Citrus Sinensis ID: 010551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Secondary Structure (PSIPRED)
ccccEEEEEcccccEEEEcccccccccccccEEEEEccEEEEEcccccccccccEEEEEcccccEEcEEEcccccccccccccccccccccccEEEEEEccEEEEEEcccccccccEEEEEEEcccccEEEEcccccccccccccEEEEEccEEEEEccccccccccccEEEEEccccEEEEEEccccccccccccEEEEEccEEEEEEcccccccccccEEEEEcccccEEEccccccccccccccEEEEEccEEEEEEccccccccccEEEEEcccccEEEEcccccccccccccccEEEEEEEcccEEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccEEEEccccccccccccccEEEEEccEEEEEEcccccccccEEEEEcccccEEEEEccccccccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEcccccEEEEccccccccccccccEEEEEccEEEEEEcccccccccccEEEEcccccEEEEccccccccccccccEEEEEcccEEEEEEccccccccccEEEEcccccEEEEccccccccccccccEEEEEccEEEEEEccccccccccEEEEcccccEEEEEcccccccccccccccEEEEEEEEccEEEEEEcccccccccEEEEcccccccccccEEccccccccccEccHHHHHccccccccccccHHHccccccccccccccccHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEccc
Coil and Loop (DISEMBL)
mdsgswhlelpydlwvtlpvsgarpsprykhaaaVFDQklyivggsrngrflsdvqVFDLRSLAWSNLRLEteldadktedsgllevlppmsdhcmvkWGTKLLILgghykkssdSMIVRFIDLETNlcgvmetsgkvpvtrgghsvTLVGSRLiifggedrsrkllndvhfldletmtwdavevtqtppaprydhsaalHANRYLIVFGgcshsiffndlhvldlqtnewsqpeikgdlvtgraghagitidenwyivgggdnnngcQETIVLNMTKLAWSILTSvkgrnplaseglSVCSAIIEGEHHLVAfggyngkynnEVFVMrlkprdiprpkifqspAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Flexible Loop (DISEMBL)
mdsgswhlELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLeteldadktedSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSgkvpvtrgghsvtlVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrtdidaikedkrvlelsltevrtensrfrekideVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAtsvqtqgsggvWRWIAGGQ
Low Complexity Region (SEG)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPaaaaaaasvtaayalaKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Disordered region (IsUnstruct)
*****WHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDA*****SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKS**LDI*******FAGI*******************************************************************RCFKLEAQI*******************************************GVWRWI****
Disordered Region (DISOPRED)
MDSGSWHLELPYDLWVTLPV***RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT**SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS*****PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPR********************ALAKSE*LD**************************************************************************************************************************************RWIAGG*
Disordered Region (DISEMBL)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ************AAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDE*******************VAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS****************SGGVWRWIAGGQ
Disordered Region (DISPRO)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAG*GNDLS***VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAT*******GG*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTExxxxxxxxxxxxxxxxxxxxxLSSVQGQLVAERSRCFKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTQGSGGVWRWIAGGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
Q9MA55	668	Acyl-CoA-binding domain-c	no	no	0.960	0.729	0.461	1e-128
Q8RWD9	648	Acyl-CoA-binding domain-c	no	no	0.934	0.731	0.447	1e-120
Q7M3S9	943	RING finger protein B OS=	no	no	0.465	0.250	0.306	4e-25
Q5EA50	372	Rab9 effector protein wit	yes	no	0.508	0.693	0.262	1e-22
Q4V8F4	372	Rab9 effector protein wit	yes	no	0.504	0.688	0.282	1e-21
Q8VCH5	380	Rab9 effector protein wit	yes	no	0.504	0.673	0.278	2e-21
Q7Z6M1	372	Rab9 effector protein wit	yes	no	0.453	0.618	0.288	5e-21
Q9BQ90	382	Kelch domain-containing p	no	no	0.546	0.725	0.283	4e-19
P87061	1147	Tip elongation aberrant p	yes	no	0.554	0.244	0.264	2e-18
Q8VEM9	382	Kelch domain-containing p	no	no	0.546	0.725	0.283	2e-18

>sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1

 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/498 (46%), Positives = 332/498 (66%), Gaps = 11/498 (2%)

Query: 12  YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 71
           Y+ W     SG RP  RY+H AAV   K+YI GG+ NGR+L D+ V DL+S  WS  R+E
Sbjct: 168 YNQWTAPQTSGQRPKARYEHGAAVIQDKMYIYGGNHNGRYLGDLHVLDLKSWTWS--RVE 225

Query: 72  TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131
           T++ A +++++    +L P + H ++ W  KLL +GGH K  S+SM V+  D  T    +
Sbjct: 226 TKV-ATESQETSTPTLLAPCAGHSLIAWDNKLLSIGGHTKDPSESMQVKVFDPHTITWSM 284

Query: 132 METSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 191
           ++T GK PV+RGG SVT+VG  L+IFGG+D  R LLND+H LDL+TMTWD ++     P+
Sbjct: 285 LKTYGKPPVSRGGQSVTMVGKTLVIFGGQDAKRSLLNDLHILDLDTMTWDEIDAVGVSPS 344

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
           PR DH+AA+HA R+L++FGG SH+  F+DLHVLDLQT EWS+P  +GD  T RAGHAG+T
Sbjct: 345 PRSDHAAAVHAERFLLIFGGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRAGHAGVT 404

Query: 252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
           I ENW+IVGGGDN +G  E++VLNM+ LAWS++ SV+GR PLASEGLS+  +   GE  L
Sbjct: 405 IGENWFIVGGGDNKSGASESVVLNMSTLAWSVVASVQGRVPLASEGLSLVVSSYNGEDVL 464

Query: 312 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTL 371
           VAFGGYNG+YNNE+ +++   +   + K  ++P   + +A   A     +SE +++ +  
Sbjct: 465 VAFGGYNGRYNNEINLLKPSHKSTLQTKTLEAPLPGSLSAVNNATTRDIESE-VEVSQEG 523

Query: 372 SSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS 427
             +   + N       E +    I  IK +K  LE SL + R +  + R+++ E    ++
Sbjct: 524 RVREIVMDNVNPGSKVEGNSERIIATIKSEKEELEASLNKERMQTLQLRQELGEAELRNT 583

Query: 428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 487
           +L KEL SV+GQL AE+SRCFKLE  +AEL++ L++ +T++ E+++L++QK+A EQ    
Sbjct: 584 DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTLETLQKELELLQRQKAASEQA--- 640

Query: 488 ATSVQTQGSGGVWRWIAG 505
           A + + QGSGGVW W+AG
Sbjct: 641 AMNAKRQGSGGVWGWLAG 658

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1

 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/494 (44%), Positives = 318/494 (64%), Gaps = 20/494 (4%)

Query: 12  YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 71
           Y+ W     SG  P  RY+H AAV   K+Y+ GG+ NGR+L D+ V DL++  WS  R+E
Sbjct: 169 YNQWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWS--RVE 226

Query: 72  TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131
           T++     E S   + L   + H ++ W  +LL +GGH K  S+SM V   DL      +
Sbjct: 227 TKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSI 285

Query: 132 METSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 191
           ++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H LDL+TMTW+ ++   +PP 
Sbjct: 286 LKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPT 345

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
           PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS+   +GD  T RAGHAG+T
Sbjct: 346 PRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVT 405

Query: 252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
           I ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   PLASEGLS+  +   GE  +
Sbjct: 406 IGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIV 465

Query: 312 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTL 371
           VAFGGYNG YNNEV V++   +   + KI  + A   + ++V  A         DI   +
Sbjct: 466 VAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSAVNNATT------RDIESEI 519

Query: 372 SSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 431
             K  G  + +        I  +K +K  +E SL + + +  + +E++ E+++ ++EL K
Sbjct: 520 --KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYK 569

Query: 432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSV 491
           EL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E+++L++Q+ A   E     + 
Sbjct: 570 ELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQR-AVASEQAATMNA 628

Query: 492 QTQGSGGVWRWIAG 505
           + Q SGGVW W+AG
Sbjct: 629 KRQSSGGVWGWLAG 642

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2

 Score =  116 bits (291), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 120/271 (44%), Gaps = 35/271 (12%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQK---------LYIVGGSRNGRFLSDVQVFDL---RS 62
           W  +   G  PS RY H+A ++  +         +   GG    +  SD+ +  +   RS
Sbjct: 55  WSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRS 114

Query: 63  LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRF 121
             W  +  ++               +   + H  V +   L++ GGH   KS     V  
Sbjct: 115 FIWKQVTTKS---------------IEGRAGHTAVVYRQNLVVFGGHNNHKSKYYNSVLL 159

Query: 122 IDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTW 180
             LE+N        G +P  R  HS   V + ++ IFGG D  +K  ND+++LDLET  W
Sbjct: 160 FSLESNEWRQQVCGGVIPSARATHSTFQVNNNKMFIFGGYD-GKKYYNDIYYLDLETWIW 218

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ-TNE--WSQPEI 236
             VE   TPP PR  HSA +  N  L++FGGC S S F ND+H+L ++  NE  W QP  
Sbjct: 219 KKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGSDSNFLNDIHILHIEGANEYRWEQPSY 278

Query: 237 KG-DLVTGRAGHAGITIDENWYIVGGGDNNN 266
            G ++   R  H    I    YI  G  + N
Sbjct: 279 LGLEIPQARFRHTTNFIGGRVYIYAGTGSGN 309

Dictyostelium discoideum (taxid: 44689)

>sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 24/282 (8%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAW 65
           + W TL + G  P  R  H+ +           K++IVGG+   R  SDV   DL +  W
Sbjct: 16  ETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTHQW 75

Query: 66  SNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 125
                E  L   + E +  +    P S          + + GG   +S +   ++ ++ +
Sbjct: 76  DLATSEGLLP--RYEHTSFIPSCTPHS----------IWVFGG-ADQSGNRNCLQVLNPD 122

Query: 126 TNLCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDA 182
           T      E +G  P  R  H S   +G +L +FGG +R  + + DV  H  D  T+TW  
Sbjct: 123 TRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQ 182

Query: 183 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 242
            E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   T
Sbjct: 183 PETHGKPPSPRHGH-VMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPT 241

Query: 243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
           G A H+ + + ++ Y+ GG             ++ K  W++L
Sbjct: 242 GCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLL 283

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Bos taurus (taxid: 9913)

>sp|Q4V8F4|RABEK_RAT Rab9 effector protein with kelch motifs OS=Rattus norvegicus GN=Rabepk PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 121/280 (43%), Gaps = 24/280 (8%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
           W TL   G +P PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct: 18  WYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDT 77

Query: 68  LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
              E  L   + E +  L    P S          + + GG   +S +   ++ ++ E  
Sbjct: 78  ATREGLLP--RYEHASFLPSCSPHS----------IWVFGG-ADQSGNRNCLQVMNPEAR 124

Query: 128 LCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                E +G  P  R  H S   +G+ L +FGG +R  + + DV  H  D  T+TW   E
Sbjct: 125 TWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPE 184

Query: 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
              +PP+PR+ H A + A   L + GG +   FF+DLH +D+    W +    G    G 
Sbjct: 185 THGSPPSPRHGH-AMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGC 243

Query: 245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
           A HA + +  + Y+ GG             +  K  W+IL
Sbjct: 244 AAHAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTIL 283

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Rattus norvegicus (taxid: 10116)

>sp|Q8VCH5|RABEK_MOUSE Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 24/280 (8%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
           W TL   G RP PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct: 26  WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDT 85

Query: 68  LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
              E  L   + E +  L    P S          + + GG   +S +   ++ +  E  
Sbjct: 86  ATREGLLP--RYEHASFLPSCSPHS----------IWVFGG-ADQSGNRNCLQVMSPEDR 132

Query: 128 LCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                E +G  P  R  H S   +G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct: 133 TWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPE 192

Query: 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
              +PP+PR+ H   + A   L + GG +   FF+DLH +D+    W +    G +  G 
Sbjct: 193 THGSPPSPRHGH-VMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGC 251

Query: 245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
           A HA + +  + Y+ GG             +  K  W++L
Sbjct: 252 AAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVL 291

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Mus musculus (taxid: 10090)

>sp|Q7Z6M1|RABEK_HUMAN Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1

 Score =  103 bits (256), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 30/260 (11%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
           W TL V G  P  R  H+ +           K++IVGG+   R  SDV   DL    W  
Sbjct: 18  WYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKHQW-- 75

Query: 68  LRLETELDADKTEDSGLLEVLPPMSDHC-MVKWGT--KLLILGGHYKKSSDSMIVRFIDL 124
                +LD  K    GLL    P  +H   +   T  ++ + GG   +S +   ++ ++ 
Sbjct: 76  -----DLDTCK----GLL----PRYEHASFIPSCTPDRIWVFGG-ANQSGNRNCLQVLNP 121

Query: 125 ETNLCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLND--VHFLDLETMTWD 181
           ET      E +   P  R  H S   +G++L +FGG +R  + + D  +H  D  T+TW 
Sbjct: 122 ETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWS 181

Query: 182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV 241
             E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   
Sbjct: 182 QPETLGNPPSPRHGH-VMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAP 240

Query: 242 TGRAGHAGITIDENWYIVGG 261
            G A H+ + + ++ YI GG
Sbjct: 241 AGCAAHSAVAMGKHVYIFGG 260

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Homo sapiens (taxid: 9606)

>sp|Q9BQ90|KLDC3_HUMAN Kelch domain-containing protein 3 OS=Homo sapiens GN=KLHDC3 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 126/307 (41%), Gaps = 30/307 (9%)

Query: 28  RYKHAAAVFDQKLYIVGGSRNGRFLS-----DVQVFDLRSLAWSNLRLETELDADKTEDS 82
           R  HAA     ++Y  GG  +G         DV +F+  SL W      T+L   K+   
Sbjct: 14  RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVKSAIR 67

Query: 83  GLLEVLPPMS-DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVT 141
           G   V+P M   H  V     +L+ GG         ++   D+ T+       SG VP  
Sbjct: 68  GQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGA 127

Query: 142 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL 200
           R GHS  ++G  + IFGG E ++    ND+H LD  TMTW  +    +P   R  HSA +
Sbjct: 128 RDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATM 187

Query: 201 HANRYLIVFGG---------CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
             + ++ VFGG          ++ I+ N + V D +T  W        L  GR  H+   
Sbjct: 188 LGS-HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFG 246

Query: 252 IDENWYIVGGGDN--NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 309
            +   YI GG +   N    +    N     W  +   KG+ P        C   I G+ 
Sbjct: 247 YNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEP-KGKGPCPRRRQCCC---IVGD- 301

Query: 310 HLVAFGG 316
            +V FGG
Sbjct: 302 KIVLFGG 308

May be involved in meiotic recombination process.

Homo sapiens (taxid: 9606)

>sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 44/325 (13%)

Query: 15  WVTLPVSGARPS-PRYKHAAAVF---DQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLR 69
           W  L V G+    PRY HA+ ++    Q++YI GG + + +  +D+ V +L +  +++LR
Sbjct: 66  WSKLTVRGSSNVLPRYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLR 125

Query: 70  LETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG---HYKKSSDSMIVRFIDLET 126
                         L E   P   H  +  G   ++ GG   H         +  ++  +
Sbjct: 126 -------------SLGETPSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSS 172

Query: 127 NLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHFLDLETMT--- 179
            +      SG  P  R GH+++ +GS++ +FGG     +LL    ND+   DL  +    
Sbjct: 173 LVWQKANASGARPSGRYGHTISCLGSKICLFGG-----RLLDYYFNDLVCFDLNNLNTSD 227

Query: 180 --WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK 237
             W+   V   PP  R  H A   +++ L +FGG   + FFNDL     + + WS+ E  
Sbjct: 228 SRWELASVVNDPPPARAGHVAFTFSDK-LYIFGGTDGANFFNDLWCYHPKQSAWSKVETF 286

Query: 238 GDLVTGRAGHAGITIDENWYIVGG-GDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLAS 295
           G     RAGHA   ++   Y+ GG   +     +     ++   W  L+ +    +P +S
Sbjct: 287 GVAPNPRAGHAASVVEGILYVFGGRASDGTFLNDLYAFRLSSKHWYKLSDLPFTPSPRSS 346

Query: 296 EGLSVCSAIIEGEHHLVAFGGYNGK 320
             LS CS +      LV  GG  GK
Sbjct: 347 HTLS-CSGLT-----LVLIGGKQGK 365

Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8VEM9|KLDC3_MOUSE Kelch domain-containing protein 3 OS=Mus musculus GN=Klhdc3 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 122/307 (39%), Gaps = 30/307 (9%)

Query: 28  RYKHAAAVFDQKLYIVGGSRNGRFLS-----DVQVFDLRSLAWSNLRLETELDADKTEDS 82
           R  HAA     ++Y  GG  +G         DV +F+  SL W      T+L   +    
Sbjct: 14  RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVRPAVR 67

Query: 83  GLLEVLPPMS-DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVT 141
           G   V+P M   H  V     + + GG         ++   D+ T+       SG VP  
Sbjct: 68  GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGA 127

Query: 142 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL 200
           R GHS  ++G  + IFGG E  +    ND+H LD  TMTW  V     P   R  HSA +
Sbjct: 128 RDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATM 187

Query: 201 HANRYLIVFGG---------CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
             N ++ VFGG          ++ I+ N + V D +T  W        L  GR  H+   
Sbjct: 188 LGN-HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRRSHSAFG 246

Query: 252 IDENWYIVGGGDN--NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 309
            +   YI GG +   N    +    N     W  +   KG+ P        C   I G+ 
Sbjct: 247 YNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEP-KGKGPCPRRRQCCC---IVGD- 301

Query: 310 HLVAFGG 316
            +V FGG
Sbjct: 302 KIVLFGG 308

May be involved in meiotic recombination process.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
224113141	512	predicted protein [Populus trichocarpa]	0.992	0.982	0.742	0.0
225448900	508	PREDICTED: acyl-CoA-binding domain-conta	0.994	0.992	0.724	0.0
449465316	509	PREDICTED: acyl-CoA-binding domain-conta	0.988	0.984	0.673	0.0
15237715	514	kelch repeat-containing protein [Arabido	0.982	0.968	0.668	0.0
255583742	512	acyl-CoA binding protein, putative [Rici	0.877	0.869	0.758	0.0
15724206	514	AT5g04420/T32M21_20 [Arabidopsis thalian	0.982	0.968	0.666	0.0
297810527	514	kelch repeat-containing protein [Arabido	0.982	0.968	0.668	0.0
356576361	504	PREDICTED: acyl-CoA-binding domain-conta	0.988	0.994	0.640	0.0
115449833	519	Os02g0822800 [Oryza sativa Japonica Grou	0.970	0.947	0.533	1e-144
357137701	523	PREDICTED: acyl-CoA-binding domain-conta	0.966	0.936	0.526	1e-138

>gi|224113141|ref|XP_002316404.1| predicted protein [Populus trichocarpa] gi|222865444|gb|EEF02575.1| predicted protein [Populus trichocarpa]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/505 (74%), Positives = 428/505 (84%), Gaps = 2/505 (0%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           M+  +W  +LPY+ WV +PVSG RPS RYKHAA V D+KLYI GGSR GR+L DVQVFD 
Sbjct: 10  MEVANWFSQLPYEQWVPIPVSGTRPSARYKHAAGVADEKLYIAGGSRTGRYLPDVQVFDF 69

Query: 61  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 120
           R L WS+L+L++E D  K+E++G  EVLP  SDH MVKWG KLL+LGGH K +SDSM VR
Sbjct: 70  RGLVWSSLKLKSEADGGKSEENGAQEVLPATSDHSMVKWGNKLLLLGGHSKTTSDSMTVR 129

Query: 121 FIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
           FIDLET+ CG +ETSG  PV RGGHSVTLVGSRLIIFGGEDR+R+LLNDV+ LDLETMTW
Sbjct: 130 FIDLETHACGFIETSGNAPVARGGHSVTLVGSRLIIFGGEDRNRRLLNDVYALDLETMTW 189

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
           D V   QTPPAPR+DH+AA++   YL++FGGCSHSIFFNDLHVLDLQT EWSQPE++GDL
Sbjct: 190 DVVVARQTPPAPRFDHTAAINREHYLLIFGGCSHSIFFNDLHVLDLQTMEWSQPEVQGDL 249

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
           VT RAGHAG+TI ENWYIVGGGDN NGC ET+VLNM+KL WS LTSVK R+PLASEGLSV
Sbjct: 250 VTPRAGHAGVTIGENWYIVGGGDNKNGCPETLVLNMSKLTWSALTSVKERDPLASEGLSV 309

Query: 301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 360
           CSA+I GE HLVAFGGYNGKYNNEVFVMRLKP D+ RPKIFQSPAAAAAAASVTAAYALA
Sbjct: 310 CSALINGERHLVAFGGYNGKYNNEVFVMRLKPSDVSRPKIFQSPAAAAAAASVTAAYALA 369

Query: 361 KSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKID 420
           KSEKLD   +L+    G+GN+ SE D+  +IDA+KE+K+ LEL LTEVR ENSR  EK+D
Sbjct: 370 KSEKLDF-SSLNLNSNGVGNNPSELDLAFEIDALKEEKKELELFLTEVRAENSRLTEKVD 428

Query: 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 480
           EVN TH+ELSKEL SVQGQL AERSRCFKLEAQIAELQK+LES Q+IENEVQ+LR+QKSA
Sbjct: 429 EVNGTHAELSKELHSVQGQLAAERSRCFKLEAQIAELQKILESLQSIENEVQLLRRQKSA 488

Query: 481 FEQEMERATSVQTQGSGGVWRWIAG 505
            EQE+ER ++ Q QGSGGVWRWIAG
Sbjct: 489 LEQEIER-SAAQRQGSGGVWRWIAG 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448900|ref|XP_002264719.1| PREDICTED: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|296085942|emb|CBI31383.3| unnamed protein product [Vitis vinifera]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/505 (72%), Positives = 421/505 (83%), Gaps = 1/505 (0%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           MD  +WH EL YD W+ LPVSG RPS RYKHAAAV D+KLYI GGSRNGR+LSDVQVFDL
Sbjct: 1   MDIDNWHSELEYDQWLRLPVSGPRPSARYKHAAAVVDEKLYISGGSRNGRYLSDVQVFDL 60

Query: 61  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 120
           RSLAWS L+L+ E +ADK E++ L EV P  S H M+KWG KLLILGGH K SSD + VR
Sbjct: 61  RSLAWSALKLKMESNADKVEENNLQEVFPATSGHNMIKWGNKLLILGGHSKNSSDGVTVR 120

Query: 121 FIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
            IDLET  CGV++TSGKVPV RGG SVTLVGSRLI+FGGEDRSR LLNDVH LDL+TMTW
Sbjct: 121 AIDLETQQCGVIKTSGKVPVARGGQSVTLVGSRLIMFGGEDRSRHLLNDVHVLDLDTMTW 180

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
           D VE TQTPPAPR+DH+AA+HA RYL++FGGCSHSIFFNDLH+LDLQT EWSQP+I+GDL
Sbjct: 181 DVVEATQTPPAPRFDHTAAVHAERYLLIFGGCSHSIFFNDLHILDLQTMEWSQPQIQGDL 240

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
           VT RAGHAG TIDENWYIVGGGDN +G  ET+V NM+KL WS+LT VK R+PLASEGL+V
Sbjct: 241 VTPRAGHAGTTIDENWYIVGGGDNRSGTPETLVFNMSKLGWSVLTRVKERDPLASEGLNV 300

Query: 301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 360
           CSA + GE HLV FGGYNGKYNNEVF+M+ KP D  RPKIFQSPAAAAAAASVTAAYALA
Sbjct: 301 CSASVNGEKHLVTFGGYNGKYNNEVFIMKPKPTDSTRPKIFQSPAAAAAAASVTAAYALA 360

Query: 361 KSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKID 420
           KSEKLD  +T  S F G+  + S +D   +I+AI+E+ +VLE S+ EV+ ENSR +EKID
Sbjct: 361 KSEKLDFIETEDSNFGGVKENNSAQDFSIEINAIREENKVLESSVAEVKAENSRLKEKID 420

Query: 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 480
           ++N T++ELSKEL SVQGQLV ERSRC KLEAQIAELQKMLE+ Q+IE+EVQ+LR+QKS 
Sbjct: 421 DINGTYAELSKELHSVQGQLVVERSRCSKLEAQIAELQKMLETLQSIEDEVQLLRRQKSM 480

Query: 481 FEQEMERATSVQTQGSGGVWRWIAG 505
            E+ ME A + Q QGSGGVWRWIAG
Sbjct: 481 LERNMEVA-AAQRQGSGGVWRWIAG 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465316|ref|XP_004150374.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] gi|449523517|ref|XP_004168770.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/511 (67%), Positives = 412/511 (80%), Gaps = 10/511 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           MD  SW   L +D WV LPVSG+RP  RYKHAAAV DQKLYIVGGSRNGR+LSDVQV DL
Sbjct: 1   MDVDSWQWGLAFDQWVALPVSGSRPPARYKHAAAVVDQKLYIVGGSRNGRYLSDVQVLDL 60

Query: 61  RSLAWSNLRLETELDADKTEDSG-LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIV 119
            +L+WS+++L+     + ++ +G L+E LPP S H MVKW  KL++LGG+ K+SSD ++V
Sbjct: 61  SNLSWSSVKLQMNPGVENSDGNGSLVEALPPASGHSMVKWDKKLIVLGGNLKRSSDRILV 120

Query: 120 RFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 179
             IDLET+   VMET+G +PV R GHS TL GS++++FGGED SRKLLND+H LDLE +T
Sbjct: 121 HCIDLETHTWSVMETTGNIPVARAGHSATLFGSKIMMFGGEDSSRKLLNDIHVLDLEALT 180

Query: 180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD 239
           WD VE  Q+PPAPR+DH+AALHA  YL+VFGGCSHS FF DLHVLD  T EWSQP+++GD
Sbjct: 181 WDEVETKQSPPAPRFDHTAALHAEHYLLVFGGCSHSAFFRDLHVLDFHTMEWSQPQLQGD 240

Query: 240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 299
           LVT RAGHAGITIDENWYIVGGGDN NGC ETIVLNM+KL+W  L SVK R PLASEG+S
Sbjct: 241 LVTPRAGHAGITIDENWYIVGGGDNKNGCPETIVLNMSKLSWLALRSVKQREPLASEGIS 300

Query: 300 VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYAL 359
           +  A I+ E +LVAFGGYNGKYNNEVFVMR KPRD  RPKIFQSPAAAAAAASVTAAYAL
Sbjct: 301 ISLATIDQEKYLVAFGGYNGKYNNEVFVMRPKPRDSSRPKIFQSPAAAAAAASVTAAYAL 360

Query: 360 AKSEKLDIPKTLSSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRF 415
           AK+EKLD      S   G+ N    + S+ +   ++ AI+E+K  LEL+L+EV++ENS+ 
Sbjct: 361 AKTEKLDF-----SMIEGVSNGRHQNHSQPNGAIELKAIREEKAKLELTLSEVQSENSKL 415

Query: 416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILR 475
           +++IDEVNSTH+ELSKEL SVQ QL+AERSRCFKLEAQIAELQKMLES Q+IENE+ +LR
Sbjct: 416 KQEIDEVNSTHAELSKELQSVQSQLIAERSRCFKLEAQIAELQKMLESMQSIENEIHLLR 475

Query: 476 QQKSAFEQEMERATSVQTQGSGGVWRWIAGG 506
           +QKSA E+ ME A++VQ QGSGGVWRWIAGG
Sbjct: 476 EQKSALEKHMEAASTVQRQGSGGVWRWIAGG 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237715|ref|NP_196062.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326940|ref|NP_001031832.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326969|ref|NP_001031833.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|7406446|emb|CAB85548.1| putative protein [Arabidopsis thaliana] gi|53850551|gb|AAU95452.1| At5g04420 [Arabidopsis thaliana] gi|63003778|gb|AAY25418.1| At5g04420 [Arabidopsis thaliana] gi|222424058|dbj|BAH19990.1| AT5G04420 [Arabidopsis thaliana] gi|332003357|gb|AED90740.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003358|gb|AED90741.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003359|gb|AED90742.1| kelch repeat-containing protein [Arabidopsis thaliana]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/504 (66%), Positives = 413/504 (81%), Gaps = 6/504 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 61  RSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
           RSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct: 68  RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query: 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
           M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct: 128 MLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query: 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 356
           GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 357 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
           YA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query: 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 477 QKSAFEQEMERATSVQTQGSGGVW 500
           Q+SA ++E +   +VQ QGS GVW
Sbjct: 488 QRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583742|ref|XP_002532624.1| acyl-CoA binding protein, putative [Ricinus communis] gi|223527644|gb|EEF29755.1| acyl-CoA binding protein, putative [Ricinus communis]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/451 (75%), Positives = 389/451 (86%), Gaps = 6/451 (1%)

Query: 5   SWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA 64
           +W  +L Y+ WV +PVSG RPS RYKHAAA+ D+KLY+ GGSRNGR+LSDVQVFDLRS  
Sbjct: 14  NWFSQLTYEQWVAIPVSGVRPSARYKHAAAIADEKLYVSGGSRNGRYLSDVQVFDLRSSV 73

Query: 65  WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 124
           WS+L+L+T+L ADK E++GL EVLP  SDH MV+W  KLL+LGGH KKSSD   +RFIDL
Sbjct: 74  WSSLKLKTDLHADKVEENGLQEVLPATSDHSMVQWENKLLLLGGHSKKSSD---MRFIDL 130

Query: 125 ETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 184
           ET+ CGVMETSGK PV RGGHS TLVGSRLI+FGGED SR+LLND++ LDLE MTWD +E
Sbjct: 131 ETHHCGVMETSGKAPVARGGHSATLVGSRLIVFGGEDGSRRLLNDLYALDLEKMTWDVLE 190

Query: 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
            TQTPPAPR+DH+A +HA RYLIVFGGCSHSIFFNDLHVLDLQT EWSQPE +GDLVT R
Sbjct: 191 TTQTPPAPRFDHTATIHAERYLIVFGGCSHSIFFNDLHVLDLQTMEWSQPETRGDLVTPR 250

Query: 245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAI 304
           AGHAGI IDENWYIVGGGDN NGC ET+VLNM+KLAWS LT+VKGR+PLASEGLSVCS +
Sbjct: 251 AGHAGIAIDENWYIVGGGDNKNGCPETLVLNMSKLAWSTLTNVKGRDPLASEGLSVCSTL 310

Query: 305 IEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEK 364
           I+GE HLVAFGGYNGKYNNEVF+MRLKPRD+ RPKIFQSPAAAAAAASVTAAYALAKSEK
Sbjct: 311 IDGEKHLVAFGGYNGKYNNEVFIMRLKPRDMLRPKIFQSPAAAAAAASVTAAYALAKSEK 370

Query: 365 LDIPK-TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 423
           LD     L+S+   + +  SE+D+ ++IDAIKEDK+VLE+SL EVR ENSR REKIDEVN
Sbjct: 371 LDFSNINLNSR--EVESHPSEQDITSEIDAIKEDKKVLEMSLAEVRAENSRLREKIDEVN 428

Query: 424 STHSELSKELSSVQGQLVAERSRCFKLEAQI 454
           STH+ELSKEL SVQGQLVAERSRCFKLE  +
Sbjct: 429 STHAELSKELHSVQGQLVAERSRCFKLEKSL 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15724206|gb|AAL06496.1|AF412043_1 AT5g04420/T32M21_20 [Arabidopsis thaliana]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/504 (66%), Positives = 412/504 (81%), Gaps = 6/504 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 61  RSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
           RSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct: 68  RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query: 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
           M+VRFIDLET+ CGV++  G VP +R GHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct: 128 MLVRFIDLETHSCGVIDVFGNVPASRDGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query: 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 356
           GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 357 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
           YA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query: 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 477 QKSAFEQEMERATSVQTQGSGGVW 500
           Q+SA ++E +   +VQ QGS GVW
Sbjct: 488 QRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810527|ref|XP_002873147.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318984|gb|EFH49406.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/504 (66%), Positives = 410/504 (81%), Gaps = 6/504 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 61  RSLAWSNLRLETELDADKT--EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
            SL WS+L+L TE  + +   ED G  L E  P +SDH M+KWG  LL++GGH KKSSD+
Sbjct: 68  TSLTWSSLKLITESSSAENIQEDDGSSLREAFPAISDHRMIKWGNMLLLIGGHSKKSSDN 127

Query: 117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
           + VRFIDLET+LCGV + SG VP +RGGHS+TLVGSR+++FGGED++R+LLND+H LDLE
Sbjct: 128 ISVRFIDLETHLCGVFDVSGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLDLE 187

Query: 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDIVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 356
           GLSVCSA + GE+ LVAFGGYNGKYNN+++VM LKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIYVMILKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 357 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
           YA+AKS+K D P   +    GIG+ L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGIGSSLPERDIRNRIDTIKEEKRSLESSVAETQVENAKLR 427

