-CCCeEEEEEEEc
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW 337 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~V~d~ 337 (507)
.....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+... ..+.|.++|||+
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3456899999999999999999999999999996542 3457899999999999999999998743 367899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|+.+++||+|..++.+++|... +..-|+.++
T Consensus 257 DrTsRNDFMGslSFgisEl~K~-p~~GWyKlL 287 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKA-PVDGWYKLL 287 (683)
T ss_pred cccccccccceecccHHHHhhc-chhhHHHHh
Confidence 9999999999999999999865 344455554
|
|
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=123.11 Aligned_cols=92 Identities=27% Similarity=0.458 Sum_probs=76.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 2 ~G~l~~~l~~~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~ 49 (125)
T cd04031 2 TGRIQIQLWYDK--------------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49 (125)
T ss_pred cEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence 599999999986 346799999999999763 5799999999965
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCC-CC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEP-PL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~-~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||+|||.|.|.+... +. ...|.++|||+ ++++||++.
T Consensus 50 ~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~ 107 (125)
T cd04031 50 SEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVV 107 (125)
T ss_pred CccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEE
Confidence 456999999999999999999986442 12 35899999998 578999985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=119.13 Aligned_cols=76 Identities=24% Similarity=0.506 Sum_probs=68.3
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-CCCeeeeE
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-RTGVIGAC 505 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-~~~~iG~~ 505 (507)
.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|+ .+++||++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~~~~iG~~ 79 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKTGKSLGSL 79 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCCCCccEEE
Confidence 389999999999853 5899999999999999999999999999999999999885 357899999998 57899997
Q ss_pred e
Q 010550 506 G 506 (507)
Q Consensus 506 ~ 506 (507)
.
T Consensus 80 ~ 80 (105)
T cd04050 80 T 80 (105)
T ss_pred E
Confidence 5
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=122.52 Aligned_cols=92 Identities=27% Similarity=0.398 Sum_probs=77.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDF--------------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 599999999986 345799999999999863 5789999999853
Q ss_pred -eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 -DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 -~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+.++|++++++.||+|||.|.|.+..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~ 104 (124)
T cd08385 50 KKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVR 104 (124)
T ss_pred CCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEE
Confidence 35699999999999999999999875433 34899999997 678999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=122.39 Aligned_cols=80 Identities=29% Similarity=0.537 Sum_probs=70.0
Q ss_pred CceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
..|.|+|+|++|++|+. .+.+||||+++++++++||++++++.||+|||+|.|.....+..+.|.|+|||+ .|+
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd 105 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD 105 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence 45899999999999975 357899999999999999999999999999999999854443457999999998 789
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 106 ~IG~~~ 111 (127)
T cd04032 106 LLGTCS 111 (127)
T ss_pred eeEEEE
Confidence 999975
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=124.98 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=66.7
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC------eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC
Q 010550 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~ 497 (507)
.+.|.|+|.+|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+...... ..|.++|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 45699999999999863 5799999999953 245999999999999999999999764333 4999999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
++++||++.
T Consensus 94 ~~~~~~~~iG~v~ 106 (138)
T cd08408 94 RKMKRKEMIGWFS 106 (138)
T ss_pred CCCCCCcEEEEEE
Confidence 689999974
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=122.10 Aligned_cols=93 Identities=17% Similarity=0.368 Sum_probs=77.9
Q ss_pred cceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--
Q 010550 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK-- 456 (507)
Q Consensus 382 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~-- 456 (507)
+.|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 ~~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 1 PLGRIQLTIRYSS--------------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CCeEEEEEEEEeC--------------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 3699999999986 245699999999999863 579999999995
Q ss_pred ---CeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC------CCCeeeeEe
Q 010550 457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK------RTGVIGACG 506 (507)
Q Consensus 457 ---~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~------~~~~iG~~~ 506 (507)
..++||++++++.||+|||.|.|.+..... +..|.+.|||+ ++++||++.
T Consensus 49 ~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~ 108 (127)
T cd04030 49 KSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVL 108 (127)
T ss_pred CCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEE
Confidence 346799999999999999999999865433 35899999997 468999975
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=124.12 Aligned_cols=92 Identities=27% Similarity=0.437 Sum_probs=76.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
+|+|.++++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQP--------------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 599999999975 234599999999999863 5799999999853
Q ss_pred e---EEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 D---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+ ++||++++++.||+|||+|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 49 ~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~ 105 (136)
T cd08404 49 KRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLV 105 (136)
T ss_pred ceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEE
Confidence 2 4589999999999999999999875433 23799999998 688999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=119.37 Aligned_cols=76 Identities=26% Similarity=0.362 Sum_probs=63.5
Q ss_pred EEEEEeeeecCCCC--CCCCcEEEEEEcC-------eEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC--
Q 010550 431 LSVLVQGAEDVEGE--NHNNPYAIILYKG-------DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK-- 497 (507)
Q Consensus 431 L~V~v~~a~~L~~~--~~~dPyv~v~~~~-------~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~-- 497 (507)
|+|+|.+|+||+.. +.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+.... ....|.+.|+|+
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~ 81 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF 81 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc
Confidence 89999999999874 6799999999842 2458999999999999999999997532 224799999987
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 82 ~~~dd~IG~~~ 92 (120)
T cd08395 82 ARDDRLVGVTV 92 (120)
T ss_pred cCCCCEEEEEE
Confidence 688999985
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=122.13 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=66.7
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCC----CCCceEEEEEEEC----CC
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEP----PLHEKIHIEVMSK----RT 499 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~----~~~~~L~v~V~d~----~~ 499 (507)
++|+|++|+||+.+ +.+||||+++++++++||++++++.||+|||.|.|.+... .....|.++|||+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999853 5799999999999999999999999999999999999772 1346899999998 58
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 81 ~~iG~~~ 87 (126)
T cd08682 81 KFLGQVS 87 (126)
T ss_pred ceeEEEE
Confidence 9999984
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-14 Score=123.62 Aligned_cols=92 Identities=28% Similarity=0.490 Sum_probs=77.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.| ..|.|.|+|.+|+||+.. +.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~ 48 (136)
T cd08402 1 LGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 48 (136)
T ss_pred CcEEEEEeEEcC--------------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence 489999999997 346799999999999863 5799999999952
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++|++++++.||.|||.|.|.+...... ..|.++|||+ ++++||++.
T Consensus 49 ~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~ 105 (136)
T cd08402 49 KRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVV 105 (136)
T ss_pred cccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEE
Confidence 246899999999999999999998754333 3799999998 678999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=122.84 Aligned_cols=92 Identities=29% Similarity=0.534 Sum_probs=76.6
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~--~ 457 (507)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 ~G~l~~sl~y~~--------------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~ 48 (136)
T cd08405 1 RGELLLSLCYNP--------------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence 499999999997 34679999999999975 3579999999983 2
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++|++++++.||+|||.|.|.+..... +..|.|+|||+ .+++||++.
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~ 105 (136)
T cd08405 49 KRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIY 105 (136)
T ss_pred CccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEE
Confidence 24599999999999999999999864322 34899999998 678999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-14 Score=121.95 Aligned_cols=91 Identities=25% Similarity=0.509 Sum_probs=76.0
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC---
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--- 457 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~--- 457 (507)
|+|.+++.|.+ ..+.|+|+|++|++|+.. +.+||||++++..
T Consensus 1 g~l~~~~~y~~--------------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~ 48 (134)
T cd08403 1 GELMFSLCYLP--------------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR 48 (134)
T ss_pred CeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence 78999999987 356799999999999863 5799999999842
Q ss_pred --eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++|++++++.||.|||.|.|.+...... ..|.++|||+ ++++||++.
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~ 104 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCR 104 (134)
T ss_pred ccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEE
Confidence 256999999999999999999998654332 3799999998 689999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=120.60 Aligned_cols=79 Identities=23% Similarity=0.506 Sum_probs=71.1
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
..|.|+|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+.++ ..+.|.|+|||+ .|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCCCC
Confidence 568999999999999753 5799999999999999999999999999999999999775 357899999998 57
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 92 ~~lG~~~ 98 (136)
T cd08375 92 DFLGRTE 98 (136)
T ss_pred CeeEEEE
Confidence 9999985
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=120.56 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=77.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ....|.|+|++|++|+.. +.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~ 49 (133)
T cd04009 2 YGVLTVKAYYRA--------------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH 49 (133)
T ss_pred ceEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence 699999999875 234699999999999863 5799999999963
Q ss_pred -----eEEEeeeecCCCCCcccceEEEEecCCC---CCceEEEEEEEC----CCCeeeeEe
Q 010550 458 -----DKKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 -----~~~kT~v~~~t~nP~wnE~f~f~v~~~~---~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||+++++|.||+|||.|.|.+...+ .+..|.++|||+ ++++||++.
T Consensus 50 ~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~ 110 (133)
T cd04009 50 LFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAF 110 (133)
T ss_pred cCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEE
Confidence 3569999999999999999999987642 134899999998 589999985
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-14 Score=122.54 Aligned_cols=76 Identities=29% Similarity=0.488 Sum_probs=68.1
Q ss_pred EEEEEeeeecCCCC-----------------CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 431 LSVLVQGAEDVEGE-----------------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 431 L~V~v~~a~~L~~~-----------------~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
|.|+|++|+||+.. +.+||||+|.+++++.||++++++.||+|||+|.|.+..++..+.|.++
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999863 2589999999999999999999999999999999998766556799999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|||+ +|++||++.
T Consensus 82 v~D~d~~~~dd~iG~~~ 98 (151)
T cd04018 82 IRDWDRVGNDDVIGTHF 98 (151)
T ss_pred EEECCCCCCCCEEEEEE
Confidence 9998 789999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-14 Score=110.28 Aligned_cols=85 Identities=36% Similarity=0.603 Sum_probs=76.7
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|+|+|++|++|+..+..+.+||||++++.+.....++|+++.++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998754445799999999999999999999887777789999999999988999
Q ss_pred eEEEE
Q 010550 346 LGMQL 350 (507)
Q Consensus 346 lG~~~ 350 (507)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=118.18 Aligned_cols=79 Identities=20% Similarity=0.474 Sum_probs=65.9
Q ss_pred ceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC
Q 010550 428 AGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~----~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~ 497 (507)
.+.|.|+|.+|+||+. .+.+||||++++.+ .+++|++++++.||+|||+|.|.+..... ...|.|+|||+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 4679999999999974 35799999999842 35699999999999999999999876433 34899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
++++||++.
T Consensus 93 ~~~~~~~~iG~~~ 105 (123)
T cd08521 93 DRFGRNTFLGEVE 105 (123)
T ss_pred CCCcCCceeeEEE
Confidence 678999975
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=117.03 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=75.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--- 456 (507)
.|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 49 (125)
T cd08386 2 LGRIQFSVSYDF--------------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK 49 (125)
T ss_pred ccEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence 599999999976 245699999999999753 579999999993
Q ss_pred CeEEEeeeecCCCCCcccceEEEEecCC-C-CCceEEEEEEEC----CCCeeeeEe
Q 010550 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEP-P-LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~~~kT~v~~~t~nP~wnE~f~f~v~~~-~-~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+.+++|++++++.||+|||.|.|.+... . ....|.++|||+ ++++||+++
T Consensus 50 ~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~ 105 (125)
T cd08386 50 KHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVS 105 (125)
T ss_pred CcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEE
Confidence 3567999999999999999999975322 1 134799999997 678999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=118.15 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=74.7
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|.+++.|.+ ..+.|.|+|++|+||+.. +..||||++.+..
T Consensus 2 ~G~l~~sl~Y~~--------------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDP--------------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 599999999997 245699999999999863 5789999988743
Q ss_pred -eEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 -DKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 -~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++||+++++ .||+|||.|.|. +..... +..|.++|||+ ++++||++.
T Consensus 50 ~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~ 104 (124)
T cd08389 50 KQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKV 104 (124)
T ss_pred cceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEE
Confidence 3569999888 999999999998 654332 34899999998 689999975
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=117.75 Aligned_cols=77 Identities=26% Similarity=0.539 Sum_probs=67.5
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
|.|.|+|.+|+||+.. +.+||||++++++.+++|+++++ +.||+|||.|.|.+..+ ..+.|.|+|||+ ++++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCcc
Confidence 5799999999999863 47999999999998899998765 79999999999999875 357899999998 5789
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 iG~~~ 84 (118)
T cd08681 80 IGDTE 84 (118)
T ss_pred eEEEE
Confidence 99975
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=116.69 Aligned_cols=76 Identities=24% Similarity=0.496 Sum_probs=68.2
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
+++|+|++|+||+.. +.+||||++++++++++|+++++|.||.|||.|.|.+..+ .++.|.|+|||+ .+++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence 478999999999864 5799999999999999999999999999999999999875 357999999998 67999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (116)
T cd08376 80 GRCE 83 (116)
T ss_pred EEEE
Confidence 9985
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=119.93 Aligned_cols=76 Identities=28% Similarity=0.596 Sum_probs=69.4
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|.|.|+|++|+||+.. +.+||||+++++++++||++++++.||+|||.|.|.+.++ ...|.++|||+ +|++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCCEE
Confidence 7899999999999753 5799999999999999999999999999999999999876 57999999998 67999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~a~ 83 (145)
T cd04038 80 GEAE 83 (145)
T ss_pred EEEE
Confidence 9975
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.9e-14 Score=118.66 Aligned_cols=74 Identities=27% Similarity=0.427 Sum_probs=67.6
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
|.|+|++|+||+.. .+||||++++++++.||++++++.||+|||+|.|.+..+ ....|.++|||+ ++++||++.
T Consensus 2 L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG~~~ 78 (121)
T cd08378 2 LYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLGGVC 78 (121)
T ss_pred EEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceeeeEE
Confidence 88999999999987 899999999999889999999999999999999998764 356899999998 589999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-14 Score=161.97 Aligned_cols=122 Identities=21% Similarity=0.362 Sum_probs=103.4
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~ 338 (507)
....|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|+|.+.++. ++.++++|||+|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 456799999999999998 4478999999999997632 58999999999999999999988765 467999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceE---EEEEEEEEe
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP 394 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---i~l~l~~~p 394 (507)
.+++ +.+|.+.|++.++..++....|+++.++ ++..|+ |++++.|.+
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~--------~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPE--------SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcCceeeeeeecCcc--------cccCCCcceEEEEEEecC
Confidence 9855 4999999999999988888888887531 345677 999998865
|
|
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=119.52 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=67.0
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC-
Q 010550 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK- 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~- 497 (507)
.+.|.|+|++|+||+.. +.+||||++++.+ .+++|++++++.||+|||+|.|.+...... ..|.++|||+
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 56799999999999863 5799999999953 246999999999999999999998764333 4899999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
++++||++.
T Consensus 92 ~~~~~~~lG~~~ 103 (133)
T cd08384 92 IGKSNDYIGGLQ 103 (133)
T ss_pred CCCCccEEEEEE
Confidence 679999985
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=116.32 Aligned_cols=91 Identities=22% Similarity=0.385 Sum_probs=75.8
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEEc---
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYK--- 456 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~--- 456 (507)
|+|.+++.|.+ ..+.|.|+|.+|+||+.. +.+||||++++.
T Consensus 1 G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~ 48 (123)
T cd08390 1 GRLWFSVQYDL--------------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE 48 (123)
T ss_pred CEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence 78999998886 345799999999999753 468999999984
Q ss_pred CeEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 457 GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+.++|++++++.||+|||.|.|.+...... ..|.|+|||. ++++||++.
T Consensus 49 ~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~ 103 (123)
T cd08390 49 RRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVL 103 (123)
T ss_pred CCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEE
Confidence 3456999999999999999999998764332 4899999998 679999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=116.62 Aligned_cols=77 Identities=23% Similarity=0.420 Sum_probs=69.5
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
.++|+|+|++|++|... +.+||||++++++++.+|++++++.||+|||.|.|.+.+. +..|.|+|||+ .|++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCCCCCCc
Confidence 46899999999999863 5799999999999999999999999999999999988764 57899999998 6899
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||+++
T Consensus 80 lG~~~ 84 (126)
T cd04046 80 LGQAT 84 (126)
T ss_pred eEEEE
Confidence 99985
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=113.81 Aligned_cols=78 Identities=21% Similarity=0.426 Sum_probs=66.0
Q ss_pred eEEEEEEeeeecCCC---C-CCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC--
Q 010550 429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK-- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~---~-~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~-- 497 (507)
|+|+|+|++|+||+. . +.+||||++++.+ ..++|+++++|.||+|||.|.|.+.... ....|.++|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999985 2 5789999999953 3569999999999999999999886542 235899999998
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
.|++||++.
T Consensus 81 ~~~dd~lG~~~ 91 (111)
T cd04041 81 FTADDRLGRVE 91 (111)
T ss_pred CCCCCcceEEE
Confidence 679999985
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=114.02 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=67.9
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCC---CceEEEEEEEC----CCCe
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSK----RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~---~~~L~v~V~d~----~~~~ 501 (507)
..|+|+|++|+||. .+.+||||++++++++++|++++++.||.|||.|.|.+..+.. +..|.++|||+ ++++
T Consensus 4 ~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 4 FQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred EEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 45899999999999 5789999999999999999999999999999999999866421 35899999998 5799
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 83 iG~~~ 87 (111)
T cd04011 83 IGSFK 87 (111)
T ss_pred cEEEE
Confidence 99975
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=113.64 Aligned_cols=76 Identities=26% Similarity=0.506 Sum_probs=66.6
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeEEEeeeecCCCCCcc-cceEEEEecCCCC-CceEEEEEEEC----CCC
Q 010550 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTKMIRKTRDPAW-NEEFQFMLDEPPL-HEKIHIEVMSK----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~----~~~~dPyv~v~~~~~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~-~~~L~v~V~d~----~~~ 500 (507)
|.|+|++|+||+. .+.+||||+++++++++||++++++.||.| ||.|.|.+..... ++.|.|+|||+ +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999975 246899999999998899999999999999 9999999987543 35899999998 578
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 81 ~iG~~~ 86 (110)
T cd08688 81 AIGKVY 86 (110)
T ss_pred ceEEEE
Confidence 999985
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=114.43 Aligned_cols=77 Identities=25% Similarity=0.561 Sum_probs=68.6
Q ss_pred eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--
Q 010550 429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---------~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-- 497 (507)
|+|.|+|.+|+||+.. +.+||||+++++++.++|++++++.||+|||.|.|.+..+ .++.|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 3689999999999889999999999999999999999765 357999999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 80 ~~~~~iG~~~ 89 (121)
T cd08391 80 DKDDFLGRLS 89 (121)
T ss_pred CCCCcEEEEE
Confidence 678999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.1e-13 Score=115.33 Aligned_cols=77 Identities=25% Similarity=0.437 Sum_probs=68.8
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 429 g~L~V~v~~a~~L~~-----~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
|+|+|+|++|+||+. .+.+||||++.+++++.+|++++++.||.|||.|.|.+..+ .++.|.|+|||+ .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCCCCCC
Confidence 689999999999974 35789999999999999999999999999999999999874 357999999998 67
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 80 ~~lG~~~ 86 (128)
T cd04024 80 DYLGEFD 86 (128)
T ss_pred CcceEEE
Confidence 8999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=117.78 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=66.6
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
.|.|+|.+|+||+.. +.+||||++++++++.+|+++.+ +.||+|||.|+|.+.++ ..+.|.|+|+|+ ++++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCCe
Confidence 388999999999753 58999999999999999999876 69999999999999775 346899999998 5799
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 lG~v~ 84 (150)
T cd04019 80 LGRAV 84 (150)
T ss_pred EEEEE
Confidence 99975
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-13 Score=113.46 Aligned_cols=74 Identities=20% Similarity=0.492 Sum_probs=65.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC-eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|+|+|++|+||+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+..+ ++.|.++|||+ ++++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcce
Confidence 88999999999863 5799999999988 467999999999999999999998764 57899999998 77899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (121)
T cd04042 80 GSAF 83 (121)
T ss_pred EEEE
Confidence 9985
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-13 Score=138.74 Aligned_cols=128 Identities=27% Similarity=0.428 Sum_probs=103.2
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
..-...++++|++|++|..+|..|++||||.+.++..+ ++|+++...+||+|||.|+|.+++ .+..++++|||+|.
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~ 366 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDN 366 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcc
Confidence 34567899999999999999999999999999999665 589999999999999999999987 46789999999884
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 340 ~-----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
. .+|||+|+..|.++.|...-..|+.++ ++.+ ....+|.|++.+...-..++
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgemdvwynle--krtd-----ksavsgairlhisveikgee 429 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLE--KRTD-----KSAVSGAIRLHISVEIKGEE 429 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccchhhhcchh--hccc-----hhhccceEEEEEEEEEcCcc
Confidence 3 478999999999999987655555443 3322 24578888877766554443
|
|
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-13 Score=113.43 Aligned_cols=75 Identities=27% Similarity=0.517 Sum_probs=67.2
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIG 503 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG 503 (507)
|+|+|.+|+||+.. +.+||||++++++.+.+|++++++.||+|||.|.|.+.... ...|.|+|||+ .+++||
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~-~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC-CCEEEEEEEECCCCCCCcEeE
Confidence 89999999999763 46899999999999899999999999999999999998753 56899999998 578999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 81 ~~~ 83 (123)
T cd04025 81 KVV 83 (123)
T ss_pred EEE
Confidence 975
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-13 Score=118.21 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=64.1
Q ss_pred EEEEEeeeecCCCC-CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecC-----------C--CC-CceE
Q 010550 431 LSVLVQGAEDVEGE-NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDE-----------P--PL-HEKI 490 (507)
Q Consensus 431 L~V~v~~a~~L~~~-~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~-----------~--~~-~~~L 490 (507)
|.|+|++|+||+.. +.+||||++++.+ .+++|+++++|.||+|||.|.|.+.. + .. ...|
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 88999999999873 5799999999976 46799999999999999999999951 1 11 2379
Q ss_pred EEEEEEC----CCCeeeeEe
Q 010550 491 HIEVMSK----RTGVIGACG 506 (507)
Q Consensus 491 ~v~V~d~----~~~~iG~~~ 506 (507)
.|+|||+ ++++||++.
T Consensus 82 ~i~V~d~~~~~~ddfLG~v~ 101 (148)
T cd04010 82 RVDLWHASMGGGDVFLGEVR 101 (148)
T ss_pred EEEEEcCCCCCCCceeEEEE
Confidence 9999988 678999985
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-13 Score=115.12 Aligned_cols=76 Identities=28% Similarity=0.500 Sum_probs=66.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCC--CceEEEEEEEC-----CCC
Q 010550 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL--HEKIHIEVMSK-----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~--~~~L~v~V~d~-----~~~ 500 (507)
|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|.|.+..+.. ...|.++|||+ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 8999999999975 3579999999999999999999999999999999999986522 24899999997 478
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 82 ~lG~v~ 87 (127)
T cd04022 82 FLGRVR 87 (127)
T ss_pred eeeEEE
Confidence 999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-13 Score=115.25 Aligned_cols=91 Identities=31% Similarity=0.518 Sum_probs=76.7
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCe--
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGD-- 458 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-- 458 (507)
|+|.+.++|.+ ..+.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~ 48 (134)
T cd00276 1 GELLLSLSYLP--------------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK 48 (134)
T ss_pred CeEEEEEEeeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence 78999999986 245699999999999863 57999999999653
Q ss_pred ---EEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 459 ---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 459 ---~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+++|++++++.||.|||+|.|.+..... ...|.|+|||. .+++||++.
T Consensus 49 ~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~ 104 (134)
T cd00276 49 KLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVV 104 (134)
T ss_pred EeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEE
Confidence 4599999999999999999999876532 35899999997 678999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=109.93 Aligned_cols=71 Identities=28% Similarity=0.543 Sum_probs=60.6
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--------
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-------- 497 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-------- 497 (507)
|.|+|++|+||.+ .+||||++++++ .+.||+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999975 599999999964 24699999999999999999999863 47999999995
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
.|+++|...
T Consensus 76 ~~~~d~~~G~g~ 87 (118)
T cd08686 76 GEGTDAIMGKGQ 87 (118)
T ss_pred ccCcccEEEEEE
Confidence 578887653
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=111.18 Aligned_cols=76 Identities=24% Similarity=0.526 Sum_probs=67.8
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
|.|.|+|++|+||+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+. .+.|.++|||+ ++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCCCCCCce
Confidence 6799999999999863 4789999999999889999999999999999999998653 57899999998 6789
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 79 iG~~~ 83 (119)
T cd08377 79 LGKVA 83 (119)
T ss_pred eeEEE
Confidence 99985
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=111.30 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=64.8
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeee
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIG 503 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG 503 (507)
..|+|+|.+|+||+.++.+||||++++++.+ .+|++ +++.||.|||.|.|.+..+ ..+.+.|.|+|+ ++++||
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCCCCCCCeEE
Confidence 3599999999999998889999999998855 58887 4689999999999987554 235799999997 688999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 82 ~v~ 84 (126)
T cd08400 82 EVT 84 (126)
T ss_pred EEE
Confidence 974
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=112.20 Aligned_cols=74 Identities=23% Similarity=0.417 Sum_probs=64.3
Q ss_pred EEEEEeeeecCCC-CCCCCcEEEEEEcC--eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCeee
Q 010550 431 LSVLVQGAEDVEG-ENHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVIG 503 (507)
Q Consensus 431 L~V~v~~a~~L~~-~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~iG 503 (507)
|.|+|++|+||+. .+.+||||++++++ ++++|+++++|.||+|||.|.|.+... ++.|.|+|||+ ++++||
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN--SKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC--CCEEEEEEEECCCCCCCceEE
Confidence 5799999999975 35799999999974 567999999999999999999998643 56899999998 579999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 79 ~~~ 81 (126)
T cd08678 79 LAI 81 (126)
T ss_pred EEE
Confidence 985
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=110.46 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=64.6
Q ss_pred EEEEEeeeecCCCC----CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCe
Q 010550 431 LSVLVQGAEDVEGE----NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGV 501 (507)
Q Consensus 431 L~V~v~~a~~L~~~----~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~ 501 (507)
|.|+|.+|+||+.. +.+||||+++++++ ..||+++++|.||.|||+|.|.+.+. ...|.+.|||+ .+++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCCCCCCce
Confidence 67899999999863 46899999999876 46999999999999999999999764 36899999998 6789
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 80 iG~~~ 84 (121)
T cd08401 80 IGKVA 84 (121)
T ss_pred EEEEE
Confidence 99874
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=111.67 Aligned_cols=75 Identities=27% Similarity=0.494 Sum_probs=65.3
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
|.|+|++|+||+.. +.+||||++++++ .+++|++++++.||+|||+|.|.+... ..+.|.|+|||+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence 78999999999864 4799999999964 467999999999999999999999775 346899999998 5889
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||++.
T Consensus 81 iG~~~ 85 (119)
T cd04036 81 LGTVL 85 (119)
T ss_pred cEEEE
Confidence 99985
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=111.16 Aligned_cols=78 Identities=31% Similarity=0.509 Sum_probs=67.0
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---
Q 010550 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--- 497 (507)
+.|.|+|++|+||+. .+..||||++.+.+ ..++|++++++.||.|||+|.|.+...+....|.++|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 459999999999985 35799999999963 4679999999999999999999988654456899999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 93 ~~~~~iG~~~ 102 (131)
T cd04026 93 TRNDFMGSLS 102 (131)
T ss_pred CCcceeEEEE
Confidence 678999975
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=112.12 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=65.4
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCC--------CCceEEEEEEEC-
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------LHEKIHIEVMSK- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~--------~~~~L~v~V~d~- 497 (507)
.|+|+|++|++|+.. +.+||||++++++.+++|+++++|.||+|||.|.|.+...+ ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 489999999999763 57999999999999999999999999999999999754321 124699999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 82 ~~~~d~~iG~~~ 93 (135)
T cd04017 82 SVGKDEFLGRSV 93 (135)
T ss_pred CCCCCccceEEE
Confidence 578999985
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=109.24 Aligned_cols=76 Identities=30% Similarity=0.560 Sum_probs=66.9
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
|+|.|+|++|+||+.. +.+||||+++++++ ..+|++++++.||.|||.|.|.+..+ ++.|.|+|||+ .++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 6799999999999863 58999999999874 56999999999999999999998765 47999999998 678
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 79 ~IG~~~ 84 (120)
T cd04045 79 SLGSVE 84 (120)
T ss_pred eeeEEE
Confidence 999985
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=113.03 Aligned_cols=80 Identities=21% Similarity=0.443 Sum_probs=69.1
Q ss_pred CCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----------------------------EEEeeeecCCCCCcc
Q 010550 426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----------------------------KKRTKMIRKTRDPAW 473 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~-----------------------------~~kT~v~~~t~nP~w 473 (507)
+..+.|.|+|++|+||.. .+.+||||++.+... .++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 468899999999999975 357999999998531 258999999999999
Q ss_pred cceEEEEecCCCCCceEEEEEEECCCCeeeeEe
Q 010550 474 NEEFQFMLDEPPLHEKIHIEVMSKRTGVIGACG 506 (507)
Q Consensus 474 nE~f~f~v~~~~~~~~L~v~V~d~~~~~iG~~~ 506 (507)
||.|.|.+... ..+.|.|+|||+++++||++.
T Consensus 105 nE~F~f~v~~~-~~~~L~i~V~D~dd~~IG~v~ 136 (153)
T cd08676 105 NETFRFEVEDV-SNDQLHLDIWDHDDDFLGCVN 136 (153)
T ss_pred ccEEEEEeccC-CCCEEEEEEEecCCCeEEEEE
Confidence 99999999765 357999999999899999985
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=110.20 Aligned_cols=76 Identities=26% Similarity=0.497 Sum_probs=66.3
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--------
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-------- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-------- 497 (507)
+.|+|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+..+ .+.|.|+|||+
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccc
Confidence 3589999999999863 4789999999998889999999999999999999998654 46899999997
Q ss_pred -------CCCeeeeEe
Q 010550 498 -------RTGVIGACG 506 (507)
Q Consensus 498 -------~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 79 ~~~~~~~~~~~iG~~~ 94 (127)
T cd04027 79 KQKFTRESDDFLGQTI 94 (127)
T ss_pred ceeccccCCCcceEEE
Confidence 267999875
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-12 Score=109.71 Aligned_cols=73 Identities=27% Similarity=0.564 Sum_probs=63.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEc-CeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----C--CC
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYK-GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----R--TG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~-~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~--~~ 500 (507)
|+|+|++|+||+.. +.+||||+++++ .+.++|++++++.||.|||.|.|.+.. ++.|.++|||+ + ++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 78999999999864 479999999997 557799999999999999999999964 57999999998 2 47
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 79 ~lG~~~ 84 (123)
T cd08382 79 FLGCVR 84 (123)
T ss_pred eEeEEE
Confidence 999874
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-12 Score=109.59 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=65.9
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeE--EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDK--KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~--~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
+|+|+|++|++|+.. +.+||||+++++++. .||++++++.||.|||.|.|.+..+ .++.|.|+|||+ +++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 378999999999753 579999999998865 4888899999999999999998765 357899999998 679
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 80 ~iG~~~ 85 (124)
T cd04037 80 LIGETV 85 (124)
T ss_pred eeEEEE
Confidence 999985
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=108.25 Aligned_cols=74 Identities=24% Similarity=0.485 Sum_probs=64.9
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|+|+|.+|+||+.. +.+||||++.++++. .||++++++.||.|||.|.|.+... .+.|.++|||+ .+++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCCCCCCCEE
Confidence 78999999999753 579999999998765 5999999999999999999998654 46899999998 67999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (121)
T cd04054 80 GKVS 83 (121)
T ss_pred EEEE
Confidence 9974
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=109.21 Aligned_cols=76 Identities=26% Similarity=0.549 Sum_probs=67.2
Q ss_pred eEEEEEEeeeecCCCC----CCCCcEEEEEEcC--eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----C
Q 010550 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----R 498 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~ 498 (507)
|.|.|+|++|+||+.. +.+||||++++++ +..+|++++++.||.|||.|.|.+.. .++.|.++|||+ +
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCCC
Confidence 6899999999999852 3589999999988 67899999999999999999999883 367999999998 6
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 80 d~~iG~~~ 87 (124)
T cd04044 80 DKLIGTAE 87 (124)
T ss_pred CceeEEEE
Confidence 78999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=113.50 Aligned_cols=77 Identities=25% Similarity=0.488 Sum_probs=66.3
Q ss_pred ceEEEEEEeeeecCCCC---------------------------------CCCCcEEEEEEcCeE-EEeeeecCCCCCcc
Q 010550 428 AGLLSVLVQGAEDVEGE---------------------------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAW 473 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---------------------------------~~~dPyv~v~~~~~~-~kT~v~~~t~nP~w 473 (507)
-|.|.|+|++|++|+.. +.+||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 37899999999999742 347999999999866 49999999999999
Q ss_pred cceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 474 NEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 474 nE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
||.|.|.+..+ .+.|.++|+|+ ++++||++.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~~~~~~IG~~~ 119 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDVVGAQLIGRAY 119 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCCcCCcEEEEEE
Confidence 99999998764 46899999998 678999874
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=107.38 Aligned_cols=92 Identities=22% Similarity=0.368 Sum_probs=74.7
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
.|+|++++.|.+ ..+.|.|+|.+|++|+.. +.+||||++++.+
T Consensus 1 ~G~~~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~ 48 (123)
T cd04035 1 LGTLEFTLLYDP--------------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA 48 (123)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence 389999999987 245699999999999853 4789999999842
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCC-C-CCceEEEEEEEC---CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEP-P-LHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~-~-~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
.+++|++++++.||+|||.|.|..... . .+..|.++|||+ ++++||++.