Query: 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 477 QKSAFEQEMERATSVQTQGSGGVW 500
           Q+S  + E E  T VQ QGSGGVW
Sbjct: 488 QRSVSD-EGEDGT-VQRQGSGGVW 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576361|ref|XP_003556301.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/509 (64%), Positives = 410/509 (80%), Gaps = 8/509 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           M+  +WH EL YD WV + VSGARP+ RYKHAAAV D+KLYI GGSRNGR LSDVQVFDL
Sbjct: 1   MEVNNWHKELKYDEWVPITVSGARPAARYKHAAAVVDEKLYIAGGSRNGRHLSDVQVFDL 60

Query: 61  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 120
           RSL WS+L+L+  +  D  +D    E+LP  S H M++WG KLL+LGG+ ++SS  + VR
Sbjct: 61  RSLTWSSLKLKANVRKD--DDDSSQEILPATSGHNMIRWGEKLLLLGGNSRESSAELTVR 118

Query: 121 FIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
           +ID+ET   GV++TSG VPV R G S +L GSR+I+FGGE+ SRKLLNDVH LDLE+MTW
Sbjct: 119 YIDIETCQFGVIKTSGDVPVARVGQSASLFGSRVILFGGEEMSRKLLNDVHVLDLESMTW 178

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
           + ++ TQTPPAPRYDHSAA+   RYL++FGGCSHSIFFNDLH+LD+QT EWSQP+ +GDL
Sbjct: 179 EMIKTTQTPPAPRYDHSAAIQGERYLLIFGGCSHSIFFNDLHLLDMQTMEWSQPQTQGDL 238

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
           V+ RAGH GITIDE+W IVGGGDN +GC ET+VL+M+KL WS+LT VK ++PL+SEGLSV
Sbjct: 239 VSPRAGHTGITIDESWLIVGGGDNRSGCPETLVLDMSKLVWSVLTVVKQKDPLSSEGLSV 298

Query: 301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 360
           CSA I GE +L+AFGGYNG+Y+NEVFVMR K +D  RPKIFQSPAAAAAAASVT+AYAL+
Sbjct: 299 CSATIGGEKYLLAFGGYNGRYSNEVFVMRPKAKDTMRPKIFQSPAAAAAAASVTSAYALS 358

Query: 361 KSEKLDIPK--TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREK 418
           KSEKLD  +   ++SK +  G+   + DV   ++AIKE+KR+LELS+ EVR ENS+   +
Sbjct: 359 KSEKLDFMQLDDINSKLSVNGH--HKDDVVDKVEAIKEEKRLLELSIAEVRAENSKLGGE 416

Query: 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK 478
           I+E+N+TH+EL+KEL SVQGQLVAERSRCF LEA+IAELQK+LES Q++E EVQ LR++K
Sbjct: 417 IEEINNTHAELTKELQSVQGQLVAERSRCFNLEAKIAELQKLLESMQSVEEEVQALREKK 476

Query: 479 SAFEQEMERATSVQTQGSGGVWRWIAGGQ 507
           SA +QEME A + +++ SG  WRW  G +
Sbjct: 477 SALDQEMELAATAESKSSG--WRWFGGSE 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449833|ref|NP_001048563.1| Os02g0822800 [Oryza sativa Japonica Group] gi|48716304|dbj|BAD22917.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|55773890|dbj|BAD72475.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|113538094|dbj|BAF10477.1| Os02g0822800 [Oryza sativa Japonica Group] gi|222623936|gb|EEE58068.1| hypothetical protein OsJ_08927 [Oryza sativa Japonica Group]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/499 (53%), Positives = 358/499 (71%), Gaps = 7/499 (1%)

Query: 11  PYDLWVTLPVSGA--RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
           PYD W+    +G   RPS RYKHAA V  +KLY+VGGSRNGR+LSD+QVFD R+L WS L
Sbjct: 16  PYDQWLPFSPAGGSPRPSARYKHAAEVVREKLYVVGGSRNGRYLSDIQVFDFRTLKWSAL 75

Query: 69  RLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS-SDSMIVRFIDLETN 127
               +      E++      P ++ H +V W   ++++ G+ + S S+ + V  I++ETN
Sbjct: 76  SAARDSSQLNIENNTTDPSFPALAGHSLVNWKKYIVVVAGNTRTSTSNKVSVWLINVETN 135

Query: 128 LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ 187
               ++T GKVP++RGG SV+LVGSRLI+FGGED  R+LLND+H LDLETM W+ V+  +
Sbjct: 136 SWSSVDTYGKVPISRGGQSVSLVGSRLIMFGGEDNKRRLLNDLHILDLETMMWEEVKTGK 195

Query: 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 247
             PAPRYDHSAA++A++YL++FGG SHS  F+D+++LDLQT EWSQP+ +G  +  R+GH
Sbjct: 196 GGPAPRYDHSAAVYADQYLLIFGGSSHSTCFSDIYLLDLQTMEWSQPDTQGAHINPRSGH 255

Query: 248 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG 307
           AG  IDENWYIVGGGDN +G  +TI++N +K  WS++TSV  R+PLA EGL++CS  ++G
Sbjct: 256 AGTMIDENWYIVGGGDNASGSTDTIMMNASKFVWSVVTSVPARDPLACEGLTLCSTTVDG 315

Query: 308 EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKL-D 366
           E  LVAFGGYNG+YNNE+FVM+LKPR++ +P++ QSPAAAAAAASVTAAYA+   EK  D
Sbjct: 316 EKFLVAFGGYNGQYNNEIFVMKLKPRNLVQPRLLQSPAAAAAAASVTAAYAVITDEKTRD 375

Query: 367 IPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTH 426
           I  T       +    S K + T++DA+  +K  LE  L EVR ENS+ ++++D V  +H
Sbjct: 376 IVATDDLDVKRVQPSGSSKQITTELDALNGEKGKLESRLAEVRDENSKLKDRLDMVKLSH 435

Query: 427 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486
            EL+KEL SVQ QL AE SRC KLE+QIA   K LES+ ++ENE+++LRQQ S  EQ M 
Sbjct: 436 GELTKELKSVQHQLAAEGSRCQKLESQIAAAHKRLESTDSLENELEVLRQQISQVEQTM- 494

Query: 487 RATSVQTQGSGGVWRWIAG 505
             T+ Q Q SGGVW+W+AG
Sbjct: 495 --TTAQRQKSGGVWKWVAG 511

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137701|ref|XP_003570438.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Brachypodium distachyon]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/503 (52%), Positives = 354/503 (70%), Gaps = 13/503 (2%)

Query: 11  PYDLWVTL-PVSGA-RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
           PYD WV L P  G+ RP  RYKHAA V   KLY+VGGSRNGR LSDVQVFD R+  WS  
Sbjct: 18  PYDSWVLLRPADGSSRPPARYKHAAEVIQDKLYVVGGSRNGRSLSDVQVFDFRTFKWSVS 77

Query: 69  RLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI-VRFIDLETN 127
               + +    E++   +  P ++ H +VKW   L+++ G+ + SS + + V  ID+ETN
Sbjct: 78  SPSRDSNQLNLENNAGNQPFPALAGHSLVKWKNNLVVVAGNSRASSSNKVSVWLIDVETN 137

Query: 128 LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ 187
               ++T GKVPV R G SV+L+GS+LI+FGGED  R+LL+D+H LDLETM W+ ++  +
Sbjct: 138 SWSAVDTYGKVPVARSGQSVSLIGSQLIMFGGEDNKRRLLSDLHILDLETMIWEEIKTEK 197

Query: 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 247
             PAPRYDHSAA++A+ YL++FGG SHS  F+D+++LDLQT EWSQP+ +G  +T R+GH
Sbjct: 198 GGPAPRYDHSAAVYADHYLLIFGGSSHSTCFSDMYLLDLQTLEWSQPDTQGANITPRSGH 257

Query: 248 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG 307
           AG  IDENWYIVGGGDN +G  +TIV+N +K  WS++TSV  R+ LA EGL++CS  I+G
Sbjct: 258 AGTMIDENWYIVGGGDNASGSTDTIVMNASKFVWSVVTSVSIRDSLACEGLTLCSTTIDG 317

Query: 308 EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA-----KS 362
           E  L+AFGGYNGKYNNEVFVM+ KPR+  +P++ QSPAAAAAAASVTAAYA+      K+
Sbjct: 318 EKFLIAFGGYNGKYNNEVFVMKPKPRNFVQPRLLQSPAAAAAAASVTAAYAVVTATDEKT 377

Query: 363 EKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEV 422
             +     L  K A  G+  S K    +IDA+  +K  LE  L EVR ENS+ ++K+D V
Sbjct: 378 RDIVAADDLDVKRAEPGS--SSKQTVAEIDALNWEKGKLESQLAEVRAENSKLKDKLDTV 435

Query: 423 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 482
             ++SEL+KEL SV+ QL AE SRC KLE+QIA   K L+S+ ++ENE+++L+QQ S  E
Sbjct: 436 KLSYSELTKELRSVENQLAAEGSRCQKLESQIAATNKRLQSADSLENELEVLQQQISQVE 495

Query: 483 QEMERATSVQTQGSGGVWRWIAG 505
           Q M   T+ Q + SGGVW+W+AG
Sbjct: 496 QTM---TTAQRRKSGGVWKWVAG 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2184352	514	AT5G04420 [Arabidopsis thalian	0.982	0.968	0.646	3.5e-178
TAIR|locus:2143676	648	ACBP5 "acyl-CoA binding protei	0.927	0.725	0.434	1.4e-105
TAIR|locus:2183008	708	AT5G18590 [Arabidopsis thalian	0.601	0.430	0.368	6.1e-62
DICTYBASE|DDB_G0280765	777	DDB_G0280765 "Kelch repeat-con	0.475	0.310	0.309	2.2e-28
MGI|MGI:2139530	380	Rabepk "Rab9 effector protein	0.504	0.673	0.285	8.6e-25
RGD|1310612	372	Rabepk "Rab9 effector protein	0.504	0.688	0.289	1.1e-24
UNIPROTKB|F1SKQ3	370	RABEPK "Uncharacterized protei	0.504	0.691	0.282	5.2e-24
DICTYBASE|DDB_G0268860	943	rngB "Kelch repeat-containing	0.465	0.250	0.306	1.1e-22
UNIPROTKB|Q5EA50	372	RABEPK "Rab9 effector protein	0.508	0.693	0.273	2.1e-22
UNIPROTKB|Q7Z6M1	372	RABEPK "Rab9 effector protein	0.453	0.618	0.288	5.7e-20

TAIR|locus:2184352 AT5G04420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
 Identities = 326/504 (64%), Positives = 397/504 (78%)

Query:     1 MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
             +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct:     8 IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query:    61 RSLAWSNLRLETELD-ADKT-EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
             RSL WS+L+L+TE   AD   ED G  L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct:    68 RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query:   117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
             M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct:   128 MLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query:   177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
             TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct:   188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query:   237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
             +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct:   248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query:   297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXXXXXXXX 356
             GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SP            
Sbjct:   308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query:   357 XXXXKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
                 KS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct:   368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query:   417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
             EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct:   428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query:   477 QKSAFEQEMERATSVQTQGSGGVW 500
             Q+SA ++E E  T VQ QGS GVW
Sbjct:   488 QRSASDEE-EDGT-VQRQGSAGVW 509

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2143676 ACBP5 "acyl-CoA binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 213/490 (43%), Positives = 306/490 (62%)

Query:    12 YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 71
             Y+ W     SG  P  RY+H AAV   K+Y+ GG+ NGR+L D+ V DL++  WS  R+E
Sbjct:   169 YNQWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWS--RVE 226

Query:    72 TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131
             T++     E S   + L   + H ++ W  +LL +GGH K  S+SM V   DL      +
Sbjct:   227 TKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSI 285

Query:   132 METSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 191
             ++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H LDL+TMTW+ ++   +PP 
Sbjct:   286 LKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPT 345

Query:   192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
             PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS+   +GD  T RAGHAG+T
Sbjct:   346 PRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVT 405

Query:   252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
             I ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   PLASEGLS+  +   GE  +
Sbjct:   406 IGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIV 465

Query:   312 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXXXXXXXXXXXXKSEKLDIPKTL 371
             VAFGGYNG YNNEV V++   +   + KI  +                      DI   +
Sbjct:   466 VAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSAVNNATTR------DIESEI 519

Query:   372 SSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 431
               K  G  + +        I  +K +K  +E SL + + +  + +E++ E+++ ++EL K
Sbjct:   520 --KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYK 569

Query:   432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS-AFEQEMERATS 490
             EL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E+++L++Q++ A EQ       
Sbjct:   570 ELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQRAVASEQAATMNAK 629

Query:   491 VQTQGSGGVW 500
              Q+ G    W
Sbjct:   630 RQSSGGVWGW 639

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006869 "lipid transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009416 "response to light stimulus" evidence=TAS

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2183008 AT5G18590 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 115/312 (36%), Positives = 170/312 (54%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETEL 74
             W+ L V+G +P+PR+ HAAA    K+ +VGG      L DVQV +  S  WS    +  L
Sbjct:    66 WMVLSVNGEKPAPRFNHAAATIGNKMIVVGGESGSGLLDDVQVLNFDSCTWSTASSKVYL 125

Query:    75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET 134
                    S L  ++P    HC+V WG K+L++GG    SSD + V   D ++    +M+ 
Sbjct:   126 SP-----SSLPLMIPAWKGHCLVSWGKKVLLVGGKTDPSSDRVSVWAFDTDSECWSLMDA 180

Query:   135 SGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 194
              G +PV+R GH+V    S LI+FGGED  ++ LND+H  DL++ TW  +  T T P  R 
Sbjct:   181 KGDLPVSRSGHTVVRASSVLILFGGEDSKKRKLNDLHMFDLKSSTWLPLNCTGTRPCARS 240

Query:   195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 254
              H A L  ++ L VFGG   +   NDL+ LD +T  WS+ +I+G   + RAG  G+    
Sbjct:   241 HHVATLFDDKILFVFGGSGKNKTLNDLYSLDFETMVWSRIKIRGFHPSPRAGSCGVLCGT 300

Query:   255 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS-EGLSVCSAIIEGEHHLVA 313
              WYI GGG       ET+V ++ K+ WS+  S+  ++ + S +G S+     + +  LVA
Sbjct:   301 KWYITGGGSRKKRHAETLVFDILKVEWSV-ASISSQSSVTSNKGFSLVLLQHKDKDFLVA 359

Query:   314 FGGYNGKYNNEV 325
             FGG     +N+V
Sbjct:   360 FGGTKKDPSNQV 371

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

DICTYBASE|DDB_G0280765 DDB_G0280765 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 319 (117.4 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
 Identities = 82/265 (30%), Positives = 129/265 (48%)

Query:    14 LWVTLPVSGARPSPRYKHAAAVFD-------QKLYIVGGSRNGRFLSDVQVFDLRSLAWS 66
             +W  +      PS RY H A + +       Q++ I GG    ++L+D+   +LR+++WS
Sbjct:    69 VWSEVNTVDKGPSGRYGHTATLLEDINDPNNQRVMIFGGKSGKKYLNDLFSLNLRTMSWS 128

Query:    67 NLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG-HYKKSSDSMIVRFIDLE 125
                 E     D         V PP++    +    ++++ GG H  K  +S  +  +DL 
Sbjct:   129 TFHFEKSTLPDSRAGHTSTYV-PPIN----INGSLRMVVFGGSHSDKYLNSCFI--LDLP 181

Query:   126 TNLCGVM-----ETSGKVPVTRGGHSVTLVGSR--LIIFGGEDRSRKLLNDVHFLDLETM 178
              +  G +     +  GK P  R GH+   +  R  ++IFGG D  RK  ND+H L++  M
Sbjct:   182 KSQAGTIKWIKPQIKGKAPSQRSGHTADYLKDRNSILIFGGFD-GRKSFNDLHLLNMTDM 240

Query:   179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQPEIK 237
             +W AV+   T P  R  H++ L   RYL+ +GGCS S   ND+ +LD  +  W SQP I 
Sbjct:   241 SWTAVKTNGTTPTTRNGHTSVLVGGRYLVFYGGCSESNVSNDIQILDTDSFTWLSQPMIT 300

Query:   238 GDLVTGRAGHAGITIDENWYIVGGG 262
             G ++  R  H+   +D    IV GG
Sbjct:   301 GLILFPRFNHSSNLLDSGEMIVFGG 325

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:2139530 Rabepk "Rab9 effector protein with kelch motifs" [Mus musculus (taxid:10090)]

 Score = 287 (106.1 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 80/280 (28%), Positives = 123/280 (43%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL   G RP PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct:    26 WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDT 85

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
                E  L   + E +  L   P  S H +  W     + GG   +S +   ++ +  E  
Sbjct:    86 ATREGLLP--RYEHASFL---PSCSPHSI--W-----VFGGA-DQSGNRNCLQVMSPEDR 132

Query:   128 LCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                  E +G  P  R  H S   +G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   133 TWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPE 192

Query:   185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
                +PP+PR+ H   + A   L + GG +   FF+DLH +D+    W +    G +  G 
Sbjct:   193 THGSPPSPRHGH-VMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGC 251

Query:   245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             A HA + +  + Y+ GG             +  K  W++L
Sbjct:   252 AAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVL 291

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1310612 Rabepk "Rab9 effector protein with kelch motifs" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 81/280 (28%), Positives = 123/280 (43%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL   G +P PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct:    18 WYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDT 77

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
                E  L   + E +  L   P  S H +  W     + GG   +S +   ++ ++ E  
Sbjct:    78 ATREGLLP--RYEHASFL---PSCSPHSI--W-----VFGGA-DQSGNRNCLQVMNPEAR 124

Query:   128 LCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                  E +G  P  R  H S   +G+ L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   125 TWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPE 184

Query:   185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
                +PP+PR+ H A + A   L + GG +   FF+DLH +D+    W +    G    G 
Sbjct:   185 THGSPPSPRHGH-AMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGC 243

Query:   245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             A HA + +  + Y+ GG             +  K  W+IL
Sbjct:   244 AAHAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTIL 283

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|F1SKQ3 RABEPK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 280 (103.6 bits), Expect = 5.2e-24, P = 5.2e-24
 Identities = 79/280 (28%), Positives = 130/280 (46%)

Query:    15 WVTLPVSGARPSPRYKHAAA----VFDQK---LYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL  +G  P  R  H+ +    V D K   ++IVGG+   R  SDV   DL +  W  
Sbjct:    18 WYTLTPTGDSPCARVGHSCSYLPPVGDSKRGKVFIVGGANPNRSFSDVHTMDLGTHQWDL 77

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
                E  L   + E +  +   P  + H +  W     + GG   +S +   ++ ++ ET 
Sbjct:    78 TTSEGLLP--RYEHASFV---PSCAPHSI--W-----VFGGA-DQSGNRNCLQVLNPETR 124

Query:   128 LCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                + E +   P  R  H S +++G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   125 TWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERGAQPVQDVKLHVFDANTLTWSQPE 184

Query:   185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
                 PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   TG 
Sbjct:   185 TLGEPPSPRHGH-VMVAAGTKLFIHGGLAGDKFYDDLHCIDINDMKWQKLSPTGAAPTGC 243

Query:   245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             A H+ +T+ ++ YI GG             ++ K  W++L
Sbjct:   244 AAHSAVTVGKHVYIFGGMTPTGALDTMYQYHIEKQHWTLL 283

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 287 (106.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 83/271 (30%), Positives = 120/271 (44%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQK---------LYIVGGSRNGRFLSDVQVFDL---RS 62
             W  +   G  PS RY H+A ++  +         +   GG    +  SD+ +  +   RS
Sbjct:    55 WSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRS 114

Query:    63 LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRF 121
               W  +  ++               +   + H  V +   L++ GGH   KS     V  
Sbjct:   115 FIWKQVTTKS---------------IEGRAGHTAVVYRQNLVVFGGHNNHKSKYYNSVLL 159

Query:   122 IDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTW 180
               LE+N        G +P  R  HS   V + ++ IFGG D  +K  ND+++LDLET  W
Sbjct:   160 FSLESNEWRQQVCGGVIPSARATHSTFQVNNNKMFIFGGYD-GKKYYNDIYYLDLETWIW 218

Query:   181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ-TNE--WSQPEI 236
               VE   TPP PR  HSA +  N  L++FGGC S S F ND+H+L ++  NE  W QP  
Sbjct:   219 KKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGSDSNFLNDIHILHIEGANEYRWEQPSY 278

Query:   237 KG-DLVTGRAGHAGITIDENWYIVGGGDNNN 266
              G ++   R  H    I    YI  G  + N
Sbjct:   279 LGLEIPQARFRHTTNFIGGRVYIYAGTGSGN 309

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5EA50 RABEPK "Rab9 effector protein with kelch motifs" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 77/282 (27%), Positives = 127/282 (45%)

Query:    13 DLWVTLPVSGARPSPRYKHAAA----VFDQ---KLYIVGGSRNGRFLSDVQVFDLRSLAW 65
             + W TL + G  P  R  H+ +    V D    K++IVGG+   R  SDV   DL +  W
Sbjct:    16 ETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTHQW 75

Query:    66 SNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 125
                  E  L   + E +  +   P  + H +  W     + GG   +S +   ++ ++ +
Sbjct:    76 DLATSEGLLP--RYEHTSFI---PSCTPHSI--W-----VFGGA-DQSGNRNCLQVLNPD 122

Query:   126 TNLCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDA 182
             T      E +G  P  R  H S   +G +L +FGG +R  + + DV  H  D  T+TW  
Sbjct:   123 TRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQ 182

Query:   183 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 242
              E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   T
Sbjct:   183 PETHGKPPSPRHGH-VMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPT 241

Query:   243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             G A H+ + + ++ Y+ GG             ++ K  W++L
Sbjct:   242 GCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLL 283

GO:0010008 "endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q7Z6M1 RABEPK "Rab9 effector protein with kelch motifs" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 75/260 (28%), Positives = 118/260 (45%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL V G  P  R  H+ +           K++IVGG+   R  SDV   DL    W  
Sbjct:    18 WYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKHQW-- 75

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHC-MVKWGT--KLLILGGHYKKSSDSMIVRFIDL 124
                  +LD  K    GLL    P  +H   +   T  ++ + GG   +S +   ++ ++ 
Sbjct:    76 -----DLDTCK----GLL----PRYEHASFIPSCTPDRIWVFGGA-NQSGNRNCLQVLNP 121

Query:   125 ETNLCGVMETSGKVPVTRGGH-SVTLVGSRLIIFGGEDRSRKLLND--VHFLDLETMTWD 181
             ET      E +   P  R  H S   +G++L +FGG +R  + + D  +H  D  T+TW 
Sbjct:   122 ETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWS 181

Query:   182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV 241
               E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   
Sbjct:   182 QPETLGNPPSPRHGH-VMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAP 240

Query:   242 TGRAGHAGITIDENWYIVGG 261
              G A H+ + + ++ YI GG
Sbjct:   241 AGCAAHSAVAMGKHVYIFGG 260

GO:0010008 "endosome membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=TAS

GO:0006904 "vesicle docking involved in exocytosis" evidence=TAS

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018098001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (508 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	2e-09
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	4e-09
pfam01344	46	pfam01344, Kelch_1, Kelch motif	7e-09
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	1e-08
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	3e-08
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	4e-07
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	6e-07
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	6e-07
pfam13854	42	pfam13854, Kelch_5, Kelch motif	1e-06
pfam13964	50	pfam13964, Kelch_6, Kelch motif	2e-06
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	5e-06
pfam07646	48	pfam07646, Kelch_2, Kelch motif	9e-06
pfam01344	46	pfam01344, Kelch_1, Kelch motif	1e-05
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	1e-05
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-05
pfam13854	42	pfam13854, Kelch_5, Kelch motif	1e-05
pfam07646	48	pfam07646, Kelch_2, Kelch motif	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	5e-05
pfam14073	178	pfam14073, Cep57_CLD, Centrosome localisation doma	9e-05
pfam13854	42	pfam13854, Kelch_5, Kelch motif	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	4e-04
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	5e-04
pfam07646	48	pfam07646, Kelch_2, Kelch motif	5e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	8e-04
pfam13964	50	pfam13964, Kelch_6, Kelch motif	9e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	0.001
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.002
COG3055	381	COG3055, COG3055, Uncharacterized protein conserve	0.002
smart00612	47	smart00612, Kelch, Kelch domain	0.002
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	0.003
pfam13964	50	pfam13964, Kelch_6, Kelch motif	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
smart00612	47	smart00612, Kelch, Kelch domain	0.004
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	0.004

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 142 RGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192
           R  H+ T +G  RL +FGGE+    +L+DV   DL T TW     T+ P  P
Sbjct: 2   RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTW-----TRLPSLP 48

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 201
           G ++ +FGG       LND+   DL+T TW   E     P PR  H+A + 
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 27 PRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
          PR      V   K+Y++GG   G+ LS V+V+D  +  WS L
Sbjct: 1  PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 192 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQ 233
           PR  H++    +  L +FGG +      +D+ V DL TN W++
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTR 43

Length = 49

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 131 VMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLN-DVHFLDLETMTWDAVEVTQTP 189
           V +  GK P  R  H + +VG +L  FGGE +  + ++ D++  D  T TW         
Sbjct: 12  VEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV 71

Query: 190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG---RAG 246
           P         +     L +FGG      F+D +  D   NEW+    K D   G   R  
Sbjct: 72  PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTF-LTKLDEEGGPEARTF 130

Query: 247 HAGITIDENWYIVGGGDNNNGCQET 271
           H+ +  DEN   V GG +  G  +T
Sbjct: 131 HS-MASDENHVYVFGGVSKGGLMKT 154

Length = 341

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 132 METSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLND-VHFLDLETMTWDAVEVTQTPP 190
           +E  G+ P  R  H +  VG+++  FGGE    + ++  ++  DLET TW     T   P
Sbjct: 156 VEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP 215

Query: 191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHA 248
                    +     L VFGG   S  +N  +  D  TNEW    P  +G   T R+ H+
Sbjct: 216 HLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP--TPRSFHS 273

Query: 249 GITIDENWYIVGG 261
               +EN Y+ GG
Sbjct: 274 MAADEENVYVFGG 286

Length = 470

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 203 NRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252
              + VFGG        NDL V DL TN W +    GDL   RAGHA   I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 51/267 (19%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 28  RYKHAAAVFDQKLYIVGGS-RNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE 86
            Y   + V +  +Y +GG  +N   ++ V  +D ++ +W+ +    EL   +        
Sbjct: 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKV---PELIYPRKNPGV--- 338

Query: 87  VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHS 146
                       +  ++ ++GG Y   S +  V       +          +   R    
Sbjct: 339 ----------TVFNNRIYVIGGIYNSISLN-TVESWKPGES---KWREEPPLIFPRYNPC 384

Query: 147 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYL 206
           V  V + + + GG  ++ +LL  V    L T  W         P   Y   A  H    +
Sbjct: 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDG-KI 440

Query: 207 IVFGGCSHS---IFFNDLHVLDLQTNEWS------QPEIKGDLVTGRAGHAGITIDENWY 257
            V GG S+      +N +   +  TN+W+       P I           A + I  N  
Sbjct: 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN----------ASLCIFNNKI 490

Query: 258 IVGGGDNNNGCQETI-VLNMTKLAWSI 283
            V GGD        I V +     W++
Sbjct: 491 YVVGGDKYEYYINEIEVYDDKTNTWTL 517

Length = 534

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 25 PSPRYKHAAAVFDQKLYIVGG--SRNGRFLSDVQVFDLRS 62
          P PR  H A V   ++Y+ GG  S NG+   DV V  L  
Sbjct: 2  PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 144 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 193
           GHS   VG ++ +FGG     K  N V   D ET +W+ +      P PR
Sbjct: 4   GHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLP---PLPTPR 50

Length = 50

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 21/104 (20%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464
           L E++ E +  +E++ E+    +EL +E   ++ +L    +   +L+ ++A ++++  ++
Sbjct: 68  LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127

Query: 465 QTIENEVQILRQQKSAFEQEMERATSVQTQGSGGV-WRW-IAGG 506
             ++ E + LR++ +  +QE E   +   +       RW + GG
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQRRWFLYGG 171

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 27 PRYKHAAAVFDQKLYIVGGSR--NGRFLSDVQVFDLRSLAWSNL 68
          PRY HA+ V   KLY+VGGS        SD+ V D  +  W+ L
Sbjct: 1  PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTEL 44

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 233
           PR      +     + V GG       + + V D +TN WS+
Sbjct: 1   PRSGAGVVVL-GGKIYVIGGYDGGQSLSSVEVYDPETNTWSK 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 71/320 (22%), Positives = 113/320 (35%), Gaps = 39/320 (12%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQKLYIVGG--SRNGRFLSDVQVFDLRSLAWSNLRLET 72
           W+ +   G  P  R  H  A    K+Y  GG  + N      + VFDL +  WS      
Sbjct: 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS------ 206

Query: 73  ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 132
              +  T D   L  L       MV  G+ L + GG       +    F D  TN   ++
Sbjct: 207 --ISPATGDVPHLSCL----GVRMVSIGSTLYVFGGRDASRQYNGFYSF-DTTTNEWKLL 259

Query: 133 ETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192
               + P  R  HS+      + +FGG   +   L  +   ++    W          + 
Sbjct: 260 TPVEEGPTPRSFHSMAADEENVYVFGGVS-ATARLKTLDSYNIVDKKWFHCSTPGDSFSI 318

Query: 193 RYDHSAALHANRYLIVFG--GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 250
           R      +   +  +V+G  GC      +D+H  D   ++W+Q E  G   + R+  A  
Sbjct: 319 RGGAGLEVVQGKVWVVYGFNGCE----VDDVHYYDPVQDKWTQVETFGVRPSERSVFASA 374

Query: 251 TIDENWYIVGG------------GDNNNGCQETIVLNMTKLAWSILTSVKGR--NPLASE 296
            + ++  I GG            G   +G   T  L+   L W  L         P +  
Sbjct: 375 AVGKHIVIFGGEIAMDPLAHVGPGQLTDG---TFALDTETLQWERLDKFGEEEETPSSRG 431

Query: 297 GLSVCSAIIEGEHHLVAFGG 316
             +  +  I+G+  LV  GG
Sbjct: 432 WTASTTGTIDGKKGLVMHGG 451

Length = 470

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 37/215 (17%)

Query: 26  SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85
            PR      VF+ ++Y++GG  N   L+ V+ +      W   R E  L           
Sbjct: 331 YPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW---REEPPL----------- 376

Query: 86  EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVTR 142
             + P  + C+V     + ++GG  K       V    L TN       +      P++ 
Sbjct: 377 --IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL------PISH 428

Query: 143 GGHSVTLVGSRLIIFGG---EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA--PRYDHS 197
            G        ++ + GG    D   K+ N V   +  T  W     T+      PR + S
Sbjct: 429 YGGCAIYHDGKIYVIGGISYIDNI-KVYNIVESYNPVTNKW-----TELSSLNFPRINAS 482

Query: 198 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 232
             +  N  + V GG  +  + N++ V D +TN W+
Sbjct: 483 LCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516

Length = 534

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 189 PPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTN 229
            P PR +H A +     + ++GG +       +D++VL L   
Sbjct: 1   LPVPRANHCAVVVGG-EIYLYGGYTSGNGQSSDDVYVLSLPGF 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 141 TRGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTP 189
            R  H+  +VG +L + GG         +D+  LD ET  W   E+   P
Sbjct: 1   PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWT--ELPALP 48

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 20/102 (19%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           +++  ++++++E    L+  + E+  +    +E+++E+     E  + L +++ +L +  
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 445 SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486
            R  +LE +I EL+   E  + +E ++  L ++    E+E+E
Sbjct: 821 QRRERLEQEIEELE---EEIEELEEKLDELEEELEELEKELE 859

Length = 1163

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 50/234 (21%), Positives = 83/234 (35%), Gaps = 44/234 (18%)

Query: 32  AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM 91
           +A   D KLY+ GG+ NG+  +    F+L +  W  L           +  G   V P  
Sbjct: 118 SATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEEL----------PDFPGAPRVQP-- 165

Query: 92  SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME--TSGKVPVT-RGGHSVT 148
                VK   +L + GG    +           +T     +    S   P++  G  S+ 
Sbjct: 166 ---VCVKLQNELYVFGGGDNIAYTD--GYKYSPKTGTWEKVADPLSDGEPISLLGAASIA 220

Query: 149 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 208
           +  S L+  GG +    + ND   + L TM                D S   +A  Y   
Sbjct: 221 INESLLLCIGGFN--YDVFNDA-VIRLATMK---------------DESLKSYAAEY--- 259

Query: 209 FGGCSHSIFFND-LHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG 261
           F        +ND + + D+++ +W    I       R G A +    N +++ G
Sbjct: 260 FLHPPDWYRWNDKVLIYDVRSGKWK--SIGNSPFVARCGAALLLTGNNLFVING 311

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 382 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 441
           L EK  R +++  + +  +  LS  E         E+  E N   +EL+K+   +  QL 
Sbjct: 9   LQEKIRRLELERTQAEDNLQTLS-REATHYKKVLEEEEQERNLAANELTKQNKDLTSQLS 67

Query: 442 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 495
           +  SRC  LE Q+  +++M+E+++       +L QQ S   ++      VQ Q 
Sbjct: 68  SAESRCSLLEKQLEYMRRMVENAEK--ERTAVLEQQVSLQREKEHDQMDVQAQL 119