T Consensus 49 ~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~ 105 (123)
T cd04035 49 SKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETR 105 (123)
T ss_pred CCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEE
Confidence 357999999999999999999963322 1 235899999998 578999875
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-12 Score=109.15 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=66.5
Q ss_pred CceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEEE
Q 010550 427 GAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHI 492 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~-------------~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v 492 (507)
.+|.|+|+|++|+||... +.+||||++.+++++ .+|+++++|.||.|||+|+|.+.+ ...|.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~ 78 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLEL 78 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEE
Confidence 368899999999999753 358999999999876 599999999999999999999963 368999
Q ss_pred EEEEC----CCCeeeeEe
Q 010550 493 EVMSK----RTGVIGACG 506 (507)
Q Consensus 493 ~V~d~----~~~~iG~~~ 506 (507)
+|+|+ .+++||++.
T Consensus 79 ~v~d~~~~~~~~~iG~~~ 96 (132)
T cd04014 79 TVFHDAAIGPDDFVANCT 96 (132)
T ss_pred EEEeCCCCCCCceEEEEE
Confidence 99997 578999874
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=107.54 Aligned_cols=78 Identities=29% Similarity=0.637 Sum_probs=68.0
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCC--CceEEEEEEEC----C
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPL--HEKIHIEVMSK----R 498 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~--~~~L~v~V~d~----~ 498 (507)
|.|.|+|.+|+||+.. +.+||||+++++++.++|+++++ +.||.|||.|.|.+..+.. .+.|.|+|||+ .
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 5799999999999763 47999999999998889999875 9999999999999987632 45899999998 6
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 81 d~~iG~~~ 88 (124)
T cd04049 81 DDFIGEAT 88 (124)
T ss_pred CCeEEEEE
Confidence 88999985
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-12 Score=106.73 Aligned_cols=94 Identities=33% Similarity=0.352 Sum_probs=80.0
Q ss_pred EEEEEEEeccccccC--cCC--CCCcEEEEEEcCccCCceeeeecCCCCC--CeEeeEEEEEeecC--------------
Q 010550 266 LHVKVVRASKLLKKD--FLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP-------------- 325 (507)
Q Consensus 266 L~V~v~~A~~L~~~d--~~g--~~dpyv~v~l~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------- 325 (507)
|+|.|.+|++++..+ ..| .+||||+..+.+....+++|.++++++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966433 356 4999999999886555679999999999 99999999887641
Q ss_pred ---------CCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 010550 326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 326 ---------~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
....|.++|||.|.+++|++||++.++|..+..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 2468999999999999999999999999988765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-12 Score=108.99 Aligned_cols=75 Identities=31% Similarity=0.539 Sum_probs=64.9
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCe-------EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGD-------KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-------~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~-- 497 (507)
.|+|+|++|+||+.. +.+||||++++++. +++|+++++|.||.|||+|.|.+... ...|.++|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 389999999999864 47999999999764 46999999999999999999998653 46899999998
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
.+++||++.
T Consensus 79 ~~~~~~iG~~~ 89 (133)
T cd04033 79 LTRDDFLGQVE 89 (133)
T ss_pred CCCCCeeEEEE
Confidence 679999975
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-12 Score=101.13 Aligned_cols=75 Identities=33% Similarity=0.674 Sum_probs=66.4
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
|.|+|++|+||+. .+.+||||++++++ ..++|++++++.||.|||.|.|.+..++ .+.|.|+|||+ +++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence 7899999999987 35899999999988 6789999999999999999999987764 45699999998 589
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=107.08 Aligned_cols=72 Identities=28% Similarity=0.573 Sum_probs=63.5
Q ss_pred EeeeecCCC-CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCC-CCceEEEEEEEC----CCCeeeeEe
Q 010550 435 VQGAEDVEG-ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP-LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 435 v~~a~~L~~-~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~-~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
|.+|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+..+. ..+.|.++|||+ ++++||++.
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 678999987 467999999999999999999999999999999999997652 356999999998 678999985
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=99.70 Aligned_cols=95 Identities=45% Similarity=0.667 Sum_probs=81.8
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|+|++|++|...+..+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999887765678999999998652223689999999999999999999987657899999999998777899
Q ss_pred eEEEEEECcccCCCC
Q 010550 346 LGMQLVPLKLLTPHE 360 (507)
Q Consensus 346 lG~~~i~l~~l~~~~ 360 (507)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=105.18 Aligned_cols=76 Identities=21% Similarity=0.438 Sum_probs=65.4
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCe---EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
.|.|+|.+|+||+.. +.+||||++.+++. ..||++++++.||.|||+|.|.+... ....|.|+|||+ .+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 588999999999863 57999999998653 46999999999999999999999875 346899999998 67
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 81 ~~iG~~~ 87 (126)
T cd04043 81 DLCGRAS 87 (126)
T ss_pred ceEEEEE
Confidence 8999975
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-12 Score=123.91 Aligned_cols=77 Identities=29% Similarity=0.530 Sum_probs=67.4
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----
Q 010550 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~---~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---- 497 (507)
.|.|+|.+|+||-. +|.+||||++.+-. .++||++++.++||+|||+|+|.+...+.+..|.|+|||+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 49999999999954 57899999999943 2569999999999999999999998776666999999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
++++||+.+
T Consensus 261 RNDFMGslS 269 (683)
T KOG0696|consen 261 RNDFMGSLS 269 (683)
T ss_pred cccccceec
Confidence 889999864
|
|
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=107.63 Aligned_cols=76 Identities=28% Similarity=0.421 Sum_probs=65.9
Q ss_pred EEEEEeeeecCCCC--CCCCcEEEEEEc----CeEEEeeeecCCCCCcccceEEEEecCCC--------------CCceE
Q 010550 431 LSVLVQGAEDVEGE--NHNNPYAIILYK----GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--------------LHEKI 490 (507)
Q Consensus 431 L~V~v~~a~~L~~~--~~~dPyv~v~~~----~~~~kT~v~~~t~nP~wnE~f~f~v~~~~--------------~~~~L 490 (507)
|+|+|++|+||+.+ +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999854 689999999998 66789999999999999999999987752 23489
Q ss_pred EEEEEEC----CCCeeeeEe
Q 010550 491 HIEVMSK----RTGVIGACG 506 (507)
Q Consensus 491 ~v~V~d~----~~~~iG~~~ 506 (507)
.|+|||+ ++++||+++
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~ 100 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVR 100 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEE
Confidence 9999998 689999985
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=105.61 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=65.7
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC-eEEEeeeec-CCCCCcccceEEEEecCCCC---CceEEEEEEEC----C
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG-DKKRTKMIR-KTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSK----R 498 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~-~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~---~~~L~v~V~d~----~ 498 (507)
|+|+|++|++|+.. +.+||||++++++ ++++|++++ ++.||.|||.|.|.+..+.+ ...|.++|||+ .
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~ 81 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG 81 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence 78999999999863 5799999999988 788999975 58999999999999987631 46899999998 5
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 82 ~~~lG~~~ 89 (125)
T cd04051 82 DKLIGEVR 89 (125)
T ss_pred CCcEEEEE
Confidence 78999985
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-12 Score=145.18 Aligned_cols=80 Identities=24% Similarity=0.527 Sum_probs=73.2
Q ss_pred CceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCe
Q 010550 427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGV 501 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~-~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~ 501 (507)
-.|.|.|+|++|+||.++ +++||||++.++++ ++||++++++.||+|||.|+|.+.+|+.+++|+|+|||+ +++.
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~ 2057 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSS 2057 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCC
Confidence 468999999999999975 78999999999965 789999999999999999999999998778999999998 6779
Q ss_pred eeeEe
Q 010550 502 IGACG 506 (507)
Q Consensus 502 iG~~~ 506 (507)
||.+.
T Consensus 2058 ~G~~~ 2062 (2102)
T PLN03200 2058 LGKVT 2062 (2102)
T ss_pred CceEE
Confidence 99875
|
|
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=102.22 Aligned_cols=74 Identities=24% Similarity=0.491 Sum_probs=63.6
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 430 ~L~V~v~~a~~L~~--~~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
.|.|+|.+|+.+.. .+.+||||+++++++ .++|++++++.||+|||.|.|.+.. .+.|.|+|||+ .+++|
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCcEE
Confidence 48999999984433 246999999999988 7899999999999999999999864 37899999998 67899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (125)
T cd04021 80 GEAS 83 (125)
T ss_pred EEEE
Confidence 9975
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=103.47 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=62.5
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------------eEEEeeeecCCCCCcc-cceEEEEecCCCCCceEEEE
Q 010550 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------------DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~--~~~dPyv~v~~~~-------------~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~~L~v~ 493 (507)
+..|++.+|+||+.. +.+||||++++.+ +++||+++++++||+| ||.|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 367889999999742 5899999999952 3579999999999999 9999999853 4789999
Q ss_pred EEEC-C------CCeeeeEe
Q 010550 494 VMSK-R------TGVIGACG 506 (507)
Q Consensus 494 V~d~-~------~~~iG~~~ 506 (507)
|||+ . +++||++.
T Consensus 79 V~D~~~~~~~~~~d~lG~~~ 98 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLS 98 (137)
T ss_pred EEecCCCCCccCCceEEEEE
Confidence 9997 1 68999984
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-11 Score=96.67 Aligned_cols=99 Identities=44% Similarity=0.646 Sum_probs=82.6
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 345 (507)
|.|++++|++|......+..+|||.+.+.+. ...+|+++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 4789999999988666678999999999872 23689999999999999999999976456789999999998877899
Q ss_pred eEEEEEECcccC-CCCceEEEE
Q 010550 346 LGMQLVPLKLLT-PHETKEFTL 366 (507)
Q Consensus 346 lG~~~i~l~~l~-~~~~~~~~~ 366 (507)
+|.+.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999998 444444444
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=101.05 Aligned_cols=75 Identities=27% Similarity=0.432 Sum_probs=63.0
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeee
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGA 504 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~ 504 (507)
|.|+|++|+||+..+.+||||++++++++ ++|+++++ .||.|||+|.|.+...... ..|.+.+||+ ++..+|.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~ 80 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK 80 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEE
Confidence 78999999999987889999999999864 69999999 9999999999999775322 3788888987 4567777
Q ss_pred Ee
Q 010550 505 CG 506 (507)
Q Consensus 505 ~~ 506 (507)
+.
T Consensus 81 v~ 82 (117)
T cd08383 81 VA 82 (117)
T ss_pred EE
Confidence 64
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=100.58 Aligned_cols=75 Identities=27% Similarity=0.519 Sum_probs=64.8
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|+|+|++|++|+.. +.+||||+++++++ .++|+++.++.||.|||.|.|.+... ..+.+.++|||+ .+++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 57899999999863 47899999999765 46999999999999999999999865 356899999998 67899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 G~~~ 83 (115)
T cd04040 80 GSAY 83 (115)
T ss_pred EEEE
Confidence 9985
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-11 Score=104.54 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=59.5
Q ss_pred EEEEEeeeec--CCC---CCCCCcEEEEEE--c---CeEEEeeeecCCCCCcccceEEEEecCCC-------CCceEEEE
Q 010550 431 LSVLVQGAED--VEG---ENHNNPYAIILY--K---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP-------LHEKIHIE 493 (507)
Q Consensus 431 L~V~v~~a~~--L~~---~~~~dPyv~v~~--~---~~~~kT~v~~~t~nP~wnE~f~f~v~~~~-------~~~~L~v~ 493 (507)
..++|..|++ |+. .+.+||||++++ . .++.||+++++|+||+|||.|.|.+.... ....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666766 554 357999999997 2 24679999999999999999999996541 12479999
Q ss_pred EEEC-----CCCeeeeEe
Q 010550 494 VMSK-----RTGVIGACG 506 (507)
Q Consensus 494 V~d~-----~~~~iG~~~ 506 (507)
|||+ +|++||++.
T Consensus 84 V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred EEeCCCcccCCCeeEEEE
Confidence 9998 479999984
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-11 Score=122.15 Aligned_cols=97 Identities=39% Similarity=0.542 Sum_probs=84.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEee--cCCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~--~~~~~~L~v~V 334 (507)
+..+.|.|+|.|++|++|...+..+.+||||++++... +..+++|.+++++.||+|||+|.|.+. ......+.++|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 44567999999999999999999999999999998543 455689999999999999999999886 33356799999
Q ss_pred EEcCCCCCCCeeEEEEEECcc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKL 355 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~ 355 (507)
||+|.++++++||++.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999999887765
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=122.62 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=105.7
Q ss_pred ceEEEEEEEEEeccccccC------------------cCCCCCcEEEEEEcCccCCceeeeecCCC-CCCeEeeEEEEEe
Q 010550 262 PVGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVV 322 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v 322 (507)
-.|.|.|+|.+|++|++.+ ..+.+||||++.+++.++ .||+++.+. .||.|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence 3599999999999998631 125689999999998765 699999874 6999999999999
Q ss_pred ecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCc
Q 010550 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (507)
Q Consensus 323 ~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~ 399 (507)
.... ..+.|.|.|.|.++. .+||.+.+|+.++..++..+.|+++...- .+..+....|+++++|+|...+.
T Consensus 84 ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred ccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccCc
Confidence 8754 689999999998865 59999999999999998888899886431 11223345999999999987653
|
|
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=91.34 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=73.2
Q ss_pred HHHHHhhch-hHH-HHHHHHHHHHHHHHHhh-ccCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEeeeeeEeC
Q 010550 78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDE-YSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG 153 (507)
Q Consensus 78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~l~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~ 153 (507)
|.+++|++- +++ +++.+.+++.++..|++ .+|+| ++++++++++||+.||.|+++|+.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 667777754 444 68899999999999998 56998 99999999999999999999999874 455699999999999
Q ss_pred CCcEEEEEEE
Q 010550 154 NPNIVLVLKL 163 (507)
Q Consensus 154 ~~~i~l~~~~ 163 (507)
+..+.+++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999988765
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=117.45 Aligned_cols=98 Identities=27% Similarity=0.457 Sum_probs=82.3
Q ss_pred eEEEEEEEEEecccccc-----CcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 010550 263 VGILHVKVVRASKLLKK-----DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~-----d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~ 335 (507)
...|.|+|+.|++++.. +.....||||+|.+.|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999987511 223457999999997532 23467888889999999999999999998889999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
|+|..++|+|+|++.+|+..|..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999874
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=95.43 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=57.7
Q ss_pred EEeeeecCCCC---CCCCcEEEEEEcCe------EEEeeeecCCCCCcccceEEEEecCCC---CCceEEEEEEEC----
Q 010550 434 LVQGAEDVEGE---NHNNPYAIILYKGD------KKRTKMIRKTRDPAWNEEFQFMLDEPP---LHEKIHIEVMSK---- 497 (507)
Q Consensus 434 ~v~~a~~L~~~---~~~dPyv~v~~~~~------~~kT~v~~~t~nP~wnE~f~f~v~~~~---~~~~L~v~V~d~---- 497 (507)
..++|++|+.. +.+||||++++.+. .++|++++++.||+|| +|.|.+...+ ....|.|+|||+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34589999864 47999999998653 4699999999999999 6888764322 246899999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
++++||++.
T Consensus 84 ~d~~iG~~~ 92 (110)
T cd04047 84 KHDLIGEFE 92 (110)
T ss_pred CCcEEEEEE
Confidence 679999985
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=96.77 Aligned_cols=76 Identities=20% Similarity=0.431 Sum_probs=63.8
Q ss_pred EEEEEEeeeecCCC-----CCCCCcEEEEEEc------CeEEEeeeecCCC-CCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEG-----ENHNNPYAIILYK------GDKKRTKMIRKTR-DPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~-----~~~~dPyv~v~~~------~~~~kT~v~~~t~-nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
.|+|+|++|+||+. .+..||||++++. ..+++|++++++. ||.|||+|.|.+..+. ...|.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeC
Confidence 58999999999974 3478999999994 3457999988876 9999999999998653 35799999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
++++||++.
T Consensus 82 ~~~~~~~iG~~~ 93 (128)
T cd00275 82 DSGDDDFLGQAC 93 (128)
T ss_pred CCCCCcEeEEEE
Confidence 479999874
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=97.01 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=58.5
Q ss_pred EeeeecCCCC---CCCCcEEEEEEcCeE-------EEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-------
Q 010550 435 VQGAEDVEGE---NHNNPYAIILYKGDK-------KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK------- 497 (507)
Q Consensus 435 v~~a~~L~~~---~~~dPyv~v~~~~~~-------~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~------- 497 (507)
.++|++|+.. +.+||||++++.+.. ++|++++++.||+|||.|.|.+... ..+.|.++|||+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCCC
Confidence 3688999763 579999999997653 6999999999999999999987643 346899999985
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 85 ~~~d~iG~~~ 94 (120)
T cd04048 85 SDHDFLGEAE 94 (120)
T ss_pred CCCcEEEEEE
Confidence 458999985
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-10 Score=96.46 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=62.6
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC--------CCC
Q 010550 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--------RTG 500 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--------~~~ 500 (507)
-|.|.|.+|++|+.+ .+|||.+.+++.+. +|+++.++.||.|+|.|.|.+..+ -..|.|.|+.. +++
T Consensus 12 sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~~~ 87 (146)
T cd04013 12 SLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDKSQ 87 (146)
T ss_pred EEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccCCc
Confidence 499999999999986 48999999999986 999999999999999999976554 36799999744 357
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||.+.
T Consensus 88 ~IG~V~ 93 (146)
T cd04013 88 LIGTVN 93 (146)
T ss_pred EEEEEE
Confidence 999874
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-10 Score=93.33 Aligned_cols=61 Identities=23% Similarity=0.521 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 445 NHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 445 ~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
|.+||||+++++++ .++|++++++.||+|||.|.|.+.++ ..+.|.|+|+|+ ++++||++.
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~ 75 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVS 75 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEE
Confidence 57999999999886 46999999999999999999999875 357899999999 479999974
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=113.48 Aligned_cols=104 Identities=28% Similarity=0.394 Sum_probs=84.3
Q ss_pred eEEEEEEEEEecccccc------CcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 010550 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V 334 (507)
...|.|+|+.|++++.. +.....||||++.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 11233599999998652 22346899999999999999999999988878899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
||+|..+.++++|++.+|+..|..+-. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988889999999999999998852 55553
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-11 Score=121.08 Aligned_cols=133 Identities=29% Similarity=0.521 Sum_probs=104.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc-------------------------cCC---ceeeeecCCCC
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-------------------------KLP---WKKTTVKKKNL 310 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-------------------------~~~---~~~T~v~~~t~ 310 (507)
.+.|.-.+.|.+.+|+||.++|.+|.||||+.+.+.+. ..+ -+-|.++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 44556667888999999999999999999999887321 011 13588999999
Q ss_pred CCeEeeEEEEEeecCCCCeEEEEEEEcCCC---------------------------------C---CCCeeEEEEEECc
Q 010550 311 NPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPLK 354 (507)
Q Consensus 311 nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~---------------------------------~---~d~~lG~~~i~l~ 354 (507)
||+|+|.|.|.+.+..+..+++.+||+|.- + .|||+|...||++
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999999999999999999999843 1 2789999999999
Q ss_pred ccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccC
Q 010550 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (507)
Q Consensus 355 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~ 397 (507)
++... +.+.|+.|..+.+ .++.+|.+++.+......+
T Consensus 269 EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeecc
Confidence 99865 3455665544322 3678999999997765543
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=115.85 Aligned_cols=60 Identities=20% Similarity=0.571 Sum_probs=53.2
Q ss_pred CCCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeEe
Q 010550 445 NHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 445 ~~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
+.+||||+|.+++++. ||++++++.||+|||+|.|.|.++ ...|.++|+|+ ++++||++.
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~ 138 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAK 138 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEE
Confidence 3679999999988654 999999999999999999999986 46899999998 779999874
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=111.58 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=81.6
Q ss_pred eEEEEEEEEEecccccc------CcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 010550 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V 334 (507)
..+|.|+|+.+++++.. +.....||||++.+-+-. ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 122347999999986521 2346888999999999999999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
+|+|...+|+|+|++.+|+..|..+-
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy 573 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI 573 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc
Confidence 99998889999999999999999873
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=83.09 Aligned_cols=75 Identities=35% Similarity=0.678 Sum_probs=65.6
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe---EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 431 L~V~v~~a~~L~~~---~~~dPyv~v~~~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+..+. ...|.|+|||+ ++.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence 67899999999864 36999999999875 689999999999999999999998864 57999999998 378
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
++|.+.
T Consensus 81 ~~G~~~ 86 (101)
T smart00239 81 FIGQVT 86 (101)
T ss_pred eeEEEE
Confidence 999875
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=104.71 Aligned_cols=123 Identities=22% Similarity=0.327 Sum_probs=92.6
Q ss_pred EEEEEEEEEeccccc---c---CcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeE-eeEEEEEeecCCCCeEEEEE
Q 010550 264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 264 g~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~V 334 (507)
..|+|+|++|++|+. . +.....||||++.+.+- ...+++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 11234799999998653 223468999998999999 99999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|+|..+.|+++|++.+|+..|..+-. ..+|... ....-...+|.+++.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~-----~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR-----AGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC-----CCCCCCCeEEEEEEEEcC
Confidence 999988889999999999999987732 2334221 111223467888887776
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-09 Score=88.38 Aligned_cols=76 Identities=25% Similarity=0.370 Sum_probs=63.3
Q ss_pred EEEEEeeeecCCC-----CC--CCCcEEEEEEcC---eEEEeeeecCCCC--CcccceEEEEecCCCC------------
Q 010550 431 LSVLVQGAEDVEG-----EN--HNNPYAIILYKG---DKKRTKMIRKTRD--PAWNEEFQFMLDEPPL------------ 486 (507)
Q Consensus 431 L~V~v~~a~~L~~-----~~--~~dPyv~v~~~~---~~~kT~v~~~t~n--P~wnE~f~f~v~~~~~------------ 486 (507)
|+|.|.+|+|++. .+ .+||||++.+.+ ++++|.+.++++| |.||+.|.|.+..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 8999999999653 23 499999999976 4579999999999 9999999999876432
Q ss_pred ----------CceEEEEEEEC----CCCeeeeEe
Q 010550 487 ----------HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 487 ----------~~~L~v~V~d~----~~~~iG~~~ 506 (507)
...|.++|||. .|++||+++
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~ 115 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLE 115 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEE
Confidence 23899999998 789999985
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.9e-09 Score=107.94 Aligned_cols=98 Identities=24% Similarity=0.374 Sum_probs=80.8
Q ss_pred eEEEEEEEEEecccc----cc--CcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 010550 263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~----~~--d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V 334 (507)
...|.|+|+.+++++ .. +.....||||++.+.+- ...+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 12235799999999642 22346899999999999999999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
||+|..+.|+++|++.+|+..|..+-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 99998888999999999999999873
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=107.12 Aligned_cols=96 Identities=29% Similarity=0.518 Sum_probs=81.1
Q ss_pred EEEEEEEEeccccccC----cCCCCCcEEEEEEcCcc--CCceeee-ecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGEK--LPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d----~~g~~dpyv~v~l~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
+|.|+|+.++++.... ....+||||.+.+-|-. ....+|+ +..++-||.|+|+|+|.+..|+-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999765432 12458999999986532 2345788 667899999999999999999989999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCC
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
|..++|||+|+..+|+..|..+-
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~Gy 719 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGY 719 (746)
T ss_pred CCCCcccccceeeccHHHhhCce
Confidence 99999999999999999999874
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-09 Score=83.64 Aligned_cols=86 Identities=19% Similarity=0.338 Sum_probs=71.0
Q ss_pred EEEEEEEeccccccC---cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 266 L~V~v~~A~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
|.|+|.+|+++...+ ..+.+||||.+.+++.. +.||++ +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 679999999998877 56889999999999764 256765 589999999999994 46789999999863 34
Q ss_pred CCeeEEEEEECcccCCC
Q 010550 343 HDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~ 359 (507)
.-.+|..-+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 55799999999988754
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-09 Score=108.08 Aligned_cols=80 Identities=21% Similarity=0.454 Sum_probs=71.2
Q ss_pred cCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---
Q 010550 424 ALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--- 497 (507)
Q Consensus 424 ~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--- 497 (507)
.+.-++.+.++|.+|++|.++ |.+||||.+.++..+++|+++...+||+|||.|.|.+.+. .+.|.+.|||.
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded~d 367 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDEDND 367 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCccc
Confidence 444677899999999999764 6899999999999999999999999999999999999886 58999999997
Q ss_pred ------------CCCeeeeE
Q 010550 498 ------------RTGVIGAC 505 (507)
Q Consensus 498 ------------~~~~iG~~ 505 (507)
+|+|+|+.
T Consensus 368 lksklrqkl~resddflgqt 387 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQT 387 (1283)
T ss_pred HHHHHHHHhhhcccccccce
Confidence 67888874
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-08 Score=79.73 Aligned_cols=75 Identities=29% Similarity=0.602 Sum_probs=64.9
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCCee
Q 010550 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTGVI 502 (507)
Q Consensus 431 L~V~v~~a~~L~~---~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~~i 502 (507)
|.|.|++|++|.. .+..||||.+++.+ ...+|+++.++.||.|||.|.|.+... ....|.++|+|+ .+++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 4689999999975 35799999999998 778999999999999999999999874 357899999998 36899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 80 g~~~ 83 (102)
T cd00030 80 GEVE 83 (102)
T ss_pred EEEE
Confidence 9874
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-09 Score=110.28 Aligned_cols=100 Identities=29% Similarity=0.442 Sum_probs=86.7
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc----CCceeeeecCCCCCCeEeeEEEEEeecC----CCCeE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L 330 (507)
.......|.|.|+.|+++.+-|.+|.|||||+|.+.+.. ....+|+|+..|+||+|+|+|+|.|... +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 444556788999999999999999999999999998753 2356899999999999999999999732 25689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCC
Q 010550 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (507)
Q Consensus 331 ~v~V~d~~~~~~d~~lG~~~i~l~~l~~ 358 (507)
.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999998863
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-08 Score=77.47 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=52.4
Q ss_pred EEEEEeeeecCCC------CCCCCcEEEEEEcCe-EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 431 LSVLVQGAEDVEG------ENHNNPYAIILYKGD-KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 431 L~V~v~~a~~L~~------~~~~dPyv~v~~~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
|.|+|++|+|+.. .+.+||||.+.+++. +.+|++ +.||.|||.|.|.+.. ...+.+.|||+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeC
Confidence 5789999999964 257899999999998 558887 4999999999999953 47899999999
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=96.15 Aligned_cols=166 Identities=21% Similarity=0.303 Sum_probs=115.8
Q ss_pred eeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----CCCCeeEEEEEECcccCCCCceEEEEeccccccCCC
Q 010550 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376 (507)
Q Consensus 301 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~----~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~ 376 (507)
.+|.++.+.+||.|.+.|.+...-...|.++++++|.+.. ...+|+|++...+..+.........+.+..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 4889999999999999998887766789999999998743 456899999999998876533322222111
Q ss_pred CCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEE
Q 010550 377 PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAII 453 (507)
Q Consensus 377 ~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v 453 (507)
......|+|.+.+.-... .-....-.++|++|..+ ..+|||..+
T Consensus 117 -~~~~~~g~iti~aee~~~--------------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~ 163 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDES--------------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEF 163 (529)
T ss_pred -CccCCcccEEEEeecccc--------------------------------cCceeeeeeeeeecCcccccccCCcceEE
Confidence 123456777777621110 00122233468888875 479999998
Q ss_pred EEc--Ce----EEEeeeecCCCCCcccceEEEEecCCCC---CceEEEEEEEC----CCCeeeeEe
Q 010550 454 LYK--GD----KKRTKMIRKTRDPAWNEEFQFMLDEPPL---HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 454 ~~~--~~----~~kT~v~~~t~nP~wnE~f~f~v~~~~~---~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+-. .. .++|.++++++||.|.+ |.......+. +.++.+++||. ++++||+++
T Consensus 164 ~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~ 228 (529)
T KOG1327|consen 164 YKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQ 228 (529)
T ss_pred EEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEec
Confidence 864 22 24999999999999988 5544443322 34899999998 558999985
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-08 Score=102.15 Aligned_cols=127 Identities=25% Similarity=0.384 Sum_probs=95.9
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC---CceeeeecCCCCCCeEe-eEEEEEeecCCCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
-.|.|.|+.|++|+... .|...|||.|.+-|..+ ..++|.+..+++||+|| |.|+|.+.+|+-..|+|.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999543 35567999999866432 23567788899999999 999999999999999999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCc
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~ 399 (507)
++...|||++.+|+..+..+- ...+|..... ..-.-..+.+.+...|..+.+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~yS-----EdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYS-----EDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCch-----hhhhhhhheeeeEeccccCcc
Confidence 998889999999999998662 1222211100 112345677888888876553
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-08 Score=102.56 Aligned_cols=124 Identities=27% Similarity=0.369 Sum_probs=95.3
Q ss_pred EEEeccccccCcCCCCCcEEEEEEcCc-cCCceeeeecCCCCCCeEeeEEEEEeecC---------------CCCeEEEE
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQILQLQ 333 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~L~v~ 333 (507)
+++++++-+.+ ++.+|||+++...+. +...++|+++++|.+|.|+|.|+|.+... ..-.++++
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 34444554443 566999999998654 33346899999999999999999998754 24478899
Q ss_pred EEE-cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 334 VFD-WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 334 V~d-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+|+ .+....++|+|++.+++..+........|+.|...-+.++...+..-|.+++.++|..
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999 5555668999999999999987667778888877655555555667899999999874
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=100.04 Aligned_cols=123 Identities=15% Similarity=0.239 Sum_probs=92.9
Q ss_pred CceEEEEEEEEEecccccc----CcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 010550 261 KPVGILHVKVVRASKLLKK----DFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~ 335 (507)
.-.|.|.++|.+|+-+... +.. ...||||++.+++.++ .|| .+..||.|+|+|.+.+.......+.|+|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3469999999999843321 111 1239999999997765 466 55669999999999998766467999998
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
| ...+||.+.+|+.++..++. .+.|+++...- .+.... ..|++++.|.|...+
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~----~~p~~~-~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN----GKPNPE-LKLRFMLWFRPAELE 135 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC----CCCCCC-CEEEEEEEEEEhhhC
Confidence 8 25799999999999998865 78899885431 111112 599999999998876
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.1e-07 Score=95.17 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=64.1
Q ss_pred CceEEEEEEeeeecCCC--------CCCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--------~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
....|.|+|+.|+.++. ...+||||+|.+.|. +++|++..++.||+|||+|+|.+..|++ .-|.++
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL-AlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL-ALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc-eEEEEE
Confidence 34679999999998741 125799999999762 4578887889999999999999988743 689999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ +++++|+..
T Consensus 486 V~D~D~~~~ddfiGQ~~ 502 (537)
T PLN02223 486 VYDYEVSTADAFCGQTC 502 (537)
T ss_pred EEecCCCCCCcEEEEEe
Confidence 9996 688999863
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-07 Score=92.85 Aligned_cols=119 Identities=28% Similarity=0.405 Sum_probs=95.4
Q ss_pred EEEEEEEEEeccccccCcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEe-eEEEEEeecC--CCCeEEEEEEEcCC
Q 010550 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK 339 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~V~d~~~ 339 (507)
|.|.|+|..|++|+-+|.. ...|.||.+.+.+.. ++|.+..+++||.|| +-|.|.+.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t---~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT---FKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccc---eehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7789999999999998864 457999999999766 489999999999999 6788998753 36789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC----------ceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 340 VGGHDRLGMQLVPLKLLTPHE----------TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~----------~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.+.+|-||.+.|+++.|.-.+ -..-|+++...+. ..+|+|.+-+..
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-------girgeinvivkv 135 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-------GIRGEINVIVKV 135 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-------cccceeEEEEEE
Confidence 999999999999999886321 2346777765432 356777766543
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-07 Score=100.81 Aligned_cols=225 Identities=16% Similarity=0.202 Sum_probs=139.3
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec---------CCCCeEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---------PESQILQLQ 333 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---------~~~~~L~v~ 333 (507)
.-.+++.+.+|+.|...|..+.+|||+.+.+-++. +.|.++.+|+||.|+++..|.-.+ ..-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs---~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQS---KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhccccc---ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 34577888999999999999999999999988765 589999999999999998875221 113578899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC-cccccccccccccC
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED-SIKFSSVSKKYSRK 412 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~-~~~~~~~~~~~~~~ 412 (507)
+||.++.+.++++|++.....-... .+...|.+..+. ....|.+.++......... ..+.... .
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg--------~~l~gd~l~a~eliq~~~~i~~p~~~~------~ 346 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRG--------AFLDGDVLIAAELIQIGKPIPQPPPQR------E 346 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeecc--------cccccchhHHHHHHhhcCCCCCCCccc------c
Confidence 9999999999999997654433332 334445555432 3344554443321111000 0000000 0
Q ss_pred CCCCCCCCCccc--CCCceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEEEeeeecC-CCCCcccceEEEEecCCCC
Q 010550 413 GSGNDQSSDEEA--LSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKMIRK-TRDPAWNEEFQFMLDEPPL 486 (507)
Q Consensus 413 ~~~~~~~~~~~~--~~~~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~ 486 (507)
..... -|... -...+.+.|--..-+|+.. .....|-+-+.++++..+|-++.. -.||.++..|.+..-..+.
T Consensus 347 ~~~~~--vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd 424 (1105)
T KOG1326|consen 347 IIFSL--VPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPD 424 (1105)
T ss_pred cceec--cccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccc
Confidence 00000 01110 0122333333333344432 236789999999999888877654 7899999877665433322
Q ss_pred ----CceEEEEEEEC----CCCeeeeEeC
Q 010550 487 ----HEKIHIEVMSK----RTGVIGACGN 507 (507)
Q Consensus 487 ----~~~L~v~V~d~----~~~~iG~~~~ 507 (507)
...+.++|.|. .....|+|.+
T Consensus 425 ~e~Y~ppl~akvvd~~~fg~~~v~g~c~i 453 (1105)
T KOG1326|consen 425 EELYMPPLNAKVVDLRQFGRMEVVGQCKI 453 (1105)
T ss_pred hHhhCccceeEEEecccccceeehhhhcc
Confidence 23899999987 5567777753
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-07 Score=100.11 Aligned_cols=91 Identities=29% Similarity=0.400 Sum_probs=81.9
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 344 (507)
.++|.+++|.+|...|.+|.+|||+++.++++.. ..+...+.+|+||+|.+.|++....+....+.++|||+|..+.|+
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~ 692 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE 692 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence 5679999999999999999999999999997654 246778899999999999999988888889999999999999999
Q ss_pred eeEEEEEECccc
Q 010550 345 RLGMQLVPLKLL 356 (507)
Q Consensus 345 ~lG~~~i~l~~l 356 (507)
.+|+..++|+.-
T Consensus 693 ~iget~iDLEnR 704 (1105)
T KOG1326|consen 693 KIGETTIDLENR 704 (1105)
T ss_pred hhhceehhhhhc
Confidence 999999998754
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=91.01 Aligned_cols=78 Identities=24% Similarity=0.297 Sum_probs=64.3
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~------~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
...|.|+|+.|++++. + ...||||+|.+-| .+++|++..++.||+|||+|+|.+..|++ .-|.++
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL-AllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL-ALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce-eEEEEE
Confidence 4679999999998641 1 2479999999965 24689998999999999999999988743 689999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ +++++|+..
T Consensus 547 V~d~d~~~~ddfiGQ~~ 563 (598)
T PLN02230 547 VHEHDINEKDDFGGQTC 563 (598)
T ss_pred EEECCCCCCCCEEEEEE
Confidence 9996 688999863
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=90.10 Aligned_cols=78 Identities=32% Similarity=0.413 Sum_probs=63.8
Q ss_pred ceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 428 AGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~--~-------~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
...|.|+|+.|++++. . ...||||+|.+-| .+++|+++.++.||+|||+|.|.+..+++ .-+.++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEE
Confidence 4679999999988742 1 1359999999965 35699999999999999999999988743 579999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ .++++|+..
T Consensus 548 V~D~D~~~~ddfiGq~~ 564 (599)
T PLN02952 548 VREYDMSEKDDFGGQTC 564 (599)
T ss_pred EEecCCCCCCCeEEEEE
Confidence 9996 688999863
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-06 Score=89.50 Aligned_cols=78 Identities=26% Similarity=0.316 Sum_probs=63.7
Q ss_pred ceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEE
Q 010550 428 AGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIE 493 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~----~-----~~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~ 493 (507)
...|.|+|+.|++++ . ....||||+|.+.| .+++|+++.++.||+|||.|+|.+..|++ .-|.+.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL-AllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL-ALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce-eEEEEE
Confidence 467999999998753 1 12579999999964 35699999999999999999999988743 689999
Q ss_pred EEEC----CCCeeeeEe
Q 010550 494 VMSK----RTGVIGACG 506 (507)
Q Consensus 494 V~d~----~~~~iG~~~ 506 (507)
|+|+ .++++|+..
T Consensus 530 V~d~D~~~~ddfigq~~ 546 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTC 546 (581)
T ss_pred EEECCCCCCCcEEEEEE
Confidence 9995 688999864
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-07 Score=99.03 Aligned_cols=107 Identities=26% Similarity=0.213 Sum_probs=87.6
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEE---eecCCCCeEEEEEEE
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV---VKEPESQILQLQVFD 336 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~V~d 336 (507)
..|+|.|-|..|++|+--.-+..+||||+.++.+. +..++||+++++|.||+|||...+. ......++|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 46899999999999966544567999999999764 4456799999999999999987765 222345789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
.+....+.++|.+.++|.++...+....|+.+
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99988999999999999998877665567665
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=94.06 Aligned_cols=79 Identities=27% Similarity=0.529 Sum_probs=63.0
Q ss_pred ceEEEEEEeeeecCC---CCCCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEE-ecCCCCC-ceEEEEEEEC
Q 010550 428 AGLLSVLVQGAEDVE---GENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFM-LDEPPLH-EKIHIEVMSK 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~---~~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~-v~~~~~~-~~L~v~V~d~ 497 (507)
.|.|.|.|+.|++|+ +...+||||+.++... ++||+++++|.||.|||.+.|. .+...+. ..|+++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 356999999999994 3357999999999642 4699999999999999999987 3333223 3899999988
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
.+.++|.+.
T Consensus 1603 ~~~~en~~lg~v~ 1615 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVN 1615 (1639)
T ss_pred cceeeeeeeeeee
Confidence 778888763
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=82.47 Aligned_cols=98 Identities=34% Similarity=0.369 Sum_probs=80.7
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 333 (507)
++.....-|.|++++|.+|..+|.+|.+||||..++.+. ..-+++|.+.++|.||.||+.|.+.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 455567789999999999999999999999999998753 2335789999999999999999988753 346789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcc
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKL 355 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~ 355 (507)
|||++..+..+++|-+......
T Consensus 307 vgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred ecccCCCcCccCCCcccccccc
Confidence 9999988788899887654433
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.7e-06 Score=88.08 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=65.4
Q ss_pred ceEEEEEEeeeecCCC---------------------CCCCCcEEEEEEcCeEE-EeeeecCC-CCCcccceEEEEecCC
Q 010550 428 AGLLSVLVQGAEDVEG---------------------ENHNNPYAIILYKGDKK-RTKMIRKT-RDPAWNEEFQFMLDEP 484 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---------------------~~~~dPyv~v~~~~~~~-kT~v~~~t-~nP~wnE~f~f~v~~~ 484 (507)
-|.|.++|++|++|+. ++.+||||.|.+++.+. +|+++.+. .||+|||.|...|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3679999999998873 24679999999998876 99999884 6999999999999886
Q ss_pred CCCceEEEEEEEC---CCCeeeeEe
Q 010550 485 PLHEKIHIEVMSK---RTGVIGACG 506 (507)
Q Consensus 485 ~~~~~L~v~V~d~---~~~~iG~~~ 506 (507)
...+.+.|+|. +..+||.+.
T Consensus 87 --~~~v~f~vkd~~~~g~~~ig~~~ 109 (808)
T PLN02270 87 --ASNIIFTVKDDNPIGATLIGRAY 109 (808)
T ss_pred --cceEEEEEecCCccCceEEEEEE
Confidence 47899999998 778999763
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=83.51 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=63.4
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcC-----eEEEeeeecCCCCCcc-cceEEEEecCCCCCceEEE
Q 010550 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKG-----DKKRTKMIRKTRDPAW-NEEFQFMLDEPPLHEKIHI 492 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~------~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~~L~v 492 (507)
...|.|+|++|++|+. . ...||||+|.+.| .+++|++++++.||+| ||+|+|.+..+++ .-|.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEE
Confidence 4579999999998731 1 2489999999864 2459999988899999 9999999988754 68999
Q ss_pred EEEEC----CCCeeeeEe
Q 010550 493 EVMSK----RTGVIGACG 506 (507)
Q Consensus 493 ~V~d~----~~~~iG~~~ 506 (507)
.|+|+ .++++|+..
T Consensus 509 ~V~D~d~~~~d~figq~~ 526 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTC 526 (567)
T ss_pred EEEeCCCCCCCCEEEEEE
Confidence 99996 678999864
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=84.40 Aligned_cols=76 Identities=25% Similarity=0.440 Sum_probs=63.6
Q ss_pred EEEEEEeeeecCCCC-------CCCCcEEEEEEcCe-----EEEee-eecCCCCCcccceEEEEecCCCCCceEEEEEEE
Q 010550 430 LLSVLVQGAEDVEGE-------NHNNPYAIILYKGD-----KKRTK-MIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~-------~~~dPyv~v~~~~~-----~~kT~-v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d 496 (507)
.|.|.|.++++++.. ..+||||.|.+-|. +.+|+ +..++-||.|+|+|+|.+..|++ .-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 799999999976531 36899999998763 45999 55679999999999999999854 789999999
Q ss_pred C----CCCeeeeEe
Q 010550 497 K----RTGVIGACG 506 (507)
Q Consensus 497 ~----~~~~iG~~~ 506 (507)
+ +|+|+|+..
T Consensus 696 ~d~~~~ddF~GQ~t 709 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTT 709 (746)
T ss_pred cCCCCcccccceee
Confidence 8 699999864
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.7e-06 Score=83.25 Aligned_cols=79 Identities=23% Similarity=0.473 Sum_probs=68.7
Q ss_pred ceEEEEEEeeeecCCCC----CCCCcEEEEEEcCeEEEeeeecCCCCCcccc-eEEEEecCCCCC-ceEEEEEEEC----
Q 010550 428 AGLLSVLVQGAEDVEGE----NHNNPYAIILYKGDKKRTKMIRKTRDPAWNE-EFQFMLDEPPLH-EKIHIEVMSK---- 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE-~f~f~v~~~~~~-~~L~v~V~d~---- 497 (507)
.|.|.|.|..||+||-. ...|.||++.+++.+.||.|..+++||.||. =|.|.+.+.++. ++|+|.++|+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 36789999999999853 4689999999999999999999999999995 699999887664 4999999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
.++-||.+.
T Consensus 82 andaigkv~ 90 (1169)
T KOG1031|consen 82 ANDAIGKVN 90 (1169)
T ss_pred cccccceee
Confidence 788888763
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.8e-06 Score=63.85 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=67.0
Q ss_pred EEEEEEeccccccCcCC-CCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCCCCC
Q 010550 267 HVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 267 ~V~v~~A~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~d~~~~~~d 343 (507)
-|++++|++|.-....| .+.-|++--+.-.+.-..||+++++..||+|+|+|.|.+.. ..+-.|-|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47889999987654333 34456655443222223689999999999999999998763 345678899988 45677
Q ss_pred CeeEEEEEECcccCCC
Q 010550 344 DRLGMQLVPLKLLTPH 359 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~ 359 (507)
+.||.|.+.++++.++
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999998765
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.7e-05 Score=80.01 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=62.5
Q ss_pred eEEEEEEeeeecCCCC--CCCCcEEEEEEcC------eEEEeeeecCCCCCccc-ceEEEEecCCCCCceEEEEEEEC--
Q 010550 429 GLLSVLVQGAEDVEGE--NHNNPYAIILYKG------DKKRTKMIRKTRDPAWN-EEFQFMLDEPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wn-E~f~f~v~~~~~~~~L~v~V~d~-- 497 (507)
-.|.|.|..||.|+.+ +...|||.|.+-| +.+.|.|+.+.+||+|| |.|+|.|.+|+. .-|.+.|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~-A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF-AFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce-EEEEEEEecccc
Confidence 3588999999999864 4566999999965 23455667789999999 999999999843 6899999998
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
...|||++.
T Consensus 1144 fs~~~FiaqA~ 1154 (1267)
T KOG1264|consen 1144 FSDPNFLAQAT 1154 (1267)
T ss_pred cCCcceeeeee
Confidence 456999874
|
|
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=75.80 Aligned_cols=226 Identities=18% Similarity=0.265 Sum_probs=146.0
Q ss_pred CCCCceeCCCC-------cchHHHHHHHHhhchh------HHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCC
Q 010550 61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPY------LDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLP 127 (507)
Q Consensus 61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~------~~~~~~~~i~~~~~~~l~~~~p~~~l~~i~~~~~~lG~~~ 127 (507)
+.|.|+..... -.|-.+|.++..+..- .+.++-+.....++.++....-+--++.+++.++-+|.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 58888876432 2455667777777652 2233333334444444544332223899999999999999
Q ss_pred CeEeeEEEEecC------------C-------------CeEEEeeeeeEeCCCcEEEEEEE-eeeEEEEEEEEEEEEEEE
Q 010550 128 PTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKL-LSFRITVQLVDLQIFAAP 181 (507)
Q Consensus 128 P~i~~ir~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~ 181 (507)
|.+++.+++.-+ + ..+.+=.++.|.|+.--++++.. .+.+..+.++-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998610 1 12345568899998777777654 233333444456999999
Q ss_pred EEEEecCCCCCCceeEEEEEcCCCceEEEEEEE--cCcccccCcchHHHHHHHHHHHhhhcccCCccc-------eeccc
Q 010550 182 RITLKPLVPTFPCFATMVVSLMERPHVDFGIKI--LGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTY-------EIPIL 252 (507)
Q Consensus 182 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~--~g~~i~~ip~l~~~~~~~i~~~l~~~~v~P~~~-------~~~l~ 252 (507)
|+.+. ..|+ .+|+++|.+.|.+..+++. .|..+-+ -+.+.|...|+..+.+...||++- .-|+-
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99986 4455 8999999999987554442 2222111 234567777888888889999842 11111
Q ss_pred cccc----ccccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC
Q 010550 253 DASS----VAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG 295 (507)
Q Consensus 253 ~~~~----~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~ 295 (507)
.... ...-.+.|.+.|++.++..|... ++...-||.+.+..
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 1111 01234679999999999888654 57888999998854
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.1e-05 Score=82.15 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=75.9
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~ 338 (507)
.+.-.|+..+++++|+ ++ ..|+|..+-.-+.+. .||.+.++|.||+||+...|.+...+....++.|||.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~--f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT--FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN 119 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEeccee--eeeccccccCCcccchhhceEeccCCcceEEEEEEecC
Confidence 4566799999999997 33 358876654443432 69999999999999999999998766667899999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHE 360 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~ 360 (507)
.+++++++|.|.+++.++...+
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCCHHHhhhheeecHhhccHHH
Confidence 9999999999999888776543
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.1e-05 Score=76.49 Aligned_cols=88 Identities=32% Similarity=0.558 Sum_probs=70.6
Q ss_pred EEEeccccccCcCCCCCcEEEEEEc---CccCCceeeeecCCCCCCeEeeEEEEEeecC----CCCeEEEEEEEcCCCCC
Q 010550 270 VVRASKLLKKDFLGTSDPYVKLSLT---GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQILQLQVFDWDKVGG 342 (507)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v~V~d~~~~~~ 342 (507)
..+|++|..+|..+++|||..++-. +.....++|.+.++++||.|.+ |.+..... ....+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 2233457899999999999996 44444322 24678899999999999
Q ss_pred CCeeEEEEEECcccCC
Q 010550 343 HDRLGMQLVPLKLLTP 358 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~ 358 (507)
++++|++..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999999874
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.7e-05 Score=58.08 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=57.0
Q ss_pred EEEeeeecCC--CCC--CCCcEEEEEE--cC-eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC--CCCee
Q 010550 433 VLVQGAEDVE--GEN--HNNPYAIILY--KG-DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK--RTGVI 502 (507)
Q Consensus 433 V~v~~a~~L~--~~~--~~dPyv~v~~--~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~--~~~~i 502 (507)
++|.+|+||. ... .+.-|++-.+ .. ...||++...+.||+|+|+|.|.+..-.+.+ .|.++|+.. +++.|
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~i 82 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRTI 82 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCcccee
Confidence 6788999984 222 3444666444 22 2359999999999999999999988766655 899999998 88999
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|.|.
T Consensus 83 G~~s 86 (103)
T cd08684 83 GECS 86 (103)
T ss_pred eEEE
Confidence 9985
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00014 Score=60.70 Aligned_cols=94 Identities=26% Similarity=0.344 Sum_probs=68.5
Q ss_pred EEEEEEEeccccccCc-------------CCCCCcEEEEEEcC-ccCCceeeeecCCCCCCeEeeEEEEEee--------
Q 010550 266 LHVKVVRASKLLKKDF-------------LGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVK-------- 323 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~-------------~g~~dpyv~v~l~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~-------- 323 (507)
|.|.|++|.+|+.... .-.-++||++.+.- .....++|+++-++-.|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889999875321 01248999999643 1223468999999999999999999875
Q ss_pred c-------CCCCeEEEEEEEcCCC----------CCCCeeEEEEEECcccCCC
Q 010550 324 E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 324 ~-------~~~~~L~v~V~d~~~~----------~~d~~lG~~~i~l~~l~~~ 359 (507)
+ .+...+.++||+.+.. .+|-+||.+.||+.+|...
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1256899999997632 2445899999999998754
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=9.2e-05 Score=72.41 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=85.6
Q ss_pred CceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE-E
Q 010550 261 KPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-D 336 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~-d 336 (507)
..+|.+.|.+++|++|..+... ..++|||+|++.+. ...+.+|+...+|.+|.+.+...|.- .+....|.+.|| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence 4579999999999999876433 25899999998654 34567899999999998887666654 345678999999 4
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC-ceEEEEeccc
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLK 370 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~~ 370 (507)
+.++..+.|+|.+.+-+.+|.... ....|+++..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 666777789999999999998765 6677887754
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0012 Score=71.05 Aligned_cols=76 Identities=21% Similarity=0.433 Sum_probs=59.8
Q ss_pred CCceEEEEEEeeeecCCCCCCCCcEEE-EEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 426 SGAGLLSVLVQGAEDVEGENHNNPYAI-ILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~~~~dPyv~-v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
.-+|++.+++.+|+ + +..|||.. +++|.+..||.+.++|.||+|||.-.|.+..... ...+++|||. .++
T Consensus 51 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 51 DFSGIALLTLVGAE-M---KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGP-HLARISVFETNRLSKNT 125 (644)
T ss_pred cccCeEEEEeehhh-h---ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCc-ceEEEEEEecCCCCHHH
Confidence 36789999999987 2 34688655 6677788999999999999999999999987643 3569999998 456
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
++|-|+
T Consensus 126 lv~~~e 131 (644)
T PLN02964 126 LVGYCE 131 (644)
T ss_pred hhhhee
Confidence 665543
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.09 Score=52.56 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=137.3
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec-------CCCCeEEEEEEEcC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-------PESQILQLQVFDWD 338 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-------~~~~~L~v~V~d~~ 338 (507)
+.|+|+++++.+... ...-.+..++++... .|..+..+..|.||......+.. .....+++++|-.|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998762 345678888888765 67778889999999888877642 23678999999988
Q ss_pred -CCCCCCeeEEEEEECccc---CCC--CceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCccccc--cccc-cc
Q 010550 339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFS--SVSK-KY 409 (507)
Q Consensus 339 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~--~~~~-~~ 409 (507)
..+..+.+|.+.++|+.. ..+ .....|++|....+ +-.+.+-+|.+.+............. ...+ ..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 456778999999999998 544 45567887754311 11234567777776655433211100 0000 00
Q ss_pred ccCCC-------CCC--------------CCCCcccCCCceEEEEEEeeeecCCC--------C-CCCCcEEEEEEcCeE
Q 010550 410 SRKGS-------GND--------------QSSDEEALSGAGLLSVLVQGAEDVEG--------E-NHNNPYAIILYKGDK 459 (507)
Q Consensus 410 ~~~~~-------~~~--------------~~~~~~~~~~~g~L~V~v~~a~~L~~--------~-~~~dPyv~v~~~~~~ 459 (507)
.+.+. ... +-.|.......=+|.|++..|+||.. + +...-|...++-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 00000 000 00000111122357888888988743 1 224556667777877
Q ss_pred EEeeeecCCCCCccc--ceEEEEecCCC--------CCceEEEEEEECCCCeeeeEe
Q 010550 460 KRTKMIRKTRDPAWN--EEFQFMLDEPP--------LHEKIHIEVMSKRTGVIGACG 506 (507)
Q Consensus 460 ~kT~v~~~t~nP~wn--E~f~f~v~~~~--------~~~~L~v~V~d~~~~~iG~~~ 506 (507)
..|..-+...+|.|. +..-+.+.-.. ....|.|-++- ++..||.+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-g~~~Lg~~~ 287 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-GNQSLGSTS 287 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-CCcEEEEEE
Confidence 888888888888765 22224443221 11245555554 456677653
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0016 Score=64.61 Aligned_cols=126 Identities=20% Similarity=0.189 Sum_probs=90.9
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEc--CccCCceeeeecCCCCCCeEeeEEEEEeecC-----------CCC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-----------ESQ 328 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-----------~~~ 328 (507)
....|.+.|+++.+++........|.|+++.+. +....+.+|.++++|.+|.|+|.|.+.+... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345667777788777654322335778887763 2222345899999999999999999988641 134
Q ss_pred eEEEEEEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 329 ILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 329 ~L~v~V~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
.+.|++|++..+ ++|.++|.+.+.|..|.........+++... .....|.+.+++...-
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEec
Confidence 689999998754 6788999999999999877666777776432 2456788888887653
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.067 Score=47.52 Aligned_cols=90 Identities=26% Similarity=0.273 Sum_probs=60.9
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCC-ceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~ 337 (507)
..++|+++++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 45789999999987643 4688888865 333321 12343333 367999999888765 2 3467899999997
Q ss_pred CCCC----CCCeeEEEEEECcccC
Q 010550 338 DKVG----GHDRLGMQLVPLKLLT 357 (507)
Q Consensus 338 ~~~~----~d~~lG~~~i~l~~l~ 357 (507)
.... ....+|.+.++|-+-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 6421 1246999999987643
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0089 Score=65.12 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=57.0
Q ss_pred ceEEEEEEeeeecCCCC--------CCCCcEEEEEEcCeEE-EeeeecCCCCCcccceEEEEecCCCCCceEEEEEEECC
Q 010550 428 AGLLSVLVQGAEDVEGE--------NHNNPYAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~--------~~~dPyv~v~~~~~~~-kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~~ 498 (507)
-|.|.++|.+|+-+... ...||||.|.+++.+. +| .+..||+|+|.|...|... .+..+.+.|+| +
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~-~ 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT-K 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec-C
Confidence 46799999998733210 1349999999998765 88 5667999999999999886 23579999999 5
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
..+||.+.
T Consensus 84 ~~~ig~~~ 91 (758)
T PLN02352 84 CSILGRFH 91 (758)
T ss_pred CeEEEEEE
Confidence 67888763
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.21 Score=43.54 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=79.6
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeec-CCCCCCeEeeEEEEEeec--------CCCCeEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKE--------PESQILQLQ 333 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~-~~t~nP~Wne~f~f~v~~--------~~~~~L~v~ 333 (507)
.=.+.|++++..+++.. ...-||+...+.......+|... ..+..-.|||.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 34678889999888762 23345555544433112233322 244557899999987651 224578899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
|+....-++...+|.+.++|.+.... ......+++... .+....+++++.+.+..++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRED 140 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECccC
Confidence 99875333336899999999999874 455566665321 2456789999988876543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.015 Score=48.86 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=50.0
Q ss_pred EEEEEeeeecCCC----------------CCCCCcEEEEEE----cCeEEEeeeecCCCCCcccceEEEEec--------
Q 010550 431 LSVLVQGAEDVEG----------------ENHNNPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLD-------- 482 (507)
Q Consensus 431 L~V~v~~a~~L~~----------------~~~~dPyv~v~~----~~~~~kT~v~~~t~nP~wnE~f~f~v~-------- 482 (507)
|.|.|++|.+|.. .=..|+||.+.+ +++.++|+++-++..|.|+..++|.|+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 3567777776631 115799999995 345679999999999999999999987
Q ss_pred CCC------CCceEEEEEEEC
Q 010550 483 EPP------LHEKIHIEVMSK 497 (507)
Q Consensus 483 ~~~------~~~~L~v~V~d~ 497 (507)
... ....+.++||.+
T Consensus 81 e~~sLAElLe~~eiil~vwHr 101 (143)
T cd08683 81 EAISLAELLESAEIILEVWHR 101 (143)
T ss_pred ccccHHHHhhcceEEeeeeec
Confidence 110 123799999987
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.019 Score=62.12 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=59.9
Q ss_pred CceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEEEeeeec-CCCCCcccc-eEEEE-ecCCCCCceEEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKMIR-KTRDPAWNE-EFQFM-LDEPPLHEKIHIEVMS 496 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~-------~~~kT~v~~-~t~nP~wnE-~f~f~-v~~~~~~~~L~v~V~d 496 (507)
-++.+.|+|++|+=|..+ ....||.|.+-| +.++|+++. ++.||+|+| .|.|. |..|+ -.+|.|.|++
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe-LA~lRiavye 778 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE-LASLRIAVYE 778 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc-hhheeeeeec
Confidence 456799999999998774 566999999965 234888776 489999997 58876 33332 3699999999
Q ss_pred CCCCeeee
Q 010550 497 KRTGVIGA 504 (507)
Q Consensus 497 ~~~~~iG~ 504 (507)
.++.+||+
T Consensus 779 EggK~ig~ 786 (1189)
T KOG1265|consen 779 EGGKFIGQ 786 (1189)
T ss_pred cCCceeee
Confidence 99999997
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.24 Score=43.51 Aligned_cols=129 Identities=17% Similarity=0.255 Sum_probs=87.8
Q ss_pred CceEEEEEEEEEeccccccC--cCCCCCcEEEE--EEcCccCCceeeeecCCCCCCeEeeEEEEEeecCC----------
Q 010550 261 KPVGILHVKVVRASKLLKKD--FLGTSDPYVKL--SLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---------- 326 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~v--~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---------- 326 (507)
...-.|.++|..++-....- ..+..+.-..+ .+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 34567888888877433211 11344444444 446666 58889999999999999999987432
Q ss_pred ---CCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce--EEEEeccccccCCCCCCCccceEEEEEEEEEecc
Q 010550 327 ---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 327 ---~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~ 396 (507)
.+.+++.|--.|..+...++|+-.++-+.+...... ....++.... ...+...|-+.++++..|..
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence 356788888777766668999999998887765443 5555553321 11234789999999998854
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.022 Score=61.68 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=67.7
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc----cCCceeeeecC-CCCCCeEee-EEEEE-eecCCCCeEEEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE----KLPWKKTTVKK-KNLNPEWNE-NFKLV-VKEPESQILQLQVF 335 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~----~~~~~~T~v~~-~t~nP~Wne-~f~f~-v~~~~~~~L~v~V~ 335 (507)
.+.+.|+|+++.-|..++ ...||.|.+-+- ....++|++.. ++.||+|+| .|.|. |.-++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 467899999999987664 348999998542 11345677665 789999996 56664 33455678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
+++ ..+||+-.+|+..+..+
T Consensus 778 eEg----gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred ccC----CceeeeeccchhcccCc
Confidence 975 36999999999999877
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.1 Score=47.22 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=60.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCC-ceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~ 337 (507)
..++|+++++.++... ....+-||.+.+ |+.... ...|+....+.++.|||...|.+. + |....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3688999999999862 234667777644 444331 234555454567999999988764 2 3467899999997
Q ss_pred CCCC----------------CCCeeEEEEEECccc
Q 010550 338 DKVG----------------GHDRLGMQLVPLKLL 356 (507)
Q Consensus 338 ~~~~----------------~d~~lG~~~i~l~~l 356 (507)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5422 134678777776553
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.019 Score=56.59 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=60.9
Q ss_pred CCceEEEEEEeeeecCCCC----CCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEE
Q 010550 426 SGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d 496 (507)
...|-+.|.|++|++|..+ ..++|||+|++-.. ++||+...+|.+|-|.+...|.-..+ ...|.+.||.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~--~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP--GKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC--ccEEEEEEec
Confidence 3567899999999999653 37999999999543 45999999999999998888865443 4689999997
Q ss_pred C-----CCCeeee
Q 010550 497 K-----RTGVIGA 504 (507)
Q Consensus 497 ~-----~~~~iG~ 504 (507)
+ .+.|+|.
T Consensus 344 dygRmd~k~fmg~ 356 (405)
T KOG2060|consen 344 DYGRMDHKSFMGV 356 (405)
T ss_pred cccccchHHHhhH
Confidence 6 4456654
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.12 Score=45.89 Aligned_cols=93 Identities=25% Similarity=0.299 Sum_probs=60.7
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccC-CceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~ 337 (507)
..++|++....++...+ ....+-||++.+ +++.. ....|.......++.|||...|.+. + +....|.+++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888887776421 234567777754 43322 2223433333478999999888764 2 3467899999998
Q ss_pred CCCC--CCCeeEEEEEECcccC
Q 010550 338 DKVG--GHDRLGMQLVPLKLLT 357 (507)
Q Consensus 338 ~~~~--~d~~lG~~~i~l~~l~ 357 (507)
+..+ .+..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4578999999987643
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.1 Score=46.42 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=50.7
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEE--cCeEE----EeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEGENHNNPYAIILY--KGDKK----RTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~~dPyv~v~~--~~~~~----kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
-++|+|+++.+++-+..+|-||++.+ |++.. .|+.+.. .++.|||-++|.+. +.+.+..|.|.||+.
T Consensus 9 ~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 9 NLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 48999999999987667788988865 44432 4554444 78999999888764 445667999999986
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.078 Score=51.04 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=78.6
Q ss_pred ccCceEEEEEEEEEeccccccCc--CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d 336 (507)
.....|+|.+++..+++|+.... +-.-+-||++..+.+. ..+|.+.....-=.|.|+|+..+.+ ...+.+-||.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 34467999999999999975432 3356889999887543 3466665555555799999998875 3578999999
Q ss_pred cCCCCCCCeeEEEEEECcccCC-CCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
++.-.++++.-.-.+.+..+.. +..+..-+. -.++|++.+++.+..
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLAD 168 (442)
T ss_pred cCchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccCC
Confidence 9876666653222333333322 222333332 346788888887654
|
|
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.41 Score=37.79 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE
Q 010550 285 SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF 364 (507)
Q Consensus 285 ~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~ 364 (507)
++-.+.+.+++..+ .+|.-+ ...+..|++.|.+.+. .+.+|+|.||-+|- ..+-|...+-|.+... ..
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEcCeEE--eecccc-ccccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 57788888887554 344442 2357789999999986 46899999998863 3467777777877322 22
Q ss_pred EEeccccccCCCCCCCccceEEEEEEEE
Q 010550 365 TLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
.++ -.+.|.+...++|
T Consensus 77 ~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 77 QLD------------MEPQLCLVAELTF 92 (98)
T ss_pred eec------------cccccEEEEEEEe
Confidence 222 3467888888887
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.22 Score=45.03 Aligned_cols=93 Identities=23% Similarity=0.236 Sum_probs=62.2
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCCc-eeeeecC----CCCCCeEeeEEEEEee---cCCCCeEEEE
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK---EPESQILQLQ 333 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~---~~~~~~L~v~ 333 (507)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. -+....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 567899999999987654445788888865 4433211 1333211 1235779999888765 2346789999
Q ss_pred EEEcCCCC---------CCCeeEEEEEECccc
Q 010550 334 VFDWDKVG---------GHDRLGMQLVPLKLL 356 (507)
Q Consensus 334 V~d~~~~~---------~d~~lG~~~i~l~~l 356 (507)
+|+....+ .+..||.+.++|-+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 345889998888664
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.23 Score=44.86 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=51.1
Q ss_pred EEEEEEeeeecCCC-CCCCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEG-ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~-~~~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
.++|+|+++.++.. ....+-||++.+ |++. ..|+.+....++.|||.++|.+. +.|.+..|.|.||+.
T Consensus 9 ~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 48999999999986 446777888644 5543 26666665678999999988764 445667999999986
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.52 Score=42.67 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=45.4
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCCceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~~ 338 (507)
.++|+|.++..+ ..+......-||++.+ ++......+|+...-+.++.|||...|.+. + +....|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467788887633 2222222335666543 433332335666666778999998888765 2 34678999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.26 Score=43.88 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=51.7
Q ss_pred CCCCcEEEEEE--cCccC-CceeeeecCCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcCCCCCCCeeEEEEEECccc
Q 010550 283 GTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 283 g~~dpyv~v~l--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 356 (507)
..+|-||++.+ ++... ....|+.+.-+..+.|||...|.+. + +.+..|.|+||+.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677887765 33222 1124555555667889999888875 2 34678999999987655667899999998664
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.6 Score=39.19 Aligned_cols=72 Identities=18% Similarity=0.330 Sum_probs=53.1
Q ss_pred CCCcEEEEEEcCccCCceeeeecC--CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 010550 284 TSDPYVKLSLTGEKLPWKKTTVKK--KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 284 ~~dpyv~v~l~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
+..-|+++.++++.+ .+|+... ....-.+||.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 456799999998765 3444332 333346889999999763 4689999999886 6778999999998766543
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.58 Score=40.82 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=40.4
Q ss_pred eeeecCCC-CCCeEeeEEEEEee---cCCCCeEEEEEEEcCCCCCC----CeeEEEEEECccc
Q 010550 302 KTTVKKKN-LNPEWNENFKLVVK---EPESQILQLQVFDWDKVGGH----DRLGMQLVPLKLL 356 (507)
Q Consensus 302 ~T~v~~~t-~nP~Wne~f~f~v~---~~~~~~L~v~V~d~~~~~~d----~~lG~~~i~l~~l 356 (507)
.|+....+ .++.|||...|.+. -|....|.|+||..+....+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999998875 24577899999998765554 6899999998765
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.1 Score=40.77 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=42.0
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCCCC--CCeeEEEEEECc
Q 010550 299 PWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGG--HDRLGMQLVPLK 354 (507)
Q Consensus 299 ~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~d~~~~~~--d~~lG~~~i~l~ 354 (507)
..++|.+...+.+|.|+|++.+.+.. .....|.|+.++.....+ ...+|.+.+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 34689999999999999999988763 246678898887543221 257899988884
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.87 Score=40.10 Aligned_cols=71 Identities=25% Similarity=0.432 Sum_probs=51.3
Q ss_pred CceEEEEEEeeeecCCC-----CCCCCc--EEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCC------------CC
Q 010550 427 GAGLLSVLVQGAEDVEG-----ENHNNP--YAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP------------LH 487 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~-----~~~~dP--yv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~------------~~ 487 (507)
....|++.|..++-.-. .+..+. ++-+.+++++.+|+.+..+.+|.|+|.|-|.+.... ..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 45679999998874321 023333 445556899999999999999999999999998663 23
Q ss_pred ceEEEEEEEC
Q 010550 488 EKIHIEVMSK 497 (507)
Q Consensus 488 ~~L~v~V~d~ 497 (507)
+.+++-|.-.