The CLD or centrosome localisation domain of Cep57 is found at the N-terminus, and lies approximately between residues 58 and 239. This region lies within the first alpha-helical coiled-coil segment of Cep57, and localises to the centrosome internally to gamma-tubulin, suggesting that it is either on both centrioles or on a centromatrix component. This N-terminal region can also multimerise with the N-terminus of other Cep57 molecules. The C-terminal part, Family Cep57_MT_bd, pfam06657, is the microtubule-binding region of Cep57. Length = 178

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 138 VPVTRGGHSVTLVGSRLIIFGGED-RSRKLLNDVHFLDLET 177
           +PV R  H   +VG  + ++GG    + +  +DV+ L L  
Sbjct: 1   LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 442
           +   ++ +I+ ++E ++ L+  L E+  E      ++D +      L +    ++ ++  
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832

Query: 443 ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 488
                 +LE ++ EL++ LE    +E E++ L+++    E E E  
Sbjct: 833 LEEEIEELEEKLDELEEELEE---LEKELEELKEELEELEAEKEEL 875

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 442
             K+   +++ +  + + LE  L E+R E S   E+I+E+      L+ E+S ++ Q   
Sbjct: 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306

Query: 443 ERSR-------CFKLEAQIAELQKML----ESSQTIENEVQILRQQKSAFEQEMERATSV 491
            R R         +LEAQ+ EL+  L    E    +E +++ L+++  + E E+E   + 
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 492 Q 492
            
Sbjct: 367 L 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 52/232 (22%), Positives = 77/232 (33%), Gaps = 57/232 (24%)

Query: 142 RGGHSVTLVGSRLIIFGG-----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 196
           R       +  +L +FGG      + S ++ +DV+  D +  +W  ++     P      
Sbjct: 54  RNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLLGA 111

Query: 197 SAALHANRYLIVFGGCSHSIF---FNDL-----------------------------HVL 224
           S     N      GG + +IF   F DL                             +VL
Sbjct: 112 SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171

Query: 225 --DLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ--ETIVLNMT--K 278
             D  TN+W        L  G AG + I    N  ++  G+   G +  E      T  K
Sbjct: 172 SYDPSTNQWRNLGENPFL--GTAG-SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228

Query: 279 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY---------NGKY 321
           L W+ L  +      + EGL+   A I     LVA G           NGK 
Sbjct: 229 LEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKL 280

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 27/206 (13%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNG-------RFLSDVQVFDLRSLAWSNLRLETELDAD 77
           P  R  H+ A  +  +Y+ GG   G       RF + ++ +++    W  L    E + +
Sbjct: 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT-IEAYNIADGKWVQLPDPGE-NFE 182

Query: 78  KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK 137
           K   +G   V         V +G    IL G  K   +S  V+F D  +     +ET+G 
Sbjct: 183 KRGGAGFAVV----QGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKWTEVETTGA 237

Query: 138 VPVTRGGHSVTLVGSRLIIFGGE---DRSR-----KLLNDVHFLDLETMTWDAVEVTQTP 189
            P  R   +  +VG  +IIFGGE   D         L N+ + LD ET+ W+ +     P
Sbjct: 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEP 297

Query: 190 PAPR----YDHSAALHANRYLIVFGG 211
             PR    Y  +A ++    L++ GG
Sbjct: 298 AMPRGWTAYT-TATVYGKNGLLMHGG 322

Length = 341

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 192 PRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS 232
           PRY H++ +   + L V GG +    +  +DL VLD +TN W+
Sbjct: 1   PRYPHASVVVGGK-LYVVGGSTGLGDLSSSDLWVLDPETNVWT 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 367 IPKTLS---SKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 423
           I K L    ++   +   L   ++   ++ ++     LE  + E+R    R  EK+  V 
Sbjct: 29  IRKALKKAKAELEALNKALEALEIE--LEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86

Query: 424 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT--------IENEVQILR 475
                  +EL ++  ++   + R   LE ++AEL + +E  +         +E   + L 
Sbjct: 87  D-----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141

Query: 476 QQKSAFEQEME 486
           + ++  E+E+ 
Sbjct: 142 EAEARLEEEVA 152

Length = 239

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 384 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 443
            +++R +++ ++E+   L+  + E+  E S  RE+++E+ +   EL + L  ++ ++ A 
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335

Query: 444 RSRCFKLEAQIAEL-QKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 494
           +    + E  + EL Q + E  +  E   + L       E+  E       +
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Length = 1163

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 77/341 (22%), Positives = 122/341 (35%), Gaps = 66/341 (19%)

Query: 15  WVTLPVSGAR-PSPRYKHAAAVFDQKLYIVGG--SRNGRFLSDVQVFDLRSLAWSNLRLE 71
           W+ +   G + P PR  H  AV   KLY  GG    N     D+ VFD  +  WS     
Sbjct: 9   WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS----- 63

Query: 72  TELDADKTEDSGLLEVLPPMSD----HC----MVKWGTKLLILGGHYKKSSDSMIVRFID 123
                          + P   D     C    MV  GTKL I GG  +K   S    +  
Sbjct: 64  ---------------IAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDT 108

Query: 124 LE---TNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
           ++   T L  + E  G  P  R  HS+    + + +FGG  +   +     F  +E    
Sbjct: 109 VKNEWTFLTKLDEEGG--PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166

Query: 181 DAVEVTQTP-PAPRYDHSA----ALHANRYLIVFGGCSHSI-------FFNDLHVLDLQT 228
              +  Q P P   ++       A+   +  +V+G  +  +         N +   D  +
Sbjct: 167 ADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPAS 226

Query: 229 NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG------------GDNNNGCQETIVLNM 276
            +W++ E  G   + R+  A   + +   I GG            G  +N   E   L+ 
Sbjct: 227 GKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSN---EGYALDT 283

Query: 277 TKLAWSILTSVKGRNPLASEG-LSVCSAIIEGEHHLVAFGG 316
             L W  L   +   P    G  +  +A + G++ L+  GG
Sbjct: 284 ETLVWEKLG--ECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322

Length = 341

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 192 PRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQ 233
           PR  HSA       + VFGG  + S   N + V D +T  W +
Sbjct: 1   PRTGHSAVSVGG-KIYVFGGYSNGSKASNKVLVYDPETGSWEK 42

Length = 50

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 142 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
           R G  V ++G ++ + GG D  +  L+ V   D ET TW
Sbjct: 2   RSGAGVVVLGGKIYVIGGYDGGQ-SLSSVEVYDPETNTW 39

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 20/147 (13%)

Query: 356 AYALAKSEKLDIPKTLSSK---FAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 412
           A   AK+E   + K L +       +  +     + ++I  I+E  +  E  L+ V+ E 
Sbjct: 32  ALKKAKAELEALNKALEALEIELEDL--ENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89

Query: 413 SR---------FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463
                       +E+I+ +    +EL +E+  ++ ++   + R  +LE  +AE +     
Sbjct: 90  ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE----- 144

Query: 464 SQTIENEVQILRQQKSAFEQEMERATS 490
              +E EV  +R++      + E    
Sbjct: 145 -ARLEEEVAEIREEGQELSSKREELKE 170

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 24/150 (16%)

Query: 364 KLDIPKTLSSKFAGIGNDLSEKDVRTD--IDAIKEDKRVLELSLTEV----------RTE 411
           + +I K L+     +  ++ E+  R D   +   E K  LE    E+          R E
Sbjct: 328 EAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL-------EAQIAELQKMLESS 464
              +REK++++    +EL +EL  +Q +L         L       EA+I EL++  E  
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 465 Q----TIENEVQILRQQKSAFEQEMERATS 490
                  E +++ L    S +EQE+     
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/97 (25%), Positives = 49/97 (50%)

Query: 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 447
            ++++A+  ++  LE +L  +R+E     E++ E+ S  SEL +EL  ++ +L     R 
Sbjct: 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

Query: 448 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 484
             LE +I  LQ+ L    ++  E     + K   ++E
Sbjct: 932 EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC------SHSIFFNDL 221
              + LDL+  +    ++   P  PR    AA      L VFGG            F+D+
Sbjct: 29  TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG-KLYVFGGIGKANSEGSPQVFDDV 87

Query: 222 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 266
           +  D + N W +  +      G  G +G ++        GG N N
Sbjct: 88  YRYDPKKNSWQK--LDTRSPVGLLGASGFSLHNGQAYFTGGVNKN 130

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 19/118 (16%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 377 GIGNDLSEKD----VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432
           GI    SE      +R  ++ +K +   L+  L  +        +++ + +    E+ KE
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724

Query: 433 LSSVQGQLVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSAFEQEME 486
           +  ++ +    + R  +LE  ++ L++ +E      + +E  ++ L +     E+ + 
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------IFFNDLHVLDL 226
           LDL   +    ++   P  PR + + A   +  L VFGG   +        F+D++  D 
Sbjct: 55  LDLNAPSKGWTKIAAFPGGPR-EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113

Query: 227 QTNEWSQPEIKGDLVT----GRAGHAGITIDENW-YIVGG 261
           +TN W +      L T    G AGH  +++     YI GG
Sbjct: 114 KTNSWQK------LDTRSPVGLAGHVAVSLHNGKAYITGG 147

Length = 376

>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 51/232 (21%), Positives = 73/232 (31%), Gaps = 70/232 (30%)

Query: 142 RGGHSVTLVGSRLIIFGG----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR--YD 195
           R      ++G +L +FGG       S ++ ND +  D  T +W  ++      +P     
Sbjct: 83  RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR----SPTGLVG 138

Query: 196 HSAALHANRYLIVFGGCSHSIF---FNDL---------------HVLDL----------- 226
            S        +  FGG + +IF   F D+               H  D            
Sbjct: 139 ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEV 198

Query: 227 -----QTNEWSQPEIKGDL-VTGRAGHAGITIDEN--WYIVG---GGDNNNGCQETIVLN 275
                 TN+W      G+    G AG A + I  N    I G    G      ++     
Sbjct: 199 LSYDPSTNQWR---NLGENPFYGNAGSA-VVIKGNKLTLINGEIKPGLRTAEVKQADFGG 254

Query: 276 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 327
              L W                LS   A I      VA G ++GK N EV V
Sbjct: 255 D-NLKWLK--------------LSDLPAPIGSNKEGVA-GAFSGKSNGEVLV 290

Length = 381

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 206 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 254
           + V GG         + V D +TN+W+       + T R+GH    I+ 
Sbjct: 2   IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVING 47

Length = 47

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 27 PRYKHAA-AVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWS 66
          PR  H + ++ D +LY+ GG + +G  LSDV VFDL +  W+
Sbjct: 1  PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWT 42

Length = 49

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 27 PRYKHAAAVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWS 66
          PR  H+A     K+Y+ GG S   +  + V V+D  + +W 
Sbjct: 1  PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWE 41

Length = 50

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 28/114 (24%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           K++R +++ ++E+   LE  L E++ E     ++I+E+ S   EL +EL  +Q +L+  +
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 445 SRCFKLEAQIAELQKMLESS----QTIENEVQILRQQKSAFEQEMERATSVQTQ 494
               +LE +I+ L++ LE      + +E  ++ L+++  A ++E+E   ++  +
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 22/116 (18%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 373 SKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432
           +K + +      K++  ++  ++     LE  L  ++ E     + ++E+     EL ++
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 433 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 488
           L  ++ +L A       LE ++ +LQ  LE    +E E++ L ++    ++ +E  
Sbjct: 718 LEELKRELAA-------LEEELEQLQSRLEE---LEEELEELEEELEELQERLEEL 763

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 371 LSSKFAGIGNDLSE-KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 429
           LSS    I N  SE K++   I+ ++ED   LE +L ++  E      +I E+ +  S+L
Sbjct: 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSKL 803

Query: 430 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486
            +E+S ++ +L        KL     E + + +  Q ++ +   L++Q  + E+E+E
Sbjct: 804 EEEVSRIEARLREIEQ---KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 369 KTLSSKFAGIGNDLSE-----KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 423
             L ++   +  +L       + +   ++ ++     LE  L E++ E +   E+++++ 
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 424 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQ 483
           S   EL +EL  ++ +L   + R  +LE ++  L++ L     ++ E++ L +++ A ++
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAK---LKEEIEELEEKRQALQE 793

Query: 484 EME 486
           E+E
Sbjct: 794 ELE 796

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 22/106 (20%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           +++   ++ +K +   LE  L ++++      E+++E+     EL + L  ++ +L +  
Sbjct: 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 445 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEME 486
               KL+ +I EL++  ++ Q     +E E++   ++  A E+E+E
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817

Length = 1163

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
          K+Y+VGG   G+ L  V+V+D  +  W+ L
Sbjct: 1  KIYVVGGFDGGQRLKSVEVYDPETNKWTPL 30

Length = 47

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 384 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL---SKELSSV-QGQ 439
           ++ +  +++ +KED ++L   L  + +   + R++ D +     +L     EL      +
Sbjct: 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTE 205

Query: 440 LVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSAFEQEMERATSV 491
           L   + +  KL  +I    K LE      Q +E++++ L  +KS    E+  A   
Sbjct: 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
PLN02193	470	nitrile-specifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PLN02193	470	nitrile-specifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.97
PHA02790	480	Kelch-like protein; Provisional	99.97
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.8
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.79
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.74
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.58
PF13964	50	Kelch_6: Kelch motif	99.21
PLN02772	398	guanylate kinase	99.18
PF13964	50	Kelch_6: Kelch motif	99.12
PLN02772	398	guanylate kinase	99.09
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.99
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.95
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.95
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.95
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.92
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.86
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.85
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.84
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.8
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.77
PF13854	42	Kelch_5: Kelch motif	98.77
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.76
PF13854	42	Kelch_5: Kelch motif	98.67
smart00612	47	Kelch Kelch domain.	98.44
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.37
smart00612	47	Kelch Kelch domain.	98.35
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.32
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.83
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.73
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.64
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.36
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.27
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.01
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.97
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.94
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.86
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.75
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.74
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.48
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.48
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.46
PRK04043	419	tolB translocation protein TolB; Provisional	96.46
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.39
KOG2055	514	consensus WD40 repeat protein [General function pr	96.31
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.29
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.12
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.07
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.07
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.98
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.93
PRK05137	435	tolB translocation protein TolB; Provisional	95.91
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.88
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.84
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	95.83
PRK04792	448	tolB translocation protein TolB; Provisional	95.83
PRK10361	475	DNA recombination protein RmuC; Provisional	95.82
PTZ00421	493	coronin; Provisional	95.8
PRK04922	433	tolB translocation protein TolB; Provisional	95.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.7
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.68
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.63
PRK11637	428	AmiB activator; Provisional	95.63
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.59
PRK04792	448	tolB translocation protein TolB; Provisional	95.56
KOG2055	514	consensus WD40 repeat protein [General function pr	95.42
COG4026	290	Uncharacterized protein containing TOPRIM domain,	95.41
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.32
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.25
COG2433	652	Uncharacterized conserved protein [Function unknow	95.24
PRK00178	430	tolB translocation protein TolB; Provisional	95.15
PRK05137	435	tolB translocation protein TolB; Provisional	95.13
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.03
PTZ00420	568	coronin; Provisional	95.02
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.99
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	94.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.94
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.93
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.93
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.9
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.87
PRK04922	433	tolB translocation protein TolB; Provisional	94.85
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.84
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.82
COG2433	652	Uncharacterized conserved protein [Function unknow	94.82
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.81
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	94.79
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	94.77
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.75
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.71
PRK11028	330	6-phosphogluconolactonase; Provisional	94.6
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	94.59
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.57
PRK09039	343	hypothetical protein; Validated	94.57
PRK09039	343	hypothetical protein; Validated	94.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.55
PRK00178	430	tolB translocation protein TolB; Provisional	94.48
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.41
PRK03629	429	tolB translocation protein TolB; Provisional	94.4
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.39
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	94.35
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.31
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.13
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.13
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	94.04
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.03
COG4946	668	Uncharacterized protein related to the periplasmic	93.93
KOG0646	476	consensus WD40 repeat protein [General function pr	93.88
PRK03629	429	tolB translocation protein TolB; Provisional	93.84
COG4372	499	Uncharacterized protein conserved in bacteria with	93.71
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.71
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.67
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.67
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.54
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.38
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.36
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.34
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.27
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	93.25
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.24
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.2
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.13
PRK02889	427	tolB translocation protein TolB; Provisional	93.0
PRK00409	782	recombination and DNA strand exchange inhibitor pr	92.9
COG1322	448	Predicted nuclease of restriction endonuclease-lik	92.88
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	92.88
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.85
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.85
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	92.83
PRK04043	419	tolB translocation protein TolB; Provisional	92.69
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	92.63
PRK13684	334	Ycf48-like protein; Provisional	92.6
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.6
PTZ00266	1021	NIMA-related protein kinase; Provisional	92.56
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	92.5
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	92.49
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	92.47
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	92.44
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.4
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.39
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	92.39
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	92.33
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.27
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.26
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	92.24
PRK13684	334	Ycf48-like protein; Provisional	92.19
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.16
KOG1003	205	consensus Actin filament-coating protein tropomyos	92.15
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	92.1
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.03
PF14662	193	CCDC155: Coiled-coil region of CCDC155	91.95
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.94
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.92
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.89
PRK11028	330	6-phosphogluconolactonase; Provisional	91.85
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.81
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.77
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.73
PRK02889	427	tolB translocation protein TolB; Provisional	91.68
KOG2321	703	consensus WD40 repeat protein [General function pr	91.68
KOG0249	916	consensus LAR-interacting protein and related prot	91.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.58
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	91.54
KOG1003	205	consensus Actin filament-coating protein tropomyos	91.51
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.51
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.44
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.4
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.36
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	91.32
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	91.31
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	91.29
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.27
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	91.26
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	91.17
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	91.11
PRK11546	143	zraP zinc resistance protein; Provisional	91.1
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.08
PRK01742	429	tolB translocation protein TolB; Provisional	90.99
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	90.94
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	90.87
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	90.86
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.86
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.75
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.66
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	90.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	90.52
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	90.48
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	90.45
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	90.44
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.25
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	90.19
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	90.13
PRK06231	205	F0F1 ATP synthase subunit B; Validated	90.13
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.08
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	90.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.99
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	89.96
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.76
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	89.72
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	89.71
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	89.7
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	89.56
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	89.52
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	89.49
PF15233	134	SYCE1: Synaptonemal complex central element protei	89.42
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	89.39
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	89.32
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	89.3
PRK01742	429	tolB translocation protein TolB; Provisional	89.15
KOG1937	521	consensus Uncharacterized conserved protein [Funct	89.11
PF13088	275	BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A	89.03
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.0
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.98
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	88.91
COG4946	668	Uncharacterized protein related to the periplasmic	88.87
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	88.86
PHA02562	562	46 endonuclease subunit; Provisional	88.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.85
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	88.81
KOG0649	325	consensus WD40 repeat protein [General function pr	88.8
CHL00019	184	atpF ATP synthase CF0 B subunit	88.62
KOG0646	476	consensus WD40 repeat protein [General function pr	88.5
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	88.49
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	88.46
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	88.45
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	88.42
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	88.25
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	88.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.17
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	88.16
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	88.12
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	88.11
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	88.1
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	88.1
PRK10780	165	periplasmic chaperone; Provisional	88.04
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	88.02
PRK07352	174	F0F1 ATP synthase subunit B; Validated	87.95
KOG1962	216	consensus B-cell receptor-associated protein and r	87.88
KOG1937	521	consensus Uncharacterized conserved protein [Funct	87.88
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	87.84
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	87.78
PF14282	106	FlxA: FlxA-like protein	87.72
KOG0933	1174	consensus Structural maintenance of chromosome pro	87.54
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	87.48
KOG3850	455	consensus Predicted membrane protein [Function unk	87.48
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	87.43
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.31
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	87.23
PRK03947	140	prefoldin subunit alpha; Reviewed	87.17
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	87.11
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	86.94
KOG0964	1200	consensus Structural maintenance of chromosome pro	86.89
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	86.84
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	86.65
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	86.47
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	86.46
KOG0964	1200	consensus Structural maintenance of chromosome pro	86.41
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	86.4
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	86.34
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	86.23
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.09
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	86.08
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	86.07
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	86.06
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	86.03
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	86.02
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	85.91
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	85.82
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	85.74
PF05615	139	THOC7: Tho complex subunit 7; InterPro: IPR008501	85.71
KOG4673	961	consensus Transcription factor TMF, TATA element m	85.64
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	85.45
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.45
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	85.36
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	85.34
PF12004	495	DUF3498: Domain of unknown function (DUF3498); Int	85.31
KOG0310	487	consensus Conserved WD40 repeat-containing protein	85.28
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	85.25
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	85.17
PRK05759	156	F0F1 ATP synthase subunit B; Validated	85.12
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	85.1
PRK08475	167	F0F1 ATP synthase subunit B; Validated	85.09
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	85.06
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.03
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	85.01
PF15556	252	Zwint: ZW10 interactor	84.88
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	84.88
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	84.87
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	84.78
KOG2010	405	consensus Double stranded RNA binding protein [Gen	84.71
PLN00181	793	protein SPA1-RELATED; Provisional	84.7
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	84.68
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	84.57
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	84.55
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.45
PRK11519	719	tyrosine kinase; Provisional	84.43
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.39
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	84.31
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	84.26
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	84.21
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	84.18
KOG1962	216	consensus B-cell receptor-associated protein and r	84.06
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	83.97
KOG3647	338	consensus Predicted coiled-coil protein [General f	83.93
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	83.9
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	83.77
PF07851	330	TMPIT: TMPIT-like protein; InterPro: IPR012926 A n	83.68
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	83.65
PRK10698	222	phage shock protein PspA; Provisional	83.65
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	83.5
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	83.44
KOG0288	459	consensus WD40 repeat protein TipD [General functi	83.44
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	83.42
KOG2048	691	consensus WD40 repeat protein [General function pr	83.36
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	83.12
KOG3647	338	consensus Predicted coiled-coil protein [General f	83.11
PF02388	406	FemAB: FemAB family; InterPro: IPR003447 The femAB	83.1
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	83.08
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	83.03
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	82.96
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	82.93
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	82.89
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.85
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	82.83
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	82.6
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	82.5
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	82.48
COG3206	458	GumC Uncharacterized protein involved in exopolysa	82.48
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	82.44
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	82.43
PRK09343	121	prefoldin subunit beta; Provisional	82.42
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	82.38
KOG3838	497	consensus Mannose lectin ERGIC-53, involved in gly	82.3
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	82.28
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	82.15
KOG3990	305	consensus Uncharacterized conserved protein [Funct	82.05
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	81.99
PLN00181	793	protein SPA1-RELATED; Provisional	81.98
PRK10115	686	protease 2; Provisional	81.92
KOG0979	1072	consensus Structural maintenance of chromosome pro	81.76
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	81.74
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	81.69
KOG0649	325	consensus WD40 repeat protein [General function pr	81.41
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	81.4
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	81.37
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	81.12
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	81.02
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	81.0
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	80.92
PF05064	116	Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR	80.91
PRK10803	263	tol-pal system protein YbgF; Provisional	80.9
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	80.89
KOG4807	593	consensus F-actin binding protein, regulates actin	80.81
PRK02119	73	hypothetical protein; Provisional	80.78
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	80.76
PRK13169	110	DNA replication intiation control protein YabA; Re	80.73
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	80.67
COG3206	458	GumC Uncharacterized protein involved in exopolysa	80.64
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	80.59
PRK11519	719	tyrosine kinase; Provisional	80.59
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.55
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	80.4
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	80.22
PF02646	304	RmuC: RmuC family; InterPro: IPR003798 This protei	80.22
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	80.21
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	80.06
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	80.05

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=8.6e-46  Score=376.72  Aligned_cols=313  Identities=20%  Similarity=0.281  Sum_probs=259.1

Q ss_pred             CCCeEeeCCC----CceEEeecCCCCCCccccceEEEECCEEEEEcCCCC--CccCCceEEEEccCCceeeeccccccCC
Q 010551            3 SGSWHLELPY----DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~   76 (507)
                      .++|++++.+    ++|..++..+.+|.||.+|+++++++.||++||...  ....+++++||+.+++|..++.+..   
T Consensus       137 ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~---  213 (470)
T PLN02193        137 LGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGD---  213 (470)
T ss_pred             eEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCC---
Confidence            3677778755    899999977778999999999999999999999653  2345789999999999998766532   


Q ss_pred             CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLII  156 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~  156 (507)
                               .|+.+|.+|++++++++||++||..... .++++++||+.+++|+.+.+.+..|.+|.+|++++++++||+
T Consensus       214 ---------~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv  283 (470)
T PLN02193        214 ---------VPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV  283 (470)
T ss_pred             ---------CCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE
Confidence                     1222467999999999999999987544 478999999999999999865556899999999999999999


Q ss_pred             EcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          157 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       157 ~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      |||.+... ..+++++||+.+++|+.+++.+.+|.+|.+|+++++++ ++||+||.++. ..+++++||+.+++|+.+..
T Consensus       284 ~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~  360 (470)
T PLN02193        284 FGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGC-EVDDVHYYDPVQDKWTQVET  360 (470)
T ss_pred             ECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCC-ccCceEEEECCCCEEEEecc
Confidence            99987543 47899999999999999987777888999999998855 59999997643 46899999999999999877


Q ss_pred             CCCCCCCCCccEEEEECCeEEEEeccCCC---------CCcceEEEEECCCCcEEEeccCCC--CCCCCCCCCceEEEEE
Q 010551          237 KGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAII  305 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~v~~~~~--~~~~~~~~~~~~~~~~  305 (507)
                      .+..|.+|..|++++++++||||||....         ...+++|+||+.+++|+.+..++.  ..|.+|..+.++...+
T Consensus       361 ~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~  440 (470)
T PLN02193        361 FGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTI  440 (470)
T ss_pred             CCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEE
Confidence            67789999999999999999999997531         235789999999999999987653  3455665555555556


Q ss_pred             cCceEEEEEccCC--CCcCceEEEEECC
Q 010551          306 EGEHHLVAFGGYN--GKYNNEVFVMRLK  331 (507)
Q Consensus       306 ~~~~~l~v~GG~~--~~~~~~~~~~~~~  331 (507)
                      .+++.||+|||++  +...+|+|+|++.
T Consensus       441 ~~~~~~~~fGG~~~~~~~~~D~~~~~~~  468 (470)
T PLN02193        441 DGKKGLVMHGGKAPTNDRFDDLFFYGID  468 (470)
T ss_pred             cCCceEEEEcCCCCccccccceEEEecC
Confidence            6666799999996  4578999999874

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4e-44  Score=352.13  Aligned_cols=307  Identities=21%  Similarity=0.290  Sum_probs=246.1

Q ss_pred             CCCCceEEeecC-CCCCCccccceEEEECCEEEEEcCCCC--CccCCceEEEEccCCceeeeccccccCCCccccCCCcC
Q 010551           10 LPYDLWVTLPVS-GARPSPRYKHAAAVFDQKLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE   86 (507)
Q Consensus        10 ~~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~iyi~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      +....|..+... +.+|.||.+|++++++++|||+||...  ....+++++||+.+++|..++++...            
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~------------   71 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV------------   71 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC------------
Confidence            367789999763 457999999999999999999999743  33467999999999999988765421            


Q ss_pred             CCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC--CCCCCCCcCcEEEEECCEEEEEcCCCCCC
Q 010551           87 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVTRGGHSVTLVGSRLIIFGGEDRSR  164 (507)
Q Consensus        87 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~iy~~GG~~~~~  164 (507)
                      +...+.+|++++++++||+|||...... .+++++||+.+++|+.+...  ...|.+|..|++++++++||+|||.+...
T Consensus        72 p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~  150 (341)
T PLN02153         72 PRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG  150 (341)
T ss_pred             CCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC
Confidence            1223558999999999999999875543 67899999999999988631  12388999999999999999999986431


Q ss_pred             -----CccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC--------CCCCcEEEEECCCCcE
Q 010551          165 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--------IFFNDLHVLDLQTNEW  231 (507)
Q Consensus       165 -----~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~i~~~d~~~~~W  231 (507)
                           ..++++++||+.+++|..++..+..|.+|.+|+++++++ +|||+||.+..        ...+++++||+.+++|
T Consensus       151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W  229 (341)
T PLN02153        151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW  229 (341)
T ss_pred             ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence                 246789999999999999988766678999999888855 59999986421        2357899999999999


Q ss_pred             EecccCCCCCCCCCccEEEEECCeEEEEeccCC---------CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEE
Q 010551          232 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS  302 (507)
Q Consensus       232 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~---------~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~  302 (507)
                      +.+...+..|.+|..|++++++++||||||...         ....+++|.||+.+++|+.+.... ..|.|+.++.++.
T Consensus       230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~-~~~~pr~~~~~~~  308 (341)
T PLN02153        230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG-EPAMPRGWTAYTT  308 (341)
T ss_pred             EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC-CCCCCCccccccc
Confidence            998777778999999999999999999999632         122578999999999999986432 2344555555566


Q ss_pred             EEEcCceEEEEEccCCC--CcCceEEEEECC
Q 010551          303 AIIEGEHHLVAFGGYNG--KYNNEVFVMRLK  331 (507)
Q Consensus       303 ~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~  331 (507)
                      +.+.+++.|||+||+++  ...+|+|.|+..
T Consensus       309 ~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~  339 (341)
T PLN02153        309 ATVYGKNGLLMHGGKLPTNERTDDLYFYAVN  339 (341)
T ss_pred             cccCCcceEEEEcCcCCCCccccceEEEecc
Confidence            66677778999999965  367999999764

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=1.6e-44  Score=314.81  Aligned_cols=293  Identities=26%  Similarity=0.480  Sum_probs=246.2

Q ss_pred             ceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccC-----CceEEEEccCCceeeeccccccCCCccccCCCcCCC
Q 010551           14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFL-----SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVL   88 (507)
Q Consensus        14 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~-----~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p   88 (507)
                      .|+.--..|   +.|.+|+++.+|+.||-|||+..+...     -+|.++|..+.+|.++++.....+.+..   -+..|
T Consensus         3 ~WTVHLeGG---PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~---yp~VP   76 (392)
T KOG4693|consen    3 TWTVHLEGG---PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESP---YPAVP   76 (392)
T ss_pred             eEEEEecCC---cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCC---CCccc
Confidence            577776545   459999999999999999997765332     3799999999999999874322111111   13456


Q ss_pred             CCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC-CCCcc
Q 010551           89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR-SRKLL  167 (507)
Q Consensus        89 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~-~~~~~  167 (507)
                      -.|++|++|.+.+++|+|||.+......|.++.||+.++.|.+...+|..|.+|.+|+++++++.+|+|||+.. ..++.
T Consensus        77 yqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS  156 (392)
T KOG4693|consen   77 YQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFS  156 (392)
T ss_pred             hhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhh
Confidence            67999999999999999999999888899999999999999999999999999999999999999999999954 35678


Q ss_pred             CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC---------CCCCcEEEEECCCCcEEecccCC
Q 010551          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS---------IFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~---------~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      ++++.+|+.|.+|+.+.+.|.+|.-|.+|++++++ ..+|||||.++.         .+++.+..+|+.|+.|......+
T Consensus       157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~  235 (392)
T KOG4693|consen  157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT  235 (392)
T ss_pred             ccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence            99999999999999999999999999999999996 669999998643         46678999999999999987777


Q ss_pred             CCCCCCCccEEEEECCeEEEEeccCCC--CCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc
Q 010551          239 DLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG  316 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG  316 (507)
                      -.|..|..|++.++++.+|||||+++.  ..++|+|.||+.+..|+.|. ..+..|.+|.+.  |+++..+  .+|+|||
T Consensus       236 ~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~-~~Gk~P~aRRRq--C~~v~g~--kv~LFGG  310 (392)
T KOG4693|consen  236 MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS-VRGKYPSARRRQ--CSVVSGG--KVYLFGG  310 (392)
T ss_pred             cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee-ccCCCCCcccce--eEEEECC--EEEEecC
Confidence            788999999999999999999998875  34899999999999999885 455555555544  4555555  7999999


Q ss_pred             CC
Q 010551          317 YN  318 (507)
Q Consensus       317 ~~  318 (507)
                      ..
T Consensus       311 Ts  312 (392)
T KOG4693|consen  311 TS  312 (392)
T ss_pred             CC
Confidence            65

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=8.2e-40  Score=331.60  Aligned_cols=298  Identities=33%  Similarity=0.587  Sum_probs=261.0

Q ss_pred             ecCCCCCCccccceEEEECCEEEEEcCCCCCccCCc--eEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeE
Q 010551           19 PVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM   96 (507)
Q Consensus        19 ~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~--~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~   96 (507)
                      ..++..|.+|++|+++.+++++|||||...+....+  +|+||..+..|....+.+.             .|.+|.+|++
T Consensus        52 ~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~-------------~p~~r~g~~~  118 (482)
T KOG0379|consen   52 DVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD-------------EPSPRYGHSL  118 (482)
T ss_pred             ccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCC-------------CCCcccceeE
Confidence            356788999999999999999999999776655555  9999999999999888764             4789999999