T Consensus 87 ~pihivli~~ 96 (156)
T PF15627_consen 87 DPIHIVLIRT 96 (156)
T ss_pred CceEEEEEEe
Confidence 4677777543
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.9 Score=39.52 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=42.2
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCC-CCC---CeeEEEEEECc
Q 010550 299 PWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKV-GGH---DRLGMQLVPLK 354 (507)
Q Consensus 299 ~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V~d~~~~-~~d---~~lG~~~i~l~ 354 (507)
...+|.+...+.+|.|+|++.+.+.. .....|.|++++.... .+| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 34688898999999999999988763 3467899999886422 122 46899999885
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=91.78 E-value=6 Score=36.04 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=34.5
Q ss_pred ceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCCC---CeeEEEEEECcc
Q 010550 300 WKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGH---DRLGMQLVPLKL 355 (507)
Q Consensus 300 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d~~~~~~d---~~lG~~~i~l~~ 355 (507)
...|.+..++.+|.|+|+|.+.+... ....|.|++++...-.+. ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45788888999999999999988743 356799999987643221 589999999987
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.1 Score=52.20 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=60.9
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEc---C--eEEEeeeecCCCCCcccceEEEEecCCCC-Cc---------e
Q 010550 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYK---G--DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HE---------K 489 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~---~~~~dPyv~v~~~---~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~---------~ 489 (507)
...|.+.|.++++++. ..+.|-|+++.+- + ++.||.+++.|.+|.|+|.|...+...+. +. -
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 3457777888888763 3478999999872 2 34599999999999999999999987432 11 4
Q ss_pred EEEEEEEC-----CCCeeeeEe
Q 010550 490 IHIEVMSK-----RTGVIGACG 506 (507)
Q Consensus 490 L~v~V~d~-----~~~~iG~~~ 506 (507)
+.++++.+ +|.++|-|.
T Consensus 446 ~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred eeEEEeeccccccccceeceee
Confidence 88999987 788998764
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.4 Score=39.04 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=52.0
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC--
Q 010550 430 LLSVLVQGAEDVEG--ENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK-- 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~--~~~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~-- 497 (507)
.++|.++...++.. ....+-||++.+ |++. ..|.......++.|||-++|.+. +.+.+..|.+.||+.
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 47888888888764 234666777654 4442 24444444478999999999854 445567999999986
Q ss_pred C----CCeeeeEe
Q 010550 498 R----TGVIGACG 506 (507)
Q Consensus 498 ~----~~~iG~~~ 506 (507)
. +..||.+.
T Consensus 89 ~~~~~~~~iG~~~ 101 (156)
T cd08380 89 PGSKKEVPLGWVN 101 (156)
T ss_pred CCCCcceEEEEEe
Confidence 1 35788763
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=87.77 E-value=3.4 Score=33.57 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=46.1
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEE--cCccCC-ceeeeecCCCCCCeEeeEEEEEee---cCCCCeEEEEEEEcC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFDWD 338 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~V~d~~ 338 (507)
+.+.+..+.+.........++-||.+.+ +++... ...|+.+.-...+.|||...|.+. -+....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566666666654432223578888865 433321 224555555566899999888765 234678999999865
|
Outlier of C2 family. |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.5 Score=38.25 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=45.2
Q ss_pred EEEEEEeeeecCCCCCC--CCcEEEEEE--cCeE---EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 430 LLSVLVQGAEDVEGENH--NNPYAIILY--KGDK---KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~--~dPyv~v~~--~~~~---~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
-++|+|+++.++..... ..-||++.+ |++. .+|+.+.-+.+|.|||-++|.+. +.+.+..|.+.||+.
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 37888888875433223 334555533 4432 26666666788999998888865 445566999999985
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=84.62 E-value=5.9 Score=32.14 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=45.3
Q ss_pred EEEEEeeeecCCCCC---CCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 431 LSVLVQGAEDVEGEN---HNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 431 L~V~v~~a~~L~~~~---~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
+.+.+..+++.+... .++-||++.+ |++. ..|+.+.-...+.|||-++|.+. +-+.+..|.+.+|+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 556666777765431 2367888754 5443 25665555667999999888764 445566999999987
|
Outlier of C2 family. |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=84.20 E-value=2.6 Score=37.55 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEECC----CCeeeeEe
Q 010550 446 HNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSKR----TGVIGACG 506 (507)
Q Consensus 446 ~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~~----~~~iG~~~ 506 (507)
.+|-||++.+ +++. ..|+.+.-+..+.|||-++|.|. +.+.+..|.|.|||.. ...+|.+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~ 101 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTT 101 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEE
Confidence 4677777755 4432 26666666778899999888865 4456679999999972 34777653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=83.05 E-value=3.1 Score=41.72 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=62.2
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCC------CceEEEEEEEC-----CC
Q 010550 431 LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL------HEKIHIEVMSK-----RT 499 (507)
Q Consensus 431 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~------~~~L~v~V~d~-----~~ 499 (507)
+.|.|.+|++.+....-.-.+..+++++...|..+.++..|.||..+.+.+....+ +.+|.++++-- ..
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~r 81 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKR 81 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcc
Confidence 67889999999986566778999999999999999999999999999999875422 34788888643 66
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
+.||.+.
T Consensus 82 e~iGyv~ 88 (340)
T PF12416_consen 82 ESIGYVV 88 (340)
T ss_pred eeccEEE
Confidence 7888763
|
|
| >cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=80.98 E-value=29 Score=31.70 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=60.7
Q ss_pred hcccCCccceecccccccccccCceE-EEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEe
Q 010550 239 GIYIWPQTYEIPILDASSVAIKKPVG-ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWN 315 (507)
Q Consensus 239 ~~~v~P~~~~~~l~~~~~~~~~~~~g-~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wn 315 (507)
..+|.|..+.++-.. ....++. .++|.+.+..+- ...|.-.++.+... .....|.+..++.+|.|.
T Consensus 4 ~LYVYP~~l~~~~~k----~~~kaRNI~V~V~lrd~D~~-------~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~ 72 (185)
T cd08697 4 HLYVYPLHLKYDSQK----TFAKARNIAVCIEFRDSDEE-------DAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFY 72 (185)
T ss_pred eEEEcccEEEecccc----cccccccEEEEEEEEeCCCC-------cCccceEEecCCCCCcceEEEEEEEEcCCCCccc
Confidence 457788877755221 1112222 355665554321 11222222222211 234578888899999999
Q ss_pred eEEEEEeec--CCCCeEEEEEEEcCCC--C-------CCCeeEEEEEECcc
Q 010550 316 ENFKLVVKE--PESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL 355 (507)
Q Consensus 316 e~f~f~v~~--~~~~~L~v~V~d~~~~--~-------~d~~lG~~~i~l~~ 355 (507)
|++.+.+.- .....|.|+.|+.+-. . ....+|.+.+||-.
T Consensus 73 dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 73 DEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 999888753 2356799999986521 1 12457888887755
|
Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 507 | ||||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-07 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 7e-07 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 2e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 5e-06 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 6e-06 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 2e-05 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 4e-05 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 4e-04 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 4e-04 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 8e-04 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 8e-04 |
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 1e-44
Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 51/257 (19%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE FK+
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
E + L + V+D+D+ HD +G VP+ + E DL + ++ +
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA----EKEEQE 134
Query: 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED- 440
+ G I L YVP AG L+V++ A++
Sbjct: 135 KLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNL 162
Query: 441 --VEGENHNNPYA-IILYKGD----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-IHI 492
++ ++PY I L + KK+T + + T +P +NE F F + + + + +
Sbjct: 163 KKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 222
Query: 493 EVMSKRTG----VIGAC 505
V+ IG
Sbjct: 223 TVLDYDKIGKNDAIGKV 239
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 7e-20
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFK 319
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE +F+
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPL 353
+ ++ + + + V D+DK+G +D +G V
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 243
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 428 AGLLSVLVQGAEDVEGENHN---NPYA---IILYKGDKKRTKMIRKTRDPAWNEEFQFML 481
L V + A ++ + +PY ++ K K TK+ RKT +P +NE+F F +
Sbjct: 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77
Query: 482 DEPPLHEK-IHIEVMS 496
L K + + V
Sbjct: 78 PYSELAGKTLVMAVYD 93
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 3e-42
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 5/170 (2%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK---KTTVKKKNLNPEWNE 316
++ VKV+ L KKD LG SDPYV+++L +T KK+LNP+WNE
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V P+ + +VFD +++ D LG VPL L + K +
Sbjct: 64 EILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122
Query: 377 P-KDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEAL 425
+ +G + +++TY+P + + +++ DQ L
Sbjct: 123 RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHL 172
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-06
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 429 GLLSVLVQGAEDVEGENHNN---PYAII------LYKGDKKRTKMIRKTRDPAWNEEFQF 479
++ V V + ++ PY + +TK I+K+ +P WNEE F
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 480 MLDEPPLHEKIHIEVM 495
+ P +I EV
Sbjct: 68 RV--LPQRHRILFEVF 81
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-41
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S P G L V +V A L DFL DPYV+L+ + K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
E F V E ++ L+ ++FD D D +G +PL+ + + T +
Sbjct: 60 ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNV------ 112
Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
KD + +G+I V L++ P S
Sbjct: 113 -VKDEEYKGEIWVALSFKPSGPSS 135
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 8e-10
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMI-RKTRDPAWNEEFQFMLDEP 484
G L V++ A+ +E + +PY + + +++ + P WNE F F + E
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 485 PLHEKIHIEVM 495
++ ++
Sbjct: 70 --TTELKAKIF 78
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-41
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK 319
G+L V V A + K G DP V + EK KKT LNP WNE +
Sbjct: 3 SGSSGMLRVIVESA-SNIPKTKFGKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILE 58
Query: 320 LVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
++ S L + V D++ +G + +G V LK LT +++ L+ + +
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLN 115
Query: 377 PKDMKQRGKIVVELTYVPFKEDS 399
K I + + Y P S
Sbjct: 116 EKGQDTGATIDLVIGYDPPSGPS 138
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-11
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 428 AGLLSVLVQGAEDVEGENHNN--PYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP 485
+G+L V+V+ A ++ P +++K +KK+TK + +P WNE +F L P
Sbjct: 6 SGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65
Query: 486 L--HEKIHIEVM 495
L + I V
Sbjct: 66 LDFSSSLGIIVK 77
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-41
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW---KKTTVKKKNLNPEWNE 316
++ I+ V+V+ L KKD LG SDPYV+++L +T KK+LNP+WNE
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
V P+ L +VFD +++ D LG VPL L + K +
Sbjct: 76 EILFRVH-PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 377 P-KDMKQRGKIVVELTYVP 394
+ +G + +++TY+P
Sbjct: 135 RSHKSRVKGYLRLKMTYLP 153
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNN---PYAII------LYKGDKKRT 462
+ E + ++ V V + ++ PY + +T
Sbjct: 3 ATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQT 62
Query: 463 KMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVM 495
K I+K+ +P WNEE F + P ++ EV
Sbjct: 63 KTIKKSLNPKWNEEILFRV--HPQQHRLLFEVF 93
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-40
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 254 ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPE 313
+ S K VGIL VKV++A+ LL DF G SDP+ L L ++L +T KNLNPE
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPE 59
Query: 314 WNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
WN+ F +K+ +L++ VFD D D LG +PL + + + L
Sbjct: 60 WNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-- 116
Query: 374 ISDPKDMKQRGKIVVELTYV 393
+ +G I +E+ +
Sbjct: 117 -----EQAFKGVIYLEMDLI 131
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-09
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 419 SSDEEALSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWNE 475
S + G+L V V A D+ + + +P+ ++ D+ +T + K +P WN+
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62
Query: 476 EFQFMLDEPPLHEKIHIEVM 495
F F + + H+ + + V
Sbjct: 63 VFTFPIKDI--HDVLEVTVF 80
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 7e-40
Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 54/259 (20%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V++++A L KD G SDPYVK+ L ++ +T V +K LNP +NE F+ V
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79
Query: 324 --EPESQILQLQVFDWDKVGGHDRLGMQLVP--LKLLTPHETKEFTLDLLKHTNISDPKD 379
E + L V+D+D+ HD +G ++ L+L + D+L+ +
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SE 134
Query: 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAE 439
G++ L Y+P AGLL+V + A
Sbjct: 135 KADLGELNFSLCYLPT--------------------------------AGLLTVTIIKAS 162
Query: 440 DVEGENHN---NPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-I 490
+++ + +PY + K++T + + T +P +NE F + + +
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222
Query: 491 HIEVMSKRTG----VIGAC 505
I V+ VIG C
Sbjct: 223 SIAVVDYDCIGHNEVIGVC 241
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 6e-21
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNE--NFK 319
G+L V +++AS L D G SDPYVK SL G +L +KT++KK LNP +NE F
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 320 LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+ + E+ L + V D+D +G ++ +G+ V + PH + + ++L +
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWA-EMLAN 262
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 426 SGAGLLSVLVQGAEDVEGENHN---NPYA---IILYKGDKKRTKMIRKTRDPAWNEEFQF 479
G+ L V + A D+ ++ N +PY ++ + K +TK+ RKT +P +NE FQF
Sbjct: 17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76
Query: 480 MLDEPPLHEK-IHIEVMS----KRTGVIGAC 505
+ L ++ +H V R +IG
Sbjct: 77 SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 107
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-35
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE F+ ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+ +L++ + D + + LG + + E KE +
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113
Query: 383 RGKIVVELT 391
+ + L
Sbjct: 114 EMVLEMSLE 122
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-07
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 428 AGLLSVLVQGAEDVEGENHNN------PYAIILYKGD---KKRTKMIRKTRDPAWNEEFQ 478
+ +V+V A V + PY + +KRT+ +P WNE F+
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 479 FMLDEPPLHEKIHIEVM 495
F+LD + I +M
Sbjct: 62 FILDPNQ-ENVLEITLM 77
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-34
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
Query: 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK 307
E + + K + + VV A L KD G+SDPYV + + K K+T
Sbjct: 1 EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIY 57
Query: 308 KNLNPEWNENFKLVVKEPESQILQLQVFDWD-----------KVGGHDRLGMQLVPLKLL 356
NLNP W ENF S ++++V D D K D LG ++ ++ L
Sbjct: 58 GNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
Query: 357 TPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392
+ + LD G I + ++
Sbjct: 117 SGEMDVWYNLD-------KRTDKSAVSGAIRLHISV 145
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 3e-10
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 418 QSSDEEALSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRDPAWN 474
QS + + +S+ V A+ ++ ++ +PY + KKRTK I +P W
Sbjct: 6 QSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWE 65
Query: 475 EEFQFMLDEPPLHEKIHIEVM 495
E F F ++I + V+
Sbjct: 66 ENFHFECHNS--SDRIKVRVL 84
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 7e-34
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFK---L 320
L VK+++A +L KDF GTSDP+VK+ L +K +T VK+KNLNP WNE F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
++ +IL LQV D+D+ +D +G +PL + + + F DL S
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIILYKGDKKR---TKMIRKTRDPAWNEEFQFML 481
L+V + A++ + ++P+ I DKK TK+ RK +P WNE F F
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84
Query: 482 --DEPPLHEKIHIEVM 495
E + ++++V+
Sbjct: 85 FPYEKVVQRILYLQVL 100
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-33
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP 325
+ + V+ A L KKDF DP+ K+ + G T K L+P+WN+++ L V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQC-HSTDTVKNTLDPKWNQHYDLYV--G 63
Query: 326 ESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMK 381
++ + + V++ K+ LG + ++ +T LDL K +
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL---NPSDTDA 120
Query: 382 QRGKIVVELTY 392
RG+IVV L
Sbjct: 121 VRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 426 SGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGD--KKRTKMIRKTRDPAWNEEFQFM 480
S + + V A+++ ++ +P+A I+ G T ++ T DP WN+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY 61
Query: 481 LDEPPLHEKIHIEVM 495
+ + + I I V
Sbjct: 62 VGK---TDSITISVW 73
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-32
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 255 SSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW 314
S+ L + V+ A K PYV++++ G+ KKT +P+W
Sbjct: 27 GSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKW 83
Query: 315 NENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLL 369
+ ++V L +V+ + LG + + E TL L
Sbjct: 84 KQPLTVIVT--PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG 141
Query: 370 KHTNISDPKDMKQRGKIVVEL 390
D + + G + + L
Sbjct: 142 -----GDKEPTETIGDLSICL 157
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-12
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 414 SGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIRKTRD 470
Q +L+ L + V A+ E + + +PY + G K+T+ T
Sbjct: 21 DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNS 80
Query: 471 PAWNEEFQFMLDEPPLHEKIHIEVMSKRT 499
P W + ++ K+H V S +T
Sbjct: 81 PKWKQPLTVIVTP---VSKLHFRVWSHQT 106
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-31
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFK-- 319
L ++RA L D G +DPYVKL L K +T + NP WNE +
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370
+ ++ + + L++ V D DK G ++ +G LK L ++ K F + L +
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYAII-----LYKGDKKRTKMIRKTRDPAWNEEFQF 479
L + A+ ++ +PY + K +K RTK +R TR+P WNE Q+
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 480 ML--DEPPLHEKIHIEVM 495
+E + + I V
Sbjct: 88 HGITEEDMQRKTLRISVC 105
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-30
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIIL---YKGDKKRTKMIRKTRDPAWNEEFQFML 481
L V + A + ++ ++PY + K K TK+ RKT +P +NE+F F +
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 482 DEPPLHEK-IHIEVMS 496
L K + + V
Sbjct: 93 PYSELGGKTLVMAVYD 108
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-29
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE F V
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101
Query: 324 EPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 9e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIIL---YKGDKKRTKMIRKTRDPAWNEEFQFML 481
L V + A + ++ ++PY + K K TK+ RKT +P +NE+F F +
Sbjct: 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 482 DEPPLHEK-IHIEVMS 496
L K + + V
Sbjct: 101 PYSELGGKTLVMAVYD 116
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
+L V V A L+ D G SDPYVKL L + +KT K +LNPEWNE F+
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+KE + + L ++++DWD +D +G + L + LL
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFM 480
+L V+V+ A+++ + N +PY + D K++TK I+ + +P WNE F+F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 481 LDEPPLHEKIHIEVM 495
L E ++ +E+
Sbjct: 91 LKESDKDRRLSVEIW 105
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 118 bits (295), Expect = 3e-28
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 260 KKPVGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
+ V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 317 NFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376
F+ ++ + +L++ + D + V + LG + + E KE + T +
Sbjct: 74 TFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 377 PKDMKQR 383
++
Sbjct: 133 EMSLEVC 139
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 49.2 bits (116), Expect = 2e-06
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 429 GLLSVLVQGAEDVEGENHN------NPYAII---LYKGDKKRTKMIRKTRDPAWNEEFQF 479
+V+V A V +PY + +KRT+ +P WNE F+F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 480 MLDEPPLHEKIHIEVMSK 497
+LD P + I +M
Sbjct: 78 ILD-PNQENVLEITLMDA 94
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-26
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 22/157 (14%)
Query: 245 QTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF----------LGTSDPYVKLSLT 294
+ + + S K G L V++ A L + DPY+ +S+
Sbjct: 10 HSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD 69
Query: 295 GEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
++ +T+ K+K P +NE F V + L+L VF +G + + +
Sbjct: 70 QVRV--GQTSTKQKTNKPTYNEEFCANV--TDGGHLELAVFHETPLGYDHFVANCTLQFQ 125
Query: 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391
L T + D++ GK+ V +T
Sbjct: 126 ELLRTTGASDTFEGW--------VDLEPEGKVFVVIT 154
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-06
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 403 SSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAED-------------VEGENHNNP 449
SS + G S + G L V + A +G +P
Sbjct: 3 SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDP 62
Query: 450 YAIILYKGDKK-RTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497
Y + + +T +KT P +NEEF + + + + V +
Sbjct: 63 YLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLELAVFHE 108
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-24
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V + A L D TSDPY+K+++ EK KT V +K L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKH 371
L + +D+ D +G L+PL + +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 428 AGLLSVLVQGAEDV----EGENHNNPYAIIL---YKGDKKRTKMIRKTRDPAWNEEFQFM 480
V ++ A + E ++PY + K K +T+++RKT DPA++E F F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF- 79
Query: 481 LDEPPLHEKIHIEVMSKRT 499
I + +
Sbjct: 80 -------YGIPYTQIQELA 91
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-24
Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 25/143 (17%)
Query: 261 KPVGILHVKVVRASKLLKKDF-----------LGTSDPYVKLSLTGEKLPWKKTTVKKKN 309
G+L +K+ A L + DPY+ L++ ++ +T K+K
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKT 60
Query: 310 LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
+P W++ F V ++L VF +G D + + + L + ++ F +
Sbjct: 61 NSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI- 117
Query: 370 KHTNISDPKDMKQRGKIVVELTY 392
D++ GK+ V +
Sbjct: 118 ---------DLEPEGKVYVIIDL 131
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 448 NPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497
+PY + + +T +KT PAW++EF + KI + V
Sbjct: 39 DPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIELAVFHD 86
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 4e-24
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWK-KTTVKKKNLNPEWNENFKLVV 322
L V + A + G D YV+ S+ + +T +KK+ L+ W E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 323 KEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
E E + L L + D+ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Query: 431 LSVLVQGAEDVEGENHNNPYAIIL----YKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL 486
L V A + + Y + +T + ++ W E L E L
Sbjct: 28 LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87
Query: 487 HEK-IHIEVMS----KRTGVIG 503
+ + + + R V G
Sbjct: 88 PTATLTLTLRTCDRFSRHSVAG 109
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 7e-24
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW-----------KKTTVKKKNLNP 312
G L + +++A L+ +D G SDP+VK+ L + ++T +K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 313 EWNENFKLVVKEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
EWN+ E + L++ V+D+D+ +D LG L+ L + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
Query: 370 KHT 372
+ T
Sbjct: 138 EQT 140
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 429 GLLSVLVQGAEDVEGENHN---NPYAII--------------LYKGDKKRTKMIRKTRDP 471
G L + + A ++ ++N +P+ + K+RTK ++K+ +P
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 472 AWNEEFQFML--DEPPLHEKIHIEVM 495
WN+ + E + + + + V
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVW 103
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 6e-23
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKL 320
L V V +L D S+PYVK L + +KT++K+ +NP ++E +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
+ E + LQ V+ + G + LG + + + + L L
Sbjct: 83 EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 428 AGLLSVLVQGAED----VEGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEF 477
L V V+ E + +NPY + Y + K++T + R T +P ++E
Sbjct: 22 TQSLVVHVKECHQLAYADEAKKRSNPY-VKTYLLPDKSRQGKRKTSIKRDTVNPLYDETL 80
Query: 478 QFMLDEPPLHEK-IHIEVMS 496
++ + E L ++ + V
Sbjct: 81 RYEIPESLLAQRTLQFSVWH 100
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 1e-22
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 264 GILHVKVVRASKL-------LKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE 316
L V+V+ A L + + S+PYVK+ L ++ K+T VK+K P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 317 NFKLVVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368
+ + E + L L V D+DK H +G VPL + + + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 431 LSVLVQGAEDVEGENHNNPYAIILY----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL 486
L + + H+NPY + + + + K+T + RKT+ P + E + F +
Sbjct: 38 LPPPISHDGSRQDMAHSNPY-VKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEA 96
Query: 487 HEK-IHIEVMS 496
+ + + V+
Sbjct: 97 QRRTLLLTVVD 107
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-22
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 242 IWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLT--GEKL 298
+ QT P + + ++ G L V+V+RA L +K T PYVK+ L G +
Sbjct: 8 VGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI 67
Query: 299 PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DWDKVGGHDRLGMQLVPLKLLT 357
KKT + +K L+P + ++ P+ ++LQ+ V+ D+ ++ +G+ + L+ L
Sbjct: 68 AKKKTRIARKTLDPLYQQSLVFDE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126
Query: 358 PHETKEFTLDLLKHTNISDP 377
L +++ DP
Sbjct: 127 LSSMVIGWYKLFPPSSLVDP 146
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 428 AGLLSVLVQGAEDV----EGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEF 477
G L V V A + ++ PY + +Y KK+T++ RKT DP + +
Sbjct: 29 KGQLEVEVIRARSLTQKPGSKSTPAPY-VKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87
Query: 478 QFMLDEPPLHEKIHIEV 494
F DE P + + + V
Sbjct: 88 VF--DESPQGKVLQVIV 102
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 7e-22
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++R L D G SDP+VKL L K KT +KKK LNPE+NE F
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
+K + + L + V+D+D +D +G + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYA-IILY----KGDKKRTKMIRKTRDPAWNEE 476
+ G L V + + + N +P+ + L K K +T++ +KT +P +NEE
Sbjct: 33 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 92
Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTG----VIGAC 505
F + + L +K + I V G IG C
Sbjct: 93 FFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGC 126
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-21
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+ V +++A L D GTSDPYVK+ L +++ KKT KK+NLNP +NE+F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + + + V D DK+ +D +G + K
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYAII-LYKGD----KKRTKMIRKTRDPAWNEE 476
A + V + A +++ + +PY + L D KK+T ++ +P +NE
Sbjct: 12 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNES 71
Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTG----VIGAC 505
F F + L E I I VM K VIG
Sbjct: 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKI 105
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 5e-21
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL---TGEKLPWKKTTVKKKNLNPEWNENFKL 320
+ +++ S L +++++ + +T + +NE F +
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 321 VVKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ P + L++ V D+ + LG + L
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLA 138
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 456 KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEK-IHIEVMS 496
RT+ + + +NE F + P LH+K + ++V +
Sbjct: 79 TTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT 120
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 6e-21
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE+F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDRLGMQLVPL 353
V + + + V D+DK+G +D +G V
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 425 LSGAGLLSVLVQGAEDVEGENHN---NPYAII-LYKGD----KKRTKMIRKTRDPAWNEE 476
+ AG L+V++ A++++ + +PY I L + KK+T + + T +P +NE
Sbjct: 21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 80
Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTG----VIGAC 505
F F + + + + + V+ IG
Sbjct: 81 FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 114
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-21
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V V L+ SDPYV++ L + +KT V KK LNP ++++F
Sbjct: 24 NKLIVVVHACRNLIAFSE-DGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 322 VKEPE--SQILQLQVFDWDKVGGHDR--LGMQLVPLKLLTPHETKEFTLDLLKHT 372
V PE + L + V + D+ LG LV L + DL + +
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 16/91 (17%)
Query: 428 AGLLSVLVQGAED--VEGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEFQF 479
L V+V + E+ ++PY + +Y + +++T + +KT +P +++ F F
Sbjct: 23 RNKLIVVVHACRNLIAFSEDGSDPY-VRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 480 MLDEPPLHEK-IHIEVM------SKRTGVIG 503
+ P + + + + V SK G++G
Sbjct: 82 SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLG 112
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-20
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
L V V++A L K D G SDPYVK++L +++ KKT VKK N +NE F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 322 VKEPESQI----LQLQVFDWDKVGGHDRLGMQLVPL 353
+ P + ++ V D ++ ++ +G ++
Sbjct: 90 I--PCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 425 LSGAGLLSVLVQGAED---VEGENHNNPYAII-LYKGD----KKRTKMIRKTRDPAWNEE 476
S L+V+V A + ++PY + LY KK+T + + T + +NE
Sbjct: 26 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 85
Query: 477 FQFMLDEPPLHEK-IHIEVMSKRTG----VIGAC 505
F F + L E + V+ G VIG
Sbjct: 86 FVFDIPCESLEEISVEFLVLDSERGSRNEVIGRL 119
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-20
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFK-- 319
G L + V+ L+ +D +PYVK L K +KT + +K NP +NE
Sbjct: 20 GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 320 -LVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374
+ + LQL V + + + LG +PLK + L T +
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL 134
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 429 GLLSVLVQGAED--VEGENHNNPYAIILY------KGDKKRTKMIRKTRDPAWNEEFQFM 480
G L ++V +D E NPY + Y K K++TK+ RKTR+P +NE +
Sbjct: 20 GTLFIMVMHIKDLVTEDGADPNPY-VKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY- 77
Query: 481 LDEPPLHEKIHIEVMSKRT 499
E + +R
Sbjct: 78 -------SGYSKETLRQRE 89
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-20
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
++L++ ++D +V + LG L+ L+ +
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYAII-----LYKGDKKRTKMIRKTRDPAWNEEFQF 479
L V + GA+D E NPY I +K+RTK ++KT +P WN+ F +
Sbjct: 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
Query: 480 MLDEPPLHEKIHIEVMSKRT 499
+H +R
Sbjct: 80 --------SPVHRREFRERM 91
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 6e-20
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 322 VKEPE---SQILQLQVFDWDKVGGH--DRLGMQLVPLKLLTPHETKE 363
++L++ ++D +V + LG L+ L+ +
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 20/96 (20%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYAII-----LYKGDKKRTKMIRKTRDPAWNEEFQF 479
L V + GA+D E NPY I +K+RTK ++KT +P WN+ F +
Sbjct: 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
Query: 480 MLDEPPLHE----KIHIEVM------SKRTGVIGAC 505
E + I + + + +G
Sbjct: 77 --SPVHRREFRERMLEITLWDQARVREEESEFLGEI 110
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 1e-19
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLV 321
+L + ++ L+ K GT DPYVK+SL +L +KT +P ++E+F
Sbjct: 27 RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 322 VKEPESQI-LQLQVFDWDKVGGHDR-LGMQLVPLK 354
V+E + Q L + V++ +G +K
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK 120
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 428 AGLLSVLVQGAED--VEGENHNNPYA-IILY----KGDKKRTKMIRKTRDPAWNEEFQFM 480
+L + + + + +PY I L + ++T+ + RDPA++E F F
Sbjct: 26 DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 481 LDEPPLHEKIHIEVM-----SKRTGVIG 503
+ E +++ + V S+++G+IG
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIG 113
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 76.5 bits (187), Expect = 5e-15
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL- 320
+ L V RA L +D Y+K+ G++ +T V N NP W +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYT-TATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFE 447
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
V L++QV+D D D LG
Sbjct: 448 NVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 7e-07
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 445 NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVM 495
+ Y + + G + RT ++ +P W ++ F + ++V
Sbjct: 412 TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVW 462
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 1e-14
Identities = 13/85 (15%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 418 QSSDEEALSGAGL-LSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPA-WNE 475
S G+ + L V ++ ++ G + A + ++G ++++ D A ++E
Sbjct: 9 HHSSGLVPRGSHMALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDE 66
Query: 476 EFQFMLDEPPL-HEKIHIEVMSKRT 499
F++ + +E + I++ +
Sbjct: 67 TFRWPVASSIDRNEVLEIQIFNYSK 91
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 1e-13
Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP-EWNENFKLVVKE 324
L V + S+L G +D K++ G+ + V + + +++E F+ V
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74
Query: 325 P--ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+++L++Q+F++ KV + +G + L+ + E + L+ D +
Sbjct: 75 SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLI------DDNNAII 128
Query: 383 RGKIVVELTYVP 394
+ + +E+ Y
Sbjct: 129 KTSLSMEVRYQA 140
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 5e-10
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + K TT+ + P W ++F +
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 57
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++V++ + +G +PL+
Sbjct: 58 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 86
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
LL V V+ A+ + N Y L + K T + + P+W ++F F ++ L
Sbjct: 5 SLLCVGVKKAKFDGAQEKFNTYVT-LKVQNVKSTTIAVRGSQPSWEQDFMFEINR--LDL 61
Query: 489 KIHIEVMSK 497
+ +EV +K
Sbjct: 62 GLTVEVWNK 70
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-09
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 266 LHVKVVRASKLLKKDFLGTS--DPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKL 320
L V+++ +L K + S DP V + + G + + + NP W+ F+
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358
V P+ +++ V D+D +D +G +P L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 3e-08
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNL---NPEWNENFKLVV 322
L + ++ A +L K Y +L L + +TT K ++ W E+F+
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDM--LYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 323 KEPESQILQLQVFDWDKVGGHDR---LGMQLVPLKLLTPHETKE 363
+ D DK D+ +G+ VP+ L E
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTE 109
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + + TT+ + P W ++F +
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++V++ + +G +PL+
Sbjct: 67 RLDLGLT-VEVWN-KGLIWDTMVGTVWIPLR 95
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-05
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
LL V V+ A+ + N Y L + + T + + P+W ++F F ++ L
Sbjct: 14 SLLCVGVKKAKFDGAQEKFNTYVT-LKVQNVESTTIAVRGSQPSWEQDFMFEINR--LDL 70
Query: 489 KIHIEVMSK 497
+ +EV +K
Sbjct: 71 GLTVEVWNK 79
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
+G L V V+ A++L G S+PY ++S+ + T + LNP+WN N +
Sbjct: 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQF 440
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKD 379
+K+ +L L +FD D+ D LG +P+ + T E+K L +
Sbjct: 441 FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----- 495
Query: 380 MKQRGKIVVELTYVPF 395
G++ V F
Sbjct: 496 --PTGEVWVRFDLQLF 509
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 8e-04
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTV--KKKNLNPEWNENFKL 320
L + + + G +PY + + KK + P W+ F
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 321 VVKEPESQILQLQVFD 336
+ + +++Q+ V
Sbjct: 70 HIN--KGRVMQIIVKG 83
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.86 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.85 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.84 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.84 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.84 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.83 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.82 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.82 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.82 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.8 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.78 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.77 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.77 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.77 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.77 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.77 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.75 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.74 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.73 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.73 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.72 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.72 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.72 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.72 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.72 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.72 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.72 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.71 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.69 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.69 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.68 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.67 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.66 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.64 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.61 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.6 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.59 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.59 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.59 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.59 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.58 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.58 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.58 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.58 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.58 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.57 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.56 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.56 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.56 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.56 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.55 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.55 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.55 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.55 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.54 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.53 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.53 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.52 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.52 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.52 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.51 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.48 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.48 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.47 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.46 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.45 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.45 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.45 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.45 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.45 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.44 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.43 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.42 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.41 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.37 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.32 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.29 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.24 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.17 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.14 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.12 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.11 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.04 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.01 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 99.01 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.91 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.88 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 98.87 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 98.8 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.79 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.77 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 97.94 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 97.88 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 92.71 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 90.8 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 89.37 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 89.24 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 83.41 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 82.93 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=270.98 Aligned_cols=212 Identities=30% Similarity=0.459 Sum_probs=179.3
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....|.|+|+|++|++|+.+|..|.+||||++++++.....++|+++++++||.|||+|.|.+... ....|.|+|||
T Consensus 14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d 93 (284)
T 2r83_A 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD 93 (284)
T ss_dssp EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence 4456799999999999999999899999999999986544467899999999999999999998643 35799999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCC
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGN 416 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 416 (507)
++.+++|++||++.++|.++..+.....|++|.... .......|+|++.+.|.|
T Consensus 94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~~~~~~~G~i~l~l~~~p---------------------- 147 (284)
T 2r83_A 94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE----KEEQEKLGDICFSLRYVP---------------------- 147 (284)
T ss_dssp CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCS----SCCCCCCCEEEEEEEEET----------------------
T ss_pred CCCCCCCceeEEEEEcchhcccCCcceeEEEeeccc----cccccccccEEEEEEecC----------------------
Confidence 999999999999999999999888888888885421 112346799999998875
Q ss_pred CCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--C---eEEEeeeecCCCCCcccceEEEEecCCCCC-
Q 010550 417 DQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--G---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH- 487 (507)
Q Consensus 417 ~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~- 487 (507)
..+.|.|+|++|+||+.. +.+||||++++. + .+++|+++++|+||+|||.|.|.+......