Q ss_pred             EEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECC
Q 010551           97 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus        97 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      ++++++||+|||.+......++++.||+.|++|+.+.+.|.+|++|.+|+++++++++|||||.+......|++|+||+.
T Consensus       119 ~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~  198 (482)
T KOG0379|consen  119 SAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE  198 (482)
T ss_pred             EEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccc
Confidence            99999999999999755568899999999999999999999999999999999999999999998877689999999999


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  255 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  255 (507)
                      +.+|.++.+.|..|.||.+|+++++++. ++||||.+ +..+++|+|.||+.+..|..+...+..|.+|++|+++..+++
T Consensus       199 ~~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~  277 (482)
T KOG0379|consen  199 TSTWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDH  277 (482)
T ss_pred             cccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCE
Confidence            9999999999999999999999999777 66666655 778999999999999999988888999999999999999999


Q ss_pred             EEEEeccCCC--CCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC--CCcCceEEEEEC
Q 010551          256 WYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRL  330 (507)
Q Consensus       256 l~v~GG~~~~--~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~~  330 (507)
                      ++++||....  ..+.++|.||+.+..|..+.......|.++..+..+.+...+...+.++||..  +....+++.+..
T Consensus       278 ~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (482)
T KOG0379|consen  278 LLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQI  356 (482)
T ss_pred             EEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccc
Confidence            9999998775  25889999999999999998777566778888888877777777777778733  345556655544

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=1.2e-38  Score=324.34  Aligned_cols=291  Identities=21%  Similarity=0.315  Sum_probs=234.0

Q ss_pred             cccceEEEECCEEEEEcCCCCCccCCc--eEEEEccC----CceeeeccccccCCCccccCCCcCCCCCccceeEEEECC
Q 010551           28 RYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT  101 (507)
Q Consensus        28 r~~~~~~~~~~~iyi~GG~~~~~~~~~--~~~~d~~~----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~  101 (507)
                      ..+...++.+++|+.|+|..... ++.  ++.+++.+    ++|.++.+..             ..|.+|.+|+++++++
T Consensus       111 ~~g~~f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~-------------~~P~pR~~h~~~~~~~  176 (470)
T PLN02193        111 RPGVKFVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG-------------EGPGLRCSHGIAQVGN  176 (470)
T ss_pred             CCCCEEEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC-------------CCCCCccccEEEEECC
Confidence            34555566699999999976543 444  45557644    8999987653             3478999999999999


Q ss_pred             EEEEEeccCCCC-CCcceEEEEECCCCcEEEeecCCCCCC-CCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          102 KLLILGGHYKKS-SDSMIVRFIDLETNLCGVMETSGKVPV-TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       102 ~lyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      +||++||..... ...+++|+||+.+++|+.+++.+++|. +|.+|++++++++||+|||.+... .+|++++||+.+++
T Consensus       177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~  255 (470)
T PLN02193        177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNE  255 (470)
T ss_pred             EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCE
Confidence            999999985432 234689999999999999877666665 467899999999999999987543 58999999999999


Q ss_pred             EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEE
Q 010551          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV  259 (507)
Q Consensus       180 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~  259 (507)
                      |+.+.+.+..|.+|+.|+++++ +++||||||.+.....++++.||+.+++|+.+...+.+|.+|..|+++++++++||+
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi  334 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV  334 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence            9999876666889999999887 456999999987778899999999999999987666678899999999999999999


Q ss_pred             eccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC----------CcCceEEEEE
Q 010551          260 GGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMR  329 (507)
Q Consensus       260 GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~~  329 (507)
                      ||.++. .++++++||+.+++|+.++.+.. .|.+|..+.  ++++.  +.||||||...          ...+++|+||
T Consensus       335 GG~~g~-~~~dv~~yD~~t~~W~~~~~~g~-~P~~R~~~~--~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D  408 (470)
T PLN02193        335 YGFNGC-EVDDVHYYDPVQDKWTQVETFGV-RPSERSVFA--SAAVG--KHIVIFGGEIAMDPLAHVGPGQLTDGTFALD  408 (470)
T ss_pred             ECCCCC-ccCceEEEECCCCEEEEeccCCC-CCCCcceeE--EEEEC--CEEEEECCccCCccccccCccceeccEEEEE
Confidence            997653 46899999999999999876532 344554444  34444  37999999752          2457999999


Q ss_pred             CCCCCCCCCcc
Q 010551          330 LKPRDIPRPKI  340 (507)
Q Consensus       330 ~~~~~w~~~~~  340 (507)
                      +.++.|.....
T Consensus       409 ~~t~~W~~~~~  419 (470)
T PLN02193        409 TETLQWERLDK  419 (470)
T ss_pred             cCcCEEEEccc
Confidence            99999997664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.1e-39  Score=333.41  Aligned_cols=252  Identities=28%  Similarity=0.416  Sum_probs=233.8

Q ss_pred             CeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEEccCCceeeeccccccCCCccccCC
Q 010551            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      +-+|||.++.|..++   ++|.+|..++++++++.||++||.+ +....+++++||+.+++|..++++..          
T Consensus       303 ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~----------  369 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT----------  369 (571)
T ss_pred             eEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC----------
Confidence            458999999999999   7999999999999999999999998 67888999999999999999888754          


Q ss_pred             CcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCC
Q 010551           84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRS  163 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~  163 (507)
                            +|.+++++++++.||++||.++... .+++++||+.+++|+.+.   +|+.+|.+|++++++++||++||.+..
T Consensus       370 ------~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  370 ------KRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             ------ccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCC
Confidence                  6999999999999999999996555 889999999999999998   899999999999999999999999988


Q ss_pred             CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCC
Q 010551          164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG  243 (507)
Q Consensus       164 ~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~  243 (507)
                      ..+++++.+|||.+++|+.+++   ++.+|.+++++++ +++||++||.++......+.+||+.+++|+.+   .+++.+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~---M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m~~~  512 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAP---MNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APMTSP  512 (571)
T ss_pred             ccccceEEEEcCCCCceeecCC---cccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccCccc
Confidence            7689999999999999999985   7889999998888 55599999999876777899999999999997   678899


Q ss_pred             CCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          244 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       244 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      |+.+.++++++.+|++||.++...++.+..||+.+++|+.+..
T Consensus       513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             cccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            9999999999999999999999999999999999999999876

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=4.1e-39  Score=331.29  Aligned_cols=283  Identities=24%  Similarity=0.348  Sum_probs=242.8

Q ss_pred             CCCccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCE
Q 010551           24 RPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK  102 (507)
Q Consensus        24 ~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~  102 (507)
                      ++.+|..... ...+.||++||..+ ....+.+..||+.++.|..+..++                .+|..+++++++|.
T Consensus       272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~----------------~~r~~~~~~~~~~~  334 (571)
T KOG4441|consen  272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP----------------SPRCRVGVAVLNGK  334 (571)
T ss_pred             ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC----------------cccccccEEEECCE
Confidence            3444443332 45689999999886 788899999999999999998764                47999999999999


Q ss_pred             EEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEE
Q 010551          103 LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA  182 (507)
Q Consensus       103 lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~  182 (507)
                      ||++||++......+++++||+.+++|+.++   +|+.+|.+++++++++.||++||.++.. +++++++||+.+++|..
T Consensus       335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTP  410 (571)
T ss_pred             EEEEccccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccc
Confidence            9999999953345889999999999999988   8999999999999999999999999544 58999999999999999


Q ss_pred             eccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC-CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEec
Q 010551          183 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG  261 (507)
Q Consensus       183 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG  261 (507)
                      +.+   ++.+|++|+++++ +++||++||.++.. +++.+.+||+.+++|+.+   ++++.+|.+|++++++++||++||
T Consensus       411 va~---m~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~~iYvvGG  483 (571)
T KOG4441|consen  411 VAP---MLTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNGKIYVVGG  483 (571)
T ss_pred             cCC---CCcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECCEEEEECC
Confidence            974   6779999999998 55599999998776 999999999999999996   789999999999999999999999


Q ss_pred             cCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCCCcc
Q 010551          262 GDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKI  340 (507)
Q Consensus       262 ~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~~~~  340 (507)
                      .++......+..||+.+++|+.+.+++..      +.....+++.+  .+|++||+++. ..+.+..||+.++.|.....
T Consensus       484 ~~~~~~~~~VE~ydp~~~~W~~v~~m~~~------rs~~g~~~~~~--~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  484 FDGTSALSSVERYDPETNQWTMVAPMTSP------RSAVGVVVLGG--KLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             ccCCCccceEEEEcCCCCceeEcccCccc------cccccEEEECC--EEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            98866677899999999999999776543      33333444544  89999999875 78899999999999997666


Q ss_pred             cC
Q 010551          341 FQ  342 (507)
Q Consensus       341 ~~  342 (507)
                      +.
T Consensus       556 ~~  557 (571)
T KOG4441|consen  556 PE  557 (571)
T ss_pred             cc
Confidence            43

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-39  Score=332.89  Aligned_cols=251  Identities=12%  Similarity=0.152  Sum_probs=218.7

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+|+||+.+++|..++   ++|.+|.+|+++++++.||++||.. +....+++++||+.++.|..++++           
T Consensus       273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-----------  338 (557)
T PHA02713        273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-----------  338 (557)
T ss_pred             CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-----------
Confidence            4799999999999999   7999999999999999999999975 345678999999999999988866           


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~  162 (507)
                           |.+|.+|++++++++||++||.+... ..+++++||+.+++|+.++   +||.+|.++++++++++||++||.+.
T Consensus       339 -----~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~  409 (557)
T PHA02713        339 -----IKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTE  409 (557)
T ss_pred             -----cchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCc
Confidence                 44799999999999999999986543 3678999999999999988   89999999999999999999999864


Q ss_pred             CC-----------------CccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCC-CCcEEEE
Q 010551          163 SR-----------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF-FNDLHVL  224 (507)
Q Consensus       163 ~~-----------------~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~i~~~  224 (507)
                      ..                 ...+.+++|||.+++|+.++   +++.+|..++++++++ +|||+||.++... .+.+++|
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKD-DIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             ccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECC-EEEEEeCCCCCCccceeEEEe
Confidence            21                 13678999999999999887   4788999999988855 5999999865433 3468999


Q ss_pred             ECCC-CcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccC
Q 010551          225 DLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       225 d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~  287 (507)
                      |+.+ ++|+.+   +++|.+|..+++++++++||++||.++.   ..+..||+.+++|+.+.+.
T Consensus       486 dp~~~~~W~~~---~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        486 NTNTYNGWELI---TTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             cCCCCCCeeEc---cccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhh
Confidence            9999 899987   6899999999999999999999998763   3678999999999998654

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4.2e-38  Score=309.44  Aligned_cols=263  Identities=21%  Similarity=0.287  Sum_probs=211.9

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCc-cccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSP-RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      +++|+||+.+++|..++..+..|.+ +.+|++++++++||+|||.......+++++||+.+++|..++.+..        
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~--------  121 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDE--------  121 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCC--------
Confidence            5799999999999999865444443 4589999999999999998777778899999999999999876532        


Q ss_pred             CCCcCCCCCccceeEEEECCEEEEEeccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLII  156 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~  156 (507)
                         ...|.+|.+|++++++++|||+||......     ..+++++||+.+++|+.++..+.+|.+|.+|++++++++||+
T Consensus       122 ---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv  198 (341)
T PLN02153        122 ---EGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWV  198 (341)
T ss_pred             ---CCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEE
Confidence               234778999999999999999999864321     346899999999999999866666789999999999999999


Q ss_pred             EcCCCCC-------CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC---------CCCCCCc
Q 010551          157 FGGEDRS-------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFND  220 (507)
Q Consensus       157 ~GG~~~~-------~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~~  220 (507)
                      +||.+..       ....+++++||+.+++|+.+...+.+|.+|..|++++++ ++||||||..         .....|+
T Consensus       199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~  277 (341)
T PLN02153        199 VYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNE  277 (341)
T ss_pred             EeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECcccCCcccccccccccccc
Confidence            9997421       123688999999999999999888889999999999885 5699999973         2345689


Q ss_pred             EEEEECCCCcEEecccCCCCCCC--CCccEEEE-E-CCeEEEEeccCCC-CCcceEEEEECC
Q 010551          221 LHVLDLQTNEWSQPEIKGDLVTG--RAGHAGIT-I-DENWYIVGGGDNN-NGCQETIVLNMT  277 (507)
Q Consensus       221 i~~~d~~~~~W~~~~~~~~~p~~--r~~~~~~~-~-~~~l~v~GG~~~~-~~~~~~~~~d~~  277 (507)
                      +|.||+.+++|+.+...+..|.|  +..|+++. . ++++||+||.+.. ..+.|+|.|+..
T Consensus       278 v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~  339 (341)
T PLN02153        278 GYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN  339 (341)
T ss_pred             EEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence            99999999999987543333444  44444443 3 3589999998664 567899999754

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=3.8e-39  Score=281.16  Aligned_cols=248  Identities=25%  Similarity=0.435  Sum_probs=220.4

Q ss_pred             CCCeEeeCCCCceEEeecC----------CCCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccc
Q 010551            3 SGSWHLELPYDLWVTLPVS----------GARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLE   71 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~----------~~~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~   71 (507)
                      +|+=++|-.+-+|+++|..          ...|.-|++|+++.+.+++|+|||.++ ....|.++.|||.++.|++....
T Consensus        44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~  123 (392)
T KOG4693|consen   44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVE  123 (392)
T ss_pred             ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccccccccccee
Confidence            4677888999999999851          124567999999999999999999776 56678999999999999987766


Q ss_pred             cccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCC-CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE
Q 010551           72 TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV  150 (507)
Q Consensus        72 ~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~  150 (507)
                      +             ..|.+|-+|++|++|+.+|||||+..... ++++++++|++|.+|+.+.+.|++|.-|..|+++++
T Consensus       124 G-------------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~  190 (392)
T KOG4693|consen  124 G-------------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI  190 (392)
T ss_pred             e-------------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc
Confidence            4             56889999999999999999999976654 688999999999999999999999999999999999


Q ss_pred             CCEEEEEcCCCCC--------CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC--CCCCc
Q 010551          151 GSRLIIFGGEDRS--------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--IFFND  220 (507)
Q Consensus       151 ~~~iy~~GG~~~~--------~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~  220 (507)
                      ++.+|+|||....        ..+++.+..||+.|..|......+..|..|..|++.++ ++.+|||||+.+.  ..+||
T Consensus       191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~Hfnd  269 (392)
T KOG4693|consen  191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFND  269 (392)
T ss_pred             cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcc
Confidence            9999999998542        34678899999999999999888888999999999998 5559999999764  67899


Q ss_pred             EEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCC
Q 010551          221 LHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       221 i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                      +|.||+.+..|..+...|.-|.+|..+++++.++++|+|||...
T Consensus       270 Ly~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  270 LYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             eeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence            99999999999999999999999999999999999999999653

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-36  Score=311.88  Aligned_cols=267  Identities=12%  Similarity=0.187  Sum_probs=218.4

Q ss_pred             EEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcce
Q 010551           39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  118 (507)
Q Consensus        39 ~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~  118 (507)
                      .|++.||.. ......+++||+.+++|..++++                |.+|.+|++++++++||++||........++
T Consensus       259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~m----------------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~  321 (557)
T PHA02713        259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTI----------------PNHIINYASAIVDNEIIIAGGYNFNNPSLNK  321 (557)
T ss_pred             EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCC----------------CccccceEEEEECCEEEEEcCCCCCCCccce
Confidence            355555521 22335789999999999998866                4468899999999999999998643334688


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceE
Q 010551          119 VRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  198 (507)
Q Consensus       119 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~  198 (507)
                      +++||+.++.|..++   +||.+|..+++++++++||++||.++.. ..+++++||+.+++|..++   ++|.+|..+++
T Consensus       322 v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~  394 (557)
T PHA02713        322 VYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGM  394 (557)
T ss_pred             EEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccE
Confidence            999999999999887   8999999999999999999999987543 4788999999999999987   48889999999


Q ss_pred             EEEcCCEEEEEcCCCCC------------------CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEe
Q 010551          199 ALHANRYLIVFGGCSHS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG  260 (507)
Q Consensus       199 ~~~~~~~l~v~GG~~~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G  260 (507)
                      +++ +++||++||.+..                  ...+.+++||+.+++|+.+   +++|.+|..+++++++++|||+|
T Consensus       395 ~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~~IYv~G  470 (557)
T PHA02713        395 CVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKDDIYVVC  470 (557)
T ss_pred             EEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECCEEEEEe
Confidence            888 5569999998642                  1357899999999999986   68889999999999999999999


Q ss_pred             ccCCCCCc-ceEEEEECCC-CcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCCCC
Q 010551          261 GGDNNNGC-QETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP  338 (507)
Q Consensus       261 G~~~~~~~-~~~~~~d~~~-~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~  338 (507)
                      |.++.... +.+++||+.+ ++|+.++++|.+      +..+.++++.+  .||++||+++  ...+.+||+.+++|...
T Consensus       471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~------r~~~~~~~~~~--~iyv~Gg~~~--~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        471 DIKDEKNVKTCIFRYNTNTYNGWELITTTESR------LSALHTILHDN--TIMMLHCYES--YMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CCCCCCccceeEEEecCCCCCCeeEccccCcc------cccceeEEECC--EEEEEeeecc--eeehhhcCcccccccch
Confidence            98654333 3578999999 899999877543      34455556655  8999999887  35789999999999976


Q ss_pred             cccCC
Q 010551          339 KIFQS  343 (507)
Q Consensus       339 ~~~~~  343 (507)
                      ...++
T Consensus       541 ~~~~~  545 (557)
T PHA02713        541 CHQHS  545 (557)
T ss_pred             hhhcC
Confidence            65443

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=7.6e-37  Score=288.43  Aligned_cols=303  Identities=25%  Similarity=0.447  Sum_probs=249.9

Q ss_pred             CCceEEeec-CCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCC
Q 010551           12 YDLWVTLPV-SGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP   90 (507)
Q Consensus        12 ~~~W~~~~~-~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~   90 (507)
                      --+|.++.. +|+.|.||.+|.++++..-|.||||-+.+ ..+.+.+||..++.|..-..-+             ..|++
T Consensus        16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrG-------------DiPpg   81 (830)
T KOG4152|consen   16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRG-------------DIPPG   81 (830)
T ss_pred             ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcC-------------CCCCc
Confidence            347988854 58999999999999999999999996544 5788999999999998776665             45999


Q ss_pred             ccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeec----CCCCCCCCcCcEEEEECCEEEEEcCCCCC---
Q 010551           91 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET----SGKVPVTRGGHSVTLVGSRLIIFGGEDRS---  163 (507)
Q Consensus        91 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~iy~~GG~~~~---  163 (507)
                      ...|+.+..|.+||+|||+...+.++|++|.+....-.|+++.+    +|.+|.+|.+|+...++++.|+|||...+   
T Consensus        82 cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD  161 (830)
T KOG4152|consen   82 CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED  161 (830)
T ss_pred             hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence            99999999999999999999988889999888777777887654    68899999999999999999999997432   


Q ss_pred             -----CCccCcEEEEECCCC----cEEEeccCCCCCCCCCCceEEEEc-----CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          164 -----RKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       164 -----~~~~n~~~~~d~~t~----~W~~~~~~~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                           ..|+||+|.+++.-+    .|..+...|..|.+|-.|+++++.     ..++|||||.++ ..+.|+|.+|+++.
T Consensus       162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl  240 (830)
T KOG4152|consen  162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTL  240 (830)
T ss_pred             cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEeccee
Confidence                 247899999998744    599999999999999999999983     246999999864 46789999999999


Q ss_pred             cEEecccCCCCCCCCCccEEEEECCeEEEEeccCCC--------------CCcceEEEEECCCCcEEEeccC-CCCCCCC
Q 010551          230 EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------------NGCQETIVLNMTKLAWSILTSV-KGRNPLA  294 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------------~~~~~~~~~d~~~~~W~~v~~~-~~~~~~~  294 (507)
                      +|.+++..|-.|.||+.|+++.|+|+||||||+...              .+.+.+-.+|+.+..|..+-.. ......|
T Consensus       241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiP  320 (830)
T KOG4152|consen  241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIP  320 (830)
T ss_pred             ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccc
Confidence            999999999999999999999999999999996311              1244566889999999986322 2222345


Q ss_pred             CCCCceEEEEEcCceEEEEEccCCCC--------cCceEEEEECC
Q 010551          295 SEGLSVCSAIIEGEHHLVAFGGYNGK--------YNNEVFVMRLK  331 (507)
Q Consensus       295 ~~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~  331 (507)
                      |.|..||++.+..  .||+..|.++.        ...|+|.||.+
T Consensus       321 R~RAGHCAvAigt--RlYiWSGRDGYrKAwnnQVCCkDlWyLdTe  363 (830)
T KOG4152|consen  321 RARAGHCAVAIGT--RLYIWSGRDGYRKAWNNQVCCKDLWYLDTE  363 (830)
T ss_pred             cccccceeEEecc--EEEEEeccchhhHhhccccchhhhhhhccc
Confidence            5566666666655  89999998753        45678888864

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=8.7e-36  Score=311.16  Aligned_cols=252  Identities=19%  Similarity=0.304  Sum_probs=214.8

Q ss_pred             EeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccccccCCCccccCCCc
Q 010551            7 HLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL   85 (507)
Q Consensus         7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~   85 (507)
                      +|++...+|..++   +.| .+..|+++++++.||++||... ....++++.||+.+++|..++.+              
T Consensus       268 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~--------------  329 (534)
T PHA03098        268 TNYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL--------------  329 (534)
T ss_pred             ecchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC--------------
Confidence            5788888999886   344 3556789999999999999765 34567999999999999887754              


Q ss_pred             CCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCC
Q 010551           86 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRK  165 (507)
Q Consensus        86 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~  165 (507)
                        |.+|.+|++++++++||++||..... ..+++++||+.+++|+..+   ++|.+|.+|+++.++++||++||......
T Consensus       330 --~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~  403 (534)
T PHA03098        330 --IYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDE  403 (534)
T ss_pred             --CcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCc
Confidence              44799999999999999999987433 4778999999999999987   89999999999999999999999865555


Q ss_pred             ccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC---CCCcEEEEECCCCcEEecccCCCCCC
Q 010551          166 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVT  242 (507)
Q Consensus       166 ~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~  242 (507)
                      .++++++||+.+++|+.+.   ++|.+|.+|+++.+ +++|||+||.+...   .++.+++||+.+++|+.+   +++|.
T Consensus       404 ~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~  476 (534)
T PHA03098        404 LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNF  476 (534)
T ss_pred             ccceEEEEeCCCCeeeecC---CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCc
Confidence            5799999999999999886   47889999998887 45699999986432   356799999999999997   56778


Q ss_pred             CCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCC
Q 010551          243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  289 (507)
Q Consensus       243 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~  289 (507)
                      +|..++++.+++++||+||.+.....+++++||+.+++|+.++.+|.
T Consensus       477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            89999999999999999998876667899999999999999876543

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=2e-36  Score=279.23  Aligned_cols=247  Identities=23%  Similarity=0.392  Sum_probs=213.4

Q ss_pred             CCCCccccceEEEE--CCEEEEEcC--CCC--CccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeE
Q 010551           23 ARPSPRYKHAAAVF--DQKLYIVGG--SRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM   96 (507)
Q Consensus        23 ~~p~~r~~~~~~~~--~~~iyi~GG--~~~--~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~   96 (507)
                      ++|.||.+.++++.  .+.|++|||  +++  ....|++|.||+.+++|+++...              .+|+||++|.+
T Consensus        62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp--------------n~P~pRsshq~  127 (521)
T KOG1230|consen   62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP--------------NAPPPRSSHQA  127 (521)
T ss_pred             CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC--------------CCcCCCcccee
Confidence            68899999999876  568999999  332  24568999999999999998763              56899999999


Q ss_pred             EEEC-CEEEEEeccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC---CCCcc
Q 010551           97 VKWG-TKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR---SRKLL  167 (507)
Q Consensus        97 ~~~~-~~lyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~---~~~~~  167 (507)
                      |++- |.+|+|||.-...+     -..++|+||+.|++|+++...| .|.+|.+|-+++..++|++|||+..   +..|+
T Consensus       128 va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Yy  206 (521)
T KOG1230|consen  128 VAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYY  206 (521)
T ss_pred             EEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEe
Confidence            9996 89999999865544     3678999999999999998775 8999999999999999999999843   34578


Q ss_pred             CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC---------CCCCCCcEEEEECCC-----CcEEe
Q 010551          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQT-----NEWSQ  233 (507)
Q Consensus       168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~-----~~W~~  233 (507)
                      ||+|+||+++.+|+.+.+.|..|.||++|++.+..++.|||+||++         .+...+|+|.+++..     -.|..
T Consensus       207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k  286 (521)
T KOG1230|consen  207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK  286 (521)
T ss_pred             eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence            9999999999999999998889999999999999777799999985         346778999999988     57999


Q ss_pred             cccCCCCCCCCCccEEEEEC-CeEEEEeccCCC---------CCcceEEEEECCCCcEEEe
Q 010551          234 PEIKGDLVTGRAGHAGITID-ENWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~v  284 (507)
                      +...+-.|.||+++++++.. ++.+.|||....         ..+||+|.||+..+.|...
T Consensus       287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            98889999999999999885 489999996441         2368999999999999875

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1.4e-34  Score=285.57  Aligned_cols=271  Identities=19%  Similarity=0.199  Sum_probs=205.3

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEc--cCCceeeeccccccCCCccccCCCcCCCCCccceeEEEEC
Q 010551           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG  100 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~  100 (507)
                      ++|.+|..+++++++++|||+||..    .+++++||+  .+++|..++.++.               .+|..|++++++
T Consensus         3 ~lp~~~~~~~~~~~~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~p~---------------~~R~~~~~~~~~   63 (346)
T TIGR03547         3 DLPVGFKNGTGAIIGDKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADFPG---------------GPRNQAVAAAID   63 (346)
T ss_pred             CCCccccCceEEEECCEEEEEcccc----CCeeEEEECCCCCCCceECCCCCC---------------CCcccceEEEEC
Confidence            6899999999989999999999964    267999996  5788999886531               379999999999


Q ss_pred             CEEEEEeccCCCC-----CCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEE-EECCEEEEEcCCCCCC----------
Q 010551          101 TKLLILGGHYKKS-----SDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVT-LVGSRLIIFGGEDRSR----------  164 (507)
Q Consensus       101 ~~lyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~iy~~GG~~~~~----------  164 (507)
                      ++||++||.....     ...+++++||+.+++|+.+..  .+|.+|.+++++ +++++||++||.+...          
T Consensus        64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~  141 (346)
T TIGR03547        64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSA  141 (346)
T ss_pred             CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhh
Confidence            9999999986432     136789999999999999862  467788888776 6899999999986320          


Q ss_pred             -----------------------CccCcEEEEECCCCcEEEeccCCCCCC-CCCCceEEEEcCCEEEEEcCCCCCC-CCC
Q 010551          165 -----------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFN  219 (507)
Q Consensus       165 -----------------------~~~n~~~~~d~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~-~~~  219 (507)
                                             ...+++++||+.+++|+.+.+   +|. +|.+++++.+ +++|||+||..... ...
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~---~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~  217 (346)
T TIGR03547       142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE---NPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTA  217 (346)
T ss_pred             cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc---CCCCcCCCceEEEE-CCEEEEEeeeeCCCccch
Confidence                                   124789999999999999864   564 6788877777 55699999985432 234


Q ss_pred             cEEEEEC--CCCcEEecccCCCCCCCC-------CccEEEEECCeEEEEeccCCCC-----------------CcceEEE
Q 010551          220 DLHVLDL--QTNEWSQPEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIV  273 (507)
Q Consensus       220 ~i~~~d~--~~~~W~~~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~~~~  273 (507)
                      +++.|++  .+++|+.+.   ++|.+|       ..|++++++++|||+||.+...                 ....+.+
T Consensus       218 ~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  294 (346)
T TIGR03547       218 EVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV  294 (346)
T ss_pred             heEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence            5666654  677999873   455443       4566788999999999975211                 1235789


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC--CCcCceEEEEE
Q 010551          274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMR  329 (507)
Q Consensus       274 ~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~  329 (507)
                      ||+.+++|+.+.++|.    ++  ..++++++.+  .|||+||.+  +...++++.|.
T Consensus       295 yd~~~~~W~~~~~lp~----~~--~~~~~~~~~~--~iyv~GG~~~~~~~~~~v~~~~  344 (346)
T TIGR03547       295 YALDNGKWSKVGKLPQ----GL--AYGVSVSWNN--GVLLIGGENSGGKAVTDVYLLS  344 (346)
T ss_pred             EEecCCcccccCCCCC----Cc--eeeEEEEcCC--EEEEEeccCCCCCEeeeEEEEE
Confidence            9999999999987743    22  2333444444  899999987  34678888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=3.2e-34  Score=279.85  Aligned_cols=263  Identities=18%  Similarity=0.209  Sum_probs=198.6

Q ss_pred             CccccceEEEECCEEEEEcCCCCC----------ccCCceEEEEccC--CceeeeccccccCCCccccCCCcCCCCCccc
Q 010551           26 SPRYKHAAAVFDQKLYIVGGSRNG----------RFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSD   93 (507)
Q Consensus        26 ~~r~~~~~~~~~~~iyi~GG~~~~----------~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~   93 (507)
                      ..+.++.++++++.|||+||.+..          ...+++++|+...  ..|..++.+                |.+|..
T Consensus         2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l----------------p~~r~~   65 (323)
T TIGR03548         2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL----------------PYEAAY   65 (323)
T ss_pred             CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC----------------Cccccc
Confidence            457899999999999999997543          2456899886332  368887654                557888


Q ss_pred             eeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEE-EeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEE
Q 010551           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        94 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      +++++++++||++||...... .++++.||+.+++|. .....+++|.+|..|++++++++||++||.... ...+++++
T Consensus        66 ~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~  143 (323)
T TIGR03548        66 GASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYL  143 (323)
T ss_pred             eEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEE
Confidence            888999999999999875443 788999999999983 222234899999999999999999999997533 34789999


Q ss_pred             EECCCCcEEEeccCCCCC-CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCC--CCCCCCCccEE
Q 010551          173 LDLETMTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAG  249 (507)
Q Consensus       173 ~d~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~  249 (507)
                      ||+.+++|+.+++   +| .+|..|+++++ +++||||||.+.. ..+++++||+.+++|+.+....  ..|.++..++.
T Consensus       144 yd~~~~~W~~~~~---~p~~~r~~~~~~~~-~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~  218 (323)
T TIGR03548       144 FNLETQEWFELPD---FPGEPRVQPVCVKL-QNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS  218 (323)
T ss_pred             EcCCCCCeeECCC---CCCCCCCcceEEEE-CCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence            9999999999874   44 36888877777 5569999998643 3467899999999999975432  23444445554


Q ss_pred             EE-ECCeEEEEeccCCCC--------------------------------CcceEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          250 IT-IDENWYIVGGGDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASE  296 (507)
Q Consensus       250 ~~-~~~~l~v~GG~~~~~--------------------------------~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~  296 (507)
                      ++ .+++|||+||.+...                                ..+++++||+.+++|+.++.+|..   +|.
T Consensus       219 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---~r~  295 (323)
T TIGR03548       219 IKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF---ARC  295 (323)
T ss_pred             EEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc---ccC
Confidence            44 478999999976321                                125799999999999998865421   333


Q ss_pred             CCceEEEEEcCceEEEEEccCC
Q 010551          297 GLSVCSAIIEGEHHLVAFGGYN  318 (507)
Q Consensus       297 ~~~~~~~~~~~~~~l~v~GG~~  318 (507)
                      +  +.++.+++  .||++||..
T Consensus       296 ~--~~~~~~~~--~iyv~GG~~  313 (323)
T TIGR03548       296 G--AALLLTGN--NIFSINGEL  313 (323)
T ss_pred             c--hheEEECC--EEEEEeccc
Confidence            3  33445554  799999965

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=294.29  Aligned_cols=252  Identities=31%  Similarity=0.527  Sum_probs=221.5

Q ss_pred             cCCCCCccceeEEEECCEEEEEeccCCCCCCcc-eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCC
Q 010551           85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRS  163 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~  163 (507)
                      ...|.+|.+|+++.+++++|||||......... ++|+||..+..|.....+|..|.+|.+|+++.++++||+|||.+..
T Consensus        55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~  134 (482)
T KOG0379|consen   55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK  134 (482)
T ss_pred             CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence            356889999999999999999999987666333 6999999999999999999999999999999999999999999875


Q ss_pred             CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC-CCCcEEEEECCCCcEEecccCCCCCC
Q 010551          164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVT  242 (507)
Q Consensus       164 ~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~  242 (507)
                      ....++++.||+.|.+|..+.+.+.+|++|.+|++++++ +++|||||.+... ..|++|+||+.+.+|..+.+.++.|.
T Consensus       135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~  213 (482)
T KOG0379|consen  135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS  213 (482)
T ss_pred             CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence            556899999999999999999999999999999999997 6799999998776 89999999999999999999999999


Q ss_pred             CCCccEEEEECCeEEEEeccC-CCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-
Q 010551          243 GRAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-  320 (507)
Q Consensus       243 ~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-  320 (507)
                      ||.+|++++++++++||||.+ +...++|+|.||+.+..|..+. ..+..|.+|.+|..+  +.  +..++++||.... 
T Consensus       214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~--~~--~~~~~l~gG~~~~~  288 (482)
T KOG0379|consen  214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLT--VS--GDHLLLFGGGTDPK  288 (482)
T ss_pred             CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeE--EE--CCEEEEEcCCcccc
Confidence            999999999999999999988 6677899999999999999654 445557777777655  22  3468888887762 


Q ss_pred             --cCceEEEEECCCCCCCCCcccC
Q 010551          321 --YNNEVFVMRLKPRDIPRPKIFQ  342 (507)
Q Consensus       321 --~~~~~~~~~~~~~~w~~~~~~~  342 (507)
                        ...+.|.|+.....|.......
T Consensus       289 ~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  289 QEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cccccccccccccccceeeeeccc
Confidence              6899999999999998665443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=6.3e-34  Score=282.76  Aligned_cols=283  Identities=18%  Similarity=0.218  Sum_probs=210.8

Q ss_pred             ceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEcc--CCceeeeccccccCCCccccCCCcCCCCCc
Q 010551           14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPM   91 (507)
Q Consensus        14 ~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r   91 (507)
                      .++.+|   ++|.||..+++++++++|||+||...    +.++.||+.  ++.|..+++++               ..+|
T Consensus        18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p---------------~~~r   75 (376)
T PRK14131         18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFP---------------GGPR   75 (376)
T ss_pred             ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCC---------------CCCc
Confidence            456677   79999998899999999999999643    458999986  47899887553               2379


Q ss_pred             cceeEEEECCEEEEEeccCCC-----CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE-ECCEEEEEcCCCCC--
Q 010551           92 SDHCMVKWGTKLLILGGHYKK-----SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL-VGSRLIIFGGEDRS--  163 (507)
Q Consensus        92 ~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~iy~~GG~~~~--  163 (507)
                      .+|++++++++||++||....     ....+++++||+.+++|+.+.+  .+|.++.+|++++ .+++||+|||.+..  
T Consensus        76 ~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~  153 (376)
T PRK14131         76 EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIF  153 (376)
T ss_pred             ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHH
Confidence            999999999999999998641     1235789999999999999873  3577788888777 79999999997531  


Q ss_pred             -------------------------------CCccCcEEEEECCCCcEEEeccCCCCCC-CCCCceEEEEcCCEEEEEcC
Q 010551          164 -------------------------------RKLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       164 -------------------------------~~~~n~~~~~d~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG  211 (507)
                                                     ....+++++||+.+++|+.+.+   +|. +|.+|+++.+ +++|||+||
T Consensus       154 ~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~---~p~~~~~~~a~v~~-~~~iYv~GG  229 (376)
T PRK14131        154 DGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE---SPFLGTAGSAVVIK-GNKLWLING  229 (376)
T ss_pred             HHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc---CCCCCCCcceEEEE-CCEEEEEee
Confidence                                           0124789999999999998763   554 6777777776 556999999


Q ss_pred             CCCC-CCCCcEEE--EECCCCcEEecccCCCCCCCCC--------ccEEEEECCeEEEEeccCCCC--------------
Q 010551          212 CSHS-IFFNDLHV--LDLQTNEWSQPEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN--------------  266 (507)
Q Consensus       212 ~~~~-~~~~~i~~--~d~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~--------------  266 (507)
                      .... ...++++.  ||+.+++|..+.   ++|.+|.        .+.+++++++|||+||.+...              
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  306 (376)
T PRK14131        230 EIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE  306 (376)
T ss_pred             eECCCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence            7432 33455554  566889999873   4555543        233567899999999965321              


Q ss_pred             Cc---ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC--CcCceEEEEECCCCCC
Q 010551          267 GC---QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDI  335 (507)
Q Consensus       267 ~~---~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~~~w  335 (507)
                      ..   ..+.+||+.+++|+.++.+|.    ++..  +.++.+++  .|||+||...  ...++|++|.+..+.+
T Consensus       307 ~~~~~~~~e~yd~~~~~W~~~~~lp~----~r~~--~~av~~~~--~iyv~GG~~~~~~~~~~v~~~~~~~~~~  372 (376)
T PRK14131        307 GLKKSWSDEIYALVNGKWQKVGELPQ----GLAY--GVSVSWNN--GVLLIGGETAGGKAVSDVTLLSWDGKKL  372 (376)
T ss_pred             CCcceeehheEEecCCcccccCcCCC----Cccc--eEEEEeCC--EEEEEcCCCCCCcEeeeEEEEEEcCCEE
Confidence            11   235689999999999877654    3333  33445555  7999999753  4688999999876543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=1.2e-33  Score=275.77  Aligned_cols=236  Identities=17%  Similarity=0.212  Sum_probs=189.8

Q ss_pred             CCeEee-CCC-CceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCcee-eeccccccCCCccc
Q 010551            4 GSWHLE-LPY-DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS-NLRLETELDADKTE   80 (507)
Q Consensus         4 ~~~~~d-~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~~~~~~~   80 (507)
                      ++|+|+ +.. .+|..++   ++|.+|..|+++++++.||++||.......++++.||+.+++|. .....+        
T Consensus        40 ~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~--------  108 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG--------  108 (323)
T ss_pred             eeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--------
Confidence            577775 332 2799988   79999998889999999999999887777899999999999983 112221        


Q ss_pred             cCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCC-CCCcCcEEEEECCEEEEEcC
Q 010551           81 DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP-VTRGGHSVTLVGSRLIIFGG  159 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~iy~~GG  159 (507)
                           ..|.+|..|++++++++||++||..... ..+++++||+.+++|+.++   ++| .+|..+++++++++||+|||
T Consensus       109 -----~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG  179 (323)
T TIGR03548       109 -----NLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELYVFGG  179 (323)
T ss_pred             -----CCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEEEEcC
Confidence                 3366789999999999999999975433 3788999999999999987   566 47888999999999999999


Q ss_pred             CCCCCCccCcEEEEECCCCcEEEeccCC--CCCCCCCCceEEEEcCCEEEEEcCCCCCC---------------------
Q 010551          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHSI---------------------  216 (507)
Q Consensus       160 ~~~~~~~~n~~~~~d~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---------------------  216 (507)
                      .+..  ..+++++||+.+++|+.+.+..  ..|..+..++++++.+++|||+||.+...                     
T Consensus       180 ~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (323)
T TIGR03548       180 GSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKK  257 (323)
T ss_pred             CCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence            8643  2467899999999999997642  23444556666677778899999986421                     


Q ss_pred             -----------CCCcEEEEECCCCcEEecccCCCCC-CCCCccEEEEECCeEEEEeccCC
Q 010551          217 -----------FFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       217 -----------~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                                 ..+++++||+.+++|+.+.   ++| .+|+.++++.++++||++||...
T Consensus       258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~  314 (323)
T TIGR03548       258 EYFLKPPEWYNWNRKILIYNVRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELK  314 (323)
T ss_pred             HHhCCCccccCcCceEEEEECCCCeeeEcc---cccccccCchheEEECCEEEEEecccc
Confidence                       2367999999999999973   455 58999999999999999999543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=3e-33  Score=292.07  Aligned_cols=265  Identities=20%  Similarity=0.200  Sum_probs=212.9

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcc
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM  117 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~  117 (507)
                      ..+++.||..  .....+..|++.+.+|..++..+                 .+..|+++++++.||++||........+
T Consensus       251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~lyv~GG~~~~~~~~~  311 (534)
T PHA03098        251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDIH-----------------YVYCFGSVVLNNVIYFIGGMNKNNLSVN  311 (534)
T ss_pred             cceEeecccc--hhhceeeecchhhhhcccccCcc-----------------ccccceEEEECCEEEEECCCcCCCCeec
Confidence            4456666644  22345667888888888765321                 2456789999999999999976665567


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCce
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  197 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~  197 (507)
                      +++.||+.+++|..++   ++|.+|.+|+++.++++||++||.+. ....+++++||+.+++|+.++   ++|.+|++|+
T Consensus       312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~  384 (534)
T PHA03098        312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEP---PLIFPRYNPC  384 (534)
T ss_pred             cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCC---CcCcCCccce
Confidence            8999999999999887   78999999999999999999999874 335789999999999999886   4788999999


Q ss_pred             EEEEcCCEEEEEcCCCC-CCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCC---cceEEE
Q 010551          198 AALHANRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIV  273 (507)
Q Consensus       198 ~~~~~~~~l~v~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~~~~~  273 (507)
                      ++.++ ++|||+||... ...++++++||+.+++|+.+   .++|.+|.+|+++.+++++||+||.+....   ++++++
T Consensus       385 ~~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  460 (534)
T PHA03098        385 VVNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKG---SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES  460 (534)
T ss_pred             EEEEC-CEEEEECCcCCCCcccceEEEEeCCCCeeeec---CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence            98874 56999999743 34578999999999999986   578889999999999999999999764432   567999


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCCCcc
Q 010551          274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKI  340 (507)
Q Consensus       274 ~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~~~~  340 (507)
                      ||+.+++|+.++.++.    ++.++.  ++.++  +.|||+||.++. ..+++++||+..+.|...+.
T Consensus       461 yd~~~~~W~~~~~~~~----~r~~~~--~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        461 YNPVTNKWTELSSLNF----PRINAS--LCIFN--NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             ecCCCCceeeCCCCCc----ccccce--EEEEC--CEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence            9999999999876642    333443  34444  479999998755 37899999999999986654

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=9.3e-33  Score=272.55  Aligned_cols=245  Identities=22%  Similarity=0.356  Sum_probs=190.8

Q ss_pred             CCCeEeeC--CCCceEEeecCCCCC-CccccceEEEECCEEEEEcCCCCC------ccCCceEEEEccCCceeeeccccc
Q 010551            3 SGSWHLEL--PYDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRNG------RFLSDVQVFDLRSLAWSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyi~GG~~~~------~~~~~~~~~d~~~~~W~~~~~~~~   73 (507)
                      ..+|+||+  ..++|..++   ++| .+|..|++++++++||++||....      ..++++++||+.+++|+.++..  
T Consensus        29 ~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~--  103 (346)
T TIGR03547        29 TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR--  103 (346)
T ss_pred             CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC--
Confidence            46899996  678999999   688 589999999999999999997532      2468999999999999998632  


Q ss_pred             cCCCccccCCCcCCCCCccceeEE-EECCEEEEEeccCCCC---------------------------------CCcceE
Q 010551           74 LDADKTEDSGLLEVLPPMSDHCMV-KWGTKLLILGGHYKKS---------------------------------SDSMIV  119 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~---------------------------------~~~~~~  119 (507)
                                   .|.+|.+|+++ +++++||++||.....                                 ...+++
T Consensus       104 -------------~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  170 (346)
T TIGR03547       104 -------------SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV  170 (346)
T ss_pred             -------------CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence                         14467788777 7899999999986321                                 013789


Q ss_pred             EEEECCCCcEEEeecCCCCCC-CCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEE--CCCCcEEEeccCCCCCCCC---
Q 010551          120 RFIDLETNLCGVMETSGKVPV-TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD--LETMTWDAVEVTQTPPAPR---  193 (507)
Q Consensus       120 ~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d--~~t~~W~~~~~~~~~p~~r---  193 (507)
                      ++||+.+++|+.+.   +||. +|.+++++.++++||++||.........+++.|+  +.+++|+.+.+   +|.+|   
T Consensus       171 ~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~---m~~~r~~~  244 (346)
T TIGR03547       171 LSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP---LPPPKSSS  244 (346)
T ss_pred             EEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC---CCCCCCCc
Confidence            99999999999987   7875 6889999999999999999865433345666665  46779999875   44443   


Q ss_pred             ----CCceEEEEcCCEEEEEcCCCCCC-----------------CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE
Q 010551          194 ----YDHSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       194 ----~~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                          .+|+++++ +++|||+||.+...                 ..+.+.+||+.+++|+.+   +++|.+|..++++++
T Consensus       245 ~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~~~~~~~~~~  320 (346)
T TIGR03547       245 QEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV---GKLPQGLAYGVSVSW  320 (346)
T ss_pred             cccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc---CCCCCCceeeEEEEc
Confidence                34445566 56699999975211                 123578999999999987   678889999998899


Q ss_pred             CCeEEEEeccCCC-CCcceEEEEE
Q 010551          253 DENWYIVGGGDNN-NGCQETIVLN  275 (507)
Q Consensus       253 ~~~l~v~GG~~~~-~~~~~~~~~d  275 (507)
                      +++|||+||.+.. ..+++++.|.
T Consensus       321 ~~~iyv~GG~~~~~~~~~~v~~~~  344 (346)
T TIGR03547       321 NNGVLLIGGENSGGKAVTDVYLLS  344 (346)
T ss_pred             CCEEEEEeccCCCCCEeeeEEEEE
Confidence            9999999998654 3467777664

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=1.6e-32  Score=272.65  Aligned_cols=254  Identities=22%  Similarity=0.336  Sum_probs=195.8

Q ss_pred             CCCeEeeCC--CCceEEeecCCCCC-CccccceEEEECCEEEEEcCCCC------CccCCceEEEEccCCceeeeccccc
Q 010551            3 SGSWHLELP--YDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyi~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~~~   73 (507)
                      ..+|+||+.  .+.|..++   ++| .+|.+|+++++++.||++||...      ...++++++||+.+++|+.++... 
T Consensus        50 ~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~-  125 (376)
T PRK14131         50 TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS-  125 (376)
T ss_pred             CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC-
Confidence            347899986  47999998   566 58999999999999999999754      134689999999999999987421 


Q ss_pred             cCCCccccCCCcCCCCCccceeEEE-ECCEEEEEeccCCCC---------------------------------CCcceE
Q 010551           74 LDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKS---------------------------------SDSMIV  119 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~---------------------------------~~~~~~  119 (507)
                                    |.++.+|++++ .+++||++||.....                                 ...+++
T Consensus       126 --------------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v  191 (376)
T PRK14131        126 --------------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV  191 (376)
T ss_pred             --------------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence                          45677888877 799999999975320                                 024689


Q ss_pred             EEEECCCCcEEEeecCCCCCC-CCcCcEEEEECCEEEEEcCCCCCCCccCcEEE--EECCCCcEEEeccCCCCCCCCCC-
Q 010551          120 RFIDLETNLCGVMETSGKVPV-TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF--LDLETMTWDAVEVTQTPPAPRYD-  195 (507)
Q Consensus       120 ~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~--~d~~t~~W~~~~~~~~~p~~r~~-  195 (507)
                      ++||+.+++|+.+.   ++|. +|.+++++.++++||++||........++++.  ||+.+++|..+..   +|.+|.+ 
T Consensus       192 ~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~  265 (376)
T PRK14131        192 LSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD---LPPAPGGS  265 (376)
T ss_pred             EEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC---CCCCCcCC
Confidence            99999999999886   6775 78888999999999999997554334555554  5678999999874   4545432 


Q ss_pred             ------ceEEEEcCCEEEEEcCCCCCC-----------------CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE
Q 010551          196 ------HSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       196 ------~~~~~~~~~~l~v~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                            +.++++-+++|||+||.+...                 ....+.+||+.+++|+.+   +++|.+|..++++.+
T Consensus       266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~~  342 (376)
T PRK14131        266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVSW  342 (376)
T ss_pred             cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEEe
Confidence                  122333366799999975321                 112467899999999986   678999999999999


Q ss_pred             CCeEEEEeccCCC-CCcceEEEEECCCCcEEE
Q 010551          253 DENWYIVGGGDNN-NGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       253 ~~~l~v~GG~~~~-~~~~~~~~~d~~~~~W~~  283 (507)
                      +++|||+||.... ..+++++.|++..+.+..
T Consensus       343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        343 NNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            9999999997543 457899999988877653

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=254.16  Aligned_cols=216  Identities=28%  Similarity=0.519  Sum_probs=190.4

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEEC-CEEEEEcCCC--CC----ccCCceEEEEccCCceeeeccccccCC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD-QKLYIVGGSR--NG----RFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~iyi~GG~~--~~----~~~~~~~~~d~~~~~W~~~~~~~~~~~   76 (507)
                      +.|.||...+.|+.+... ..|+||.+|.+|++. +.+|||||-.  +.    ....++|+||+.++.|+++...     
T Consensus        99 dLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-----  172 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-----  172 (521)
T ss_pred             eeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-----
Confidence            689999999999999754 578899999999995 8999999932  21    3357999999999999999875     


Q ss_pred             CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCC---CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS  152 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~  152 (507)
                               +.|.||.+|-|++...+|++|||+.....   +.|++|+||++|-+|+++.+.|..|.+|.++++++. .+
T Consensus       173 ---------g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg  243 (521)
T KOG1230|consen  173 ---------GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQG  243 (521)
T ss_pred             ---------CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCC
Confidence                     45889999999999999999999865432   789999999999999999998889999999998888 89


Q ss_pred             EEEEEcCCCC--------CCCccCcEEEEECCC-----CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCC-----
Q 010551          153 RLIIFGGEDR--------SRKLLNDVHFLDLET-----MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH-----  214 (507)
Q Consensus       153 ~iy~~GG~~~--------~~~~~n~~~~~d~~t-----~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-----  214 (507)
                      .||++||++.        ....++|++.+++..     ..|..+.+.|..|.||+++++++..+++.|.|||..+     
T Consensus       244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeee  323 (521)
T KOG1230|consen  244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEE  323 (521)
T ss_pred             cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccc
Confidence            9999999863        345689999999988     6899999999999999999999999988999999853     


Q ss_pred             ----CCCCCcEEEEECCCCcEEec
Q 010551          215 ----SIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       215 ----~~~~~~i~~~d~~~~~W~~~  234 (507)
                          +.++||+|.||+..+.|...
T Consensus       324 Esl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  324 ESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             hhhhhhhhhhhhheecccchhhHh
Confidence                36789999999999999874

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=9.6e-32  Score=274.54  Aligned_cols=211  Identities=18%  Similarity=0.247  Sum_probs=184.4

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCC
Q 010551           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  112 (507)
Q Consensus        33 ~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~  112 (507)
                      ++.+++.||++||.+.....++++.|||.+++|..+++++                .+|..+++++++++||++||... 
T Consensus       267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~----------------~~r~~~~~v~~~~~iYviGG~~~-  329 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN----------------SPRLYASGVPANNKLYVVGGLPN-  329 (480)
T ss_pred             eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC----------------chhhcceEEEECCEEEEECCcCC-
Confidence            3457999999999876667789999999999999998764                47999999999999999999753 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                         .++++.||+.+++|+.++   +||.+|.++++++++++||++||.+..   .+.+.+|||.+++|+.+++   +|.+
T Consensus       330 ---~~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~  397 (480)
T PHA02790        330 ---PTSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYP  397 (480)
T ss_pred             ---CCceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCc
Confidence               246999999999999987   899999999999999999999998643   3679999999999999874   7889


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEE
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~  272 (507)
                      |..|+++++ +++|||+||.        +.+||+.+++|+.+   .++|.+|..+++++++++|||+||.++....+.+.
T Consensus       398 r~~~~~~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve  465 (480)
T PHA02790        398 HYKSCALVF-GRRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIE  465 (480)
T ss_pred             cccceEEEE-CCEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECCEEEEECCcCCCcccceEE
Confidence            999998888 4569999983        57899999999986   57888999999999999999999987555567899


Q ss_pred             EEECCCCcEEEe
Q 010551          273 VLNMTKLAWSIL  284 (507)
Q Consensus       273 ~~d~~~~~W~~v  284 (507)
                      .||+.+++|+..
T Consensus       466 ~Yd~~~~~W~~~  477 (480)
T PHA02790        466 VYNNRTYSWNIW  477 (480)
T ss_pred             EEECCCCeEEec
Confidence            999999999864

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.2e-30  Score=246.58  Aligned_cols=259  Identities=24%  Similarity=0.407  Sum_probs=218.1

Q ss_pred             eEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEEccCCceeeeccccccCCCccccCCC
Q 010551            6 WHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL   84 (507)
Q Consensus         6 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~   84 (507)
                      =+||..+++|.....-|+.|++-..|.++..|.+||+|||.- -+.++|++|.+-...-.|+++.+.....         
T Consensus        60 HvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n---------  130 (830)
T KOG4152|consen   60 HVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN---------  130 (830)
T ss_pred             hhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC---------
Confidence            368999999999999999999999999999999999999954 3788999988888777888887655330         


Q ss_pred             cCCCCCccceeEEEECCEEEEEeccCCCCC--------CcceEEEEECCCC----cEEEeecCCCCCCCCcCcEEEEE--
Q 010551           85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSS--------DSMIVRFIDLETN----LCGVMETSGKVPVTRGGHSVTLV--  150 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--------~~~~~~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~--  150 (507)
                      ..+|-||.+|+...++++.|+|||..++..        +++++|++++.-+    .|....+.|..|.+|..|+++.+  
T Consensus       131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e  210 (830)
T KOG4152|consen  131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE  210 (830)
T ss_pred             CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe
Confidence            345569999999999999999999854432        6899999998866    49999999999999999999887  


Q ss_pred             ----CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-------------
Q 010551          151 ----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-------------  213 (507)
Q Consensus       151 ----~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-------------  213 (507)
                          ..++|+|||.++  +.+.|+|.+|+++..|.+++..|..|.||+-|+++.|+|+ +|||||.-             
T Consensus       211 KDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnK-MyvfGGWVPl~~~~~~~~~he  287 (830)
T KOG4152|consen  211 KDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNK-MYVFGGWVPLVMDDVKVATHE  287 (830)
T ss_pred             ccCCcceEEEEccccc--ccccceeEEecceeecccccccCCCCCCcccccceeecce-eEEecceeeeecccccccccc
Confidence                238999999875  4689999999999999999999999999999999999665 99999962             


Q ss_pred             -CCCCCCcEEEEECCCCcEEeccc----CCCCCCCCCccEEEEECCeEEEEeccCCC-------CCcceEEEEEC
Q 010551          214 -HSIFFNDLHVLDLQTNEWSQPEI----KGDLVTGRAGHAGITIDENWYIVGGGDNN-------NGCQETIVLNM  276 (507)
Q Consensus       214 -~~~~~~~i~~~d~~~~~W~~~~~----~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-------~~~~~~~~~d~  276 (507)
                       .=.|++.+-++|+.+..|..+..    ....|.+|++|+++.++.+||+..|.++.       -++.|+|.+|.
T Consensus       288 kEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT  362 (830)
T KOG4152|consen  288 KEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT  362 (830)
T ss_pred             ceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence             01477889999999999998532    12378899999999999999999996543       23567888874

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=259.13  Aligned_cols=191  Identities=20%  Similarity=0.380  Sum_probs=168.9

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ..+|+|||.++.|..++   ++|.+|..++++++++.||++||.++   .++++.||+.+++|..++++           
T Consensus       287 ~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l-----------  349 (480)
T PHA02790        287 NNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSL-----------  349 (480)
T ss_pred             CeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCC-----------
Confidence            35899999999999999   79999999999999999999999753   26799999999999998866           


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~  162 (507)
                           |.+|.+|++++++++||++||....   .+++++|||.+++|+.++   +||.+|.++++++++++||++||.  
T Consensus       350 -----~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv~GG~--  416 (480)
T PHA02790        350 -----LKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFLVGRN--  416 (480)
T ss_pred             -----CCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEEECCc--
Confidence                 4479999999999999999997543   356999999999999987   899999999999999999999983  


Q ss_pred             CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       163 ~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                             +.+||+.+++|+.++   ++|.+|..++++++++ +|||+||.++....+.+.+||+.+++|+..
T Consensus       417 -------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        417 -------AEFYCESSNTWTLID---DPIYPRDNPELIIVDN-KLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             -------eEEecCCCCcEeEcC---CCCCCccccEEEEECC-EEEEECCcCCCcccceEEEEECCCCeEEec
Confidence                   578999999999987   4788999999998855 599999987665568899999999999875

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.80  E-value=1.3e-17  Score=153.43  Aligned_cols=273  Identities=19%  Similarity=0.246  Sum_probs=194.4

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccC--CceeeeccccccCCCccccCCCcCCCCCccceeEEEEC
Q 010551           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG  100 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~  100 (507)
                      +.|.+-..-+.+.+++.+||-=|..+    ..+|.+|+..  ..|+++...+               -.+|.+..+++++
T Consensus        32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~Fp---------------G~~rnqa~~a~~~   92 (381)
T COG3055          32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFP---------------GGARNQAVAAVIG   92 (381)
T ss_pred             CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCC---------------CcccccchheeeC
Confidence            67888777788888999999766332    3578888865  4799998765               3489999999999


Q ss_pred             CEEEEEeccCCCCC----CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCC-------------
Q 010551          101 TKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDR-------------  162 (507)
Q Consensus       101 ~~lyv~GG~~~~~~----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~-------------  162 (507)
                      ++||+|||......    ..+++|+||+.+++|.++.+  ..|....+++++..++ +||++||.+.             
T Consensus        93 ~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a  170 (381)
T COG3055          93 GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAA  170 (381)
T ss_pred             CeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhh
Confidence            99999999864433    57899999999999999987  4577788899999888 9999999751             


Q ss_pred             --------------------CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-CCCCCCcE
Q 010551          163 --------------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDL  221 (507)
Q Consensus       163 --------------------~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i  221 (507)
                                          +..+..++..|++.++.|+.+-.  .+..++++ +++++.++.+.++-|.- ..-++..+
T Consensus       171 ~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~  247 (381)
T COG3055         171 GKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEV  247 (381)
T ss_pred             cccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccC-cceeecCCeEEEEcceecCCccccce
Confidence                                11345679999999999998853  23455666 55666677677777753 34455667


Q ss_pred             EEEECC--CCcEEecccCCCCCCCCC-------ccEEEEECCeEEEEeccC--------------CC-----CCcceEEE
Q 010551          222 HVLDLQ--TNEWSQPEIKGDLVTGRA-------GHAGITIDENWYIVGGGD--------------NN-----NGCQETIV  273 (507)
Q Consensus       222 ~~~d~~--~~~W~~~~~~~~~p~~r~-------~~~~~~~~~~l~v~GG~~--------------~~-----~~~~~~~~  273 (507)
                      +++++.  ..+|..+.   +.|.+..       ++-.-..++.++|.||.+              .+     ...+++|+
T Consensus       248 k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~  324 (381)
T COG3055         248 KQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYI  324 (381)
T ss_pred             eEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEE
Confidence            777765  45798873   3443322       222334467888998853              11     12457888


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC--CCcCceEEEEECCC
Q 010551          274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRLKP  332 (507)
Q Consensus       274 ~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~~~~  332 (507)
                      ||  .+.|+.+..+|...      ..-++  +..++.++++||.+  +...+.|+.+....
T Consensus       325 ~d--~g~Wk~~GeLp~~l------~YG~s--~~~nn~vl~IGGE~~~Gka~~~v~~l~~~g  375 (381)
T COG3055         325 FD--NGSWKIVGELPQGL------AYGVS--LSYNNKVLLIGGETSGGKATTRVYSLSWDG  375 (381)
T ss_pred             Ec--CCceeeecccCCCc------cceEE--EecCCcEEEEccccCCCeeeeeEEEEEEcC
Confidence            88  89999998887531      11122  22244688899976  45677887776543

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.79  E-value=1.6e-17  Score=152.73  Aligned_cols=245  Identities=20%  Similarity=0.317  Sum_probs=182.0

Q ss_pred             CCeEeeCCC--CceEEeecCCCCCCccccceEEEECCEEEEEcCCCC-----CccCCceEEEEccCCceeeeccccccCC
Q 010551            4 GSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-----GRFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         4 ~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~-----~~~~~~~~~~d~~~~~W~~~~~~~~~~~   76 (507)
                      ..|.+|+..  ..|+.+..  .+-.+|.+..+++++++||+|||...     ....+++|.|||.+++|.++.+..    
T Consensus        59 afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s----  132 (381)
T COG3055          59 AFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS----  132 (381)
T ss_pred             cceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc----
Confidence            356677764  59999996  56678999999999999999999543     355789999999999999998765    


Q ss_pred             CccccCCCcCCCCCccceeEEEECC-EEEEEeccCCCCC---------------------------------CcceEEEE
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKKSS---------------------------------DSMIVRFI  122 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~---------------------------------~~~~~~~y  122 (507)
                                 |....+++++..++ .||++||.+....                                 ....+..|
T Consensus       133 -----------P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy  201 (381)
T COG3055         133 -----------PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSY  201 (381)
T ss_pred             -----------ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccc
Confidence                       55688999999988 9999999742210                                 24568999


Q ss_pred             ECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECC--CCcEEEeccCCCCCCCCCCc----
Q 010551          123 DLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE--TMTWDAVEVTQTPPAPRYDH----  196 (507)
Q Consensus       123 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~--t~~W~~~~~~~~~p~~r~~~----  196 (507)
                      +|.++.|+....  .+-.++++.+++.-++++.++-|.-.+.-.+..++.++..  ..+|..+..   +|.+.+..    
T Consensus       202 ~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~---lp~~~~~~~eGv  276 (381)
T COG3055         202 DPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD---LPAPIGSNKEGV  276 (381)
T ss_pred             ccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC---CCCCCCCCcccc
Confidence            999999998752  2335667755555577899999987666667778887775  557998864   33332222    


Q ss_pred             --eEEEEcCCEEEEEcCCC-------------------CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551          197 --SAALHANRYLIVFGGCS-------------------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  255 (507)
Q Consensus       197 --~~~~~~~~~l~v~GG~~-------------------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  255 (507)
                        ++.-..++.++|.||..                   .....++||.||  .+.|+.+   +.+|.++++-+++..++.
T Consensus       277 AGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn~  351 (381)
T COG3055         277 AGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNNK  351 (381)
T ss_pred             ceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCCc
Confidence              11223466788888864                   113556899998  8999996   889999999999999999


Q ss_pred             EEEEeccCCCCC-cceEEEEE
Q 010551          256 WYIVGGGDNNNG-CQETIVLN  275 (507)
Q Consensus       256 l~v~GG~~~~~~-~~~~~~~d  275 (507)
                      +|++||-+..+. ..+++.+.
T Consensus       352 vl~IGGE~~~Gka~~~v~~l~  372 (381)
T COG3055         352 VLLIGGETSGGKATTRVYSLS  372 (381)
T ss_pred             EEEEccccCCCeeeeeEEEEE
Confidence            999999765433 44555544

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.74  E-value=2.2e-19  Score=170.39  Aligned_cols=260  Identities=20%  Similarity=0.268  Sum_probs=184.2

Q ss_pred             CceEEeecCC-------CCCCccccceEEEECC--EEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCC
Q 010551           13 DLWVTLPVSG-------ARPSPRYKHAAAVFDQ--KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus        13 ~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      -+|..++...       -.|..|.||.+|...+  .||++||+++-....++|+|+...+.|..+-.-+           
T Consensus       239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-----------  307 (723)
T KOG2437|consen  239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-----------  307 (723)
T ss_pred             ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC-----------
Confidence            4788887543       4577899999998855  9999999999999999999999999999876543           


Q ss_pred             CcCCCCCccceeEEEECC--EEEEEeccCCCCC-----CcceEEEEECCCCcEEEeecC---CCCCCCCcCcEEEEECCE
Q 010551           84 LLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETS---GKVPVTRGGHSVTLVGSR  153 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~  153 (507)
                        ..|..|.+|-+|....  +||+.|-+-+.+.     ..+++|+||.+++.|.-+...   ...|.....|.+++.+.+
T Consensus       308 --~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k  385 (723)
T KOG2437|consen  308 --EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEK  385 (723)
T ss_pred             --CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCc
Confidence              3478999999998865  8999998744332     577899999999999987643   125788899999999887


Q ss_pred             --EEEEcCCCC--CCCccCcEEEEECCCCcEEEeccC----C---CCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcE
Q 010551          154 --LIIFGGEDR--SRKLLNDVHFLDLETMTWDAVEVT----Q---TPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDL  221 (507)
Q Consensus       154 --iy~~GG~~~--~~~~~n~~~~~d~~t~~W~~~~~~----~---~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i  221 (507)
                        ||||||+.-  +...+..+|.||+....|..+...    +   ..-..|.+|++-.. +++.+|+|||.+...-++-.
T Consensus       386 ~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~  465 (723)
T KOG2437|consen  386 HMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLF  465 (723)
T ss_pred             ceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeeh
Confidence              999999843  333567899999999999866431    0   11235677777665 45679999998766656666


Q ss_pred             EEEECCCCcEEeccc---C-CCCCCCCCccEEEEE---CCeEEEEeccCC------CCCcceEEEEECCCCcEEEec
Q 010551          222 HVLDLQTNEWSQPEI---K-GDLVTGRAGHAGITI---DENWYIVGGGDN------NNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       222 ~~~d~~~~~W~~~~~---~-~~~p~~r~~~~~~~~---~~~l~v~GG~~~------~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      +.|++....-..+..   . ..+.+.+....-+..   .+.+.+..|..-      .+..+.+|+|++.++.|.+|.
T Consensus       466 f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~  542 (723)
T KOG2437|consen  466 FSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY  542 (723)
T ss_pred             hcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence            667665433222110   0 111111222111222   346776666532      123577999999999998864