T Consensus 148 ----------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 217 (284)
T 2r83_A 148 ----------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK 217 (284)
T ss_dssp ----------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGG
T ss_pred ----------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCc
Confidence 245799999999999863 579999999985 2 356999999999999999999999766443
Q ss_pred ceEEEEEEEC----CCCeeeeEe
Q 010550 488 EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 488 ~~L~v~V~d~----~~~~iG~~~ 506 (507)
..|.|+|||+ ++++||++.
T Consensus 218 ~~l~i~V~d~d~~~~~~~iG~~~ 240 (284)
T 2r83_A 218 VQVVVTVLDYDKIGKNDAIGKVF 240 (284)
T ss_dssp EEEEEEEEECCSSSCCCEEEEEE
T ss_pred eEEEEEEEeCCCCCCCcEEEEEE
Confidence 3899999998 689999985
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=264.77 Aligned_cols=211 Identities=29% Similarity=0.473 Sum_probs=170.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....|.|.|+|++|++|+.+|..|.+||||++++.+.....++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d 94 (296)
T 1dqv_A 15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 94 (296)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence 4456799999999999999999999999999999964433457999999999999999999998643 24589999999
Q ss_pred cCCCCCCCeeEEEEEE-CcccCC-CCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCC
Q 010550 337 WDKVGGHDRLGMQLVP-LKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGS 414 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~-l~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~ 414 (507)
+|.+++|++||++.++ +.++.. ......|+++... .......|+|++.+.|.|
T Consensus 95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~-----~~~~~~~G~i~vsl~y~~-------------------- 149 (296)
T 1dqv_A 95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG-----GSEKADLGELNFSLCYLP-------------------- 149 (296)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC-----SSCCSCCCEEEEEEEEET--------------------
T ss_pred cCCCCCCceEEEEEeccccccccCCccceeeeccccc-----cccccccceEEEEEEecc--------------------
Confidence 9999999999999996 444443 2334456665332 112346799999999875
Q ss_pred CCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--C---eEEEeeeecCCCCCcccceEEEEecCCCC
Q 010550 415 GNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--G---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL 486 (507)
Q Consensus 415 ~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~ 486 (507)
..|.|.|+|.+|+||+.. +.+||||++++. + .++||++++++.||+|||.|.|.+.....
T Consensus 150 ------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 217 (296)
T 1dqv_A 150 ------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESV 217 (296)
T ss_dssp ------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGG
T ss_pred ------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHc
Confidence 246799999999999863 568999999996 3 46799999999999999999999876543
Q ss_pred C-ceEEEEEEEC----CCCeeeeEe
Q 010550 487 H-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 487 ~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
. ..|.|+|||+ ++++||+++
T Consensus 218 ~~~~L~i~V~d~d~~~~~~~iG~~~ 242 (296)
T 1dqv_A 218 ENVGLSIAVVDYDCIGHNEVIGVCR 242 (296)
T ss_dssp GSCCCCCEEEECCSSSCCEEEEECC
T ss_pred cCcEEEEEEEeCCCCCCCceEEEEE
Confidence 3 3799999998 678999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=165.04 Aligned_cols=130 Identities=31% Similarity=0.442 Sum_probs=110.0
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC---CCCeEEEEEEEc
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDW 337 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~V~d~ 337 (507)
...|.|+|+|++|++|+..+. |.+||||++++++++ ++|++++++.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 456899999999999999998 999999999999754 6999999999999999999999754 368999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccC
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~ 397 (507)
+..++|++||++.+++.++..+.....|+++....+. ......|+|+++++|.|...
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~---~~~~~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQDTGATIDLVIGYDPPSG 136 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT---TCCEEEEEEEEEEEECCCBS
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC---CCCCCCCEEEEEEEEECCCC
Confidence 9999999999999999999888777778773322222 12356799999999998543
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=165.41 Aligned_cols=128 Identities=31% Similarity=0.505 Sum_probs=110.8
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFD 336 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~V~d 336 (507)
....+.|.|+|+|++|++|+..|..|.+||||+++++++. .+|++++ ++.||.|||+|.|.+.+ ....|.|+|||
T Consensus 4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d 79 (136)
T 1wfj_A 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECC
T ss_pred CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEE
Confidence 3456889999999999999999988999999999998764 5899998 89999999999999987 56799999999
Q ss_pred cCCCCCCCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccC
Q 010550 337 WDKVGGHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~ 397 (507)
++.+++|++||++.++|.++. .+.....|++|.. ..+..|+|+++++|.|...
T Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECCS
T ss_pred CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCCC
Confidence 999999999999999999994 4444566777752 2568899999999999654
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=158.72 Aligned_cols=120 Identities=26% Similarity=0.407 Sum_probs=103.6
Q ss_pred eEEEEEEEEEeccccc---cCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 263 VGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
.|.|+|+|++|++|+. .|..|.+||||++++++.....++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 4899999999999998 4667899999999998754455799999999999999999999976677899999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
. +|++||++.++|.++..+.....|++|. ....|.|+++++..
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~----------~~~~g~i~~~le~~ 124 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVA 124 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECC
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcC----------CCceEEEEEEEEeC
Confidence 7 4899999999999999888888899873 24568888877544
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=164.41 Aligned_cols=129 Identities=33% Similarity=0.519 Sum_probs=101.6
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc---CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d 336 (507)
....|.|+|+|++|++|+.+|..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. ....|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT-TTCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC-CCCEEEEEEEE
Confidence 45679999999999999999988999999999998432 235799999999999999999999976 45789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCce------EEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETK------EFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
++..++|++||++.++|.++..+... ..|++|.... ...+..|+|+++++|.|
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence 99999999999999999999866532 4677764321 12457899999999986
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=166.78 Aligned_cols=119 Identities=27% Similarity=0.330 Sum_probs=102.4
Q ss_pred ccCceEEEEEEEEEeccccccCc----------CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCC
Q 010550 259 IKKPVGILHVKVVRASKLLKKDF----------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQ 328 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~----------~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~ 328 (507)
.....|.|+|+|++|++|+++|. .|.+||||++++++++. .+|+++++|+||+|||+|.|.+.+ .+
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~--~kT~v~~ktlnP~WNE~F~f~v~~--~~ 99 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRV--GQTSTKQKTNKPTYNEEFCANVTD--GG 99 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--EC
T ss_pred hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEee--EEeeecCCCCCCccCcEEEEEcCC--CC
Confidence 34568999999999999998873 26799999999987543 589999999999999999999975 46
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCC----CceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 329 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
.|.|+|||+|.+++|++||++.|++.++..+ .....|++|. +.|+|+++++|.
T Consensus 100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVITLT 156 (157)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEEEC
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEEEE
Confidence 8999999999999999999999999998754 5678888872 379999999874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=160.63 Aligned_cols=117 Identities=24% Similarity=0.353 Sum_probs=100.6
Q ss_pred ceEEEEEEEEEeccccccCcCCC-----------CCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeE
Q 010550 262 PVGILHVKVVRASKLLKKDFLGT-----------SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL 330 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~-----------~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L 330 (507)
..|.|+|+|++|++|+++|..+. +||||++++++.. ..+|+++++|.||+|||+|.|.+.+. +.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L 79 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence 46999999999999998886544 9999999997654 25899999999999999999999764 789
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCCC--ceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 331 ~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
.|+|||+|.+++|++||++.+++.++..+. ....|+++ .+.|+|+++++|.+
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------CCCeEEEEEEEEEe
Confidence 999999999999999999999999998753 33677765 24799999999986
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=159.77 Aligned_cols=126 Identities=35% Similarity=0.516 Sum_probs=107.1
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
....+.|.|+|+|++|++|+..|..|.+||||+++++++. .+|++++++.||.|||+|.|.+.+. .+.|.|+|||+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 4556789999999999999999989999999999998764 5899999999999999999999764 57899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+..++|++||++.+++.++..+.. .|++|... .......|+|+++++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~~--~w~~L~~~-----~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNK-----DLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSCC--EECCCBCS-----CTTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCCc--eEEEeecC-----CCCCccceEEEEEEEEEe
Confidence 998899999999999999977554 56665432 112357899999999864
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=156.96 Aligned_cols=123 Identities=30% Similarity=0.436 Sum_probs=103.3
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
....|.|+|+|++|++|+.+|..|.+||||+++++++. ++|++++++.||.|||+|.|.+..+ .+.|.++|||++.
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~ 88 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD 88 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCC
Confidence 34569999999999999999999999999999997654 5999999999999999999999765 4789999999998
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 340 ~-----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
. ++|++||++.+++.++. .....|++|.... ......|+|+++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT-----DKSAVSGAIRLHISVE 146 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS-----TTCCCCCEEEEEEEEE
T ss_pred CccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC-----CCCCCceEEEEEEEEE
Confidence 5 78999999999999994 3456777775321 1244679999999985
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=163.93 Aligned_cols=130 Identities=32% Similarity=0.498 Sum_probs=100.3
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC---CceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d 336 (507)
....|.|+|+|++|++|+.++..|.+||||++++.+... ..++|++++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d 82 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFD 82 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEE
Confidence 346799999999999999999899999999999985321 34699999999999999999999975 45789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCce-E-----EEEeccccccCCCCCCCccceEEEEEEEEEec
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETK-E-----FTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~ 395 (507)
++.+++|++||++.++|.++...... . .|++|.... ...+..|+|+++++|.|.
T Consensus 83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC-
T ss_pred CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEeC
Confidence 99999999999999999999876433 1 577764321 124578999999999997
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=150.67 Aligned_cols=125 Identities=29% Similarity=0.438 Sum_probs=100.0
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~ 341 (507)
....|+|+|++|++|+.+|..|.+||||++++++.. ..++|+++++|+||.|||+|.|.+.+. +.|.|+|||++..+
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence 347899999999999999999999999999997642 457999999999999999999999764 35999999999887
Q ss_pred C---CCeeEEEEEECcccC-CCCceEEEEeccccccCCCCCCCccceEEEEEEEE
Q 010550 342 G---HDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (507)
Q Consensus 342 ~---d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~ 392 (507)
+ |++||++.+++.++. .......+++|... .+. ...+..|+|++++++
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~~--~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NPS--DTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-STT--CCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CCC--CCCceeEEEEEEEEc
Confidence 6 899999999999883 22333456666442 111 123568999999875
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=157.85 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=95.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC---ccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG---EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~---~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....+.|+|+|++|++|+.+|..|.+||||++++.+ ....++||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 3456789999999999999999999999999999976 332357999999999999999999998642 25689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCC-CCceEEEEecc
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLL 369 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~l~ 369 (507)
|||+|.++++++||++.++|.++.. +.....|++|.
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999999999999999999963 55667787763
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=151.79 Aligned_cols=112 Identities=38% Similarity=0.548 Sum_probs=97.5
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~V~ 335 (507)
.....+.|+|+|++|++|+.+|..|.+||||++++.+.....++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 100 (141)
T 2d8k_A 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100 (141)
T ss_dssp ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence 344678999999999999999989999999999997544446799999999999999999998532 23578999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
|++.+++|++||++.+++.++..+.....|++|..
T Consensus 101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 99999999999999999999998888888998854
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=155.90 Aligned_cols=126 Identities=18% Similarity=0.262 Sum_probs=102.3
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~ 340 (507)
...+.|+|+|++|++|+..+..+.+||||+++++++ .++|+++++|+||+|||+|.|.+. ..+.|.|+|||+|.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~---~~kT~v~~~tlnP~Wne~f~f~v~--~~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ---SKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTE---EEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCE---EeEccccCCCCCCeECCEEEEEeC--CCCEEEEEEEECCCC
Confidence 456899999999999994444455999999999873 469999999999999999999985 378999999999999
Q ss_pred CCCCeeEEEEEECcccCCCC-----ceEEEEeccccccCCCCCCCccceEEEEEEEEEecc
Q 010550 341 GGHDRLGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~ 396 (507)
++|++||++.+++.++..+. ....|++|... ....+..|+|++++.|.+..
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-----~~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEECC
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-----CCCCcccEEEEEEEeeeecc
Confidence 99999999999999986432 12567776543 11346789999999999864
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=151.32 Aligned_cols=111 Identities=33% Similarity=0.434 Sum_probs=98.1
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....+.|+|+|++|++|+..|..+.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 3456799999999999999999889999999999965444567999999999999999999998632 45789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
++.+++|++||++.++|.++..+.....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 999999999999999999999888888898874
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=152.17 Aligned_cols=111 Identities=33% Similarity=0.434 Sum_probs=97.6
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....+.|+|+|++|++|+..|..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 3456789999999999999999889999999999975444457999999999999999999988632 35789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
++.+++|++||++.+++.++..+.....|++|.
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 999999999999999999998888888898874
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=147.86 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=94.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEE-eec--CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~ 333 (507)
.....|.|.|+|++|++|+. +..|.+||||++++.+. ...+++|+++++|+||+|||+|.|. +.. .....|.|+
T Consensus 15 ~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~ 93 (134)
T 2b3r_A 15 VSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS 93 (134)
T ss_dssp EEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred EeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence 34456899999999999997 77889999999999543 3345799999999999999999999 753 245799999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|||++.+++|++||++.++|.++..+.....|++|.
T Consensus 94 V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 94 VLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp EEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred EEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 999999999999999999999999888888899874
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-18 Score=145.67 Aligned_cols=112 Identities=25% Similarity=0.377 Sum_probs=93.9
Q ss_pred ccCceEEEEEEEEEeccccccCcC-CCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEE-eecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~V 334 (507)
.....+.|.|+|++|++|+.+|.. |.+||||++++.+.....++|+++++++||+|||+|.|. +... ....|.|+|
T Consensus 17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 344678999999999999999985 899999999998644456899999999999999999996 5432 346899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCc-eEEEEeccc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLK 370 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~ 370 (507)
||++.+++|++||++.++|.++..+.. ...|+++.+
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 999999999999999999999987643 456677643
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-18 Score=146.80 Aligned_cols=111 Identities=31% Similarity=0.442 Sum_probs=96.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEE-eecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~ 333 (507)
.....+.|.|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|. +... ....|.|+
T Consensus 24 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp EEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 34467899999999999999998899999999999752 2345799999999999999999998 5321 13689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|||++.+++|++||++.+++.++..++...+|++|.
T Consensus 104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 104 VCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred EEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 999999999999999999999999988888888874
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=143.36 Aligned_cols=109 Identities=23% Similarity=0.343 Sum_probs=87.5
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 333 (507)
.....|.|.|+|++|++|+.++..|.+||||++++.+. ....++|+++++|.||+|||+|.|.+.. .....|.|+
T Consensus 13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 34456899999999999999998999999999999542 2345799999999999999999999532 235799999
Q ss_pred EEEcCCCCC--CCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..++ |++||++.+++.++.... ...|++|
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 999999887 999999999999987654 6677765
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=144.36 Aligned_cols=109 Identities=21% Similarity=0.195 Sum_probs=91.9
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc-cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~ 335 (507)
.....+.|+|+|++|++ +|..|.+||||++++.+. ....++|+++++|+||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T 1wfm_A 21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence 44567899999999993 677899999999999542 22347899999999999999999998643 2568999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
|+|.+++|++||++.++|.++..+.....|++|..
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 99999999999999999999986667778888754
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-18 Score=148.88 Aligned_cols=112 Identities=24% Similarity=0.351 Sum_probs=96.4
Q ss_pred ccCceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 333 (507)
.....|.|.|+|++|++|+..+ ..|.+||||++++.+.. ..+++|+++++|.||+|||+|.|.+... ....|.|+
T Consensus 18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 4456799999999999999888 57899999999997543 2357999999999999999999998653 24579999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 334 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
|||++.+++|++||++.++|.++..+.....|++|..
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 134 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG 134 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence 9999999999999999999999987767778888854
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-18 Score=148.30 Aligned_cols=112 Identities=27% Similarity=0.360 Sum_probs=93.5
Q ss_pred ccCceEEEEEEEEEecccccc-Cc------CCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCe
Q 010550 259 IKKPVGILHVKVVRASKLLKK-DF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQI 329 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~-d~------~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~ 329 (507)
.....|.|.|+|++|++|+.. +. .|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....
T Consensus 21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 100 (147)
T 2enp_A 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT 100 (147)
T ss_dssp EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence 445678999999999999984 43 35899999999986444467999999999999999999998632 2468
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 330 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
|.|+|||++.+++|++||++.++|.++........|+.|..
T Consensus 101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 99999999999999999999999999987766667777643
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=144.90 Aligned_cols=107 Identities=35% Similarity=0.501 Sum_probs=93.0
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK 339 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~~ 339 (507)
.+.|+|+|++|++|+..|..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.... ...|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 57899999999999999988999999999997532 34579999999999999999999987532 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
.++|++||++.+++.++..+ ....|++|..
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 99999999999999999876 4677888753
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=165.94 Aligned_cols=177 Identities=23% Similarity=0.315 Sum_probs=135.3
Q ss_pred eeEEEEEcCCCce-EEEEEEEcCccccc-CcchHHHHHHHHHHHhhhcccC-----Ccccee-cccc-------------
Q 010550 195 FATMVVSLMERPH-VDFGIKILGGDIMS-IPGLYQFIQKCITKYVAGIYIW-----PQTYEI-PILD------------- 253 (507)
Q Consensus 195 ~~~~~~sf~~~P~-id~~~~~~g~~i~~-ip~l~~~~~~~i~~~l~~~~v~-----P~~~~~-~l~~------------- 253 (507)
+..|.=|+...|. |++.+.|+ .++.. -+-....++.++.+++.+.-.+ |..-.. ++..
T Consensus 304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t 382 (540)
T 3nsj_A 304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVT 382 (540)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTB
T ss_pred HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCc
Confidence 5666667777885 49999998 55543 4566788999999999887666 421111 1211
Q ss_pred -cccccccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeec-CCCCeEE
Q 010550 254 -ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PESQILQ 331 (507)
Q Consensus 254 -~~~~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~~~L~ 331 (507)
...+......|.|+|+|++|++|+. |..|++||||+++++++. .+|+++++++||+|||+|.|.+.+ ...+.|+
T Consensus 383 ~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~ 458 (540)
T 3nsj_A 383 NQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLR 458 (540)
T ss_dssp CGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEE
T ss_pred ccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEE
Confidence 1112345568999999999999998 989999999999998754 699999999999999999998653 3578899
Q ss_pred EEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 332 v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
|+|||+|..++||+||++.++|.. ..++.|+.+ ..|.|+++++..
T Consensus 459 ~~V~D~D~~~~dD~LG~~~~~L~~----g~~~~~~~l-------------~~G~l~~~~~~~ 503 (540)
T 3nsj_A 459 VQVWDADYGWDDDLLGSCDRSPHS----GFHEVTCEL-------------NHGRVKFSYHAK 503 (540)
T ss_dssp EEEEECCSSSCCEEEEEEEECCCS----EEEEEEEEC-------------SSSEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEeeC----CcEEEEEEc-------------CCeEEEEEEEEE
Confidence 999999999999999999999882 234556653 258888887643
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-18 Score=147.52 Aligned_cols=108 Identities=28% Similarity=0.443 Sum_probs=93.1
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC-----------CceeeeecCCCCCCeEeeEEEEE-ee--cCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLV-VK--EPESQ 328 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~-v~--~~~~~ 328 (507)
.|.|+|+|++|++|+.+|..|.+||||++++.+... ..++|+++++|+||+|||+|.|. +. +....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 589999999999999999999999999999987531 24689999999999999999997 53 22467
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 329 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
.|.|+|||++.+++|++||++.++|.++..+.....|++|..
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 899999999999999999999999999987666778888743
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=145.98 Aligned_cols=111 Identities=29% Similarity=0.306 Sum_probs=92.5
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....+.|.|+|++|++|+.+|..| +||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 97 (142)
T 2dmg_A 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV 97 (142)
T ss_dssp EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence 3445689999999999999999888 9999999996432 2567999999999999999999998532 245899999
Q ss_pred EEcCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 335 FDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 335 ~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
||++.+++ |++||++.++|.++..+.....|++|..
T Consensus 98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~ 135 (142)
T 2dmg_A 98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135 (142)
T ss_dssp EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred EECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence 99998763 5799999999999987766677777754
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=149.04 Aligned_cols=109 Identities=26% Similarity=0.354 Sum_probs=94.4
Q ss_pred ceEEEEEEEEEeccccccCc-CCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 010550 262 PVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~-d~ 337 (507)
..|.|.|+|++|++|+.+|. .|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 46899999999999999985 6899999999997532 235789999999999999999999854 5689999999 99
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccc
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 371 (507)
|.+++|++||++.++|.++..+.....|++|...
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9999999999999999999987788889998643
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=143.46 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=93.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 333 (507)
.....+.|+|+|++|++|+.++..|.+||||++++.+. ....++|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 16 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 95 (141)
T 1v27_A 16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 95 (141)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence 34456899999999999999998999999999998542 2345799999999999999999998532 235799999
Q ss_pred EEEcCCCCC--CCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 334 VFDWDKVGG--HDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 334 V~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
|||++..++ |++||++.++|.++..+. ...|++|..
T Consensus 96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 96 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred EEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 999999887 999999999999987654 778888754
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-17 Score=143.53 Aligned_cols=110 Identities=25% Similarity=0.354 Sum_probs=93.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEee--cCCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~--~~~~~~L~v~V 334 (507)
.....|.|.|+|++|++|+..| .|.+||||++++.+. ....++|+++++|.||+|||+|.|.+. +. ...|.|+|
T Consensus 22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V 99 (153)
T 3fbk_A 22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDD-QKRLLVTV 99 (153)
T ss_dssp EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGT-TSEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHh-CCEEEEEE
Confidence 4556799999999999999998 699999999999543 234579999999999999999999984 33 35699999
Q ss_pred EEcCCCCC-CCeeEEEEEECcccCC-CCceEEEEeccc
Q 010550 335 FDWDKVGG-HDRLGMQLVPLKLLTP-HETKEFTLDLLK 370 (507)
Q Consensus 335 ~d~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~l~~ 370 (507)
||++.+++ |++||++.++|.++.. +.....|++|..
T Consensus 100 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 100 WNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp EECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred EeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 99998876 8999999999999984 677788988854
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=142.02 Aligned_cols=111 Identities=35% Similarity=0.485 Sum_probs=91.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|+++++++||.|||+|.|.+... ....|.|+|
T Consensus 20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 99 (159)
T 1tjx_A 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (159)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence 34567899999999999999998899999999999743 22357999999999999999999998643 246899999
Q ss_pred EEcCCCCCCCeeEEEEEECccc------------CCCCceEEEEecc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLL------------TPHETKEFTLDLL 369 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~l~ 369 (507)
||++.+++|++||++.+++..+ .++.....|++|.
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~ 146 (159)
T 1tjx_A 100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (159)
T ss_dssp EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence 9999999999999999999864 2334556677664
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=139.45 Aligned_cols=99 Identities=32% Similarity=0.460 Sum_probs=85.6
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V 334 (507)
.....|.|.|+|++|++|+..|..|.+||||++++.+. ...+++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 34456899999999999999998899999999999753 223578999999999999999999986433 36899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
||++.+++|++||++.+++.++.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 91 MDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EECCSSSCCEEEEEEEESSSSCH
T ss_pred EECCCCCCCcEEEEEEEccccCC
Confidence 99999999999999999999754
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=141.21 Aligned_cols=99 Identities=34% Similarity=0.456 Sum_probs=86.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....+.|.|+|++|++|+.+|..|.+||||++++.+. ....++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 111 (166)
T 2cm5_A 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 111 (166)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence 44567899999999999999998999999999999863 23457999999999999999999998643 256899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
||++.+++|++||++.+++.++.
T Consensus 112 ~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 112 WDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred EECCCCCCCcEEEeEEEecccCC
Confidence 99999999999999999999863
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=134.57 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=74.1
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
.+.|.|+|+|++|+++.. .|.+||||+++ . +. .+|+++. ++.||.|||+|.|.+.+. ...|.|+|||+|
T Consensus 2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 71 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 71 (131)
T ss_dssp CCCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-
T ss_pred CcceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-
Confidence 356999999999998853 57899999999 2 22 3455544 799999999999999764 457999999999
Q ss_pred CCCCCeeEEEEEECcccCCC
Q 010550 340 VGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~ 359 (507)
.++|++||++.++|.++...
T Consensus 72 ~~~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 72 LIWDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp SSCEEEEEEEEEEGGGSCBC
T ss_pred CCCCCeEEEEEEEHHHhhhc
Confidence 88999999999999998644
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=140.44 Aligned_cols=97 Identities=29% Similarity=0.374 Sum_probs=79.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V 334 (507)
.....+.|.|+|++|++|+..|..|.+||||++++.+. ...+++|+++++++||+|||+|.|.+.... ...|.|+|
T Consensus 25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V 104 (153)
T 1w15_A 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 104 (153)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence 34456899999999999999998899999999999542 223569999999999999999999987542 46899999
Q ss_pred EEcCCCCCCCeeEEEEEECcc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKL 355 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~ 355 (507)
||++.+++|++||++.+++.+
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC
T ss_pred EeCCCCCCCcEEEEEEECCCC
Confidence 999999999999999999988
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-16 Score=130.83 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=100.8
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE--SQILQLQVFDWDK 339 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~--~~~L~v~V~d~~~ 339 (507)
.-.|+|+|.+|.+|+ |++|||+++.+.+.+ ++|++++ ++.||+|||.|.+.+..+. +..|.+.|||+++
T Consensus 20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp CEEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred cEEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 347999999999998 578999999997654 6999998 6999999999999987543 6789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEecc
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~ 396 (507)
++++++||++.++|+++...+....+..|... .+....++|.++++|.|..
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~------n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD------NNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSEEEEEEEEECT------TSCEEEEEEEEEEEEEETT
T ss_pred ccCCCEEEEEEEEhHHhccCCeEEEeecccCC------CCCccccEEEEEEEecCCC
Confidence 99999999999999999987766666655432 2244568999999999953
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=162.92 Aligned_cols=122 Identities=26% Similarity=0.407 Sum_probs=103.5
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
....|.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|+||.|||+|.|.+..+....|.|+|||+|.
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 34578999999999999999999999999999997654 699999999999999999999987777889999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCc----eEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 340 VGGHDRLGMQLVPLKLLTPHET----KEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+++|++||++.+++.++..+.. ...|+++. ....|+|++++.+.-
T Consensus 460 ~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~l~l 508 (510)
T 3jzy_A 460 FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFDLQL 508 (510)
T ss_dssp SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEEEEE
T ss_pred CCCCCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEEEEE
Confidence 9999999999999999976433 45666652 346799998887653
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=128.25 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=79.8
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCCCCCCcEEEEEEc---
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYK--- 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~--- 456 (507)
....|+|++++.|.+ ..+.|.|+|++|++....+.+||||++++.
T Consensus 9 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~ 56 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDC--------------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRT 56 (138)
T ss_dssp CSSCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETT
T ss_pred CCcceEEEEEEEEeC--------------------------------CCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCC
Confidence 456799999999985 246799999999976666789999999994
Q ss_pred Ce-EEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 GD-KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
++ ++||+++++|+||+|||.|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 57 ~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~ 112 (138)
T 1wfm_A 57 GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELR 112 (138)
T ss_dssp EEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEE
T ss_pred CcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEE
Confidence 22 4699999999999999999999876543 35899999998 689999985
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=133.22 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=74.5
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
.+.+.|+|+|++|+++. ..|.+||||+++ . +. .+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+|
T Consensus 11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 80 (167)
T 2cjs_A 11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 80 (167)
T ss_dssp SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence 35789999999999884 258899999999 2 22 3566655 699999999999999864 457999999999
Q ss_pred CCCCCeeEEEEEECcccCCC
Q 010550 340 VGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~ 359 (507)
+++|++||++.++|.++...
T Consensus 81 ~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 81 LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp SSCCEEEEEEEEEGGGSCBC
T ss_pred CCCCceEEEEEEEHHHhccc
Confidence 88999999999999998643
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=132.13 Aligned_cols=95 Identities=27% Similarity=0.348 Sum_probs=80.0
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----------CCCCc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----------NHNNP 449 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----------~~~dP 449 (507)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||
T Consensus 9 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dp 56 (147)
T 2enp_A 9 KYQLGMLHFSTQYDL--------------------------------LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNP 56 (147)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCC
T ss_pred CCcceEEEEEEEEcC--------------------------------CCCEEEEEEEEEeCCCCccccccccccCCCCCc
Confidence 457899999999986 346799999999999863 36999
Q ss_pred EEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 450 YAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 450 yv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
||++++.. ++++|++++++.||+|||+|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 57 yv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~ 121 (147)
T 2enp_A 57 YVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121 (147)
T ss_dssp EEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEE
T ss_pred EEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEE
Confidence 99999963 56799999999999999999998864322 24899999998 678999985
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-15 Score=131.47 Aligned_cols=95 Identities=27% Similarity=0.490 Sum_probs=80.2
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 8 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~ 55 (159)
T 1tjx_A 8 LEKLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 55 (159)
T ss_dssp GGCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred cCcCCeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEE
Confidence 456899999999987 346799999999999864 479999999996
Q ss_pred C-----eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 G-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+ .+++|+++++|+||+|||.|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 56 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~ 115 (159)
T 1tjx_A 56 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 115 (159)
T ss_dssp ETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEE
T ss_pred eCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEE
Confidence 3 35699999999999999999999875433 24899999998 688999985
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=131.42 Aligned_cols=95 Identities=22% Similarity=0.382 Sum_probs=79.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC--CCCCcEEEEEEc-
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE--NHNNPYAIILYK- 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~--~~~dPyv~v~~~- 456 (507)
....|++.++++|.+ ..+.|.|+|.+|+||+.. +.+||||++++.