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.58  E-value=2.5e-15  Score=143.15  Aligned_cols=272  Identities=17%  Similarity=0.230  Sum_probs=185.4

Q ss_pred             cCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECC--EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCC
Q 010551           61 RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV  138 (507)
Q Consensus        61 ~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~  138 (507)
                      -+-.|.+++.....      -++...-|..|.||-+|...+  +||++||+++... ..++|.|+...+.|+.+..-+..
T Consensus       237 y~~~W~~i~~~~~~------~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~  309 (723)
T KOG2437|consen  237 YKPRWSQIIPKSTK------GDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEG  309 (723)
T ss_pred             ccccccccCchhhc------ccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCC
Confidence            34578887765411      011124577899999999965  9999999998776 78999999999999998876678


Q ss_pred             CCCCcCcEEEEECC--EEEEEcCCCCC-----CCccCcEEEEECCCCcEEEeccCC---CCCCCCCCceEEEEcCC-EEE
Q 010551          139 PVTRGGHSVTLVGS--RLIIFGGEDRS-----RKLLNDVHFLDLETMTWDAVEVTQ---TPPAPRYDHSAALHANR-YLI  207 (507)
Q Consensus       139 p~~r~~~~~~~~~~--~iy~~GG~~~~-----~~~~n~~~~~d~~t~~W~~~~~~~---~~p~~r~~~~~~~~~~~-~l~  207 (507)
                      |..|.-|-++..-.  ++|+.|-+-+.     .....|+|.||.+++.|.-++...   ..|...+.|.|++..++ .+|
T Consensus       310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iy  389 (723)
T KOG2437|consen  310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIY  389 (723)
T ss_pred             CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEE
Confidence            99999998887655  99999987332     124578999999999999886432   35888999999998653 589


Q ss_pred             EEcCCCCC---CCCCcEEEEECCCCcEEecccC----C---CCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEE
Q 010551          208 VFGGCSHS---IFFNDLHVLDLQTNEWSQPEIK----G---DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       208 v~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~----~---~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d  275 (507)
                      ||||..-.   ..+.-+|.||.....|..+...    +   .....|.+|.+-..  ++.+|++||......++=.+.|+
T Consensus       390 VfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~  469 (723)
T KOG2437|consen  390 VFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYD  469 (723)
T ss_pred             EecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcce
Confidence            99998532   4567799999999999876421    1   11234777776665  56899999977665555445565


Q ss_pred             CCCCcEEEeccCC--CCCCCCCCCCceEEEEEcCceEEEEEccCC-------CCcCceEEEEECCCCCCCCCc
Q 010551          276 MTKLAWSILTSVK--GRNPLASEGLSVCSAIIEGEHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPRPK  339 (507)
Q Consensus       276 ~~~~~W~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~-------~~~~~~~~~~~~~~~~w~~~~  339 (507)
                      +....-..+....  .....|..++..-+..-+..+.|.+.-|+.       ++..+.+|+|++.+++|....
T Consensus       470 I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~  542 (723)
T KOG2437|consen  470 IDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY  542 (723)
T ss_pred             eccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence            5443322221110  110111112221222223345666666654       335788999999999998543

>PF13964 Kelch_6: Kelch motif

Probab=99.21  E-value=3.9e-11  Score=81.78  Aligned_cols=50  Identities=30%  Similarity=0.345  Sum_probs=45.7

Q ss_pred             CccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCC
Q 010551           90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTR  142 (507)
Q Consensus        90 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r  142 (507)
                      ||.+|++++++++|||+||........+++++||+.|++|+.++   +||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence            58999999999999999999886556899999999999999998   888876

>PLN02772 guanylate kinase

Probab=99.18  E-value=1.9e-10  Score=110.84  Aligned_cols=93  Identities=22%  Similarity=0.289  Sum_probs=81.4

Q ss_pred             CCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCC
Q 010551          135 SGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH  214 (507)
Q Consensus       135 ~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~  214 (507)
                      +|..+.++..++++.+++++|+|||.+.....+|.+++||+.+.+|..+...|..|.+|.+|++++++++.|+|+++.+.
T Consensus        18 ~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~   97 (398)
T PLN02772         18 NGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA   97 (398)
T ss_pred             cCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence            34556788999999999999999998876557899999999999999999999999999999999999999999998655


Q ss_pred             CCCCCcEEEEECCCC
Q 010551          215 SIFFNDLHVLDLQTN  229 (507)
Q Consensus       215 ~~~~~~i~~~d~~~~  229 (507)
                      ..  .++|.+.+.|-
T Consensus        98 ~~--~~~w~l~~~t~  110 (398)
T PLN02772         98 PD--DSIWFLEVDTP  110 (398)
T ss_pred             Cc--cceEEEEcCCH
Confidence            43  67999887764

>PF13964 Kelch_6: Kelch motif

Probab=99.12  E-value=1.7e-10  Score=78.62  Aligned_cols=46  Identities=37%  Similarity=0.761  Sum_probs=42.6

Q ss_pred             ccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeecccc
Q 010551           27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET   72 (507)
Q Consensus        27 ~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~   72 (507)
                      ||.+|++++++++|||+||..+ ...++++++||+.+++|+.+++++
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            6999999999999999999887 788999999999999999998764

>PLN02772 guanylate kinase

Probab=99.09  E-value=6.8e-10  Score=107.11  Aligned_cols=88  Identities=22%  Similarity=0.323  Sum_probs=77.1

Q ss_pred             CCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEEC-CEEEEEcCCCCCCCc
Q 010551           88 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVG-SRLIIFGGEDRSRKL  166 (507)
Q Consensus        88 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~iy~~GG~~~~~~~  166 (507)
                      +.++.+|+++++++++|||||.+......+.+++||+.|++|..+...|..|.+|.+|++++++ ++|++|++....+  
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~--   99 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD--   99 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence            4479999999999999999998886646889999999999999999999999999999999995 5999998776543  


Q ss_pred             cCcEEEEECCCC
Q 010551          167 LNDVHFLDLETM  178 (507)
Q Consensus       167 ~n~~~~~d~~t~  178 (507)
                       .++|.+.++|.
T Consensus       100 -~~~w~l~~~t~  110 (398)
T PLN02772        100 -DSIWFLEVDTP  110 (398)
T ss_pred             -cceEEEEcCCH
Confidence             57999888764

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.99  E-value=1.1e-09  Score=74.06  Aligned_cols=48  Identities=42%  Similarity=0.758  Sum_probs=42.5

Q ss_pred             CCEEEEEcCCC-CCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE
Q 010551          151 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH  201 (507)
Q Consensus       151 ~~~iy~~GG~~-~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~  201 (507)
                      +++||||||.+ .....+|++|+||+.+++|+.+   +++|.+|++|++++|
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence            57999999998 4566789999999999999999   468999999999874

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.95  E-value=1.5e-09  Score=72.87  Aligned_cols=44  Identities=30%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             CccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEee
Q 010551           90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME  133 (507)
Q Consensus        90 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~  133 (507)
                      ||.+|++++++++||++||.......++++++||+.+++|+.++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~   44 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP   44 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence            58999999999999999999986667999999999999999998

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.95  E-value=1.9e-09  Score=72.97  Aligned_cols=47  Identities=43%  Similarity=0.730  Sum_probs=42.3

Q ss_pred             CCEEEEEcCCC--CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE
Q 010551          203 NRYLIVFGGCS--HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       203 ~~~l~v~GG~~--~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                      +++||||||.+  ....+|++|+||+.+++|+.+   ++.|.+|++|++++|
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence            46799999998  668889999999999999997   788999999999875

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.95  E-value=1.8e-09  Score=73.06  Aligned_cols=45  Identities=42%  Similarity=0.764  Sum_probs=41.4

Q ss_pred             ccccceEEEECCEEEEEcCC---CCCccCCceEEEEccCCceeeeccc
Q 010551           27 PRYKHAAAVFDQKLYIVGGS---RNGRFLSDVQVFDLRSLAWSNLRLE   71 (507)
Q Consensus        27 ~r~~~~~~~~~~~iyi~GG~---~~~~~~~~~~~~d~~~~~W~~~~~~   71 (507)
                      ||++|++++++++|||+||.   .+....+++++||+.+++|+.++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence            69999999999999999999   5678889999999999999998865

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.92  E-value=1.3e-09  Score=73.25  Aligned_cols=45  Identities=33%  Similarity=0.620  Sum_probs=41.4

Q ss_pred             ccccceEEEECCEEEEEcCCCC-CccCCceEEEEccCCceeeeccc
Q 010551           27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLE   71 (507)
Q Consensus        27 ~r~~~~~~~~~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~   71 (507)
                      ||.+|++++++++||++||... ...++++++||+.+++|+.++++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence            6999999999999999999877 78899999999999999999876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.86  E-value=7.2e-09  Score=70.08  Aligned_cols=46  Identities=33%  Similarity=0.579  Sum_probs=41.1

Q ss_pred             CCcCcEEEEECCEEEEEcCC--CCCCCccCcEEEEECCCCcEEEeccC
Q 010551          141 TRGGHSVTLVGSRLIIFGGE--DRSRKLLNDVHFLDLETMTWDAVEVT  186 (507)
Q Consensus       141 ~r~~~~~~~~~~~iy~~GG~--~~~~~~~n~~~~~d~~t~~W~~~~~~  186 (507)
                      +|.+|++++++++||+|||+  +......+++++||+.+.+|+.++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence            58899999999999999999  55566789999999999999999753

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.85  E-value=2e-07  Score=83.92  Aligned_cols=162  Identities=23%  Similarity=0.385  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCCCc--------EEEeccCCCCCCCCCCceEEEEc---CCEEEEEcCCCCC------
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHS------  215 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~--------W~~~~~~~~~p~~r~~~~~~~~~---~~~l~v~GG~~~~------  215 (507)
                      ..++.||...++...+.+|++.+.+..        .++-...|+.|.+|++|++.++.   ....++|||.+--      
T Consensus        40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT  119 (337)
T PF03089_consen   40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT  119 (337)
T ss_pred             eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence            455669998888888999999876543        45556678999999999998863   3457899997511      


Q ss_pred             --------CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCC--cceEEEEECCCCcEEEec
Q 010551          216 --------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG--CQETIVLNMTKLAWSILT  285 (507)
Q Consensus       216 --------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~d~~~~~W~~v~  285 (507)
                              .+...++.+|+.-+-.+... .+.+....++|.+..-++.+|++||..-...  ...++.+...--    +.
T Consensus       120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLl----lG  194 (337)
T PF03089_consen  120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLL----LG  194 (337)
T ss_pred             hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeec----CC
Confidence                    34456899999888777643 2455667888988888999999999754433  344554431110    00


Q ss_pred             cCCCCCCCCCCCCceEEEEE--cCceEEEEEccCCC
Q 010551          286 SVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYNG  319 (507)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~v~GG~~~  319 (507)
                      .+.........+.+..++++  .+.+..+|+|||..
T Consensus       195 SP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~s  230 (337)
T PF03089_consen  195 SPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQS  230 (337)
T ss_pred             CceeEEEECCCCceEeeeeEeecCCCceEEEecccc
Confidence            00000011122444444433  23467888899864

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.84  E-value=3.6e-09  Score=71.71  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             CccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCC
Q 010551           90 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP  139 (507)
Q Consensus        90 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p  139 (507)
                      ||.+|+++.+ +++|||+||.+......+++|+||+.+++|+++.   ++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence            5999999999 5899999999987666899999999999999995   665

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.80  E-value=1.6e-06  Score=78.17  Aligned_cols=140  Identities=23%  Similarity=0.309  Sum_probs=95.7

Q ss_pred             cCCCCCccceeEEEE-C------CEEEEEeccCCCCCCcceEEEEECCCCc--------EEEeecCCCCCCCCcCcEEEE
Q 010551           85 LEVLPPMSDHCMVKW-G------TKLLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVTRGGHSVTL  149 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~-~------~~lyv~GG~~~~~~~~~~~~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~  149 (507)
                      +..+||..+.+++.+ +      ..-++-||.++.....+++|+....+..        .......|+.|.+|++|++.+
T Consensus        16 SCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~v   95 (337)
T PF03089_consen   16 SCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINV   95 (337)
T ss_pred             cccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEE
Confidence            456677777777777 2      2356779998888788889998776553        333445689999999999877


Q ss_pred             EC----CEEEEEcCCCC-------------CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCC
Q 010551          150 VG----SRLIIFGGEDR-------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  212 (507)
Q Consensus       150 ~~----~~iy~~GG~~~-------------~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~  212 (507)
                      +-    .-.++|||...             --.+...++.+|+..+..+..... .+-.+.++|.+..- ++.+|++||.
T Consensus        96 V~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar-~D~VYilGGH  173 (337)
T PF03089_consen   96 VHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLAR-NDCVYILGGH  173 (337)
T ss_pred             EEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEec-CceEEEEccE
Confidence            62    25789999742             113456789999998887766432 34456677766665 5569999998


Q ss_pred             CCC--CCCCcEEEEEC
Q 010551          213 SHS--IFFNDLHVLDL  226 (507)
Q Consensus       213 ~~~--~~~~~i~~~d~  226 (507)
                      .-.  .....++++..
T Consensus       174 sl~sd~Rpp~l~rlkV  189 (337)
T PF03089_consen  174 SLESDSRPPRLYRLKV  189 (337)
T ss_pred             EccCCCCCCcEEEEEE
Confidence            533  33345666543

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.77  E-value=7.3e-09  Score=70.17  Aligned_cols=43  Identities=42%  Similarity=0.753  Sum_probs=30.1

Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCC-CCCCcEEEEECCCCcEEec
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~i~~~d~~~~~W~~~  234 (507)
                      ||.+|+++.+.++.||||||.+.. ..++++|+||+.+++|+.+
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence            689999999987889999999876 6899999999999999997

>PF13854 Kelch_5: Kelch motif

Probab=98.77  E-value=1.7e-08  Score=65.59  Aligned_cols=40  Identities=45%  Similarity=0.808  Sum_probs=36.0

Q ss_pred             CCCccccceEEEECCEEEEEcCCC--CCccCCceEEEEccCC
Q 010551           24 RPSPRYKHAAAVFDQKLYIVGGSR--NGRFLSDVQVFDLRSL   63 (507)
Q Consensus        24 ~p~~r~~~~~~~~~~~iyi~GG~~--~~~~~~~~~~~d~~~~   63 (507)
                      +|.+|.+|++++++++|||+||..  .+...+++|+||+.++
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            488999999999999999999987  4788899999999763

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.76  E-value=1.2e-06  Score=79.95  Aligned_cols=176  Identities=15%  Similarity=0.142  Sum_probs=111.8

Q ss_pred             EEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCC----CcEEEeccCCCCCCCCC
Q 010551          119 VRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       119 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t----~~W~~~~~~~~~p~~r~  194 (507)
                      -..||+.|++++.+...   -..-++-.+..-++++++.||....   ...+..|++.+    ..|.+...  .+-.+|-
T Consensus        48 s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW  119 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW  119 (243)
T ss_pred             EEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence            56799999999987632   1122222233347899999998552   45688888865    67988764  3788999


Q ss_pred             CceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC------CcEEeccc-CCCCCCCCCccEEEEECCeEEEEeccCCCCC
Q 010551          195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------NEWSQPEI-KGDLVTGRAGHAGITIDENWYIVGGGDNNNG  267 (507)
Q Consensus       195 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~------~~W~~~~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~  267 (507)
                      ..+++...|+.++|+||...     ..+.|-+..      ..|..+.. ....+...+-+....-+++||+++..     
T Consensus       120 YpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-----  189 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-----  189 (243)
T ss_pred             cccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-----
Confidence            99999999999999999872     223333321      12222211 11233444555555568999999763     


Q ss_pred             cceEEEEECCCCcE-EEeccCCCCCCCCCCCCceEEEEEcC--------ceEEEEEcc
Q 010551          268 CQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEG--------EHHLVAFGG  316 (507)
Q Consensus       268 ~~~~~~~d~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~v~GG  316 (507)
                        +..+||..++++ +.++.+|+..  ..+-.+.++++++-        ...|+|+||
T Consensus       190 --~s~i~d~~~n~v~~~lP~lPg~~--R~YP~sgssvmLPl~~~~~~~~~~evlvCGG  243 (243)
T PF07250_consen  190 --GSIIYDYKTNTVVRTLPDLPGGP--RNYPASGSSVMLPLTDTPPNNYTAEVLVCGG  243 (243)
T ss_pred             --CcEEEeCCCCeEEeeCCCCCCCc--eecCCCcceEEecCccCCCCCCCeEEEEeCC
Confidence              456899999987 7888888752  12222222232222        257888887

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13854 Kelch_5: Kelch motif

Probab=98.67  E-value=5.7e-08  Score=63.06  Aligned_cols=41  Identities=39%  Similarity=0.685  Sum_probs=36.7

Q ss_pred             CCCCCcCcEEEEECCEEEEEcCCCC-CCCccCcEEEEECCCC
Q 010551          138 VPVTRGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM  178 (507)
Q Consensus       138 ~p~~r~~~~~~~~~~~iy~~GG~~~-~~~~~n~~~~~d~~t~  178 (507)
                      +|.+|.+|++++++++||+|||... ....+|++|+||+.++
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            4889999999999999999999984 6677999999998763

>smart00612 Kelch Kelch domain

Probab=98.44  E-value=3.4e-07  Score=61.27  Aligned_cols=47  Identities=28%  Similarity=0.445  Sum_probs=40.4

Q ss_pred             EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC
Q 010551          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS  152 (507)
Q Consensus       102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~  152 (507)
                      +||++||.... ...+++++||+.+++|+..+   +||.+|..++++.+++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence            48999998753 34788999999999999987   8999999999888764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.37  E-value=3.1e-05  Score=70.82  Aligned_cols=144  Identities=19%  Similarity=0.212  Sum_probs=92.3

Q ss_pred             ceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCC----CcE
Q 010551           54 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET----NLC  129 (507)
Q Consensus        54 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t----~~W  129 (507)
                      .-..||+.+++++.+......               -+++++ ..-++.+++.||....   ...+-.|++.+    ..|
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~---------------FCSgg~-~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w  107 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDT---------------FCSGGA-FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDW  107 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCC---------------cccCcC-CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCc
Confidence            356899999999998765432               344443 3447899999998663   34577788765    678


Q ss_pred             EEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCC-----CcEEEeccCC-CCCCCCCCceEEEEc
Q 010551          130 GVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET-----MTWDAVEVTQ-TPPAPRYDHSAALHA  202 (507)
Q Consensus       130 ~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t-----~~W~~~~~~~-~~p~~r~~~~~~~~~  202 (507)
                      .....  .|-.+|...+++.+ +++++|+||....     ..+.+....     ..|.-+..+. ..+..-+-+ +.+..
T Consensus       108 ~e~~~--~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~llP  179 (243)
T PF07250_consen  108 TESPN--DMQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLLP  179 (243)
T ss_pred             eECcc--cccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCce-EEEcC
Confidence            87653  48889999888877 5699999998732     122222211     1232222111 122222223 33445


Q ss_pred             CCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       203 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      ++.||+|+..       +-.+||..++++
T Consensus       180 dG~lFi~an~-------~s~i~d~~~n~v  201 (243)
T PF07250_consen  180 DGNLFIFANR-------GSIIYDYKTNTV  201 (243)
T ss_pred             CCCEEEEEcC-------CcEEEeCCCCeE
Confidence            6779999884       567889999987

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00612 Kelch Kelch domain

Probab=98.35  E-value=8.1e-07  Score=59.37  Aligned_cols=47  Identities=28%  Similarity=0.462  Sum_probs=40.7

Q ss_pred             EEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECC
Q 010551          205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  254 (507)
Q Consensus       205 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  254 (507)
                      +|||+||.......+++++||+.+++|+.+   .++|.+|..|+++++++
T Consensus         1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPL---PSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCceeeeEEEECCCCCeEccC---CCCCCccccceEEEeCC
Confidence            389999987767789999999999999986   57889999999888754

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.32  E-value=0.00021  Score=66.11  Aligned_cols=199  Identities=15%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCcc---ccc-eEEEEC----C-EEEEEcCCCCCccCCceEEEEccCCceeeeccccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPR---YKH-AAAVFD----Q-KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r---~~~-~~~~~~----~-~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~   73 (507)
                      ....+.||.+.+|..+|.   ++.++   ..+ ...-.+    . +|..+...........+.+|+..++.|+.+.....
T Consensus        14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~   90 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPP   90 (230)
T ss_pred             CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCC
Confidence            356789999999999984   22221   111 111111    1 34444332112234578999999999999873221


Q ss_pred             cCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEE-eecCCCCCCCCc----CcEEE
Q 010551           74 LDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVTRG----GHSVT  148 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r~----~~~~~  148 (507)
                                    .... ....+.+++.||.+........ ...+..||+.+.+|.. ++    +|..+.    ...++
T Consensus        91 --------------~~~~-~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~  150 (230)
T TIGR01640        91 --------------HHPL-KSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLI  150 (230)
T ss_pred             --------------Cccc-cCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee----cCccccccccceEEE
Confidence                          1111 1226778999999875432211 2269999999999995 53    343322    34566


Q ss_pred             EECCEEEEEcCCCCCCCccCcEEEEE-CCCCcEEEeccCCCCCCCCC---CceEEEEcCCEEEEEcCCCCCCCCCcEEEE
Q 010551          149 LVGSRLIIFGGEDRSRKLLNDVHFLD-LETMTWDAVEVTQTPPAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       149 ~~~~~iy~~GG~~~~~~~~n~~~~~d-~~t~~W~~~~~~~~~p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~  224 (507)
                      ..+++|.++.......  .-++|+++ -....|++.-.....+.+..   .......+++.|++.....   ...-+..|
T Consensus       151 ~~~G~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y  225 (230)
T TIGR01640       151 NYKGKLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYY  225 (230)
T ss_pred             EECCEEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEE
Confidence            7788887776543211  24677775 44567987654321111211   1123344556676655421   01138888


Q ss_pred             ECCCC
Q 010551          225 DLQTN  229 (507)
Q Consensus       225 d~~~~  229 (507)
                      |+.++
T Consensus       226 ~~~~~  230 (230)
T TIGR01640       226 NVGEN  230 (230)
T ss_pred             eccCC
Confidence            88764

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.24  E-value=0.00042  Score=64.11  Aligned_cols=203  Identities=12%  Similarity=0.101  Sum_probs=109.0

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCc-EEEEEC----C-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGH-SVTLVG----S-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~~----~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                      .+.++||.|+.|..++....++.....+ ....++    . +++.+...... .....+.+|+..++.|+.+...  ++.
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~--~~~   91 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECS--PPH   91 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccC--CCC
Confidence            5899999999999986321100001111 111121    2 56655443211 1245789999999999998742  222


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccCCCCCCCC----CccEEEEECCeEEEEeccCCCC
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGDNNN  266 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~~~~  266 (507)
                      .......+.+ ++.+|-+...........|..||+.+.+|.. +.    .|..+    ....++.++++|.++...... 
T Consensus        92 ~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-  165 (230)
T TIGR01640        92 HPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKKDT-  165 (230)
T ss_pred             ccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecCCC-
Confidence            1222224445 5556666533221111269999999999995 42    23222    234566778888887653221 


Q ss_pred             CcceEEEEE-CCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          267 GCQETIVLN-MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       267 ~~~~~~~~d-~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      ..-++|+++ .....|+++-.++...............+++++..++++....   ..-+..||+.+
T Consensus       166 ~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~  229 (230)
T TIGR01640       166 NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGE  229 (230)
T ss_pred             CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccC
Confidence            235789886 4456799876555321111111122344555555555554211   11377777754

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.83  E-value=0.033  Score=56.10  Aligned_cols=240  Identities=12%  Similarity=0.087  Sum_probs=127.3

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEecc
Q 010551           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH  109 (507)
Q Consensus        32 ~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~  109 (507)
                      +.++.++.||+.+..      ..++.||..+++  |+.-......        -.....+++...+.+..++.||+.+. 
T Consensus        64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~v~v~~~-  128 (394)
T PRK11138         64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDG--------WFSKNKSALLSGGVTVAGGKVYIGSE-  128 (394)
T ss_pred             ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCccc--------ccccccccccccccEEECCEEEEEcC-
Confidence            446679999998752      368999998775  8653321100        00001122334456677888887532 


Q ss_pred             CCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEecc
Q 010551          110 YKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEV  185 (507)
Q Consensus       110 ~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~  185 (507)
                            ...++.+|..|++  |+....     .. ...+.++.++.+|+..+       .+.++.||+.+++  |+....
T Consensus       129 ------~g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        129 ------KGQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             ------CCEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCC
Confidence                  2349999998885  875431     11 11223455778777433       2359999998876  876532


Q ss_pred             CCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCC--CCCCCC---CccEEEEECCeEEE
Q 010551          186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWYI  258 (507)
Q Consensus       186 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~v  258 (507)
                      . +....+...+-++. ++.+|+..+ +     ..++.+|+.+++  |+.....+  .....|   ...+-++.++.+|+
T Consensus       190 ~-~~~~~~~~~sP~v~-~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~  261 (394)
T PRK11138        190 V-PSLTLRGESAPATA-FGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA  261 (394)
T ss_pred             C-CcccccCCCCCEEE-CCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence            1 11111222222333 454555332 2     358888988764  76531110  000001   11233455788887


Q ss_pred             EeccCCCCCcceEEEEECCCCc--EEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC--C
Q 010551          259 VGGGDNNNGCQETIVLNMTKLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR--D  334 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~--~  334 (507)
                      .+. +     ..++.+|+.+..  |+.-  ....         ... .+. ++.||+...     ...++.+|+.+.  .
T Consensus       262 ~~~-~-----g~l~ald~~tG~~~W~~~--~~~~---------~~~-~~~-~~~vy~~~~-----~g~l~ald~~tG~~~  317 (394)
T PRK11138        262 LAY-N-----GNLVALDLRSGQIVWKRE--YGSV---------NDF-AVD-GGRIYLVDQ-----NDRVYALDTRGGVEL  317 (394)
T ss_pred             EEc-C-----CeEEEEECCCCCEEEeec--CCCc---------cCc-EEE-CCEEEEEcC-----CCeEEEEECCCCcEE
Confidence            642 1     258899988764  8752  1110         011 222 236776542     356888888654  3


Q ss_pred             CCC
Q 010551          335 IPR  337 (507)
Q Consensus       335 w~~  337 (507)
                      |..
T Consensus       318 W~~  320 (394)
T PRK11138        318 WSQ  320 (394)
T ss_pred             Ecc
Confidence            544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.73  E-value=0.038  Score=51.11  Aligned_cols=212  Identities=17%  Similarity=0.174  Sum_probs=120.5

Q ss_pred             CCCeEeeCCCC--ceEEeecCCCCCCccccce--EEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCC
Q 010551            3 SGSWHLELPYD--LWVTLPVSGARPSPRYKHA--AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~--~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~   76 (507)
                      ..+.++|+.+.  .|..-..  +   +..+..  .+..++.+|+..+      ...++.||+.+++  |+.-...     
T Consensus         3 g~l~~~d~~tG~~~W~~~~~--~---~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~-----   66 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLG--P---GIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG-----   66 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECS--S---SCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS-----
T ss_pred             CEEEEEECCCCCEEEEEECC--C---CCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc-----
Confidence            34567888665  6776331  1   122222  3346889998843      4579999998885  6554311     


Q ss_pred             CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEE-eecCCCCCC-CCcCcEEEEECC
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGV-METSGKVPV-TRGGHSVTLVGS  152 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~-~~~~g~~p~-~r~~~~~~~~~~  152 (507)
                                    ......+..++.+|+..+       ...++.+|..++.  |+. ...  ..+. .......+..++
T Consensus        67 --------------~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~  123 (238)
T PF13360_consen   67 --------------PISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGD  123 (238)
T ss_dssp             --------------CGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETT
T ss_pred             --------------cccceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecC
Confidence                          222224777899988863       2269999988885  884 432  1122 223334444567


Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCC----CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEEC
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAP----RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL  226 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~----r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~  226 (507)
                      .+|+...       ...++.+|+.+++  |......+....+    ....+..++.++.+|+..+.+      .+..+|.
T Consensus       124 ~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~  190 (238)
T PF13360_consen  124 RLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDL  190 (238)
T ss_dssp             EEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEET
T ss_pred             EEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEEC
Confidence            7766554       3469999998875  7765421110000    001133344556788876643      2666799


Q ss_pred             CCCc--EEecccCCCCCCCCCccE-EEEECCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          227 QTNE--WSQPEIKGDLVTGRAGHA-GITIDENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       227 ~~~~--W~~~~~~~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .++.  |+.. ...       ..+ ....++.+|+.. .     ...++.+|++++.
T Consensus       191 ~tg~~~w~~~-~~~-------~~~~~~~~~~~l~~~~-~-----~~~l~~~d~~tG~  233 (238)
T PF13360_consen  191 ATGEKLWSKP-ISG-------IYSLPSVDGGTLYVTS-S-----DGRLYALDLKTGK  233 (238)
T ss_dssp             TTTEEEEEEC-SS--------ECECEECCCTEEEEEE-T-----TTEEEEEETTTTE
T ss_pred             CCCCEEEEec-CCC-------ccCCceeeCCEEEEEe-C-----CCEEEEEECCCCC
Confidence            9987  8543 111       112 334456666664 2     2468999998874

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.64  E-value=0.09  Score=52.92  Aligned_cols=211  Identities=14%  Similarity=0.108  Sum_probs=115.8

Q ss_pred             CCeEeeCCCC--ceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCcc
Q 010551            4 GSWHLELPYD--LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKT   79 (507)
Q Consensus         4 ~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~   79 (507)
                      .++++|..+.  .|+.-.. ++     ...+.++.++.||+..+      ...++.||+.+++  |+.-...+.      
T Consensus       131 ~l~ald~~tG~~~W~~~~~-~~-----~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~------  192 (394)
T PRK11138        131 QVYALNAEDGEVAWQTKVA-GE-----ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPS------  192 (394)
T ss_pred             EEEEEECCCCCCcccccCC-Cc-----eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCc------
Confidence            4678887654  7875431 11     12233455788887544      2369999998876  765332110      


Q ss_pred             ccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeec--CCCCCCCC---cCcEEEEECC
Q 010551           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMET--SGKVPVTR---GGHSVTLVGS  152 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~--~g~~p~~r---~~~~~~~~~~  152 (507)
                              ...+...+-+..++.+|+..+       ...++.+|+.+++  |+....  .+.....+   ...+-+..++
T Consensus       193 --------~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~  257 (394)
T PRK11138        193 --------LTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG  257 (394)
T ss_pred             --------ccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC
Confidence                    011222233445676666433       2248888988875  865321  11100001   1123345688


Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      .+|+.+. +      ..++.+|+.+++  |+....  .   .   ... .+.++.+|+....      ..++.+|+.+++
T Consensus       258 ~vy~~~~-~------g~l~ald~~tG~~~W~~~~~--~---~---~~~-~~~~~~vy~~~~~------g~l~ald~~tG~  315 (394)
T PRK11138        258 VVYALAY-N------GNLVALDLRSGQIVWKREYG--S---V---NDF-AVDGGRIYLVDQN------DRVYALDTRGGV  315 (394)
T ss_pred             EEEEEEc-C------CeEEEEECCCCCEEEeecCC--C---c---cCc-EEECCEEEEEcCC------CeEEEEECCCCc
Confidence            8887553 1      359999998875  875421  1   1   112 3346668886532      369999998874


Q ss_pred             --EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          231 --WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       231 --W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                        |+...     ...+...+.++.++.+|+... +     ..++.+|..++.
T Consensus       316 ~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~-~-----G~l~~ld~~tG~  356 (394)
T PRK11138        316 ELWSQSD-----LLHRLLTAPVLYNGYLVVGDS-E-----GYLHWINREDGR  356 (394)
T ss_pred             EEEcccc-----cCCCcccCCEEECCEEEEEeC-C-----CEEEEEECCCCC
Confidence              76531     112222334556788876532 1     147888988775

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.36  E-value=0.2  Score=50.09  Aligned_cols=183  Identities=15%  Similarity=0.112  Sum_probs=96.1

Q ss_pred             EECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCC
Q 010551           35 VFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  112 (507)
Q Consensus        35 ~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~  112 (507)
                      +.++.+|+..+      ...++.+|+.++.  |+......              ....+...+.+..++.+| +|..   
T Consensus       143 v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~--------------~~~~~~~~sp~~~~~~v~-~~~~---  198 (377)
T TIGR03300       143 VANGLVVVRTN------DGRLTALDAATGERLWTYSRVTP--------------ALTLRGSASPVIADGGVL-VGFA---  198 (377)
T ss_pred             EECCEEEEECC------CCeEEEEEcCCCceeeEEccCCC--------------ceeecCCCCCEEECCEEE-EECC---
Confidence            34566665432      2358889988764  65432211              001122234455566554 4432   