T Consensus 10 ~~~~G~~~lsL~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~ 57 (153)
T 3fbk_A 10 HKVQGAGQLRLSIDA--------------------------------QDRVLLLHIIEGKGLISKQPGTCDPYVKISLIP 57 (153)
T ss_dssp ---CCCCEEEEEEEE--------------------------------SSSEEEEEEEEEESCCCCSSSCCCEEEEEEEES
T ss_pred cCCCCEEEEEEEEEC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEc
Confidence 567899999999998 356799999999999864 579999999993
Q ss_pred ----CeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----C-CCeeeeEe
Q 010550 457 ----GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----R-TGVIGACG 506 (507)
Q Consensus 457 ----~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~-~~~iG~~~ 506 (507)
..+++|+++++|.||+|||.|.|.+........|.|+|||. . +++||++.
T Consensus 58 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~ 116 (153)
T 3fbk_A 58 EDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMS 116 (153)
T ss_dssp CSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEE
T ss_pred CCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEE
Confidence 34679999999999999999999985444456799999998 3 78999985
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-15 Score=131.80 Aligned_cols=95 Identities=28% Similarity=0.503 Sum_probs=81.2
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 20 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~ 67 (166)
T 2cm5_A 20 IEERGKILVSLMYST--------------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK 67 (166)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred cCccceEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEE
Confidence 456899999999986 246799999999999864 579999999997
Q ss_pred C-----eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 G-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+ .+++|+++++|+||+|||.|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 68 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~ 127 (166)
T 2cm5_A 68 PDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQ 127 (166)
T ss_dssp TC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEE
T ss_pred CCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEE
Confidence 6 56799999999999999999999975433 35999999998 578999985
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-15 Score=129.17 Aligned_cols=95 Identities=26% Similarity=0.385 Sum_probs=77.3
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 13 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 60 (153)
T 1w15_A 13 PSGRGELLVSLCYQS--------------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY 60 (153)
T ss_dssp ---CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEE
T ss_pred CccccEEEEEEEEcC--------------------------------CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEE
Confidence 446799999999987 246799999999999863 578999999994
Q ss_pred --Ce---EEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 457 --GD---KKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 --~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
+. ++||+++++|+||+|||+|.|.+...... ..|.|+|||+ ++++||++.
T Consensus 61 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~ 120 (153)
T 1w15_A 61 HAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLV 120 (153)
T ss_dssp ETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEE
T ss_pred eCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEE
Confidence 33 56999999999999999999999776443 5899999998 678999985
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=126.53 Aligned_cols=95 Identities=24% Similarity=0.399 Sum_probs=79.7
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~ 455 (507)
....|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++
T Consensus 5 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~ 52 (138)
T 1ugk_A 5 SSGLGTLFFSLEYNF--------------------------------ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI 52 (138)
T ss_dssp CCCCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEE
T ss_pred CCccEEEEEEEEEEC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEE
Confidence 456799999999986 246799999999999863 46899999999
Q ss_pred cC---eEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 456 KG---DKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 456 ~~---~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+ ++++|+++++|.||+|||.|.|. +..... ...|.|+|||+ ++++||++.
T Consensus 53 ~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~ 112 (138)
T 1ugk_A 53 LPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVL 112 (138)
T ss_dssp ETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEE
T ss_pred ecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEE
Confidence 63 67899999999999999999995 654332 34899999997 688999985
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=134.68 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=79.1
Q ss_pred ccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC
Q 010550 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG 457 (507)
Q Consensus 381 ~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~ 457 (507)
...|+|++++.|.+ ..+.|.|+|++|+||+.+ +.+||||++++.+
T Consensus 27 ~~~G~l~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~ 74 (155)
T 2z0u_A 27 VGATRIQIALKYDE--------------------------------KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLP 74 (155)
T ss_dssp -CCEEEEEEEEEET--------------------------------TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEES
T ss_pred CCcEEEEEEEEEcC--------------------------------CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEec
Confidence 46799999999986 246799999999999863 5799999999965
Q ss_pred ---e---EEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---D---KKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
. ++||+++++|+||+|||+|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 75 ~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~ 134 (155)
T 2z0u_A 75 CSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQ 134 (155)
T ss_dssp CSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEE
Confidence 2 6799999999999999999999865322 34899999997 678999985
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-15 Score=129.27 Aligned_cols=95 Identities=22% Similarity=0.408 Sum_probs=80.7
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~----~~~~dPyv~v~~ 455 (507)
...+|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++
T Consensus 6 ~~~~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l 53 (148)
T 3fdw_A 6 IFVTGRIAFSLKYEQ--------------------------------QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYL 53 (148)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEE
T ss_pred CccceEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEE
Confidence 456899999999986 35679999999999985 356999999999
Q ss_pred c-----CeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 456 K-----GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 456 ~-----~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
. ..+++|+++++|+||+|||.|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 54 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~ 114 (148)
T 3fdw_A 54 LPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAE 114 (148)
T ss_dssp ETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEE
T ss_pred EcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEE
Confidence 6 347799999999999999999999876543 34799999998 688999985
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-15 Score=127.39 Aligned_cols=92 Identities=30% Similarity=0.506 Sum_probs=78.5
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG-- 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-- 457 (507)
+|+|.+++.|.+ ..+.|.|+|.+|+||+.. +.+||||++++.+
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~ 49 (138)
T 3n5a_A 2 RGELLLSLCYNP--------------------------------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKD 49 (138)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETT
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCC
Confidence 699999999986 346799999999999874 4799999999964
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++|++++++.||+|||.|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 50 ~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~ 106 (138)
T 3n5a_A 50 KRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIY 106 (138)
T ss_dssp EEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEE
T ss_pred CccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEE
Confidence 35699999999999999999999876533 24899999998 578999985
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-15 Score=125.74 Aligned_cols=93 Identities=25% Similarity=0.459 Sum_probs=77.6
Q ss_pred cceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEE---
Q 010550 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY--- 455 (507)
Q Consensus 382 ~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~--- 455 (507)
..|+|.+++.|.+ ..+.|.|+|.+|+||+.. +.+||||++++
T Consensus 3 ~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~ 50 (129)
T 2bwq_A 3 LSGQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD 50 (129)
T ss_dssp CCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS
T ss_pred eeEEEEEEEEEcc--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecC
Confidence 4699999999986 246799999999999874 46899999999
Q ss_pred --cCeEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC----C--CCeeeeEe
Q 010550 456 --KGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK----R--TGVIGACG 506 (507)
Q Consensus 456 --~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~----~--~~~iG~~~ 506 (507)
+..+++|+++++|.||+|||.|.|.+.... ....|.|+|||+ + +++||++.
T Consensus 51 ~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~ 111 (129)
T 2bwq_A 51 RSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEIL 111 (129)
T ss_dssp CSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEE
T ss_pred CCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEE
Confidence 456789999999999999999999963321 235899999998 3 88999985
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-15 Score=159.81 Aligned_cols=108 Identities=28% Similarity=0.453 Sum_probs=97.8
Q ss_pred CceEEEEEEEEEeccccc---cCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 261 KPVGILHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~---~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
.+.|.|+|+|++|++|+. +|..|.+||||++++.+....+++|+++++++||+|||+|.|.+.....+.|+|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 467999999999999998 88889999999999987544567999999999999999999999876778999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
|.++ |++||++.++|.++..+.....|++|.
T Consensus 95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp CSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 9998 999999999999998887777888874
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-15 Score=129.81 Aligned_cols=95 Identities=25% Similarity=0.368 Sum_probs=79.5
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 25 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~ 72 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72 (152)
T ss_dssp -CCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred CCCceEEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEE
Confidence 346799999999986 246799999999999864 578999999994
Q ss_pred ---CeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ---~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++||++++++.||+|||.|.|.+..... ...|.|+|||+ ++++||++.
T Consensus 73 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~ 130 (152)
T 1rsy_A 73 PDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK 130 (152)
T ss_dssp TTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEE
T ss_pred cCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEE
Confidence 457799999999999999999998864322 46899999998 688999985
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=124.99 Aligned_cols=95 Identities=24% Similarity=0.386 Sum_probs=78.5
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 9 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 56 (141)
T 2d8k_A 9 RENLGRIQFSVGYNF--------------------------------QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLL 56 (141)
T ss_dssp CCCCCEEEEEEEECS--------------------------------SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEE
T ss_pred CceeeEEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEE
Confidence 446899999999986 235699999999999874 479999999995
Q ss_pred ---CeEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC----CCCeeeeEe
Q 010550 457 ---GDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ---~~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
..++||++++++.||+|||.|.|.+.... ....|.|+|||+ ++++||++.
T Consensus 57 ~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~ 115 (141)
T 2d8k_A 57 PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVS 115 (141)
T ss_dssp SCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEE
T ss_pred CCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEE
Confidence 35779999999999999999999853221 235899999998 678999985
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=126.86 Aligned_cols=95 Identities=24% Similarity=0.442 Sum_probs=78.8
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEE-
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY- 455 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~- 455 (507)
+...|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++
T Consensus 4 ~~~~G~i~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~ 51 (141)
T 1v27_A 4 GSSGGQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFL 51 (141)
T ss_dssp CCCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCS
T ss_pred CCcccEEEEEEEEeC--------------------------------CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEe
Confidence 456899999999986 246799999999999864 46899999999
Q ss_pred ----cCeEEEeeeecCCCCCcccceEEEEecCC-C-CCceEEEEEEEC----C--CCeeeeEe
Q 010550 456 ----KGDKKRTKMIRKTRDPAWNEEFQFMLDEP-P-LHEKIHIEVMSK----R--TGVIGACG 506 (507)
Q Consensus 456 ----~~~~~kT~v~~~t~nP~wnE~f~f~v~~~-~-~~~~L~v~V~d~----~--~~~iG~~~ 506 (507)
+.++++|+++++|+||+|||.|.|.+... . ....|.|+|||+ . +++||++.
T Consensus 52 ~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~ 114 (141)
T 1v27_A 52 PDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEIL 114 (141)
T ss_dssp SCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEE
T ss_pred cCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEE
Confidence 34567999999999999999999995322 1 235899999998 3 89999985
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-15 Score=128.03 Aligned_cols=95 Identities=25% Similarity=0.444 Sum_probs=78.4
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|.+++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 12 ~~~~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~ 59 (142)
T 2chd_A 12 ATTLGALEFSLLYDQ--------------------------------DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL 59 (142)
T ss_dssp --CCCEEEEEEEEEG--------------------------------GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEE
T ss_pred CCccceEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEE
Confidence 456799999999986 346799999999999874 478999999997
Q ss_pred C-----eEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 457 G-----DKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~-----~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+ .++||++++++.||+|||.|.|. +..... ...|.|+|||+ ++++||++.
T Consensus 60 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~ 120 (142)
T 2chd_A 60 PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120 (142)
T ss_dssp SCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEE
Confidence 5 67899999999999999999998 543211 25899999998 578999985
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=126.97 Aligned_cols=94 Identities=18% Similarity=0.391 Sum_probs=77.6
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|++++.|.+ ..+.|.|+|++|+||+.. + +||||++++.
T Consensus 7 ~~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~ 53 (142)
T 2dmg_A 7 GSPLGQIQLTIRHSS--------------------------------QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLL 53 (142)
T ss_dssp SCSSCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEE
T ss_pred CCCcceEEEEEEEeC--------------------------------CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEE
Confidence 456899999999986 246799999999999863 5 9999999994
Q ss_pred C-----eEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----C--CCeeeeEe
Q 010550 457 G-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----R--TGVIGACG 506 (507)
Q Consensus 457 ~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~--~~~iG~~~ 506 (507)
. .+++|+++++|+||+|||.|.|.+..... ...|.|+|||+ . +++||++.
T Consensus 54 ~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~ 115 (142)
T 2dmg_A 54 PDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVL 115 (142)
T ss_dssp SCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEE
T ss_pred cCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEE
Confidence 3 56799999999999999999999854322 24899999998 2 36999985
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=127.32 Aligned_cols=94 Identities=27% Similarity=0.398 Sum_probs=79.6
Q ss_pred ccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEE--
Q 010550 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY-- 455 (507)
Q Consensus 381 ~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~-- 455 (507)
...|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++
T Consensus 18 ~~~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~ 65 (143)
T 3f04_A 18 EKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP 65 (143)
T ss_dssp CCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEES
T ss_pred cCeEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEEC
Confidence 45799999999986 346799999999999874 47999999999
Q ss_pred -cCeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 456 -KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 456 -~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+.++++|+++++|.||+|||+|.|.+..... +..|.|+|||+ ++++||++.
T Consensus 66 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~ 122 (143)
T 3f04_A 66 DKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK 122 (143)
T ss_dssp CCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEE
T ss_pred CCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEE
Confidence 4457899999999999999999999865321 36899999998 678999985
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=125.63 Aligned_cols=78 Identities=27% Similarity=0.520 Sum_probs=67.6
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEEcC-----eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILYKG-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--- 497 (507)
+.|.|+|++|+||+.. +.+||||++++.+ .++||++++++.||+|||+|.|.+........|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 110 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 110 (149)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCC
Confidence 4599999999999864 4789999999973 5679999999999999999999997654446899999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
++++||++.
T Consensus 111 ~~~~~iG~~~ 120 (149)
T 1a25_A 111 SRNDFMGSLS 120 (149)
T ss_dssp SCCEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 678999985
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=123.20 Aligned_cols=80 Identities=28% Similarity=0.557 Sum_probs=71.3
Q ss_pred CceEEEEEEeeeecCCCC--CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC----C
Q 010550 427 GAGLLSVLVQGAEDVEGE--NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK----R 498 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~--~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~----~ 498 (507)
..|.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|.|.+..+. ....|.|+|||+ +
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~ 84 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence 568999999999999864 47999999999999999999999999999999999997653 246999999998 6
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 85 ~~~lG~~~ 92 (140)
T 2dmh_A 85 NKLIGTAT 92 (140)
T ss_dssp CCCCEEEE
T ss_pred CceEEEEE
Confidence 78999985
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=121.24 Aligned_cols=78 Identities=26% Similarity=0.514 Sum_probs=69.4
Q ss_pred ceEEEEEEeeeecCCCC------CCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-
Q 010550 428 AGLLSVLVQGAEDVEGE------NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK- 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~------~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~- 497 (507)
+|.|.|+|++|+||+.. +.+||||++++++ ++++|++++++.||+|||.|.|.+..+ ....|.|+|||+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence 67899999999999972 6899999999986 678999999999999999999999765 357999999998
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
++++||++.
T Consensus 81 ~~~~~~iG~~~ 91 (126)
T 1rlw_A 81 YVMDETLGTAT 91 (126)
T ss_dssp SSCCEEEEEEE
T ss_pred CCCCceeEEEE
Confidence 688999985
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=136.75 Aligned_cols=95 Identities=39% Similarity=0.572 Sum_probs=82.8
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEEEEc
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDW 337 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V~d~ 337 (507)
..+.|.|+|++|++|+.+|..|.+||||++++.+ ....+++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 227 (284)
T 2r83_A 148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 227 (284)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence 4588999999999999999899999999999853 2334578999999999999999999986433 45799999999
Q ss_pred CCCCCCCeeEEEEEECccc
Q 010550 338 DKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l 356 (507)
+.+++|++||++.+++..+
T Consensus 228 d~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 228 DKIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp CSSSCCCEEEEEEEETTCC
T ss_pred CCCCCCcEEEEEEECCCCC
Confidence 9999999999999999864
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=122.15 Aligned_cols=79 Identities=23% Similarity=0.528 Sum_probs=71.2
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----C
Q 010550 426 SGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----R 498 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~ 498 (507)
...|.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|.|.+.++ .+.|.|+|||+ +
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~~~~ 87 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDGDKP 87 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEETTEE
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCCCCC
Confidence 4679999999999999864 5799999999999999999999999999999999999865 47899999998 5
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 88 ~~~lG~~~ 95 (133)
T 2ep6_A 88 PDFLGKVA 95 (133)
T ss_dssp EEECCBCE
T ss_pred CCeeEEEE
Confidence 78999874
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=125.97 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=68.5
Q ss_pred CCceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEE
Q 010550 426 SGAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIH 491 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~-------------~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~ 491 (507)
...|.|+|+|.+|+||+.+ +.+||||++.+++++ .||+++++|+||+|||.|+|.+.+. ..|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~---~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC---CEEE
Confidence 4679999999999999853 358999999999876 5999999999999999999998653 6899
Q ss_pred EEEEEC----CCCeeeeEe
Q 010550 492 IEVMSK----RTGVIGACG 506 (507)
Q Consensus 492 v~V~d~----~~~~iG~~~ 506 (507)
|+|||+ .|++||++.
T Consensus 103 ~~V~D~d~~~~dd~iG~~~ 121 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCT 121 (157)
T ss_dssp EEEEECCSSSSCEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEE
Confidence 999998 588999985
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=148.75 Aligned_cols=123 Identities=22% Similarity=0.378 Sum_probs=100.4
Q ss_pred ceEEEEEEEEEeccccccCc--CCCCCcEEEEEEcCc--cCCceeeeecCCC-CCCeEeeEEEEEeecCCCCeEEEEEEE
Q 010550 262 PVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFD 336 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~L~v~V~d 336 (507)
..+.|+|+|++|++|+..+. .+.+||||++.+.+. ...+++|++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 57899999999999999874 688999999999653 2235789999987 999999999999987766799999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCC-ccceEEEEEEEEE
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM-KQRGKIVVELTYV 393 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~G~i~l~l~~~ 393 (507)
+|.+++|++||++.++|..+..+. .+++|... .+. -..|.|.+++.|.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~------~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK------NGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECT------TSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCC------CcCCCCceEEEEEEEEE
Confidence 999999999999999999998752 35665321 112 2468888888774
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-14 Score=120.68 Aligned_cols=79 Identities=22% Similarity=0.498 Sum_probs=71.2
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeec-CCCCCcccceEEEEecCCCCCceEEEEEEEC----
Q 010550 426 SGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---- 497 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---- 497 (507)
...|.|.|+|++|+||+.. +.+||||++++++++++|++++ ++.||+|||.|.|.+... .+.|.|+|||+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~l~~~V~d~~~~~ 84 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDVGT 84 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSSCT
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCC--CCEEEEEEEECCCCC
Confidence 3679999999999999874 4799999999999999999998 899999999999999863 57999999998
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 85 ~d~~lG~~~ 93 (136)
T 1wfj_A 85 EDDAVGEAT 93 (136)
T ss_dssp TTCCSEEEE
T ss_pred CCceEEEEE
Confidence 689999985
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=124.33 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=65.4
Q ss_pred eEEEEEEeeeecCCCC----CCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEE-EC-
Q 010550 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVM-SK- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~----~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~-d~- 497 (507)
+.|.|+|++|+||+.. +.+||||++++.+. ++||+++++|+||+|||+|.|.+... ...|.|+|| |+
T Consensus 30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~L~~~V~~d~d 107 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ--GKVLQVIVWGDYG 107 (171)
T ss_dssp TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT--TEEEEEEEEEECS
T ss_pred CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC--CCEEEEEEEEcCC
Confidence 4699999999999853 57999999999642 67999999999999999999998543 579999999 87
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
++++||++.
T Consensus 108 ~~~~d~~iG~~~ 119 (171)
T 2q3x_A 108 RMDHKCFMGVAQ 119 (171)
T ss_dssp TTCSSEEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 678999985
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=119.25 Aligned_cols=80 Identities=24% Similarity=0.459 Sum_probs=70.5
Q ss_pred CCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEECC---
Q 010550 425 LSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR--- 498 (507)
Q Consensus 425 ~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~~--- 498 (507)
....|.|.|+|++|+||+.. +.+||||++++++++++|+++++|.||.|||.|.|.+..+ .+.|.++|||++
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~ 90 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDI 90 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSH
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCc
Confidence 33579999999999999874 5799999999999999999999999999999999999876 478999999982
Q ss_pred ------------CCeeeeEe
Q 010550 499 ------------TGVIGACG 506 (507)
Q Consensus 499 ------------~~~iG~~~ 506 (507)
+++||++.
T Consensus 91 ~~~~~~~~~~~~~~~lG~~~ 110 (148)
T 3kwu_A 91 KSRVKQRFKRESDDFLGQTI 110 (148)
T ss_dssp HHHHHTTTSSCSSEEEEEEE
T ss_pred cccccccccCCCCccEEEEE
Confidence 67999875
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=119.42 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=66.6
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEE-----cCeEEEeeeecCCCCCcccceEEEE-ecCCC-CCceEEEEEEEC-
Q 010550 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILY-----KGDKKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSK- 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~--~~~~dPyv~v~~-----~~~~~kT~v~~~t~nP~wnE~f~f~-v~~~~-~~~~L~v~V~d~- 497 (507)
.+.|.|+|.+|+||+. .+.+||||++++ ...++||+++++|+||+|||+|.|. +.... ....|.|+|||+
T Consensus 19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence 4679999999999986 357999999999 3456799999999999999999999 75432 235899999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
++++||++.
T Consensus 99 ~~~~~~~lG~~~ 110 (134)
T 2b3r_A 99 SLRENFFLGGIT 110 (134)
T ss_dssp SSSCCEEEEEEE
T ss_pred CCCCCcEEEEEE
Confidence 578999985
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-14 Score=124.00 Aligned_cols=92 Identities=18% Similarity=0.407 Sum_probs=76.1
Q ss_pred ccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC
Q 010550 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG 457 (507)
Q Consensus 381 ~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~ 457 (507)
...|+|++++.|.. |.|.|+|++|+||+.. +.+||||++++.+
T Consensus 4 ~~~G~i~~~l~y~~----------------------------------~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~ 49 (142)
T 1rh8_A 4 PITGEIQLQINYDL----------------------------------GNLIIHILQARNLVPRDNNGYSDPFVKVYLLP 49 (142)
T ss_dssp CCCCEEEEEEEEET----------------------------------TEEEEEEEEEESCCCCSSSSCSCCEEEEEETT
T ss_pred CcceEEEEEEEEcC----------------------------------CEEEEEEEEecCCCCCCCCCCCCceEEEEEec
Confidence 46899999998871 3599999999999874 5799999999986
Q ss_pred e--------------EEEeeeecCCCCCcccceEEEE-ecCCC-CCceEEEEEEEC----CCCeeeeEe
Q 010550 458 D--------------KKRTKMIRKTRDPAWNEEFQFM-LDEPP-LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ~--------------~~kT~v~~~t~nP~wnE~f~f~-v~~~~-~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
. ++||+++++|+||+|||.|.|. +.... ....|.|+|||+ ++++||++.
T Consensus 50 ~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~ 118 (142)
T 1rh8_A 50 GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118 (142)
T ss_dssp SSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEE
Confidence 3 4699999999999999999997 54221 245899999997 578999985
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=115.94 Aligned_cols=76 Identities=22% Similarity=0.476 Sum_probs=66.6
Q ss_pred ceEEEEEEeeeecCCCC---CCCCcEEEEEEcC--eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---C-
Q 010550 428 AGLLSVLVQGAEDVEGE---NHNNPYAIILYKG--DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---R- 498 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~- 498 (507)
...|.|+|++|++|+.. +.+||||++++++ +.++|+++++|+||+|||.|.|.+... +.|.|+|||+ .
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~~~~ 80 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKKIHK 80 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGGTTS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCCCCC
Confidence 45799999999999864 5799999999975 678999999999999999999999775 4599999998 2
Q ss_pred ---CCeeeeEe
Q 010550 499 ---TGVIGACG 506 (507)
Q Consensus 499 ---~~~iG~~~ 506 (507)
|++||++.
T Consensus 81 ~~~d~~lG~~~ 91 (132)
T 3pyc_A 81 KQGAGFLGCVR 91 (132)
T ss_dssp STTTTEEEEEE
T ss_pred CCCCCceEEEE
Confidence 79999985
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=119.19 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=67.4
Q ss_pred CceEEEEEEeeeecCCCCC--------------CCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEE
Q 010550 427 GAGLLSVLVQGAEDVEGEN--------------HNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIH 491 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~--------------~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~ 491 (507)
..|.|.|+|++|+||+..+ .+||||++++++.+ .+|+++++|+||+|||.|+|.+... +.|.
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence 4689999999999998632 29999999998876 5999999999999999999998754 7899
Q ss_pred EEEEEC----CCCeeeeEe
Q 010550 492 IEVMSK----RTGVIGACG 506 (507)
Q Consensus 492 v~V~d~----~~~~iG~~~ 506 (507)
++|||+ +|++||++.
T Consensus 81 ~~V~d~d~~~~dd~iG~~~ 99 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCT 99 (136)
T ss_dssp EEEEECCSSSSCEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEEEE
Confidence 999998 588999985
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=118.97 Aligned_cols=79 Identities=23% Similarity=0.463 Sum_probs=67.0
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC------eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEE
Q 010550 426 SGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMS 496 (507)
Q Consensus 426 ~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d 496 (507)
...+.|.|+|++|+||+.. +.+||||++++.+ .+++|++++++.||+|||.|.|.+... ...|.|+|||
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~l~~~V~d 94 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ--QHRLLFEVFD 94 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT--TCEEEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC--CCEEEEEEEE
Confidence 4678999999999999864 4799999999974 467999999999999999999999864 4789999999
Q ss_pred C----CCCeeeeEe
Q 010550 497 K----RTGVIGACG 506 (507)
Q Consensus 497 ~----~~~~iG~~~ 506 (507)
+ ++++||++.
T Consensus 95 ~d~~~~d~~iG~~~ 108 (153)
T 3b7y_A 95 ENRLTRDDFLGQVD 108 (153)
T ss_dssp CCSSSCCEEEEEEE
T ss_pred CCCCcCCCeeEEEE
Confidence 8 678999985
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=121.30 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=68.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
..+.|.|+|.+|++|+.+ +.+||||+++++++++||+++++|+||+|||.|.|.+.. .+.|.|+|||+ ++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~~~~d 110 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKSD 110 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSCC
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCCCCCC
Confidence 568899999999999832 359999999999988999999999999999999999842 57999999998 67
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 111 d~lG~~~ 117 (173)
T 2nq3_A 111 VLLGTAA 117 (173)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 8999985
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-14 Score=139.91 Aligned_cols=97 Identities=35% Similarity=0.539 Sum_probs=84.8
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEEEE
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFD 336 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V~d 336 (507)
...|.|+|+|++|++|+.+|..|.+||||++++.+ ....+++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 149 ~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 228 (296)
T 1dqv_A 149 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228 (296)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred cccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEe
Confidence 35689999999999999999999999999999973 3345679999999999999999999886432 4579999999
Q ss_pred cCCCCCCCeeEEEEEECcccC
Q 010550 337 WDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~ 357 (507)
++.+++|++||++.+++.++.
T Consensus 229 ~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 229 YDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp CCSSSCCEEEEECCCSSCTTC
T ss_pred CCCCCCCceEEEEEECCccCC
Confidence 999999999999999998774
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=121.21 Aligned_cols=78 Identities=24% Similarity=0.444 Sum_probs=67.5
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcC------eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG------DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~------~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
..|.|.|+|++|+||+.. +.+||||++++++ ++++|+++++++||+|||.|.|.+... ...|.|+|||+
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~L~~~V~d~ 83 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ--RHRILFEVFDE 83 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT--TCEEEEEEEEC
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC--CCEEEEEEEEC
Confidence 679999999999999863 5799999999976 567999999999999999999999854 46899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
++++||++.
T Consensus 84 d~~~~d~~lG~~~ 96 (176)
T 3m7f_B 84 NRLTRDDFLGQVD 96 (176)
T ss_dssp C----CEEEEEEE
T ss_pred CCCCCCcEEEEEE
Confidence 678999985
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=115.43 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=63.5
Q ss_pred CceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeec-CCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCee
Q 010550 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVI 502 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~i 502 (507)
..+.|.|+|++|++++..+.+||||+++ +++.||++++ ++.||+|||.|.|.+... ...|.|+|||+ +|++|
T Consensus 3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d~~~dd~i 78 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTMV 78 (131)
T ss_dssp CCEEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECCSSCEEEE
T ss_pred cceEEEEEEEEeECCCCCCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECCCCCCCeE
Confidence 3578999999999997667899999999 3344555554 799999999999999864 46899999998 68899
Q ss_pred eeEe
Q 010550 503 GACG 506 (507)
Q Consensus 503 G~~~ 506 (507)
|++.
T Consensus 79 G~~~ 82 (131)
T 2cjt_A 79 GTVW 82 (131)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-14 Score=150.67 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=22.4
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCC---CCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKN---LNPEWNENFKLVVKEPESQILQLQVFDW 337 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t---~nP~Wne~f~f~v~~~~~~~L~v~V~d~ 337 (507)
...|.|+|+|++|++|+++| ||||++++++... .||+++++| .||.|||+|.|.+... ...|.++|||+
T Consensus 8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~ 79 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRD 79 (483)
T ss_dssp EEEECC----------------------------------------------------CCEECC----------------
T ss_pred eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEec
Confidence 34689999999999999876 9999999987543 589999999 9999999999987543 57899999995
Q ss_pred -C---CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCC-----------------CCCCCccceEEEEEEEEEecc
Q 010550 338 -D---KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS-----------------DPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 338 -~---~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~G~i~l~l~~~p~~ 396 (507)
| +.++|++||++.+++.++..+.....|++|....... ..++....|.|++++.|.+..
T Consensus 80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 80 SDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp ---------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred CCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence 4 3678999999999999999877778888874322100 001123569999999998754
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-13 Score=118.03 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=63.8
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeec-CCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeee
Q 010550 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIG 503 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG 503 (507)
.+.|.|+|++|++++..+.+||||+++ +++.||++++ ++.||+|||.|.|.+... ...|.|+|||+ .|++||
T Consensus 13 ~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d~~~dd~iG 88 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTMVG 88 (167)
T ss_dssp CCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECCSSCCEEEE
T ss_pred eEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECCCCCCceEE
Confidence 468999999999997667899999999 3445676665 699999999999999864 46899999998 789999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 89 ~~~ 91 (167)
T 2cjs_A 89 TVW 91 (167)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=108.09 Aligned_cols=75 Identities=15% Similarity=0.326 Sum_probs=67.6
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeec-CCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeee
Q 010550 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIG 503 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG 503 (507)
.|+|.|.+|.+|++ .+|||+++++.+.++||++++ .+.||+|||.|+|.+..+.. ++.|.|+|+|. ++++||
T Consensus 22 sL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG 99 (144)
T 3l9b_A 22 ALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIG 99 (144)
T ss_dssp EEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEE
T ss_pred EEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEE
Confidence 59999999999996 699999999999999999998 59999999999999987533 34999999998 889999
Q ss_pred eEe
Q 010550 504 ACG 506 (507)
Q Consensus 504 ~~~ 506 (507)
++.
T Consensus 100 ~~~ 102 (144)
T 3l9b_A 100 TFR 102 (144)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-12 Score=131.83 Aligned_cols=80 Identities=20% Similarity=0.420 Sum_probs=70.1
Q ss_pred CceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CCC
Q 010550 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RTG 500 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~~ 500 (507)
..|.|.|+|++|+||++ .+.+||||+|++++++.||+++++++||+|||.|.|.+...+..+.|.|+|||+ +|+
T Consensus 392 ~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD 471 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD 471 (540)
T ss_dssp TEEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred cccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 46799999999999986 247999999999999999999999999999999999865433467999999998 678
Q ss_pred eeeeEe
Q 010550 501 VIGACG 506 (507)
Q Consensus 501 ~iG~~~ 506 (507)
+||++.
T Consensus 472 ~LG~~~ 477 (540)
T 3nsj_A 472 LLGSCD 477 (540)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=135.01 Aligned_cols=108 Identities=34% Similarity=0.506 Sum_probs=91.8
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~ 338 (507)
..+.|.|++.+|++|..+|..|.+||||++++.+. ...+++|+++++++||.|||+|.|.+.... ...|.++|||+|
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d 249 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence 35789999999999999999999999999999543 234579999999999999999999987433 456999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
..++|++||++.+++.++.... ...|+.+..
T Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccccccccccccchhhhccCC-cccceeecc
Confidence 9999999999999999998654 466777643
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-11 Score=124.27 Aligned_cols=79 Identities=24% Similarity=0.458 Sum_probs=70.6
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
..|.|.|+|.+|+||+.+ +.+||||++++++++++|+++++|+||+|||.|.|.+..+ ..+.|.|+|||+ +|
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~~~~~ 463 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQFSPD 463 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCSSSSC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCC
Confidence 568999999999999764 5799999999999999999999999999999999999765 346899999998 68
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 464 d~lG~~~ 470 (510)
T 3jzy_A 464 DFLGRTE 470 (510)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 9999985
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=126.26 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=91.1
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc---cCCceeeeecCC-CCCCeEee-EEEEE-eecCCCCeEEEEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTTVKKK-NLNPEWNE-NFKLV-VKEPESQILQLQVFD 336 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~v~~~-t~nP~Wne-~f~f~-v~~~~~~~L~v~V~d 336 (507)
...|.|+|++|++|+.. .+||||++.+.+. ...+++|+++++ +.||+||| +|.|. +..++...|+|+|||
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D 799 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence 34799999999999853 6899999999752 112368998875 59999999 69998 766666789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccCC
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~~ 398 (507)
+| +++||++.+||..|..+- ..++|... ....-..|.|.+.+.+.....+
T Consensus 800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~-----~g~~l~~atLfv~i~~~~~~~~ 849 (885)
T 3ohm_B 800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNE-----ANQPLCLPALLIYTEASDYIPD 849 (885)
T ss_dssp TT----TEEEEEEEEETTTCCCEE---EEEEEECT-----TSCEEEEEEEEEEEEEEECCCG
T ss_pred CC----ccEEeeEEEEHHHcCCCc---eEEEecCC-----CCCccCceEEEEEEEEEecCCc
Confidence 86 789999999999998762 23444321 0112256899999998865433
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-10 Score=124.95 Aligned_cols=115 Identities=22% Similarity=0.332 Sum_probs=87.3
Q ss_pred ceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc---cCCceeee-ecC-CCCCCeEee-EEEE-EeecCCCCeEEEEE
Q 010550 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTT-VKK-KNLNPEWNE-NFKL-VVKEPESQILQLQV 334 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~-v~~-~t~nP~Wne-~f~f-~v~~~~~~~L~v~V 334 (507)
..|.|.|+|++|++|+. +.+||||++.+.+. ...+++|+ +++ ++.||+||| +|.| .+..++...|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 36899999999999984 46899999999542 22346898 776 569999999 7999 88766667899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCC-ccceEEEEEEEEE
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM-KQRGKIVVELTYV 393 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~G~i~l~l~~~ 393 (507)
||++ +++||++.+||..|..+ ..+++|... .+. -..+.|.+.+.+.
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~------~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSE------SNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCCE---EEEEEEECT------TCCEEEEEEEEEEEEEE
T ss_pred EEeC----CCccceEeeehhhcCCC---cEEEeccCC------CCCCCCceEEEEEEEEE
Confidence 9986 78999999999999865 234555321 111 2347777777664
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-10 Score=122.90 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=90.2
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC----CceeeeecCC-CCCCeEeeE-EEEE-eecCCCCeEEEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----PWKKTTVKKK-NLNPEWNEN-FKLV-VKEPESQILQLQVF 335 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~----~~~~T~v~~~-t~nP~Wne~-f~f~-v~~~~~~~L~v~V~ 335 (507)
.+.|+|+|++|++|+.+ .+||||++.+.+... .+++|+++++ +.||+|||+ |.|. +..++...|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999753 689999999975321 3468998875 699999998 9998 77666678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEeccC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~~ 397 (507)
|++ +++||++.+||+.|..+- ..++|... ....-..++|.+.+.+.....
T Consensus 725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~-----~g~~~~~atLfv~i~~~~~~~ 774 (816)
T 3qr0_A 725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNE-----SNRPLGLASVFAHIVAKDYVS 774 (816)
T ss_dssp ETT----SCEEEEEEEESTTCCCEE---EEEEEECT-----TSCEEEEEEEEEEEEEEECCC
T ss_pred ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCC-----CCCCCCceEEEEEEEEEecCc
Confidence 985 789999999999998762 23444321 111223478888888775443
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-10 Score=123.22 Aligned_cols=79 Identities=25% Similarity=0.491 Sum_probs=70.2
Q ss_pred CceEEEEEEeeeecCCC---C---CCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 427 GAGLLSVLVQGAEDVEG---E---NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~---~---~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
..+.|.|+|++|++|+. + +.+||||++++++ .++||+++++++||+|||.|.|.+..+ ..+.|.|+|||+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~ 94 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA 94 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEEC
Confidence 57899999999999987 3 5799999999984 578999999999999999999999875 356999999998
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 95 D~~~ddfIG~v~ 106 (749)
T 1cjy_A 95 NYVMDETLGTAT 106 (749)
T ss_dssp CSSSCEEEEEEC
T ss_pred CCCCCceeEEEE
Confidence 588999985
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.01 E-value=8e-10 Score=118.60 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=68.8
Q ss_pred CceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC-----eEEEeeeecCC-CCCcccceEEEEecCCCCCceEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG-----DKKRTKMIRKT-RDPAWNEEFQFMLDEPPLHEKIHIEVM 495 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~-----~~~dPyv~v~~~~-----~~~kT~v~~~t-~nP~wnE~f~f~v~~~~~~~~L~v~V~ 495 (507)
..+.|.|+|++|++|+.. +.+||||+|++.+ .++||++++++ .||+|||+|+|.+..+. ...|.++||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e-l~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD-LALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG-GCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC-CCEEEEEEE
Confidence 578999999999999863 4799999999965 46799999997 99999999999998763 368999999
Q ss_pred EC----CCCeeeeEe
Q 010550 496 SK----RTGVIGACG 506 (507)
Q Consensus 496 d~----~~~~iG~~~ 506 (507)
|+ ++++||++.
T Consensus 574 D~D~~~~dd~iG~~~ 588 (624)
T 1djx_A 574 DYDSSSKNDFIGQST 588 (624)
T ss_dssp ECCSSSCCEEEEEEE
T ss_pred EcCCCCCCceeEEEE
Confidence 98 688999974
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.6e-09 Score=86.94 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=85.2
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCC-ceee-eecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLP-WKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~-~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~ 340 (507)
.+.|+|.+.++.--.-+......||||.+.+...... ..+| ..+++|..|+|||+|.-.+.+ .+.|.+.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE- 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT-
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC-
Confidence 3578888866653222222346899999999744321 2355 777899999999999998875 5789999997653
Q ss_pred CCCCeeEEEEEECcccC-----CCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 341 GGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
++++.|.+++.+|. .+...+.|++| ++.|+|++.+.|+
T Consensus 82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF 124 (126)
T ss_dssp ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence 89999999999998 34556788876 4689999999987
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.5e-09 Score=86.19 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=87.1
Q ss_pred ceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCccC-Cceee-eecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 010550 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL-PWKKT-TVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~-~~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~ 338 (507)
..+.|+|.+.++.--+... .....||||.+.+..... ...+| ..+++|..|+|||+|.-.+.+ .+.|.+.|++..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 85 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN 85 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence 3467888887765433221 123589999999975422 23567 777889999999999988864 578999999654
Q ss_pred CCCCCCeeEEEEEECcccC-----CCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 339 KVGGHDRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
. +|+..|.+++.+|. .+...+.|++| ++.|+|++.+.|+-
T Consensus 86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~~ 130 (138)
T 2enj_A 86 V----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYFL 130 (138)
T ss_dssp C----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEECC
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEEE
Confidence 3 89999999999998 44566889886 46899999999973
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-09 Score=114.72 Aligned_cols=78 Identities=26% Similarity=0.363 Sum_probs=67.1
Q ss_pred CceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEEEeeeecC-CCCCcccce-EEEE-ecCCCCCceEEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKMIRK-TRDPAWNEE-FQFM-LDEPPLHEKIHIEVMS 496 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~-------~~~kT~v~~~-t~nP~wnE~-f~f~-v~~~~~~~~L~v~V~d 496 (507)
..+.|.|+|.+|++|+.+ .+||||+|.+.+ +++||+++++ +.||+|||+ |.|. +..+++ ..|.++|||
T Consensus 648 ~~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel-a~Lrf~V~D 725 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK-QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL-AVVRIIVSE 725 (816)
T ss_dssp CCEEEEEEEEEEECCCSS-CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG-CEEEEEEEE
T ss_pred cceEEEEEEEEcccCCCC-CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc-cEEEEEEEe
Confidence 357899999999999874 799999999975 4679999987 599999998 9998 776633 589999999
Q ss_pred CCCCeeeeEe
Q 010550 497 KRTGVIGACG 506 (507)
Q Consensus 497 ~~~~~iG~~~ 506 (507)
+++++||++.
T Consensus 726 ~dddfiG~~~ 735 (816)
T 3qr0_A 726 ENGKFIGHRV 735 (816)
T ss_dssp TTSCEEEEEE
T ss_pred cCCCeeeEEE
Confidence 9999999874
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-09 Score=113.71 Aligned_cols=78 Identities=27% Similarity=0.546 Sum_probs=67.6
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEE-----cCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILY-----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~-----~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--- 497 (507)
+.|.|+|.+|+||... +.+||||++++ ...+++|+++++|+||+|||.|.|.+........|.|+|||+
T Consensus 172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~ 251 (674)
T 3pfq_A 172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 251 (674)
T ss_dssp SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred ceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccc
Confidence 4699999999999763 57999999999 345679999999999999999999998765556899999998
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
.|++||++.
T Consensus 252 ~~dd~iG~~~ 261 (674)
T 3pfq_A 252 SRNDFMGSLS 261 (674)
T ss_dssp SCCEECCBCC
T ss_pred cccccccccc
Confidence 788999874
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-10 Score=117.75 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=9.4
Q ss_pred CceEEEEEEeeeecCCCCCCCCcEEEEEEcCe-EEEeeeecCC---CCCcccceEEEEecCCCCCceEEEEEEEC-----
Q 010550 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGD-KKRTKMIRKT---RDPAWNEEFQFMLDEPPLHEKIHIEVMSK----- 497 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~-~~kT~v~~~t---~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----- 497 (507)
..+.|.|+|++|+||+.++ ||||+++++++ ..||+++++| +||+|||.|+|.+... .+.|.|+|||+
T Consensus 9 ~~~~L~V~VieAk~L~~~d--dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~~~ 84 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDKKR 84 (483)
T ss_dssp EEECC-----------------------------------------------CCEECC----------------------
T ss_pred eccEEEEEEEEcCCcCCCC--CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCccc
Confidence 4578999999999999865 99999999886 4599999999 9999999999987543 47899999993
Q ss_pred ---CCCeeeeEe
Q 010550 498 ---RTGVIGACG 506 (507)
Q Consensus 498 ---~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 85 ~~~~d~~lG~v~ 96 (483)
T 3bxj_A 85 KKDKAGYVGLVT 96 (483)
T ss_dssp ------------
T ss_pred cCCCCceEEEEE
Confidence 578999874
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.1e-09 Score=114.08 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=65.4
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eEEEeeeecC-CCCCcccc-eEEEE-ecCCCCCceEEEEEEECC
Q 010550 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTKMIRK-TRDPAWNE-EFQFM-LDEPPLHEKIHIEVMSKR 498 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~------~~~kT~v~~~-t~nP~wnE-~f~f~-v~~~~~~~~L~v~V~d~~ 498 (507)
...|.|+|++|++|+.+ .+||||+|.+.+ .++||+++++ +.||+||| .|.|. +..++ ...|.++|||++
T Consensus 724 ~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe-la~Lrf~V~D~d 801 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT-LASLRIAAFEEG 801 (885)
T ss_dssp CEEEEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG-GCEEEEEEEETT
T ss_pred ceEEEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC-cCEEEEEEEcCC
Confidence 45799999999999974 799999999975 2469999987 59999999 69998 76653 358999999999
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
+++||++.
T Consensus 802 ddfiG~~~ 809 (885)
T 3ohm_B 802 GKFVGHRI 809 (885)
T ss_dssp TEEEEEEE
T ss_pred ccEEeeEE
Confidence 99999874
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=112.07 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=65.9
Q ss_pred CceEEEEEEeeeecCCCCCCCCcEEEEEEcC------eEEEee-eecC-CCCCcccc-eEEE-EecCCCCCceEEEEEEE
Q 010550 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTK-MIRK-TRDPAWNE-EFQF-MLDEPPLHEKIHIEVMS 496 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~------~~~kT~-v~~~-t~nP~wnE-~f~f-~v~~~~~~~~L~v~V~d 496 (507)
..+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ +.||+||| .|.| .+..+++ ..|.++|+|
T Consensus 676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el-~~Lr~~V~D 753 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL-ASLRVAVME 753 (799)
T ss_dssp TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG-CEEEEEEEE
T ss_pred eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc-cEEEEEEEE
Confidence 46789999999999996 4799999999954 256999 8875 69999999 6999 8876633 489999999
Q ss_pred CCCCeeeeEe
Q 010550 497 KRTGVIGACG 506 (507)
Q Consensus 497 ~~~~~iG~~~ 506 (507)
+++++||++.
T Consensus 754 ~d~d~iG~~~ 763 (799)
T 2zkm_X 754 EGNKFLGHRI 763 (799)
T ss_dssp TTTEEEEEEE
T ss_pred eCCCccceEe
Confidence 9999999874
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.5e-05 Score=61.39 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=59.1
Q ss_pred CceEEEEEEeeeec--CCC-CCCCCcEEEEEEcCeE----EEe-eeecCCCCCcccceEEEEecCCCCCceEEEEEEECC
Q 010550 427 GAGLLSVLVQGAED--VEG-ENHNNPYAIILYKGDK----KRT-KMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKR 498 (507)
Q Consensus 427 ~~g~L~V~v~~a~~--L~~-~~~~dPyv~v~~~~~~----~kT-~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~~ 498 (507)
.+..|++.+.++.. |+. ....||||.+.+.... .+| ..+++|..|.|||.|.-.+.+. ..|+|.|+++.
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a 80 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA 80 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT---CEEEEEEEEET
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC---EEEEEEEEcCC
Confidence 45678998877753 322 1369999999986543 254 7788899999999999999875 78999999876
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
-+++..|+
T Consensus 81 ~~fvAn~t 88 (126)
T 1yrk_A 81 EEPVSEVT 88 (126)
T ss_dssp TEEEEEEE
T ss_pred CCeeeEEE
Confidence 68887774
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.7e-05 Score=62.52 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=60.6
Q ss_pred CceEEEEEEeeeecCCC----CCCCCcEEEEEEcCeE----EEe-eeecCCCCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 427 GAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGDK----KRT-KMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~----~~~~dPyv~v~~~~~~----~kT-~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
..+.|+|.+.++.--+. ....||||.|.+.... -+| ..+++|..|.|||.|.-.+.+. ..|+|.|+++
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~ 84 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG---RVMQIIVKGK 84 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS---CEEEEEEECS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC---eEEEEEEEcC
Confidence 45679999988765332 2469999999986542 377 7778899999999999998775 7899999987
Q ss_pred CCCeeeeEe
Q 010550 498 RTGVIGACG 506 (507)
Q Consensus 498 ~~~~iG~~~ 506 (507)
.-+++..|+
T Consensus 85 a~~fVAn~t 93 (138)
T 2enj_A 85 NVDLISETT 93 (138)
T ss_dssp SCSCCEEEE
T ss_pred CCCeeeEEE
Confidence 668888774
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.71 E-value=1.8 Score=39.17 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=41.5
Q ss_pred CceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCC----CCCCeeEEEEEECcc
Q 010550 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV----GGHDRLGMQLVPLKL 355 (507)
Q Consensus 299 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d~~~~----~~d~~lG~~~i~l~~ 355 (507)
..++|.|...+.+|.|+|++.+.+... ....|.|++++...- ..+..+|.+.+||-+
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 346888989999999999999988632 356799999876532 122367888777643
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=90.80 E-value=3.1 Score=35.49 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=83.4
Q ss_pred cCceEEEEEEEEEeccccccC-cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC-------CCCeEE
Q 010550 260 KKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-------ESQILQ 331 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L~ 331 (507)
..-.+.+.|+|.++.--+..- ..+..+|+.-+.++=-.+....|.+.. +.+|.+|-+-.+.+... .+..+.
T Consensus 14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT 92 (156)
T ss_dssp CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence 345689999999987322110 123457776666654444456677765 78999998888887521 145788
Q ss_pred EEEEEcCCCCCCCeeEEEEEECcccCCCCce-EEEEeccccccCCCCCCC-ccceEEEEEEEEEec
Q 010550 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHETK-EFTLDLLKHTNISDPKDM-KQRGKIVVELTYVPF 395 (507)
Q Consensus 332 v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~l~~~~~~~~~~~~-~~~G~i~l~l~~~p~ 395 (507)
++++.... +..+.+|.+.|+|.++...+.+ ....++... .+. ..-|.|.+.++....
T Consensus 93 lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~------~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 93 LEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGT------KGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBS------SSCCTTSEEEEEEEEEEEC
T ss_pred EEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcC------CCCcceEEEEEEEEEEecc
Confidence 99988742 3456899999999999865442 333344221 111 467999999987653
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=89.37 E-value=3.6 Score=46.17 Aligned_cols=93 Identities=23% Similarity=0.199 Sum_probs=61.8
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCCc-eeeeecCCCCCCeEeeEEEEEee---cCCCCeEEEEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFD 336 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~V~d 336 (507)
...++|+|.++.++.... ....+-||.+.+ |++.... .+|+. ....+|.|||...|.+. -|....|.|+||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 357899999998886432 234677888877 3333322 23433 34567889999998876 3457899999998
Q ss_pred cCCC----CCCCeeEEEEEECcccC
Q 010550 337 WDKV----GGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 337 ~~~~----~~d~~lG~~~i~l~~l~ 357 (507)
.... ..+..||.+.++|-+-.
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 6542 12347899999887654
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=1.9 Score=47.88 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=60.9
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEE--cCccCC-ceeeeecCCCCCCeEeeEEEEEee---cCCCCeEEEEEEE
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQVFD 336 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~V~d 336 (507)
...+.|+|.++.++... ..++-||.+.+ |+.... ...|+.+....+|.|||...|.+. -|....|.++||+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 45789999999998654 34677887765 443331 234544455778999999998876 2457899999999
Q ss_pred cCCC--C----------CCCeeEEEEEECcccC
Q 010550 337 WDKV--G----------GHDRLGMQLVPLKLLT 357 (507)
Q Consensus 337 ~~~~--~----------~d~~lG~~~i~l~~l~ 357 (507)
.... + .+..+|.+.+++-+-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EC----------------CEEEEEEEEESBCTT
T ss_pred ecCCccCccccccccccccceEEEEeeeEECCc
Confidence 6431 1 1347888888876543
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=2.5 Score=46.93 Aligned_cols=70 Identities=9% Similarity=0.227 Sum_probs=51.7
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEE--cCeE----EEeeeecCCCCCcccceEEEEec--CCCCCceEEEEEEEC
Q 010550 428 AGLLSVLVQGAEDVEGENHNNPYAIILY--KGDK----KRTKMIRKTRDPAWNEEFQFMLD--EPPLHEKIHIEVMSK 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~~~~dPyv~v~~--~~~~----~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~~L~v~V~d~ 497 (507)
...+.|+|.++.+++..+..+-||++.+ |++. ..|+.+....+|.|||-++|.+. +-|.+..|.++||+-
T Consensus 216 ~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 293 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV 293 (940)
T ss_dssp CSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred CCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence 3569999999999987656778888665 4442 36666666889999998888754 556677999999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 507 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-25 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 0.002 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 9e-21 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-20 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-20 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-19 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-07 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 3e-18 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-04 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-17 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-17 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-16 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-05 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-16 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 9e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-15 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-15 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 5e-15 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-04 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-13 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 5e-13 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-11 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 0.001 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 3e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 5e-04 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 6e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-09 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-07 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 99.4 bits (247), Expect = 2e-25
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 256 SVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN 315
S P G L V +V A L DFL DPYV+L+ + K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD--QKSNVAEGMGTTPEWN 59
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375
E F V E +++ + ++FD D D +G +PL+ + F + T +
Sbjct: 60 ETFIFTVSEGTTEL-KAKIFDKDVGTEDDAVGEATIPLEPV-------FVEGSIPPTAYN 111
Query: 376 DPKDMKQRGKIVVELTYVPFKEDS 399
KD + +G+I V L++ P S
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.6 bits (84), Expect = 0.002
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEP 484
G L V++ A+ +E + +PY + + +++ + P WNE F F + E
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 485 PLHEKIHIEVMSKRTG 500
++ ++ K G
Sbjct: 70 --TTELKAKIFDKDVG 83
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.9 bits (212), Expect = 9e-21
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 266 LHVKVVRASKLLK---KDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V V+RA+K+ K D L T DPYV+L ++ K+T ++NP WNE F+ ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQ 382
+ +L++ + D + + LG + + E KE +
Sbjct: 65 DPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------VT 113
Query: 383 RGKIVVELTYVP 394
+ + L
Sbjct: 114 EMVLEMSLEVAS 125
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.6 bits (211), Expect = 1e-20
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKL 320
K VGIL VKV++A+ LL DF G SDP+ L L ++L KNLNPEWN+ F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59
Query: 321 VVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDM 380
+K+ + ++ VFD D D LG +PL + + + L +
Sbjct: 60 PIKDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKD-------LEQ 111
Query: 381 KQRGKIVVELTYV 393
+G I +E+ +
Sbjct: 112 AFKGVIYLEMDLI 124
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.8 bits (209), Expect = 3e-20
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNEN--FKLV 321
L V +++A++L D GTSDPYVK+ L +K +T V +K LNP +NE FK+
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369
E + L + V+D+D+ HD +G VP+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.4 bits (203), Expect = 2e-19
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
+L V V A L+ D G SDPYVKL L + +KT K +LNPEWNE F+
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 322 VKEPE-SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
+KE + + L ++++DWD +D +G + L + LL
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW-FKLLSQ 124
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 429 GLLSVLVQGAEDVEGENHN---NPYAIILYKGDKK-----RTKMIRKTRDPAWNEEFQFM 480
+L V+V+ A+++ + N +PY + D K +TK I+ + +P WNE F+F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 481 LDEPPLHEKIHIEVMSK 497
L E ++ +E+
Sbjct: 75 LKESDKDRRLSVEIWDW 91
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.6 bits (193), Expect = 3e-18
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLV 321
L V ++ A L ++ +PYVK+ ++ ++T KK L P+WN+ F
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 322 VKEP---ESQILQLQVFDWDKVGGH--DRLGMQLVPL-KLLTPHETKEFTL 366
++L++ ++D +V + LG L+ L L E + L
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 4e-04
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 426 SGAGLLSVLVQGAED---VEGENHNNPYAIILYKGDKK-----RTKMIRKTRDPAWNEEF 477
L V + GA+D E NPY I + D+ RTK ++KT +P WN+ F
Sbjct: 11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 70
Query: 478 QFMLDEPP--LHEKIHIEVMSK 497
+ + I + +
Sbjct: 71 IYSPVHRREFRERMLEITLWDQ 92
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.1 bits (186), Expect = 3e-17
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 250 PILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--------- 300
PI + I +G L + +++A L+ +D G SDP+VK+ L +
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 301 --KKTTVKKKNLNPEWNENFKLVV---KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKL 355
++T +K+LNPEWN+ ++ + L++ V+D+D+ +D LG L+ L
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 356 LTPHETKEFTLDLLKHT 372
+ + L + T
Sbjct: 124 TSHLDNTPRWYPLKEQT 140
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.8 bits (188), Expect = 3e-17
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLV 321
G L V ++ A L K D G SDPYVK+ L G++L KKTT+KK LNP +NE+F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 322 VKEPESQILQLQV--FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379
V + Q +Q+ V D+DK+G +D +G V + I+
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144
Query: 380 MKQRGKIVVELT 391
++ ++ L
Sbjct: 145 LQVEEEVDAMLA 156
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.9 bits (87), Expect = 8e-04
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 428 AGLLSVLVQGAEDVEGENHN---NPYAIILYKGDK-----KRTKMIRKTRDPAWNEEFQF 479
AG L+V++ A++++ + +PY I + K+T + + T +P +NE F F
Sbjct: 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
Query: 480 MLDEPPL-HEKIHIEVMS----KRTGVIGAC 505
+ + ++ + V+ + IG
Sbjct: 84 EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 114
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.7 bits (183), Expect = 1e-16
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLV 321
L V V++A L K D G SDPYVK++L K KKT VKK N +NE F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 322 VKEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLK 354
+ + ++ V D ++ ++ +G ++
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 2e-05
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 425 LSGAGLLSVLVQGAED---VEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEE 476
S L+V+V A + ++PY + KK+T + + T + +NE
Sbjct: 11 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 70
Query: 477 FQFMLDEPPL-HEKIHIEVMSKRTG----VIGAC 505
F F + L + V+ G VIG
Sbjct: 71 FVFDIPCESLEEISVEFLVLDSERGSRNEVIGRL 104
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 1e-16
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
V + A L D TSDPY+K+++ EK KT V +K L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 323 KEPE---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK-EFTLDLLK 370
L + +D+ D +G L+PL + E K +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.2 bits (176), Expect = 9e-16
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
G+L V +++AS L D G SDPYVK SL E KK T++KK LNP +NE
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 322 V--KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
V + E+ L + V D+D +G ++ +G+ V + PH + + ++L +
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHW-AEMLAN 130
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 1e-15
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
L + V+ A K PYV++++ G+ KKT +P+W + ++V
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLK-LLTPH----ETKEFTLDLLKHTNISDPK 378
L +V+ + LG + + L + E TL L D +
Sbjct: 63 PV--SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG-----GDKE 115
Query: 379 DMKQRGKIVVELTYVP 394
+ G + + L +
Sbjct: 116 PTETIGDLSICLDGLQ 131
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.6 bits (172), Expect = 2e-15
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 261 KPVGILHVKVVRASKLLK--KDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN 315
+P L V+++ +L K K+ DP V + + G + + NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 316 ENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360
F+ V P+ +++ V D+D +D +G +P L
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 105
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.9 bits (170), Expect = 5e-15
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKK--TTVKKKNLNPEWNENFKLV 321
G L V ++R L D G SDP+VKL L + K T +KKK LNPE+NE F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 322 VK--EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373
+K + + L + V+D+D +D +G L + E + + LK+ +
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGG--CQLGISAKGERLKHWYECLKNKD 126
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 428 AGLLSVLVQGAED---VEGENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQF 479
G L V + ++ +++P+ + K D K +T++ +KT +P +NEEF +
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 480 MLDEPPLHEKI 490
+ L +K
Sbjct: 74 DIKHSDLAKKS 84
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.7 bits (159), Expect = 1e-13
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNE--NFKLV 321
L V++++A L KD G SDPYVK+ L ++ +T V +K LNP +NE F +
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77
Query: 322 VKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTL--DLLK 370
+ E + L V+D+D+ HD +G ++ L + + L D+L+
Sbjct: 78 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 64.1 bits (155), Expect = 5e-13
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 25/142 (17%)
Query: 264 GILHVKVVRASKLLKKDFL-----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312
G+L +K+ A L + DPY+ L++ + +T K+K +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSP 63
Query: 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372
W++ F V +L VF +G D + + + L + ++ F +
Sbjct: 64 AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI---- 117
Query: 373 NISDPKDMKQRGKIVVELTYVP 394
D++ GK+ V +
Sbjct: 118 ------DLEPEGKVYVIIDLSG 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 2e-11
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLS-LTGEKLPWKKTTVKKKNLNPEWNENFKLVV 322
L V + A + G D YV+ S +T +KK+ L+ W E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 323 KEPESQ--ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKH 371
E E L L + D+ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.001
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 13/85 (15%)
Query: 413 GSGNDQSSDEEA---------LSGAGLLSVLVQGAEDVEGENHNNPYAIILYKGD----K 459
GS S +A L V A + + Y +
Sbjct: 1 GSSGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVE 60
Query: 460 KRTKMIRKTRDPAWNEEFQFMLDEP 484
+T + ++ W E L E
Sbjct: 61 AQTALKKRQLHTTWEEGLVLPLAEE 85
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.6 bits (141), Expect = 3e-11
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 17/131 (12%)
Query: 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPW--KKTTVKKKNLNPEWNENFKLVV 322
L + + S P+ + + K KK + PEW F +
Sbjct: 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63
Query: 323 KEPESQILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMK 381
E +Q+ + + +G+ ++ + + EF LDL +
Sbjct: 64 YEGRV--IQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------Q 109
Query: 382 QRGKIVVELTY 392
+ K+++ + Y
Sbjct: 110 PQAKVLMCVQY 120
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 5e-04
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 445 NHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVM 495
+ + P+ + K K + T P W F + E I I +M
Sbjct: 22 DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLM 74
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (131), Expect = 6e-10
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTG-----EKLPWKKTTVKKKNLNPEWNEN--F 318
L + V+ L ++ YV++ L G ++ K + ++NP W E
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 319 KLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359
+ PE L++ V + + LG +++P+ L
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSG 95
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.8 bits (126), Expect = 3e-09
Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK 323
+L V V +A ++ + YV L + K TT+ + P W ++F +
Sbjct: 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK----STTIAVRGSQPSWEQDFMFEIN 54
Query: 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLL--TPHETKEFTLDLLKHTNISDPKDMK 381
+ + ++V++ + +G +PL+ + + E L L D + +
Sbjct: 55 RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL-------DSQAIM 105
Query: 382 QRGKIV 387
+I
Sbjct: 106 ADSEIC 111
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.9 bits (108), Expect = 8e-07
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE 488
LL V V+ A+ + N Y + + K T + + P+W ++F F ++ L
Sbjct: 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLGL 60
Query: 489 KIHIE 493
+ +
Sbjct: 61 TVEVW 65
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.85 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.84 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.8 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.78 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.76 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.7 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.66 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.65 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.64 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.63 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.62 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.61 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.61 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.61 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.6 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.59 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.57 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.57 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.56 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.56 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.52 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.52 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.52 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.51 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.51 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.5 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.45 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.43 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.38 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.37 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.22 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.11 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.34 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 87.35 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.2e-22 Score=171.86 Aligned_cols=122 Identities=36% Similarity=0.570 Sum_probs=104.5
Q ss_pred CceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 010550 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (507)
Q Consensus 261 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~ 340 (507)
.+.|+|+|+|++|++|+.++..|.+||||+++++++. ++|+++++|.||.|||+|.|.+.++ .+.|.|+|||++.+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence 4679999999999999999999999999999998765 5899999999999999999999765 47899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 341 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
++|++||++.++|+++..+..+++++... ....+.+|+|+++++|.
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~-------~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQPNCYVLKNK-------DLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSCCEECCCBCS-------CTTSCCSSEEEEEEEEE
T ss_pred cCcceEEEEEEEHHHCCCCCceEEEcccc-------CCCCceeEEEEEEEEEE
Confidence 99999999999999998776655444321 11245679999999875
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.85 E-value=2.3e-21 Score=166.25 Aligned_cols=127 Identities=31% Similarity=0.510 Sum_probs=105.8
Q ss_pred cccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecC-CCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 010550 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFD 336 (507)
Q Consensus 258 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~V~d 336 (507)
....+.|+|+|+|++|++|+.+|..|++||||+++++++. .+|++++ ++.||.|||+|.|.+.+. ...|.|+|||
T Consensus 4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~---~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d 79 (136)
T d1wfja_ 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeee---EEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence 3457889999999999999999999999999999998765 4666665 689999999999999864 4579999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCC-CceEEEEeccccccCCCCCCCccceEEEEEEEEEecc
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~~ 396 (507)
++.+++|++||++.|+|.++... .....|+.+.. +++.+|+|+++++|.|..
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeCC
Confidence 99999999999999999998543 33345665533 256789999999999854
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.4e-20 Score=158.98 Aligned_cols=121 Identities=26% Similarity=0.405 Sum_probs=105.3
Q ss_pred eEEEEEEEEEecccccc---CcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 010550 263 VGILHVKVVRASKLLKK---DFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~ 339 (507)
.+.|+|+|++|+||+.. |..|.+||||++++++....+++|++++++.||.|||+|.|.+.+.....|.++|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 37899999999999864 456899999999998765556799999999999999999999988777899999999986
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
. +|++||++.++|+++..+.....|++|. ....|+|++++++.|
T Consensus 82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence 5 6889999999999999888888899883 345799999998775
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.80 E-value=3.6e-19 Score=152.18 Aligned_cols=118 Identities=24% Similarity=0.340 Sum_probs=100.4
Q ss_pred ceEEEEEEEEEeccccccC-----------cCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeE
Q 010550 262 PVGILHVKVVRASKLLKKD-----------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQIL 330 (507)
Q Consensus 262 ~~g~L~V~v~~A~~L~~~d-----------~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L 330 (507)
-.|.|+|+|++|++|++.+ ..+.+||||++++++... .+|++++++.||.|||+|.|.+.+ .+.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l 79 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence 3599999999999998754 346789999999987653 579999999999999999999975 3689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCCC--ceEEEEeccccccCCCCCCCccceEEEEEEEEEec
Q 010550 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPHE--TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (507)
Q Consensus 331 ~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p~ 395 (507)
.|+|||++.+++|++||++.++|+++..+. ....|++| .+.|+|++.+++.|.
T Consensus 80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC------------CCCcEEEEEEEEEeC
Confidence 999999999999999999999999997654 35578876 246999999999874
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7.8e-19 Score=149.40 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.1
Q ss_pred EEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
+.|.|+|++|++++.++..+.+||||++.++++. ++|++++++.||.|||.|.|.+.. .+.|.|+|||++.+++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d 80 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD 80 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCC
Confidence 8899999999999998888899999999999865 589999999999999999999864 46899999999999999
Q ss_pred CeeEEEEEECcccCCC-----CceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 344 DRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 344 ~~lG~~~i~l~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
++||++.++|.++... .....++.+... .......|+|.+.+.+..
T Consensus 81 ~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-----~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 81 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEE
T ss_pred ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-----CCCceEEEEEEEEEeeEE
Confidence 9999999999987432 233445444321 123467799999987765
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2e-18 Score=148.85 Aligned_cols=111 Identities=33% Similarity=0.434 Sum_probs=97.0
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....+.|+|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 3455689999999999999999889999999999966554567999999999999999999987532 46789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 010550 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 369 (507)
++..+++++||++.++|+++..++....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred cCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 999999999999999999998888888898873
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2.4e-18 Score=146.29 Aligned_cols=107 Identities=35% Similarity=0.503 Sum_probs=91.9
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWDK 339 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~V~d~~~ 339 (507)
.+.|.|+|++|+||+.+|..|.+||||++++.+. ...+++|+++++|.||.|||+|.|.+.... ...|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 4789999999999999999999999999998543 234578999999999999999999987543 4579999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 340 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
+++|++||++.+++.++..+ ....|++|..