Q ss_pred             CCCcceEEEEECCCCc--EEEeecCCCCCCCC--------cCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--E
Q 010551          113 SSDSMIVRFIDLETNL--CGVMETSGKVPVTR--------GGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--W  180 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r--------~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W  180 (507)
                         ...++.+|+.+++  |+...   ..|.+.        ...+.+..++.+|+.+.       ...+++||+.+++  |
T Consensus       199 ---~g~v~ald~~tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W  265 (377)
T TIGR03300       199 ---GGKLVALDLQTGQPLWEQRV---ALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLW  265 (377)
T ss_pred             ---CCEEEEEEccCCCEeeeecc---ccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEE
Confidence               1248899998874  76432   111111        11223445677777443       2359999998764  7


Q ss_pred             EEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCCCCccEEEEECCeEEE
Q 010551          181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       181 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      ..-..         ..+...+.++++|+....      ..++.+|..++.  |+....     ..+...+.++.++.+|+
T Consensus       266 ~~~~~---------~~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~  325 (377)
T TIGR03300       266 KRDAS---------SYQGPAVDDNRLYVTDAD------GVVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVV  325 (377)
T ss_pred             eeccC---------CccCceEeCCEEEEECCC------CeEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEE
Confidence            65311         111223446668875421      369999998764  765211     11222233445677766


Q ss_pred             EeccCCCCCcceEEEEECCCCc
Q 010551          259 VGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .. .+     ..++.+|..+.+
T Consensus       326 ~~-~~-----G~l~~~d~~tG~  341 (377)
T TIGR03300       326 GD-FE-----GYLHWLSREDGS  341 (377)
T ss_pred             Ee-CC-----CEEEEEECCCCC
Confidence            42 22     258888987664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.27  E-value=0.21  Score=51.85  Aligned_cols=131  Identities=15%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             ccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEEC-CEEEE
Q 010551           29 YKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLI  105 (507)
Q Consensus        29 ~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~lyv  105 (507)
                      ...+.++.++.||+....      ..++.+|..+++  |+.-......          ...+ +.....++..+ +.||+
T Consensus        53 ~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~----------~~~~-~~~~~g~~~~~~~~V~v  115 (488)
T cd00216          53 QEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPAD----------RGCC-DVVNRGVAYWDPRKVFF  115 (488)
T ss_pred             cccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCcc----------cccc-ccccCCcEEccCCeEEE
Confidence            334456679999987642      469999998775  8764322100          0000 11122334446 77776


Q ss_pred             EeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCC---CccCcEEEEECCCCc-
Q 010551          106 LGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMT-  179 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~---~~~n~~~~~d~~t~~-  179 (507)
                      ...       ...++.+|..|++  |+.-......+......+.++.++.+| +|..+...   .....++.||..+++ 
T Consensus       116 ~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         116 GTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             ecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCcEEEEEECCCCce
Confidence            432       2358999998885  775431100000001223344455555 44332211   224579999998775 


Q ss_pred             -EEEec
Q 010551          180 -WDAVE  184 (507)
Q Consensus       180 -W~~~~  184 (507)
                       |..-.
T Consensus       188 ~W~~~~  193 (488)
T cd00216         188 LWRFYT  193 (488)
T ss_pred             eeEeec
Confidence             87543

The alignment model contains an 8-bladed beta-propeller.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.01  E-value=0.0048  Score=65.51  Aligned_cols=102  Identities=19%  Similarity=0.299  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE  470 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e  470 (507)
                      ...|..+.+.++..++..+...++|+.++..+...-.....+|++.+.++++++.++..|.+.   .++..+.++.+||+
T Consensus       420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a---Rq~DKq~l~~LEkr  496 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA---RQQDKQSLQQLEKR  496 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            455666666777777777778888888877777665666777888888887777776665533   33444555677777


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccccC
Q 010551          471 VQILRQQKSAFEQEMERATSVQTQG  495 (507)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~q~  495 (507)
                      +.+.+++++.+|+||.+++...++.
T Consensus       497 L~eE~~~R~~lEkQL~eErk~r~~e  521 (697)
T PF09726_consen  497 LAEERRQRASLEKQLQEERKARKEE  521 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            7777777777777776665444433

; GO: 0016021 integral to membrane

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.97  E-value=0.24  Score=48.56  Aligned_cols=131  Identities=17%  Similarity=0.131  Sum_probs=80.0

Q ss_pred             eEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccC
Q 010551           32 AAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY  110 (507)
Q Consensus        32 ~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~  110 (507)
                      .++.+ +++|++++..      ....+||+.+..-...|.+..                +.....++.++++||++....
T Consensus        70 ~F~al~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~----------------pk~~pisv~VG~~LY~m~~~~  127 (342)
T PF07893_consen   70 DFFALHGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHS----------------PKRCPISVSVGDKLYAMDRSP  127 (342)
T ss_pred             EEEEecCCeEEEEcCC------CCeEEEECCCCeEeccCCCCC----------------CCcceEEEEeCCeEEEeeccC
Confidence            34444 8999999763      348999999987776655432                344457778899999998875


Q ss_pred             CCCCCc----ceEEEE--E--------CCCCcEEEeecCCCCCCCCcC-------cEEEEE-CCEEEE-EcCCCCCCCcc
Q 010551          111 KKSSDS----MIVRFI--D--------LETNLCGVMETSGKVPVTRGG-------HSVTLV-GSRLII-FGGEDRSRKLL  167 (507)
Q Consensus       111 ~~~~~~----~~~~~y--d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~-~~~iy~-~GG~~~~~~~~  167 (507)
                      ......    ..++.+  +        ..+-.|..++   ++|.....       .+.+++ +..|+| .-|..      
T Consensus       128 ~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------  198 (342)
T PF07893_consen  128 FPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------  198 (342)
T ss_pred             ccccccCccceeEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------
Confidence            443211    145555  3        1222577765   33433222       234445 558887 44432      


Q ss_pred             CcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~  196 (507)
                      ...|.||+.+.+|+.+.   +...|-.+.
T Consensus       199 ~GTysfDt~~~~W~~~G---dW~LPF~G~  224 (342)
T PF07893_consen  199 WGTYSFDTESHEWRKHG---DWMLPFHGQ  224 (342)
T ss_pred             eEEEEEEcCCcceeecc---ceecCcCCc
Confidence            23899999999999983   444444443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.94  E-value=0.32  Score=44.83  Aligned_cols=211  Identities=18%  Similarity=0.219  Sum_probs=114.4

Q ss_pred             ceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCcccee--EEEECCEEEEEeccCCCCCCcceEEEEECCCCc-
Q 010551           54 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-  128 (507)
Q Consensus        54 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-  128 (507)
                      .+..+|+.++.  |+.-...                  +..+..  .+..++.+|+..+       ...++.||..+++ 
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~   58 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGP------------------GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV   58 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSS------------------SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred             EEEEEECCCCCEEEEEECCC------------------CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence            57888987774  7663210                  122222  3447889998842       4459999999986 


Q ss_pred             -EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEE-eccCCCCCCCCCCceEEEEcCC
Q 010551          129 -CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDA-VEVTQTPPAPRYDHSAALHANR  204 (507)
Q Consensus       129 -W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~-~~~~~~~p~~r~~~~~~~~~~~  204 (507)
                       |+.-.     +.+ .....+..++.+|+..+       .+.++.||+.+++  |+. ....  .+..........+.++
T Consensus        59 ~W~~~~-----~~~-~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~~  123 (238)
T PF13360_consen   59 LWRFDL-----PGP-ISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAVDGD  123 (238)
T ss_dssp             EEEEEC-----SSC-GGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEEETT
T ss_pred             EEEeec-----ccc-ccceeeecccccccccc-------eeeeEecccCCcceeeeeccccc--cccccccccCceEecC
Confidence             66543     111 12224677888887763       2369999987765  984 4331  1222222233334466


Q ss_pred             EEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCC-----CCccEEEEECCeEEEEeccCCCCCcceEEEEECC
Q 010551          205 YLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG-----RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       205 ~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~-----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~  277 (507)
                      .+|+...      ...++.+|+.+++  |......+....+     ......++.++.+|+..+..      .+..+|..
T Consensus       124 ~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~  191 (238)
T PF13360_consen  124 RLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLA  191 (238)
T ss_dssp             EEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETT
T ss_pred             EEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECC
Confidence            5665443      2479999999876  6664211111010     01122233356777765422      15666998


Q ss_pred             CCc--EEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          278 KLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       278 ~~~--W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +..  |+. + +..          ........+..||+.. .    ...++.+|+.+.
T Consensus       192 tg~~~w~~-~-~~~----------~~~~~~~~~~~l~~~~-~----~~~l~~~d~~tG  232 (238)
T PF13360_consen  192 TGEKLWSK-P-ISG----------IYSLPSVDGGTLYVTS-S----DGRLYALDLKTG  232 (238)
T ss_dssp             TTEEEEEE-C-SS-----------ECECEECCCTEEEEEE-T----TTEEEEEETTTT
T ss_pred             CCCEEEEe-c-CCC----------ccCCceeeCCEEEEEe-C----CCEEEEEECCCC
Confidence            886  844 2 221          1111223334666654 2    467888988765

...

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.86  E-value=0.45  Score=46.69  Aligned_cols=129  Identities=19%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCcc----CcEEEE-
Q 010551           99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHFL-  173 (507)
Q Consensus        99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~----n~~~~~-  173 (507)
                      .+++|+..+..       ..+.+||+.|..-...+   .++.+...-.++.++++||++..........    ..++.+ 
T Consensus        75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~  144 (342)
T PF07893_consen   75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV  144 (342)
T ss_pred             cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence            48999998664       23889999999876554   4555555567788899999998764332110    144444 


Q ss_pred             -E--------CCCCcEEEeccCCCCCCCCCC-------ceEEEEcCCEEEE-EcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          174 -D--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       174 -d--------~~t~~W~~~~~~~~~p~~r~~-------~~~~~~~~~~l~v-~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                       +        .....|..+++   +|.....       .+-+++++..|+| .-|..     .-.|.||..+.+|+..  
T Consensus       145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~--  214 (342)
T PF07893_consen  145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH--  214 (342)
T ss_pred             cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence             3        22346888754   2322222       2223345666777 33321     2389999999999997  


Q ss_pred             CCCCCCCCCccE
Q 010551          237 KGDLVTGRAGHA  248 (507)
Q Consensus       237 ~~~~p~~r~~~~  248 (507)
                       |++..|-.+.+
T Consensus       215 -GdW~LPF~G~a  225 (342)
T PF07893_consen  215 -GDWMLPFHGQA  225 (342)
T ss_pred             -cceecCcCCcc
Confidence             77766655444

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.79  E-value=0.055  Score=51.07  Aligned_cols=123  Identities=13%  Similarity=0.129  Sum_probs=74.9

Q ss_pred             EEEeccCCCCC-CcceEEEEECCCCcEEEeecCCCCCCCCcC--cEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          104 LILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVTRGG--HSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       104 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~--~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      ||-|-...... ....+..||+.+.+|..+..   .   ..+  .++... ++++|+.|-..........+-.||..+.+
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            44443443332 46789999999999998863   2   222  233334 55777776554333234568999999999


Q ss_pred             EEEeccC--CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          180 WDAVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       180 W~~~~~~--~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      |..+...  ..+|.+....+....+...+++.|....  -..-+..|  +..+|..+..
T Consensus        76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN--GSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             eeecCCcccccCCCcEEEEEeeccCCceEEEeceecC--CCceEEEE--cCCceEeccc
Confidence            9988762  2455554333333344556777776522  22345566  5678998743

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.75  E-value=0.71  Score=46.08  Aligned_cols=194  Identities=18%  Similarity=0.130  Sum_probs=103.0

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEec
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG  108 (507)
                      .+.++.++.||+.+..      ..++.||+.+++  |+.-...                   ....+.++.++.+|+.+.
T Consensus        59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~  113 (377)
T TIGR03300        59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE-------------------RLSGGVGADGGLVFVGTE  113 (377)
T ss_pred             cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC-------------------CcccceEEcCCEEEEEcC
Confidence            4556668888887642      369999998775  7543221                   112233444677776432


Q ss_pred             cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEec
Q 010551          109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  184 (507)
Q Consensus       109 ~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~  184 (507)
                             ...++.||+.+++  |+....     .. ...+.+..++.+|+..+       ...++.+|+.+++  |+...
T Consensus       114 -------~g~l~ald~~tG~~~W~~~~~-----~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       114 -------KGEVIALDAEDGKELWRAKLS-----SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             -------CCEEEEEECCCCcEeeeeccC-----ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEcc
Confidence                   2359999998875  875421     11 11223345677776433       2359999998764  87543


Q ss_pred             cCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCC--CCCCCC---CccEEEEECCeEE
Q 010551          185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWY  257 (507)
Q Consensus       185 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~  257 (507)
                      .. +....+...+.+.. ++.+ ++|..+     ..++.+|+.+++  |+.....+  .....+   ...+.++.++.+|
T Consensus       174 ~~-~~~~~~~~~sp~~~-~~~v-~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy  245 (377)
T TIGR03300       174 VT-PALTLRGSASPVIA-DGGV-LVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY  245 (377)
T ss_pred             CC-CceeecCCCCCEEE-CCEE-EEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence            21 11111222333334 4534 444432     268899988764  76421100  000001   1122334566777


Q ss_pred             EEeccCCCCCcceEEEEECCCCc--EEE
Q 010551          258 IVGGGDNNNGCQETIVLNMTKLA--WSI  283 (507)
Q Consensus       258 v~GG~~~~~~~~~~~~~d~~~~~--W~~  283 (507)
                      +... +     ..++.||+.+..  |..
T Consensus       246 ~~~~-~-----g~l~a~d~~tG~~~W~~  267 (377)
T TIGR03300       246 AVSY-Q-----GRVAALDLRSGRVLWKR  267 (377)
T ss_pred             EEEc-C-----CEEEEEECCCCcEEEee
Confidence            6532 1     258889987763  754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.74  E-value=0.55  Score=44.64  Aligned_cols=186  Identities=21%  Similarity=0.164  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCc
Q 010551           39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  116 (507)
Q Consensus        39 ~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~  116 (507)
                      .+|+.++.+     +.+.+||+.++.-...-...               ..++   +++..  +..+|+.++.      .
T Consensus         2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~---------------~~~~---~l~~~~dg~~l~~~~~~------~   52 (300)
T TIGR03866         2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVG---------------QRPR---GITLSKDGKLLYVCASD------S   52 (300)
T ss_pred             cEEEEecCC-----CEEEEEECCCCceEEEEECC---------------CCCC---ceEECCCCCEEEEEECC------C
Confidence            467776643     36889999877543322111               0111   22222  3456777653      2


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~  194 (507)
                      ..+..||+.+++.....+.+  +.+   ..++.. + +.+|+.++.+      +.+..||+.+..-...-     +....
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~-----~~~~~  116 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEI-----PVGVE  116 (300)
T ss_pred             CeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEe-----eCCCC
Confidence            35889999988765432111  111   122222 3 3566554422      36899999875422111     11111


Q ss_pred             CceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551          195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       195 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~  274 (507)
                      .++++...++.+++++..+.    +.++.||..+..-......+..|    .+....-+++.+++++...    ..+.+|
T Consensus       117 ~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~s~dg~~l~~~~~~~----~~v~i~  184 (300)
T TIGR03866       117 PEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQRP----RFAEFTADGKELWVSSEIG----GTVSVI  184 (300)
T ss_pred             cceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCCCc----cEEEECCCCCEEEEEcCCC----CEEEEE
Confidence            23344444555666655322    24667787765443211111111    1122222445554543222    257889


Q ss_pred             ECCCCcE
Q 010551          275 NMTKLAW  281 (507)
Q Consensus       275 d~~~~~W  281 (507)
                      |+.+...
T Consensus       185 d~~~~~~  191 (300)
T TIGR03866       185 DVATRKV  191 (300)
T ss_pred             EcCccee
Confidence            9887643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.52  E-value=1.1  Score=45.35  Aligned_cols=148  Identities=12%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEe
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  132 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  132 (507)
                      ..++++|+.++.-..+.....                .....+...-++.|++......    ...+|.+|+.++....+
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~----------------~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPG----------------MNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCC----------------CccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEEC
Confidence            579999998876655443211                1111111111345665543222    34599999999887766


Q ss_pred             ecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcC
Q 010551          133 ETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       133 ~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG  211 (507)
                      ...   +...... ....++ +|++......    ...+|.+|+.+..+..+...+     ..........++..+++..
T Consensus       274 ~~~---~~~~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       274 TNG---PGIDTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             CCC---CCCCCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEE
Confidence            421   1111111 111244 5554433222    247999999998888775422     1222333333444555544


Q ss_pred             CCCCCCCCcEEEEECCCCcEEecc
Q 010551          212 CSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       212 ~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      ...  ....++.+|+.++.+..+.
T Consensus       341 ~~~--~~~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       341 REG--GGFNIAVMDLDGGGERVLT  362 (417)
T ss_pred             ccC--CceEEEEEeCCCCCeEEcc
Confidence            332  2347999999887776653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.48  E-value=0.72  Score=42.90  Aligned_cols=200  Identities=17%  Similarity=0.128  Sum_probs=105.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.||+..-     ....++.+|+.++.-..+...                  .  -.+++..  ++.+|+....     
T Consensus        11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~------------------~--~~G~~~~~~~g~l~v~~~~-----   60 (246)
T PF08450_consen   11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP------------------G--PNGMAFDRPDGRLYVADSG-----   60 (246)
T ss_dssp             TTEEEEEET-----TTTEEEEEETTTTEEEEEESS------------------S--EEEEEEECTTSEEEEEETT-----
T ss_pred             CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC------------------C--CceEEEEccCCEEEEEEcC-----
Confidence            577777743     235799999998876654432                  1  2334444  6778877542     


Q ss_pred             CcceEEEEECCCCcEEEeecC--CCCCCCCcCcEEEEECCEEEEEcCCCCCCCcc--CcEEEEECCCCcEEEeccCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETS--GKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLL--NDVHFLDLETMTWDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~--n~~~~~d~~t~~W~~~~~~~~~p  190 (507)
                         .+.++|+.+++++.+...  +..+..+.+-.++.-++.||+---........  ..++++++. .+...+...  + 
T Consensus        61 ---~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~-  133 (246)
T PF08450_consen   61 ---GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L-  133 (246)
T ss_dssp             ---CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E-
T ss_pred             ---ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c-
Confidence               256779999999887642  11133333333344466777642221111112  579999998 666555421  1 


Q ss_pred             CCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCC--CcEEecccCCCCCCCC-CccEEEEE-CCeEEEEeccCCC
Q 010551          191 APRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGR-AGHAGITI-DENWYIVGGGDNN  265 (507)
Q Consensus       191 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r-~~~~~~~~-~~~l~v~GG~~~~  265 (507)
                        ..-.+++... ++.||+.-     ...+.|++|++..  ..+.........+... ..-.+++- +++|||..-    
T Consensus       134 --~~pNGi~~s~dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----  202 (246)
T PF08450_consen  134 --GFPNGIAFSPDGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----  202 (246)
T ss_dssp             --SSEEEEEEETTSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----
T ss_pred             --ccccceEECCcchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----
Confidence              1112344443 44577632     2335699999864  3344322111112211 12234443 568888732    


Q ss_pred             CCcceEEEEECCCCcEEEec
Q 010551          266 NGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       266 ~~~~~~~~~d~~~~~W~~v~  285 (507)
                       ....+++||+....-..+.
T Consensus       203 -~~~~I~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  203 -GGGRIVVFDPDGKLLREIE  221 (246)
T ss_dssp             -TTTEEEEEETTSCEEEEEE
T ss_pred             -CCCEEEEECCCccEEEEEc
Confidence             1236899999955555553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.48  E-value=0.14  Score=52.09  Aligned_cols=17  Identities=35%  Similarity=0.444  Sum_probs=6.7

Q ss_pred             hhhhhhhHHHHHHHHHH
Q 010551          444 RSRCFKLEAQIAELQKM  460 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~  460 (507)
                      +.++.+|+..+..+.++
T Consensus       219 ~~ri~~LEedi~~l~qk  235 (546)
T PF07888_consen  219 RQRIRELEEDIKTLTQK  235 (546)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.46  E-value=0.037  Score=46.48  Aligned_cols=74  Identities=11%  Similarity=0.213  Sum_probs=28.2

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~  484 (507)
                      +...+.+.....+.++..+.+.++.+..++++.++++.+.+..+.+..+.....+.+.+.++.+.++++..+..
T Consensus        22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~   95 (143)
T PF12718_consen   22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK   95 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333334444444444444433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.46  E-value=1.2  Score=45.10  Aligned_cols=196  Identities=10%  Similarity=0.030  Sum_probs=106.6

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      .++|++|+.++.=+.+....                 .........- +.+|++.-...+    ..++|.+|+.++.+++
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             CEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEE
Confidence            38999999888766665321                 1111112222 345655443222    4579999999999988


Q ss_pred             eecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcC
Q 010551          132 METSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG  211 (507)
                      +..   .+..-.......-+.+|++.....+    ...++++|+.++..+.+...+.     .. ....-+++.|++...
T Consensus       272 LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        272 ITN---YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSR  338 (419)
T ss_pred             ccc---CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEc
Confidence            752   2221111111112346766654322    3579999999999887764322     12 223334554544443


Q ss_pred             CCCCC---CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551          212 CSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       212 ~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~  288 (507)
                      .....   ...+++++|+.++.++.+...+     ...+....-+++.+++-...  .....++++++..+.=..++..+
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~~~  411 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPLKV  411 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeecCC
Confidence            32211   2358999999999998875421     11112222345544443222  33456888888776555555433


Q ss_pred             C
Q 010551          289 G  289 (507)
Q Consensus       289 ~  289 (507)
                      +
T Consensus       412 g  412 (419)
T PRK04043        412 G  412 (419)
T ss_pred             C
Confidence            3

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.39  E-value=0.094  Score=49.52  Aligned_cols=113  Identities=17%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             ccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC-CCCcEEEEECCCCcEEecccC--CCCCC
Q 010551          166 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIK--GDLVT  242 (507)
Q Consensus       166 ~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~--~~~p~  242 (507)
                      .++.+-.||+.+.+|..+...   . .-.-..+...+++.+|+.|-..... ....+-.||.++.+|..+...  ...|.
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~---i-~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg   89 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNG---I-SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG   89 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCC---c-eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence            477899999999999988642   1 1112233334577788877654433 455688999999999887541  23454


Q ss_pred             CCCccEEEEEC-CeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          243 GRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       243 ~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      |.........+ +.+++.|..  .....-+..|  +..+|..+..
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             cEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence            43222222222 357776664  2223334455  5678988765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.31  E-value=0.15  Score=49.91  Aligned_cols=156  Identities=17%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      .--|.+.+|.++.   -.+|..|-.++.  .+....-.             -.|.........|....+++|+..     
T Consensus       224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~-------------~fPi~~a~f~p~G~~~i~~s~rrk-----  280 (514)
T KOG2055|consen  224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLE-------------KFPIQKAEFAPNGHSVIFTSGRRK-----  280 (514)
T ss_pred             CCceEEEecCCCc---EEEEEecCccCh--hheeeeec-------------cCccceeeecCCCceEEEecccce-----
Confidence            4568888886643   234555555554  22222100             112222222333444777777543     


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~  196 (507)
                       -+|.||+.+.+-.++.+...++....-...+...+.++++-|..+      -|+.+...|+.|..--   .++.....+
T Consensus       281 -y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~~  350 (514)
T KOG2055|consen  281 -YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSDF  350 (514)
T ss_pred             -EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEeeE
Confidence             399999999999988754444433333333444556667777543      3788888888875332   123233344


Q ss_pred             eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       197 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      +.. -+...|++.||.+      .+|++|+..+...
T Consensus       351 ~fs-Sdsk~l~~~~~~G------eV~v~nl~~~~~~  379 (514)
T KOG2055|consen  351 TFS-SDSKELLASGGTG------EVYVWNLRQNSCL  379 (514)
T ss_pred             EEe-cCCcEEEEEcCCc------eEEEEecCCcceE
Confidence            444 3346788888864      7999999987533

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.29  E-value=1.1  Score=44.26  Aligned_cols=215  Identities=24%  Similarity=0.321  Sum_probs=106.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      +|+|++.|+.     ...|-+||..+..-  +-....           ...|  ...--....++.+++.|+.+.     
T Consensus        79 DG~LlaaGD~-----sG~V~vfD~k~r~i--LR~~~a-----------h~ap--v~~~~f~~~d~t~l~s~sDd~-----  133 (487)
T KOG0310|consen   79 DGRLLAAGDE-----SGHVKVFDMKSRVI--LRQLYA-----------HQAP--VHVTKFSPQDNTMLVSGSDDK-----  133 (487)
T ss_pred             CCeEEEccCC-----cCcEEEeccccHHH--HHHHhh-----------ccCc--eeEEEecccCCeEEEecCCCc-----
Confidence            6788888874     34588999554211  111110           0111  111122345888999887543     


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC-cEEEeccCCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~~~~~~~p~~r~~  195 (507)
                       .+-.+|.++..- .....|.-.--|++ ++...+++|++-||+|+.      +-.||+.+. .|..--.. ..|..   
T Consensus       134 -v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~elnh-g~pVe---  200 (487)
T KOG0310|consen  134 -VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVELNH-GCPVE---  200 (487)
T ss_pred             -eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeEEecC-CCcee---
Confidence             245556666652 33333322222222 233457799999999863      677787666 44322111 12211   


Q ss_pred             ceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc-----EEEEE-CCeEEEEeccCCCCCc
Q 010551          196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-----AGITI-DENWYIVGGGDNNNGC  268 (507)
Q Consensus       196 ~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-----~~~~~-~~~l~v~GG~~~~~~~  268 (507)
                       .++...+ ..|...||       |.+-++|+.++        +..+..+..|     ++... +++-++.||.++.   
T Consensus       201 -~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~---  261 (487)
T KOG0310|consen  201 -SVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH---  261 (487)
T ss_pred             -eEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCCceEeecccccc---
Confidence             2333344 44455555       46667776543        2333333333     22222 3466666665543   


Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC
Q 010551          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                        +-+||+  ..|+.+..+.-+      +..+...+.+++ .-+++|+.+|
T Consensus       262 --VKVfd~--t~~Kvv~s~~~~------~pvLsiavs~dd-~t~viGmsnG  301 (487)
T KOG0310|consen  262 --VKVFDT--TNYKVVHSWKYP------GPVLSIAVSPDD-QTVVIGMSNG  301 (487)
T ss_pred             --eEEEEc--cceEEEEeeecc------cceeeEEecCCC-ceEEEecccc
Confidence              567883  445555444322      222333344443 4556677654

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.12  E-value=0.04  Score=58.71  Aligned_cols=15  Identities=20%  Similarity=0.206  Sum_probs=7.5

Q ss_pred             EEEEccCCceeeecc
Q 010551           56 QVFDLRSLAWSNLRL   70 (507)
Q Consensus        56 ~~~d~~~~~W~~~~~   70 (507)
                      ++|--.+-+|+.++.
T Consensus       130 ~~~~e~~~~~~~~~~  144 (697)
T PF09726_consen  130 FVYVEASVRLKDLKS  144 (697)
T ss_pred             HHHHHHHHhhcccCC
Confidence            444445555555544

; GO: 0016021 integral to membrane

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.07  E-value=2.3  Score=44.50  Aligned_cols=128  Identities=13%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCC--CCCccceeEEEECCEEEEE
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEV--LPPMSDHCMVKWGTKLLIL  106 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~--p~~r~~~~~~~~~~~lyv~  106 (507)
                      .+-++.++.||+...      ...++.+|..+++  |+.-......          ..+  .......+.+..+++||+.
T Consensus        63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~----------~~~~~~~~~~~rg~av~~~~v~v~  126 (527)
T TIGR03075        63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDD----------VIPVMCCDVVNRGVALYDGKVFFG  126 (527)
T ss_pred             cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcc----------cccccccccccccceEECCEEEEE
Confidence            445667899998654      2369999998874  8754422110          000  0011223345667888874


Q ss_pred             eccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCC-CcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EE
Q 010551          107 GGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVT-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WD  181 (507)
Q Consensus       107 GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~  181 (507)
                      ..       ...++.+|..|++  |+.-.  +..... ....+-++.++.||+-.... .......++.||..+++  |+
T Consensus       127 t~-------dg~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       127 TL-------DARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             cC-------CCEEEEEECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEe
Confidence            32       2349999999986  76532  122111 11223345677776643211 11124569999998875  76


Q ss_pred             Eec
Q 010551          182 AVE  184 (507)
Q Consensus       182 ~~~  184 (507)
                      .-.
T Consensus       197 ~~~  199 (527)
T TIGR03075       197 RYT  199 (527)
T ss_pred             ccC
Confidence            554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.07  E-value=0.65  Score=43.23  Aligned_cols=189  Identities=14%  Similarity=0.067  Sum_probs=99.1

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      .+|.+|+....-..+...    .   ..+++..  ++.+|+...       ..+.++|+.++.++.+.....        
T Consensus        23 ~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~--------   80 (246)
T PF08450_consen   23 RIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD--------   80 (246)
T ss_dssp             EEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEET--------
T ss_pred             EEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccC--------
Confidence            356777777766655532    2   3333333  678888764       346777999999988776421        


Q ss_pred             CCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc--ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEE
Q 010551           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIF  157 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~  157 (507)
                         ...+..+..-.++.-++.||+---........  ..++++++. ++.+.+...  +  ...+ .++.- ++ .||+.
T Consensus        81 ---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~--~~pN-Gi~~s~dg~~lyv~  151 (246)
T PF08450_consen   81 ---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L--GFPN-GIAFSPDGKTLYVA  151 (246)
T ss_dssp             ---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E--SSEE-EEEEETTSSEEEEE
T ss_pred             ---CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c--cccc-ceEECCcchheeec
Confidence               01133444445555577877753322222112  569999999 766655421  1  1111 22222 33 66663


Q ss_pred             cCCCCCCCccCcEEEEECCC--CcEEEeccCCCCCCCC-CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          158 GGEDRSRKLLNDVHFLDLET--MTWDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t--~~W~~~~~~~~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      --      ..+.+++|++..  ..+.........+... .--.+++-.++.|||..-     ..+.|++||+.-.....+
T Consensus       152 ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~~~i  220 (246)
T PF08450_consen  152 DS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLLREI  220 (246)
T ss_dssp             ET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEEEEE
T ss_pred             cc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEEEEE
Confidence            22      245699999864  3344332211112121 122445545677888622     124799999985444444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.98  E-value=0.16  Score=45.38  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  458 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~  458 (507)
                      ....+...+...+.......++++..+.+++..++...++..++.++.
T Consensus       103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  103 RIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333334444444444444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.93  E-value=1.6  Score=41.41  Aligned_cols=263  Identities=17%  Similarity=0.125  Sum_probs=119.3

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~   79 (507)
                      |..++++|+.+++-...-..  ...++   +++..  +..+|+.++.     .+.+.+||+.++.....-...       
T Consensus        10 d~~v~~~d~~t~~~~~~~~~--~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~-------   72 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPV--GQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSG-------   72 (300)
T ss_pred             CCEEEEEECCCCceEEEEEC--CCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCC-------
Confidence            45577888887765443321  11122   23322  3457777653     246889999887654321111       


Q ss_pred             ccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE-ECCEEEEE
Q 010551           80 EDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL-VGSRLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~iy~~  157 (507)
                              ..++  ..++.- ++.+|+.++.      ...+.+||+.+.+-....     +......+++. -++.++++
T Consensus        73 --------~~~~--~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~  131 (300)
T TIGR03866        73 --------PDPE--LFALHPNGKILYIANED------DNLVTVIDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVN  131 (300)
T ss_pred             --------CCcc--EEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEe-----eCCCCcceEEECCCCCEEEE
Confidence                    1111  111111 3456666542      235899999886532211     11111122222 24566666


Q ss_pred             cCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-ccc
Q 010551          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEI  236 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~  236 (507)
                      +..+     .+.++.||+.+..-......+.    +. ..+....++..+++++..+    +.+.+||+.+.+... +..
T Consensus       132 ~~~~-----~~~~~~~d~~~~~~~~~~~~~~----~~-~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~~~~~~~  197 (300)
T TIGR03866       132 TSET-----TNMAHFIDTKTYEIVDNVLVDQ----RP-RFAEFTADGKELWVSSEIG----GTVSVIDVATRKVIKKITF  197 (300)
T ss_pred             EecC-----CCeEEEEeCCCCeEEEEEEcCC----Cc-cEEEECCCCCEEEEEcCCC----CEEEEEEcCcceeeeeeee
Confidence            5533     1346677887654332211111    11 1222223333444443222    368899998765422 111


Q ss_pred             C--CCCCCCCCccEEEEE-CC-eEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEE
Q 010551          237 K--GDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV  312 (507)
Q Consensus       237 ~--~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (507)
                      .  +..+.......++.. ++ .+|+..+.+     +.+.++|..+..-...... +       +...+....+.+.+|+
T Consensus       198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~~-~-------~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLDYLLV-G-------QRVWQLAFTPDEKYLL  264 (300)
T ss_pred             cccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEEEEEe-C-------CCcceEEECCCCCEEE
Confidence            1  111111111222222 23 445543322     3578889876543221111 1       1112233344455666