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence 99999999999999998765 4567888753
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=3.5e-18 Score=144.86 Aligned_cols=111 Identities=32% Similarity=0.457 Sum_probs=91.6
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~d 336 (507)
.....+.|.|+|++|+||+.++..|.+||||++++.+....+++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d 92 (130)
T d1dqva1 13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 92 (130)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence 4556789999999999999999899999999999976655568999999999999999999998643 35679999999
Q ss_pred cCCCCCCCeeEEEEEECcc-cCCC-CceEEEEecc
Q 010550 337 WDKVGGHDRLGMQLVPLKL-LTPH-ETKEFTLDLL 369 (507)
Q Consensus 337 ~~~~~~d~~lG~~~i~l~~-l~~~-~~~~~~~~l~ 369 (507)
++.+++|++||++.|++.. +... .....|++|.
T Consensus 93 ~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~ 127 (130)
T d1dqva1 93 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127 (130)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred cCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence 9999999999999998653 3322 2344577764
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=3e-17 Score=139.15 Aligned_cols=122 Identities=22% Similarity=0.389 Sum_probs=90.9
Q ss_pred EEEEEEEEEecccccc--CcCCCCCcEEEEEEcCc--cCCceeeeecC-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 010550 264 GILHVKVVRASKLLKK--DFLGTSDPYVKLSLTGE--KLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (507)
Q Consensus 264 g~L~V~v~~A~~L~~~--d~~g~~dpyv~v~l~~~--~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~ 338 (507)
..|+|+|++|++|+.. +..+.+||||++++.+. ...+++|++++ ++.||.|||+|.|.+..+....|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 45678999999999542 22346788765 4579999999999988777788999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEeccccccCCCCCCCccceEEEEEEEEE
Q 010550 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (507)
Q Consensus 339 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~ 393 (507)
..++|++||++.++|+++..+ ..+++|... ....-..++|.+++++.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~-----~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSK-----NGDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE---EEEEEEECT-----TSCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC---CEEEECCCC-----CcCCCCCCEEEEEEEEE
Confidence 999999999999999999765 235555321 11122456777777654
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=5.5e-18 Score=145.97 Aligned_cols=108 Identities=28% Similarity=0.419 Sum_probs=92.0
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccC-----------CceeeeecCCCCCCeEeeEEEEEeec---CCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL-----------PWKKTTVKKKNLNPEWNENFKLVVKE---PESQ 328 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~ 328 (507)
.|.|.|+|++|+||+.+|..|.+||||++++.+... .+++|++++++.||.|||+|.|.... ....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 488999999999999999999999999999954321 12579999999999999999997432 2467
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 329 ILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 329 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
.|.|+|||++.+++|++||++.|+|.++..+.....|++|..
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~ 138 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence 899999999999999999999999999987777778888754
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.1e-16 Score=134.36 Aligned_cols=121 Identities=18% Similarity=0.288 Sum_probs=90.6
Q ss_pred eEEEEEEEEEeccccccCcCCCCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 010550 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (507)
Q Consensus 263 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~ 342 (507)
++.|.|+|.+|++|.+++ +.||||++++++.+ .+|++++ +.||.|||+|.|.+.++ ...|.|+|||++.. +
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~ 71 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-W 71 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-C
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-C
Confidence 378999999999999876 67999999998754 5777776 45999999999999876 46899999999875 6
Q ss_pred CCeeEEEEEECcccCCC--CceEEEEeccccccCCC----CCCCccceEEEEEEEE
Q 010550 343 HDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISD----PKDMKQRGKIVVELTY 392 (507)
Q Consensus 343 d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~----~~~~~~~G~i~l~l~~ 392 (507)
|++||++.|+|+++..+ .....|+.|........ .........|+++++|
T Consensus 72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 89999999999999643 34456777743321110 0112244678888776
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7e-17 Score=138.12 Aligned_cols=110 Identities=25% Similarity=0.350 Sum_probs=90.2
Q ss_pred ccCceEEEEEEEEEeccccccCcCC-CCCcEEEEEEcCccCCceeeeecCCCCCCeEeeEEEEEeecC---CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g-~~dpyv~v~l~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~V 334 (507)
.....+.|.|+|++|+||+.++..+ .+||||++++.+....+++|++++++.||.|||+|.|..... ....|+|+|
T Consensus 17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V 96 (138)
T d1ugka_ 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence 3445678999999999999987665 479999999976655567899999999999999999974322 246899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCC-CceEEEEec
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDL 368 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l 368 (507)
||++.+++|++||++.++|+++... ...++|..+
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 9999999999999999999998644 345566665
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.1e-16 Score=136.78 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=92.4
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc-cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~ 335 (507)
.+...+.|.|+|++|++|+. .|.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 44556899999999999954 478899999999654 22346899999999999999999998643 3678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 370 (507)
|++.++++++||++.|+|.++........|++|..
T Consensus 98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 99999999999999999999987777888998854
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.2e-16 Score=135.27 Aligned_cols=94 Identities=33% Similarity=0.479 Sum_probs=79.3
Q ss_pred ccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc-
Q 010550 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK- 456 (507)
Q Consensus 381 ~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~- 456 (507)
.+.|+|.++++|.+ ..+.|.|+|++|+||+.+ +.+||||++++.
T Consensus 2 ~p~G~l~~sl~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~ 49 (130)
T d1dqva1 2 APCGRISFALRYLY--------------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP 49 (130)
T ss_dssp CSSCEEEEEEECCS--------------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTT
T ss_pred CCcEEEEEEEEEEC--------------------------------CCCEEEEEEEeeeCCccccCCCCcceEEEEEEcc
Confidence 45799999999976 346799999999999863 578999999994
Q ss_pred --CeEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 --~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
.+++||+++++|.||+|||.|.|.+...... ..|.|+|||+ +|++||+|.
T Consensus 50 ~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~ 106 (130)
T d1dqva1 50 DRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV 106 (130)
T ss_dssp STTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEE
T ss_pred CCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEE
Confidence 3467999999999999999999998765433 4799999998 688999985
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.1e-16 Score=132.78 Aligned_cols=109 Identities=24% Similarity=0.362 Sum_probs=84.6
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEE-eec--CCCCeEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQ 333 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~ 333 (507)
.....+.|+|+|++|+||+..+..+.+||||++++.+. ...+++|++++++.||.|||+|.|. +.. .....|.|+
T Consensus 9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~ 88 (125)
T d2bwqa1 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 88 (125)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence 34456899999999999999988899999999999543 3345789999999999999999996 432 235689999
Q ss_pred EEEcCCCC--CCCeeEEEEEECcccCCCCceEEEEec
Q 010550 334 VFDWDKVG--GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (507)
Q Consensus 334 V~d~~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~l 368 (507)
|||++..+ ++++||++.++|+++...+. ..|++|
T Consensus 89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 99999753 45699999999999876543 457765
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=4.1e-16 Score=133.31 Aligned_cols=98 Identities=30% Similarity=0.375 Sum_probs=77.6
Q ss_pred cCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcC--ccCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 010550 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (507)
Q Consensus 260 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V~ 335 (507)
....+.|.|+|++|+||+.++..+.+||||++++.+ ....+++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~ 90 (138)
T d1w15a_ 11 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL 90 (138)
T ss_dssp ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred cCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence 344578999999999999999889999999999843 333456899999999999999999998543 3457999999
Q ss_pred EcCCCCCCCeeEEEEEECcccC
Q 010550 336 DWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 336 d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
|++.++++++||++.+++....
T Consensus 91 d~~~~~~~~~iG~~~i~l~~~~ 112 (138)
T d1w15a_ 91 DSERGSRNEVIGRLVLGATAEG 112 (138)
T ss_dssp ECCTTSCCEEEEEEEESTTCCS
T ss_pred eCCCCCCCCEEEEEEEcchhCC
Confidence 9999999999999999997653
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=8.4e-16 Score=134.30 Aligned_cols=98 Identities=38% Similarity=0.544 Sum_probs=84.5
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~V 334 (507)
+....|.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||+|||+|.|.+.... ...|.|+|
T Consensus 20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v 99 (157)
T d1uowa_ 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (157)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence 34556899999999999999988899999999998543 334468999999999999999999987542 56899999
Q ss_pred EEcCCCCCCCeeEEEEEECccc
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLL 356 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l 356 (507)
||++.++++++||++.|++...
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 100 LDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp EECCSSSCCCEEEEEEEETTCC
T ss_pred cccCCCCCCceeEEEEEecccC
Confidence 9999999999999999999764
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=6.6e-16 Score=130.92 Aligned_cols=78 Identities=27% Similarity=0.533 Sum_probs=67.4
Q ss_pred eEEEEEEeeeecCCCC---CCCCcEEEEEE-----cCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---
Q 010550 429 GLLSVLVQGAEDVEGE---NHNNPYAIILY-----KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK--- 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~---~~~dPyv~v~~-----~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~--- 497 (507)
+.|.|+|++|+||+.+ +.+||||++++ +..+++|+++++|.||+|||.|.|.+..+..+..|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 94 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 94 (132)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence 4699999999999864 47899999999 445679999999999999999999998764455899999997
Q ss_pred -CCCeeeeEe
Q 010550 498 -RTGVIGACG 506 (507)
Q Consensus 498 -~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 95 ~~d~~iG~~~ 104 (132)
T d1a25a_ 95 SRNDFMGSLS 104 (132)
T ss_dssp SCCEEEEEEE
T ss_pred CCCcEeEEEE
Confidence 678999985
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=9.9e-16 Score=130.70 Aligned_cols=99 Identities=34% Similarity=0.456 Sum_probs=84.6
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCc--cCCceeeeecCCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~V 334 (507)
.....|.|+|+|++|+||+..+..+.+||||++++.+. ...+++|++++++.||.|||+|.|.+... ....|.|.|
T Consensus 10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v 89 (137)
T d2cm5a1 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 89 (137)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence 34556899999999999999988899999999998542 34457899999999999999999998643 356899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
||++..+++++||++.+++.++.
T Consensus 90 ~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 90 WDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred eeCCCCCCCCEEEEEEeCccccC
Confidence 99999999999999999998754
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.2e-15 Score=130.36 Aligned_cols=92 Identities=28% Similarity=0.432 Sum_probs=75.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc--C
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--G 457 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--~ 457 (507)
+|+|+++++|.| .++.|.|+|++|+||+.. +.+||||++++. +
T Consensus 1 rG~l~~sl~Y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~ 48 (138)
T d1w15a_ 1 RGELLVSLCYQS--------------------------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAK 48 (138)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCC------CCCEEEEEEEEETT
T ss_pred CcEEEEEEEEcC--------------------------------CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCc
Confidence 599999999997 245699999999999863 478999999982 2
Q ss_pred ---eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 458 ---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 ---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||.|||.|.|.+......+ .|.|+|||+ ++++||+|.
T Consensus 49 ~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~ 105 (138)
T d1w15a_ 49 KRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLV 105 (138)
T ss_dssp EEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEE
T ss_pred ccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEE
Confidence 2458999999999999999999987654444 799999997 678999985
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.3e-15 Score=129.97 Aligned_cols=92 Identities=29% Similarity=0.497 Sum_probs=77.8
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc---
Q 010550 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK--- 456 (507)
Q Consensus 383 ~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~--- 456 (507)
+|+|.++++|.| ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 rG~l~l~l~Y~~--------------------------------~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~ 48 (137)
T d2cm5a1 1 RGKILVSLMYST--------------------------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDM 48 (137)
T ss_dssp CCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC-
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCC
Confidence 599999999987 346799999999999853 579999999983
Q ss_pred --CeEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 457 --GDKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 --~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
..++||+++++|.||.|||.|.|.+...... ..|.|+|||. ++++||+|+
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~ 105 (137)
T d2cm5a1 49 GKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQ 105 (137)
T ss_dssp --CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEE
T ss_pred ccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEE
Confidence 2456999999999999999999998765433 3899999988 678999985
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.5e-16 Score=129.87 Aligned_cols=78 Identities=23% Similarity=0.534 Sum_probs=70.6
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
.-|+|.|+|++|+||+.+ +.+||||++++++++++|+++++|.||.|||.|+|.+.++ .+.|.|+|||+ ++
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~~~d 81 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDGDKPP 81 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEETTEEE
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccCCcCc
Confidence 468999999999999864 5799999999999999999999999999999999999875 47899999996 67
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||+|.
T Consensus 82 ~~lG~~~ 88 (126)
T d2ep6a1 82 DFLGKVA 88 (126)
T ss_dssp EECCBCE
T ss_pred ceEEEEE
Confidence 8999875
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=3.6e-15 Score=124.33 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=85.8
Q ss_pred EEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 010550 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (507)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 343 (507)
+.|.++.+..++. ..+.+||||++++.+.. ...++|+++++|+||+|||+|.|.+.+ .+.|.|.|||+| |
T Consensus 7 ~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d----d 78 (123)
T d1bdya_ 7 ISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA----E 78 (123)
T ss_dssp EEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----T
T ss_pred EEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----c
Confidence 4444555555443 46889999999996532 123579999999999999999999975 468999999986 6
Q ss_pred CeeEEEEEECcccC-----CCCceEEEEeccccccCCCCCCCccceEEEEEEEEEe
Q 010550 344 DRLGMQLVPLKLLT-----PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (507)
Q Consensus 344 ~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~l~l~~~p 394 (507)
+++|.+.+++.++. .+.....|+++ .++|+|+++++|++
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMCVQYFL 122 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeC------------CCCEEEEEEEEEec
Confidence 89999999999885 35567788876 25799999999985
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=1.2e-15 Score=131.13 Aligned_cols=96 Identities=26% Similarity=0.392 Sum_probs=78.4
Q ss_pred CCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEE
Q 010550 379 DMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILY 455 (507)
Q Consensus 379 ~~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~ 455 (507)
.....|+|++++.|.+ ..+.|.|+|++|+||+.+ +.+||||++++
T Consensus 16 ~~~~~G~l~~sl~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l 63 (143)
T d1rsya_ 16 EEEKLGKLQYSLDYDF--------------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFL 63 (143)
T ss_dssp --CCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred chhcceEEEEEEEEeC--------------------------------CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEE
Confidence 3456799999999976 234699999999999864 57899999999
Q ss_pred ---cCeEEEeeeecCCCCCcccceEEEEecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 456 ---KGDKKRTKMIRKTRDPAWNEEFQFMLDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 456 ---~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+.++++|++++++.||+|||.|.|.+...+. ...|.|+|||+ ++++||++.
T Consensus 64 ~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~ 122 (143)
T d1rsya_ 64 LPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK 122 (143)
T ss_dssp ETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEE
T ss_pred cCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEE
Confidence 3456799999999999999999998865422 34899999997 677999985
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.1e-14 Score=124.18 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=80.4
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCCCCCCcEEEEEEcC--
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG-- 457 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~~~~dPyv~v~~~~-- 457 (507)
.+..|+|++++.|.+ ..+.|.|+|++|+||+..+.+||||++++.+
T Consensus 9 ~~~~~~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~ 56 (138)
T d1wfma_ 9 WNQAPKLHYCLDYDC--------------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRT 56 (138)
T ss_dssp CSSCCEEEEEEEEET--------------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETT
T ss_pred CCcCCEEEEEEEECC--------------------------------CCCEEEEEEEEcCCCCCCCCcCcEEEEEECCCC
Confidence 456799999999986 2346999999999999888899999999953
Q ss_pred --eEEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 458 --DKKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
..++|++++++.||+|||.|.|.+...... ..|.|+|||. ++++||++.
T Consensus 57 ~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~ 112 (138)
T d1wfma_ 57 GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELR 112 (138)
T ss_dssp EEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEE
T ss_pred CccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEE
Confidence 246899999999999999999999765443 4899999997 688999985
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.4e-15 Score=124.61 Aligned_cols=95 Identities=25% Similarity=0.408 Sum_probs=77.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC----CCCCcEEEEEE
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILY 455 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~----~~~dPyv~v~~ 455 (507)
+...|+|++++.|.+. ...|.|+|++|+||+.. +.+||||++++
T Consensus 5 ~~~~G~l~~sl~Y~~~--------------------------------~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l 52 (138)
T d1ugka_ 5 SSGLGTLFFSLEYNFE--------------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI 52 (138)
T ss_dssp CCCCCEEEEEEEEEGG--------------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEE
T ss_pred CCCCEEEEEEEEEeCC--------------------------------CCEEEEEEEEecCCCCCCCCCCccceEEEEEE
Confidence 4567999999999872 34599999999999863 24799999999
Q ss_pred ---cCeEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC----CCCeeeeEe
Q 010550 456 ---KGDKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 456 ---~~~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~----~~~~iG~~~ 506 (507)
+..++||++++++.||.|||.|.|. +..... ...|.|+|||+ ++++||+|.
T Consensus 53 ~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~ 112 (138)
T d1ugka_ 53 LPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVL 112 (138)
T ss_dssp ETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEE
T ss_pred cCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEE
Confidence 3456799999999999999999997 433222 23899999986 689999985
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=7.5e-15 Score=128.15 Aligned_cols=95 Identities=27% Similarity=0.503 Sum_probs=80.0
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|.++++|.| ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 8 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~ 55 (157)
T d1uowa_ 8 LEKLGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 55 (157)
T ss_dssp GGCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred ceeeeEEEEEEEEcC--------------------------------CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEe
Confidence 456899999999997 246799999999999863 579999999984
Q ss_pred C-----eEEEeeeecCCCCCcccceEEEEecCCCCCc-eEEEEEEEC----CCCeeeeEe
Q 010550 457 G-----DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHE-KIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~-~L~v~V~d~----~~~~iG~~~ 506 (507)
. .++||++++++.||+|||.|.|.+...+..+ .|.|+|||+ ++++||+|.
T Consensus 56 ~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~ 115 (157)
T d1uowa_ 56 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 115 (157)
T ss_dssp ETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEE
T ss_pred cCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEE
Confidence 3 2358999999999999999999987664433 899999998 688999985
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.9e-15 Score=123.69 Aligned_cols=91 Identities=25% Similarity=0.510 Sum_probs=73.3
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc----
Q 010550 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK---- 456 (507)
Q Consensus 384 G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~---- 456 (507)
|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.
T Consensus 1 G~l~l~l~y~~--------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~ 48 (125)
T d2bwqa1 1 GQLSIKLWFDK--------------------------------VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRS 48 (125)
T ss_dssp CEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCS
T ss_pred CEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCC
Confidence 88999999986 235699999999999863 579999999992
Q ss_pred -CeEEEeeeecCCCCCcccceEEEE-ecCCCC-CceEEEEEEEC------CCCeeeeEe
Q 010550 457 -GDKKRTKMIRKTRDPAWNEEFQFM-LDEPPL-HEKIHIEVMSK------RTGVIGACG 506 (507)
Q Consensus 457 -~~~~kT~v~~~t~nP~wnE~f~f~-v~~~~~-~~~L~v~V~d~------~~~~iG~~~ 506 (507)
..+++|++++++.||.|||.|.|. +..... ...|.|+|||. ++++||+|.
T Consensus 49 ~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~ 107 (125)
T d2bwqa1 49 DKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEIL 107 (125)
T ss_dssp GGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEE
T ss_pred CccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEE
Confidence 345799999999999999999996 443322 23799999996 345999985
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.5e-14 Score=121.02 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=68.8
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC----CC
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----RT 499 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~~ 499 (507)
..+.|.|+|.+|+++..+ +.+||||++.++++.++|+++++|.||.|||.|+|.+.. .+.|.|+|||+ +|
T Consensus 4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~~~~d 80 (133)
T d2nq3a1 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKSD 80 (133)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSCC
T ss_pred cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccCCCCC
Confidence 347799999999999864 469999999999999999999999999999999999865 36899999998 67
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 81 ~~iG~~~ 87 (133)
T d2nq3a1 81 VLLGTAA 87 (133)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 8999985
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=1.2e-14 Score=123.72 Aligned_cols=78 Identities=22% Similarity=0.503 Sum_probs=69.6
Q ss_pred CceEEEEEEeeeecCCCC---CCCCcEEEEEEcCeEEEeeeec-CCCCCcccceEEEEecCCCCCceEEEEEEEC----C
Q 010550 427 GAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTKMIR-KTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK----R 498 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kT~v~~-~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~----~ 498 (507)
..|.|.|+|++|++|+.. +.+||||++++++++++|++++ ++.||+|||.|+|.+.+. ...|+|+|||+ .
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~~~~ 85 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDVGTE 85 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSSCTT
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecCCCC
Confidence 579999999999999864 5799999999999999999987 589999999999999875 46799999998 6
Q ss_pred CCeeeeEe
Q 010550 499 TGVIGACG 506 (507)
Q Consensus 499 ~~~iG~~~ 506 (507)
|++||+++
T Consensus 86 d~~iG~~~ 93 (136)
T d1wfja_ 86 DDAVGEAT 93 (136)
T ss_dssp TCCSEEEE
T ss_pred CCEEEEEE
Confidence 78999985
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=2.1e-15 Score=129.98 Aligned_cols=99 Identities=36% Similarity=0.524 Sum_probs=84.8
Q ss_pred ccCceEEEEEEEEEeccccccCcCCCCCcEEEEEEcCcc--CCceeeeecCCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 010550 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (507)
Q Consensus 259 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~V 334 (507)
.....|.|.|+|++|+||+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+.. .....|.|.|
T Consensus 15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v 94 (145)
T d1dqva2 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 94 (145)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence 345668999999999999998888999999999997542 234689999999999999999998753 2356799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccC
Q 010550 335 FDWDKVGGHDRLGMQLVPLKLLT 357 (507)
Q Consensus 335 ~d~~~~~~d~~lG~~~i~l~~l~ 357 (507)
||++..+++++||++.|++..+.
T Consensus 95 ~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 95 VDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp EECCSSSCCEEEEECCCSSCTTC
T ss_pred EecCCCCCCcEEEEEEECchHcC
Confidence 99999999999999999998764
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.7e-14 Score=120.70 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=68.1
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC---CCCeeeeE
Q 010550 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK---RTGVIGAC 505 (507)
Q Consensus 429 g~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~---~~~~iG~~ 505 (507)
++|.|+|++|++|.+++..||||++.+++.+.+|++++ +.||+|||.|.|.+.++ ++.|.|+|||+ .|++||++
T Consensus 2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~~~d~~lG~~ 78 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTMVGTV 78 (128)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCSSCEEEEEEE
T ss_pred eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCCcCCcceEEE
Confidence 47999999999999988999999999999999999886 55999999999999886 57899999999 78899987
Q ss_pred e
Q 010550 506 G 506 (507)
Q Consensus 506 ~ 506 (507)
.
T Consensus 79 ~ 79 (128)
T d2cjta1 79 W 79 (128)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=5.3e-15 Score=127.36 Aligned_cols=95 Identities=26% Similarity=0.506 Sum_probs=79.0
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEc
Q 010550 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYK 456 (507)
Q Consensus 380 ~~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~ 456 (507)
....|+|+++++|.| ..|.|.|+|++|+||+.. +.+||||++++.
T Consensus 3 ~~~~G~l~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~ 50 (145)
T d1dqva2 3 KADLGELNFSLCYLP--------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLI 50 (145)
T ss_dssp CSCCCEEEEEEEEET--------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCC
T ss_pred cCcceEEEEEEEEcC--------------------------------CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEc
Confidence 356899999999997 356799999999999753 468999999996
Q ss_pred Ce-----EEEeeeecCCCCCcccceEEEEecCCCCC-ceEEEEEEEC----CCCeeeeEe
Q 010550 457 GD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLH-EKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 457 ~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~-~~L~v~V~d~----~~~~iG~~~ 506 (507)
+. ++||+++++|.||.|||.|.|.+...... ..|.|+|+|+ ++++||+++
T Consensus 51 ~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~ 110 (145)
T d1dqva2 51 SEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCR 110 (145)
T ss_dssp TTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECC
T ss_pred cCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEE
Confidence 42 46899999999999999999988654322 3799999998 577999975
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.2e-14 Score=119.28 Aligned_cols=78 Identities=26% Similarity=0.514 Sum_probs=68.6
Q ss_pred ceEEEEEEeeeecCCCC------CCCCcEEEEEEcC---eEEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEEC-
Q 010550 428 AGLLSVLVQGAEDVEGE------NHNNPYAIILYKG---DKKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSK- 497 (507)
Q Consensus 428 ~g~L~V~v~~a~~L~~~------~~~dPyv~v~~~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~- 497 (507)
+..|+|+|++|+||+.. +.+||||++.+++ ++++|++++++.||.|||.|.|.+.++ ..+.|.|+|||+
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC
Confidence 56899999999999863 5799999999976 567999999999999999999999865 456899999999
Q ss_pred --CCCeeeeEe
Q 010550 498 --RTGVIGACG 506 (507)
Q Consensus 498 --~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 81 ~~~d~~lG~~~ 91 (126)
T d1rlwa_ 81 YVMDETLGTAT 91 (126)
T ss_dssp SSCCEEEEEEE
T ss_pred CCCCCeEEEEE
Confidence 788999985
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.45 E-value=1.1e-13 Score=117.41 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=67.4
Q ss_pred CceEEEEEEeeeecCCC--------------CCCCCcEEEEEEcCeE-EEeeeecCCCCCcccceEEEEecCCCCCceEE
Q 010550 427 GAGLLSVLVQGAEDVEG--------------ENHNNPYAIILYKGDK-KRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIH 491 (507)
Q Consensus 427 ~~g~L~V~v~~a~~L~~--------------~~~~dPyv~v~~~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~ 491 (507)
-+|.|.|+|.+|+||++ .+.+||||++++++++ .+|++++++.||+|||.|.|.+.+. +.|.
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---~~l~ 80 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC---CceE
Confidence 47999999999999974 2468999999999876 4899999999999999999999653 6899
Q ss_pred EEEEEC----CCCeeeeEe
Q 010550 492 IEVMSK----RTGVIGACG 506 (507)
Q Consensus 492 v~V~d~----~~~~iG~~~ 506 (507)
|+|||+ +|++||+|.
T Consensus 81 i~V~d~~~~~~d~~iG~~~ 99 (136)
T d1gmia_ 81 LAVFHDAPIGYDDFVANCT 99 (136)
T ss_dssp EEEEECCSSSSCEEEEEEE
T ss_pred EEEEEecCCCCceeEEEEE
Confidence 999998 678999985
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2.1e-14 Score=123.00 Aligned_cols=92 Identities=18% Similarity=0.363 Sum_probs=73.7
Q ss_pred ccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcccCCCceEEEEEEeeeecCCCC---CCCCcEEEEEEcC
Q 010550 381 KQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG 457 (507)
Q Consensus 381 ~~~G~i~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~a~~L~~~---~~~dPyv~v~~~~ 457 (507)
...|+|++++.|.. |.|.|+|++|+||+.+ +.+||||++++..
T Consensus 4 p~~G~l~lsl~y~~----------------------------------~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~ 49 (142)
T d1rh8a_ 4 PITGEIQLQINYDL----------------------------------GNLIIHILQARNLVPRDNNGYSDPFVKVYLLP 49 (142)
T ss_dssp CCCCEEEEEEEEET----------------------------------TEEEEEEEEEESCCCCSSSSCSCCEEEEEETT
T ss_pred CcceEEEEEEEEeC----------------------------------CEEEEEEEEeECCCCcCCCCCCCcCEEEEEec
Confidence 46799999998841 3599999999999864 5799999999942
Q ss_pred --------------eEEEeeeecCCCCCcccceEEEEecCCC--CCceEEEEEEEC----CCCeeeeEe
Q 010550 458 --------------DKKRTKMIRKTRDPAWNEEFQFMLDEPP--LHEKIHIEVMSK----RTGVIGACG 506 (507)
Q Consensus 458 --------------~~~kT~v~~~t~nP~wnE~f~f~v~~~~--~~~~L~v~V~d~----~~~~iG~~~ 506 (507)
.++||++++++.||.|||.|.|.+.... ....|.|+|||+ ++++||+|.
T Consensus 50 ~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~ 118 (142)
T d1rh8a_ 50 GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118 (142)
T ss_dssp SSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEE
T ss_pred CcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEE
Confidence 1247999999999999999999743321 234899999996 678999985
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=7.1e-13 Score=111.63 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=63.2
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcC-----eEEEeeeecCC-CCCcccceEEEEecCCCCCceEEEEEEEC
Q 010550 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKG-----DKKRTKMIRKT-RDPAWNEEFQFMLDEPPLHEKIHIEVMSK 497 (507)
Q Consensus 429 g~L~V~v~~a~~L~~-----~~~~dPyv~v~~~~-----~~~kT~v~~~t-~nP~wnE~f~f~v~~~~~~~~L~v~V~d~ 497 (507)
..|.|+|++|+||+. .+.+||||++++.+ ++++|++++++ .||.|||+|+|.+..+ ..+.|.++|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence 469999999999973 24689999999943 56799988765 7999999999998876 346899999998
Q ss_pred ----CCCeeeeEe
Q 010550 498 ----RTGVIGACG 506 (507)
Q Consensus 498 ----~~~~iG~~~ 506 (507)
+|++||++.
T Consensus 83 d~~~~d~~iG~~~ 95 (131)
T d1qasa2 83 DSSSKNDFIGQST 95 (131)
T ss_dssp CTTTCCEEEEEEE
T ss_pred cCCCCCcEEEEEE
Confidence 578999985
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3e-12 Score=105.99 Aligned_cols=87 Identities=24% Similarity=0.450 Sum_probs=66.7
Q ss_pred EEEEEEEEeccccccCcCCCCCcEEEEEEcCc---cCCceeee--ecCCCCCCeEeeE-EEE-EeecCCCCeEEEEEEEc
Q 010550 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE---KLPWKKTT--VKKKNLNPEWNEN-FKL-VVKEPESQILQLQVFDW 337 (507)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~T~--v~~~t~nP~Wne~-f~f-~v~~~~~~~L~v~V~d~ 337 (507)
+|+|+|++|++|+.+ +.||||++++-+. ...+.+|+ +.+++.||.|||+ |.| .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999865 4799999998431 12223333 3468999999975 444 35555667899999997
Q ss_pred CCCCCCCeeEEEEEECcccCCC
Q 010550 338 DKVGGHDRLGMQLVPLKLLTPH 359 (507)
Q Consensus 338 ~~~~~d~~lG~~~i~l~~l~~~ 359 (507)
+ |++||++.+|++.+..+
T Consensus 78 d----~~~lG~~~ipl~~l~~G 95 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSG 95 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCE
T ss_pred C----CCEEEEEEEEcccCcCC
Confidence 5 68999999999999876
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.1e-11 Score=102.82 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=56.6
Q ss_pred EEEEeeeecCCC-CCCCCcEEEEEEcCe-----EEEeeeecCCCCCcccceEEEEecCCCCCceEEEEEEECCCCeeeeE
Q 010550 432 SVLVQGAEDVEG-ENHNNPYAIILYKGD-----KKRTKMIRKTRDPAWNEEFQFMLDEPPLHEKIHIEVMSKRTGVIGAC 505 (507)
Q Consensus 432 ~V~v~~a~~L~~-~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~~L~v~V~d~~~~~iG~~ 505 (507)
.+.++.+..++. .+.+||||+|++++. .++|+++++|+||+|||+|+|.+.+. +.|.|.|||++++++|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~---~~l~i~V~d~dd~~~g~~ 84 (123)
T d1bdya_ 8 SFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAAEDPMSEV 84 (123)
T ss_dssp EEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT---CEEEEEEEEETTEEEEEE
T ss_pred EEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc---cEEEEEEEEccccccCcc
Confidence 344444444443 357999999999653 35799999999999999999999763 689999999988899976
Q ss_pred e
Q 010550 506 G 506 (507)
Q Consensus 506 ~ 506 (507)
.
T Consensus 85 ~ 85 (123)
T d1bdya_ 85 T 85 (123)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.1e-10 Score=96.33 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=56.9
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcC------eEEEeee--ecCCCCCcccce-EEEE-ecCCCCCceEEEEEEECCC
Q 010550 430 LLSVLVQGAEDVEGENHNNPYAIILYKG------DKKRTKM--IRKTRDPAWNEE-FQFM-LDEPPLHEKIHIEVMSKRT 499 (507)
Q Consensus 430 ~L~V~v~~a~~L~~~~~~dPyv~v~~~~------~~~kT~v--~~~t~nP~wnE~-f~f~-v~~~~~~~~L~v~V~d~~~ 499 (507)
.|.|+|.+|++|+.+ ..||||+|++.| ++++|++ ..++.||.|||. |.|. +..++ -..|++.|||++|
T Consensus 2 tl~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~-l~~L~f~V~D~d~ 79 (122)
T d2zkmx2 2 TLSITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE-LASLRVAVMEEGN 79 (122)
T ss_dssp EEEEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG-GCEEEEEEEETTT
T ss_pred EEEEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc-ccEEEEEEECCCC
Confidence 489999999999874 689999999943 2344444 356899999976 4443 44442 2489999999999
Q ss_pred CeeeeEe
Q 010550 500 GVIGACG 506 (507)
Q Consensus 500 ~~iG~~~ 506 (507)
++||++.
T Consensus 80 ~~lG~~~ 86 (122)
T d2zkmx2 80 KFLGHRI 86 (122)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9999974
|