Q ss_pred             EEccCCCCcCceEEEEECCCC
Q 010551          313 AFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       313 v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +..+.    .+.+.++|+...
T Consensus       265 ~~~~~----~~~i~v~d~~~~  281 (300)
T TIGR03866       265 TTNGV----SNDVSVIDVAAL  281 (300)
T ss_pred             EEcCC----CCeEEEEECCCC
Confidence            54443    346888888654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.91  E-value=2.4  Score=43.32  Aligned_cols=192  Identities=7%  Similarity=-0.029  Sum_probs=96.2

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..++++|+.++..+.+.....                 ........- |..|++......    ..++|.+|+.++.-..
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g-----------------~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~  284 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPG-----------------MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTR  284 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCC-----------------cccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEE
Confidence            579999999988776653221                 111111222 345544433222    3469999999988776


Q ss_pred             eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551          132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  210 (507)
                      +..   .+. ........-++ +|++.....+    ...+|++|+.+...+.+...    ..........-+++.|++..
T Consensus       285 Lt~---~~~-~~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~  352 (435)
T PRK05137        285 LTD---SPA-IDTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK  352 (435)
T ss_pred             ccC---CCC-ccCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE
Confidence            642   111 11111222234 4544322211    34799999988877777531    11111111222345454433


Q ss_pred             CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCC-CcceEEEEECCCCcEEEec
Q 010551          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~W~~v~  285 (507)
                      . ...  ...++++|+.+.....+....     ........-+++.+++....... ....+|++|+....-..++
T Consensus       353 ~-~~~--~~~i~~~d~~~~~~~~lt~~~-----~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        353 Q-GGG--QFSIGVMKPDGSGERILTSGF-----LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             c-CCC--ceEEEEEECCCCceEeccCCC-----CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            2 111  247899998776665543211     11111122245555553322221 1257899999887666654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.88  E-value=1.1  Score=41.60  Aligned_cols=202  Identities=15%  Similarity=0.121  Sum_probs=111.1

Q ss_pred             eeEEE-ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEE
Q 010551           94 HCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        94 ~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      -++.. .++.||.--|..+    .+.+..||+.|++-....   ++|....+=.++.++++||..-=.      .+.+++
T Consensus        48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~  114 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFV  114 (264)
T ss_dssp             EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEE
T ss_pred             ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEE
Confidence            34554 5788999888765    456999999999876655   678878888999999999987654      346899


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccC-CCCCCCCCccEEE
Q 010551          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK-GDLVTGRAGHAGI  250 (507)
Q Consensus       173 ~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~-~~~p~~r~~~~~~  250 (507)
                      ||+.+.+  .+..   .+.+.-+-+++ .+++.+++--|.      +.++.+|+.+.+-.. +.+. ...|..+ ---+-
T Consensus       115 yd~~tl~--~~~~---~~y~~EGWGLt-~dg~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE  181 (264)
T PF05096_consen  115 YDPNTLK--KIGT---FPYPGEGWGLT-SDGKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELE  181 (264)
T ss_dssp             EETTTTE--EEEE---EE-SSS--EEE-ECSSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE----EEEEE
T ss_pred             Eccccce--EEEE---EecCCcceEEE-cCCCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCC-cEeEE
Confidence            9998753  3321   33345667777 445668887774      579999998765433 2211 1122211 11233


Q ss_pred             EECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCC-----CC--CCCCceEEEEE-cCceEEEEEccCCCCcC
Q 010551          251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP-----LA--SEGLSVCSAII-EGEHHLVAFGGYNGKYN  322 (507)
Q Consensus       251 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~-----~~--~~~~~~~~~~~-~~~~~l~v~GG~~~~~~  322 (507)
                      .+++.+|.=     --..+.+.+.|+.++.-..+-++.+..+     ..  .....+.-+.. +..+.++|.|=    ..
T Consensus       182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK----~W  252 (264)
T PF05096_consen  182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK----LW  252 (264)
T ss_dssp             EETTEEEEE-----ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET----T-
T ss_pred             EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC----CC
Confidence            344544431     1124568899999997555433321110     00  01222333333 45678888764    34


Q ss_pred             ceEEEEEC
Q 010551          323 NEVFVMRL  330 (507)
Q Consensus       323 ~~~~~~~~  330 (507)
                      ..+|...+
T Consensus       253 p~lyeV~l  260 (264)
T PF05096_consen  253 PKLYEVKL  260 (264)
T ss_dssp             SEEEEEEE
T ss_pred             CceEEEEE
Confidence            55555443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.84  E-value=0.07  Score=51.40  Aligned_cols=8  Identities=38%  Similarity=0.593  Sum_probs=4.1

Q ss_pred             ceeeeecC
Q 010551          498 GVWRWIAG  505 (507)
Q Consensus       498 g~~~~~~~  505 (507)
                      |..|=|+|
T Consensus       148 G~fGTING  155 (314)
T PF04111_consen  148 GPFGTING  155 (314)
T ss_dssp             TTEEEETT
T ss_pred             CCeeeECC
Confidence            45555554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=95.83  E-value=0.26  Score=42.05  Aligned_cols=93  Identities=17%  Similarity=0.284  Sum_probs=59.0

Q ss_pred             HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-HHHHHHHHHHH
Q 010551          398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQ  476 (507)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~le~e~~~~~~  476 (507)
                      ++.+...+.....+...++..++.++.++++.++++...+.....++.++..++..+...++++++.. .++....++..
T Consensus        54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~  133 (151)
T PF11559_consen   54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH  133 (151)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555566777777777777777777777777777766666666666666666666666665 44444555555


Q ss_pred             hHHHHHHHHHHhhc
Q 010551          477 QKSAFEQEMERATS  490 (507)
Q Consensus       477 ~~~~~~~~~~~~~~  490 (507)
                      ++-+.+.|.+.+..
T Consensus       134 e~rkke~E~~kLk~  147 (151)
T PF11559_consen  134 ELRKKEREIEKLKE  147 (151)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55566666655443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.83  E-value=2.6  Score=43.16  Aligned_cols=185  Identities=10%  Similarity=0.025  Sum_probs=93.5

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEe
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  132 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  132 (507)
                      ..++++|+.++.-..+.....                .-.......-++.|++....++    ...+|.+|+.++..+.+
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g----------------~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~l  301 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPG----------------INGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRI  301 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCC----------------CcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEEC
Confidence            579999998877655543211                0011111112445655443222    34699999999988776


Q ss_pred             ecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcC
Q 010551          133 ETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       133 ~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG  211 (507)
                      ...   + .........-++ .|++....++    ...+|.+|+.++++..+...+..    .......-++++|++.+.
T Consensus       302 t~~---~-~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        302 TRH---R-AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ccC---C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEe
Confidence            521   1 111111112234 5555433222    35799999999999887532211    111122223454554432


Q ss_pred             CCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          212 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       212 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                       ...  ...++.+|+.++....+....   ... ..+ ..-+++.+++....+  ....+++++....
T Consensus       370 -~~g--~~~I~~~dl~~g~~~~lt~~~---~d~-~ps-~spdG~~I~~~~~~~--g~~~l~~~~~~G~  427 (448)
T PRK04792        370 -TNG--KFNIARQDLETGAMQVLTSTR---LDE-SPS-VAPNGTMVIYSTTYQ--GKQVLAAVSIDGR  427 (448)
T ss_pred             -cCC--ceEEEEEECCCCCeEEccCCC---CCC-Cce-ECCCCCEEEEEEecC--CceEEEEEECCCC
Confidence             221  246899999998877654211   111 111 223444444433221  2345788887444

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.82  E-value=0.16  Score=51.07  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhcccc--cCCCceee
Q 010551          467 IENEVQILRQQKSAFEQEMERATSVQT--QGSGGVWR  501 (507)
Q Consensus       467 le~e~~~~~~~~~~~~~~~~~~~~~~~--q~~~g~~~  501 (507)
                      |..++..+.+.-.++.++-..+...++  .+.+|.||
T Consensus       170 L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG  206 (475)
T PRK10361        170 LAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG  206 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence            333344443333344444333444454  36789997

>PTZ00421 coronin; Provisional

Probab=95.80  E-value=2.8  Score=43.34  Aligned_cols=62  Identities=16%  Similarity=0.141  Sum_probs=34.7

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +.+++.||.+      ..+.+||+.++.-...- .+ .   .....++.+  ++.+++.|+.+.      .+.+||+.++
T Consensus       138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~~-h---~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg  200 (493)
T PTZ00421        138 MNVLASAGAD------MVVNVWDVERGKAVEVI-KC-H---SDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDG  200 (493)
T ss_pred             CCEEEEEeCC------CEEEEEECCCCeEEEEE-cC-C---CCceEEEEEECCCCEEEEecCCC------EEEEEECCCC
Confidence            4566666643      24888898877532211 00 0   111122222  567777777653      5889999876


Q ss_pred             c
Q 010551          179 T  179 (507)
Q Consensus       179 ~  179 (507)
                      +
T Consensus       201 ~  201 (493)
T PTZ00421        201 T  201 (493)
T ss_pred             c
Confidence            5

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.71  E-value=2.8  Score=42.71  Aligned_cols=189  Identities=10%  Similarity=0.033  Sum_probs=96.7

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..++++|+.++.-..+....                 .........- +.+|++.....+    ...++++|+.++.-..
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFR-----------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTR  286 (433)
T ss_pred             cEEEEEECCCCCEEEeccCC-----------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEE
Confidence            56999999888766654321                 1111111122 345554432222    2469999999988766


Q ss_pred             eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEE-EcCCEEEEE
Q 010551          132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~  209 (507)
                      +...   +. ........-++ +|++.....+    ...+|.+|+.++....+...+     ........ -++++|++.
T Consensus       287 lt~~---~~-~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        287 LTNH---FG-IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMV  353 (433)
T ss_pred             CccC---CC-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEE
Confidence            5421   11 11111112234 4544432221    246999999888888775432     11222222 234555554


Q ss_pred             cCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      .+.++   ...++++|+.++....+.. +.  .  .......-+++.+++....  .....++.+++....=..+.
T Consensus       354 ~~~~~---~~~I~v~d~~~g~~~~Lt~-~~--~--~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l~  419 (433)
T PRK04922        354 HGSGG---QYRIAVMDLSTGSVRTLTP-GS--L--DESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRLV  419 (433)
T ss_pred             ECCCC---ceeEEEEECCCCCeEECCC-CC--C--CCCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEcc
Confidence            44221   1379999999888876532 11  1  1111222345555554332  22356888888665434443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.70  E-value=0.75  Score=46.60  Aligned_cols=255  Identities=14%  Similarity=0.034  Sum_probs=128.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCcccee-EEEE-CCEEEEEeccCCC--
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC-MVKW-GTKLLILGGHYKK--  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~--  112 (507)
                      +++.++++=..++.....+.++|+.++....-..                   ....++ ++-. ++..+++......  
T Consensus       134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTSSEEEEEECSTTTS
T ss_pred             CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCCCEEEEEEeCcccc
Confidence            5566665543334445679999999984432111                   122222 3333 3345444444332  


Q ss_pred             ---CCCcceEEEEECCCCcEE-EeecCCCCCCCCc-CcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEECCCC-----cE
Q 010551          113 ---SSDSMIVRFIDLETNLCG-VMETSGKVPVTRG-GHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETM-----TW  180 (507)
Q Consensus       113 ---~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~-~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~~t~-----~W  180 (507)
                         ......++.+...+..-. .+..  ..+.... ...+..- ++ .|++.-+....   .++++.+|....     .|
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvf--e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~  269 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVF--EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKP  269 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEE--C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEE--eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCc
Confidence               113567899988887654 1221  1222222 2222222 33 44443333221   378999999875     78


Q ss_pred             EEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc---EEecccCCCCCCCCCccEEEEECCeEE
Q 010551          181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWY  257 (507)
Q Consensus       181 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~  257 (507)
                      ..+...     ....+..+...++.+|+.-.  .......|..+++....   |..+-  .+.......-.+...+++|+
T Consensus       270 ~~l~~~-----~~~~~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l--~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  270 KLLSPR-----EDGVEYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVL--IPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             EEEEES-----SSS-EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEE--E--SSSEEEEEEEEETTEEE
T ss_pred             EEEeCC-----CCceEEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEE--cCCCCceeEEEEEEECCEEE
Confidence            888531     11222233344666887655  23334578899988765   66421  11111122334455678887


Q ss_pred             EEeccCCCCCcceEEEEECC-CCcEEEeccCCCCCCCCCCCCceEEE-EEcCceEEEEEccCCCCcCceEEEEECCCCCC
Q 010551          258 IVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       258 v~GG~~~~~~~~~~~~~d~~-~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w  335 (507)
                      +.-=   ......+.++++. +..-..++.+ ..      +...... -..++...|.+.++.  ....+|.||+.+...
T Consensus       341 l~~~---~~~~~~l~v~~~~~~~~~~~~~~p-~~------g~v~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  341 LSYR---ENGSSRLRVYDLDDGKESREIPLP-EA------GSVSGVSGDFDSDELRFSYSSFT--TPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEE---ETTEEEEEEEETT-TEEEEEEESS-SS------SEEEEEES-TT-SEEEEEEEETT--EEEEEEEEETTTTCE
T ss_pred             EEEE---ECCccEEEEEECCCCcEEeeecCC-cc------eEEeccCCCCCCCEEEEEEeCCC--CCCEEEEEECCCCCE
Confidence            7632   2345678999998 4444444322 11      2111111 112245566677755  467899999987754


Q ss_pred             C
Q 010551          336 P  336 (507)
Q Consensus       336 ~  336 (507)
                      .
T Consensus       409 ~  409 (414)
T PF02897_consen  409 T  409 (414)
T ss_dssp             E
T ss_pred             E
Confidence            3

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.68  E-value=0.19  Score=48.98  Aligned_cols=13  Identities=15%  Similarity=0.491  Sum_probs=6.1

Q ss_pred             EEEEECCCC-cEEE
Q 010551          271 TIVLNMTKL-AWSI  283 (507)
Q Consensus       271 ~~~~d~~~~-~W~~  283 (507)
                      +|.+++.+. .|..
T Consensus       269 ~yalel~tqrVWDY  282 (493)
T KOG0804|consen  269 CYALELETQRVWDY  282 (493)
T ss_pred             eEEEeecceeeeec
Confidence            455555443 3544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.63  E-value=0.22  Score=47.84  Aligned_cols=18  Identities=22%  Similarity=0.427  Sum_probs=7.0

Q ss_pred             HHHHHHHhHHHHHHHHHH
Q 010551          470 EVQILRQQKSAFEQEMER  487 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~~  487 (507)
                      .++....+++.++.++.+
T Consensus       240 ~I~~~~~~k~e~~~~I~~  257 (312)
T smart00787      240 KIEDLTNKKSELNTEIAE  257 (312)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333344444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK11637 AmiB activator; Provisional

Probab=95.63  E-value=0.093  Score=53.34  Aligned_cols=73  Identities=19%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      +++++.+..+.+..+.....+..++..++..++.++.+..+++...+.++...+.++.+++.++.++++++..
T Consensus        49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~  121 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA  121 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444433333333444444444444444444444444444444444444444444444444443333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.59  E-value=0.2  Score=48.79  Aligned_cols=9  Identities=22%  Similarity=0.025  Sum_probs=3.3

Q ss_pred             HHHHHHhHH
Q 010551          471 VQILRQQKS  479 (507)
Q Consensus       471 ~~~~~~~~~  479 (507)
                      +++++.+++
T Consensus       253 k~~l~~eI~  261 (325)
T PF08317_consen  253 KQELLAEIA  261 (325)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.56  E-value=3.3  Score=42.43  Aligned_cols=150  Identities=17%  Similarity=0.169  Sum_probs=80.3

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ...+|++|+.++.-+.+.   ..+......+...-+..|++....++    ..+++.+|+.+++...+....    . ..
T Consensus       241 ~~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~-~~  308 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----A-ID  308 (448)
T ss_pred             CcEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----C-Cc
Confidence            346999999998876664   22221111111112345665543322    357999999999887775321    1 11


Q ss_pred             ceEEE-EcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551          196 HSAAL-HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~-~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~  274 (507)
                      ...+. -+++.|++....++   ...+|.+|+.++++..+...+..    .......-+++.+++.+..  .....++++
T Consensus       309 ~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~--~g~~~I~~~  379 (448)
T PRK04792        309 TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRT--NGKFNIARQ  379 (448)
T ss_pred             cceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEec--CCceEEEEE
Confidence            11222 23444554432222   25799999999988876422211    1111122244444443322  223478999


Q ss_pred             ECCCCcEEEecc
Q 010551          275 NMTKLAWSILTS  286 (507)
Q Consensus       275 d~~~~~W~~v~~  286 (507)
                      |+.+...+.+..
T Consensus       380 dl~~g~~~~lt~  391 (448)
T PRK04792        380 DLETGAMQVLTS  391 (448)
T ss_pred             ECCCCCeEEccC
Confidence            999988776643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.42  E-value=1  Score=44.37  Aligned_cols=150  Identities=15%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCc--EEEEECCE-EEEEcCCCCCCCccCcEEEEECC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGH--SVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~--~~~~~~~~-iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      .--|.+.+|.+..    -.+|..|-.++.  .+.   ++-..++-.  ++..-++. .++++|..      .-+|.||+.
T Consensus       224 ~~plllvaG~d~~----lrifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~rr------ky~ysyDle  288 (514)
T KOG2055|consen  224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGRR------KYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCCCc----EEEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEecccc------eEEEEeecc
Confidence            4568888887653    235555555554  222   222222211  12222444 77777764      348999999


Q ss_pred             CCcEEEeccCCCCCCCCCCceE-EEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  255 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  255 (507)
                      +.+-+.+.+....+ .++.+.. +..+++ ++++-|..+     -|+++...|+.|..-   -.++.....++....+..
T Consensus       289 ~ak~~k~~~~~g~e-~~~~e~FeVShd~~-fia~~G~~G-----~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVE-EKSMERFEVSHDSN-FIAIAGNNG-----HIHLLHAKTKELITS---FKIEGVVSDFTFSSDSKE  358 (514)
T ss_pred             ccccccccCCCCcc-cchhheeEecCCCC-eEEEcccCc-----eEEeehhhhhhhhhe---eeeccEEeeEEEecCCcE
Confidence            99999998765555 3334444 344455 666666433     477888888887641   112222222332323446


Q ss_pred             EEEEeccCCCCCcceEEEEECCCCc
Q 010551          256 WYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       256 l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      |+++||..      .+|++|+..+.
T Consensus       359 l~~~~~~G------eV~v~nl~~~~  377 (514)
T KOG2055|consen  359 LLASGGTG------EVYVWNLRQNS  377 (514)
T ss_pred             EEEEcCCc------eEEEEecCCcc
Confidence            67776632      69999998884

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=95.41  E-value=0.091  Score=46.03  Aligned_cols=73  Identities=21%  Similarity=0.369  Sum_probs=46.7

Q ss_pred             HHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHH
Q 010551          407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS  479 (507)
Q Consensus       407 ~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~  479 (507)
                      ..++...+++.++++...+.+++.+++++.+.+++..++++..++.+...++++++...    +|++...++....+
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            34445566667777777777777777777777777777777777766665555544433    55555555544433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.32  E-value=0.62  Score=38.67  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      +..+..+....+..+.....+...-+..+..++.+++....+++....++...++.-..+.+.+++.+.+...+
T Consensus        26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   26 VESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444444444444444444444444444433333444444444333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.25  E-value=0.4  Score=46.07  Aligned_cols=14  Identities=21%  Similarity=0.171  Sum_probs=5.5

Q ss_pred             HHHHHHHHhHHHHH
Q 010551          469 NEVQILRQQKSAFE  482 (507)
Q Consensus       469 ~e~~~~~~~~~~~~  482 (507)
                      .++++++.++...+
T Consensus       246 ~~k~e~~~~I~~ae  259 (312)
T smart00787      246 NKKSELNTEIAEAE  259 (312)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444443333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=0.19  Score=51.08  Aligned_cols=79  Identities=13%  Similarity=0.276  Sum_probs=35.6

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHhHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK-------MLESSQTIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~-------~~~~~~~le~e~~~~~~~~~~~~~  483 (507)
                      +...+...++.++.++.+++.++.+.+.++++++.++..+...+.....       ...++..|++++++.....++|++
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~  502 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER  502 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555554444444444444444444333332222       222333444444444444455555


Q ss_pred             HHHHhh
Q 010551          484 EMERAT  489 (507)
Q Consensus       484 ~~~~~~  489 (507)
                      .+.+..
T Consensus       503 ~l~~l~  508 (652)
T COG2433         503 KLAELR  508 (652)
T ss_pred             HHHHHH
Confidence            554443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.15  E-value=4.3  Score=41.30  Aligned_cols=148  Identities=12%  Similarity=0.101  Sum_probs=77.7

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ..+|++|+.++.-+.+..   .+. ........-++ +|++....++    ..+++++|+.+.....+...   + .. .
T Consensus       223 ~~l~~~~l~~g~~~~l~~---~~g-~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~  289 (430)
T PRK00178        223 PRIFVQNLDTGRREQITN---FEG-LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D  289 (430)
T ss_pred             CEEEEEECCCCCEEEccC---CCC-CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence            469999999998776642   111 11111111233 5554332221    25799999999988776431   1 11 1


Q ss_pred             ceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551          196 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~  274 (507)
                      ...... +++.|++.....+   ...+|.+|+.++.+..+...+    .........-+++.+++.....  ...+++++
T Consensus       290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~--~~~~l~~~  360 (430)
T PRK00178        290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQD--GNFHVAAQ  360 (430)
T ss_pred             CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccC--CceEEEEE
Confidence            112222 3444554432221   247999999998887764211    1111111122333333332221  13469999


Q ss_pred             ECCCCcEEEecc
Q 010551          275 NMTKLAWSILTS  286 (507)
Q Consensus       275 d~~~~~W~~v~~  286 (507)
                      |+.+...+.+..
T Consensus       361 dl~tg~~~~lt~  372 (430)
T PRK00178        361 DLQRGSVRILTD  372 (430)
T ss_pred             ECCCCCEEEccC
Confidence            999988877754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.13  E-value=4.4  Score=41.32  Aligned_cols=188  Identities=14%  Similarity=0.072  Sum_probs=90.4

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~  196 (507)
                      ..++++|+.++....+.   ..+......+...-+.+|++....++    ..++|.+|+.+..-..+...   + .....
T Consensus       226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~-~~~~~  294 (435)
T PRK05137        226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---P-AIDTS  294 (435)
T ss_pred             CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---C-CccCc
Confidence            46999999999887765   22222111111112335554433322    35799999998887766431   1 11111


Q ss_pred             eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEEC
Q 010551          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  276 (507)
Q Consensus       197 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~  276 (507)
                      ....-+++.|++.....+   ...+|++|+.+.....+...    ..........-+++.+++.....  ....++++|+
T Consensus       295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~--~~~~i~~~d~  365 (435)
T PRK05137        295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGG--GQFSIGVMKP  365 (435)
T ss_pred             eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCC--CceEEEEEEC
Confidence            112223444443322211   24799999988777765321    11111111222344333332211  2347889998


Q ss_pred             CCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCc-CceEEEEECCCC
Q 010551          277 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPR  333 (507)
Q Consensus       277 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~  333 (507)
                      .+.....+.... .        .......+++.+|+......+.. ...+|.+++...
T Consensus       366 ~~~~~~~lt~~~-~--------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        366 DGSGERILTSGF-L--------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CCCceEeccCCC-C--------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            777665543211 0        01111223333444333222221 257899988654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.06  E-value=4.4  Score=40.92  Aligned_cols=147  Identities=12%  Similarity=0.086  Sum_probs=78.5

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ..++++|+.++.-..+..   .+..... ....-++ .|++....+.    ..+++.+|+.+.....+.....   ... 
T Consensus       214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~~~-  281 (417)
T TIGR02800       214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---IDT-  281 (417)
T ss_pred             cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---CCC-
Confidence            469999999987666542   2211111 1122233 5655443322    3579999999888777653211   110 


Q ss_pred             ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEE-EECCeEEEEeccCCCCCcceEEEE
Q 010551          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~  274 (507)
                      .....-++++|++.....+   ...+|.+|+.++.+..+...+     ....... .-+++.+++.....  ....++++
T Consensus       282 ~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~  351 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVM  351 (417)
T ss_pred             CEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence            1111123444544433222   247999999988877654221     1111222 22455555544322  33578999


Q ss_pred             ECCCCcEEEec
Q 010551          275 NMTKLAWSILT  285 (507)
Q Consensus       275 d~~~~~W~~v~  285 (507)
                      |+.+..++.+.
T Consensus       352 d~~~~~~~~l~  362 (417)
T TIGR02800       352 DLDGGGERVLT  362 (417)
T ss_pred             eCCCCCeEEcc
Confidence            99987776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.03  E-value=5.1  Score=41.56  Aligned_cols=259  Identities=15%  Similarity=0.060  Sum_probs=114.5

Q ss_pred             CCCCeEeeCCC--CceEEeecCCCCCCccccceEEEECCEEEEEcCCCCC----ccCCceEEEEccCCc--eeeeccccc
Q 010551            2 DSGSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNG----RFLSDVQVFDLRSLA--WSNLRLETE   73 (507)
Q Consensus         2 ~~~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~----~~~~~~~~~d~~~~~--W~~~~~~~~   73 (507)
                      |..++++|..+  -.|..-......+......+.++.++.+|+ |.....    .....++.||..+++  |+.-.....
T Consensus       119 ~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~  197 (488)
T cd00216         119 DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD  197 (488)
T ss_pred             CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence            34567788765  467765421100111123344555666554 432211    123578999998875  765432211


Q ss_pred             cCCCccccCC--CcCCCCCccceeEEE--ECCEEEEEeccCC-----------CCCCcceEEEEECCCCc--EEEeecCC
Q 010551           74 LDADKTEDSG--LLEVLPPMSDHCMVK--WGTKLLILGGHYK-----------KSSDSMIVRFIDLETNL--CGVMETSG  136 (507)
Q Consensus        74 ~~~~~~~~~~--~~~~p~~r~~~~~~~--~~~~lyv~GG~~~-----------~~~~~~~~~~yd~~t~~--W~~~~~~g  136 (507)
                      ..+.+.....  ......+....+.+.  .++.+|+-.|...           .....+.++.+|..|++  |+.-....
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~  277 (488)
T cd00216         198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH  277 (488)
T ss_pred             cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence            0000000000  000000111112222  2456666544321           11134579999999885  87543110


Q ss_pred             CCCCCCcCc--EEEE---ECC---EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEE
Q 010551          137 KVPVTRGGH--SVTL---VGS---RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYL  206 (507)
Q Consensus       137 ~~p~~r~~~--~~~~---~~~---~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l  206 (507)
                      +....+...  .+..   +++   .++++|..+      ..++.||..+++  |+.-.....         +. ...+.+
T Consensus       278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~------G~l~ald~~tG~~~W~~~~~~~~---------~~-~~~~~v  341 (488)
T cd00216         278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN------GFFYVLDRTTGKLISARPEVEQP---------MA-YDPGLV  341 (488)
T ss_pred             CCcccccCCCCeEEeccccCCCeeEEEEEECCC------ceEEEEECCCCcEeeEeEeeccc---------cc-cCCceE
Confidence            100001111  1111   233   245555543      349999998876  875432101         11 112445


Q ss_pred             EEEcCCC------------CCCCCCcEEEEECCCCc--EEecccCCC-C---CCCCCccEEEEECCeEEEEeccCCCCCc
Q 010551          207 IVFGGCS------------HSIFFNDLHVLDLQTNE--WSQPEIKGD-L---VTGRAGHAGITIDENWYIVGGGDNNNGC  268 (507)
Q Consensus       207 ~v~GG~~------------~~~~~~~i~~~d~~~~~--W~~~~~~~~-~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~  268 (507)
                      |+-....            .......++.+|..+++  |+....... .   ..+.....+++.++. +++|..++    
T Consensus       342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~-v~~g~~dG----  416 (488)
T cd00216         342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL-VFAGAADG----  416 (488)
T ss_pred             EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe-EEEECCCC----
Confidence            5422110            01123458899998775  876421000 0   012222233444444 44444322    


Q ss_pred             ceEEEEECCCCc--EEE
Q 010551          269 QETIVLNMTKLA--WSI  283 (507)
Q Consensus       269 ~~~~~~d~~~~~--W~~  283 (507)
                       .++.||..+.+  |+.
T Consensus       417 -~l~ald~~tG~~lW~~  432 (488)
T cd00216         417 -YFRAFDATTGKELWKF  432 (488)
T ss_pred             -eEEEEECCCCceeeEE
Confidence             58899988774  764

The alignment model contains an 8-bladed beta-propeller.

>PTZ00420 coronin; Provisional

Probab=95.02  E-value=5.5  Score=41.85  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      ..+++.||.+      ..+.+||+.++.=.. ..  ..+.   ...++.+  ++.+++.++.+      ..+.+||+.+.
T Consensus       138 ~~iLaSgS~D------gtIrIWDl~tg~~~~-~i--~~~~---~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg  199 (568)
T PTZ00420        138 YYIMCSSGFD------SFVNIWDIENEKRAF-QI--NMPK---KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQ  199 (568)
T ss_pred             CeEEEEEeCC------CeEEEEECCCCcEEE-EE--ecCC---cEEEEEECCCCCEEEEEecC------CEEEEEECCCC
Confidence            3455566643      248888988775211 10  1111   1222323  56677766644      35899999876


Q ss_pred             c
Q 010551          179 T  179 (507)
Q Consensus       179 ~  179 (507)
                      .
T Consensus       200 ~  200 (568)
T PTZ00420        200 E  200 (568)
T ss_pred             c
Confidence            4

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.99  E-value=0.19  Score=50.79  Aligned_cols=69  Identities=10%  Similarity=0.158  Sum_probs=27.9

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~  479 (507)
                      ..+.+.+.+..+..++++.+.|++.++.++..++..++...-..++.++.-++.+++++++..++.+++
T Consensus       288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d  356 (581)
T KOG0995|consen  288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD  356 (581)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444433322211222333333333344444444444443

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=94.97  E-value=2.7  Score=38.38  Aligned_cols=185  Identities=15%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             CCCceEEeecCCCCCC-------ccccceEEEECCEEEEEcCCCCCccCCce--EEEEc-----cCCceeeeccccccCC
Q 010551           11 PYDLWVTLPVSGARPS-------PRYKHAAAVFDQKLYIVGGSRNGRFLSDV--QVFDL-----RSLAWSNLRLETELDA   76 (507)
Q Consensus        11 ~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~iyi~GG~~~~~~~~~~--~~~d~-----~~~~W~~~~~~~~~~~   76 (507)
                      ..+.|..-..+ ..|.       ...-|+.+.+++.=|.+|=.+++.....+  ..|..     ....=+.++..-    
T Consensus       113 ~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey----  187 (367)
T PF12217_consen  113 HDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEY----  187 (367)
T ss_dssp             TTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG----
T ss_pred             ccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhh----
Confidence            45667654322 3444       45678889998888888732222212222  22211     111112222211    


Q ss_pred             CccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLII  156 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~  156 (507)
                                 .......++-..++.||+.--.......-+.+.+-+.....|+.+...  --.-....-.+.+++.||+
T Consensus       188 -----------~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~m  254 (367)
T PF12217_consen  188 -----------ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYM  254 (367)
T ss_dssp             ------------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEE
T ss_pred             -----------ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEE
Confidence                       112334455566999999865444444455677777777889998631  1112233345778999999


Q ss_pred             EcCCCC---------CCCc---cCcEEEE-------ECCCCcEEEecc---CCCCCCCCCCceEEEEcCCEE-EEEcCCC
Q 010551          157 FGGEDR---------SRKL---LNDVHFL-------DLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS  213 (507)
Q Consensus       157 ~GG~~~---------~~~~---~n~~~~~-------d~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~~  213 (507)
                      ||.--.         +..+   ....++.       +++.-.|..+..   .|.....-.+.+.+++.++.| |+|||-+
T Consensus       255 FgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED  334 (367)
T PF12217_consen  255 FGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED  334 (367)
T ss_dssp             EEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred             EeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence            986321         1111   1223332       334445666542   244555566667777888876 7888864

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.94  E-value=2.2  Score=39.65  Aligned_cols=154  Identities=21%  Similarity=0.157  Sum_probs=88.2

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCC
Q 010551           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~  115 (507)
                      .++.||.--|..+   .+.+..||+.++.-......                |..-++-+++.++++||.+-=.      
T Consensus        54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l----------------~~~~FgEGit~~~d~l~qLTWk------  108 (264)
T PF05096_consen   54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPL----------------PPRYFGEGITILGDKLYQLTWK------  108 (264)
T ss_dssp             ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-----------------TTT--EEEEEEETTEEEEEESS------
T ss_pred             CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEEC----------------CccccceeEEEECCEEEEEEec------
Confidence            3567777766543   36789999999876544433                3346788999999999998432      


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEE-EeccCCC-CCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQT-PPAPR  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~-~~~~~~~-~p~~r  193 (507)
                      .....+||+.+.+  .+.   ..+-+..+-.+|..+..||+--|       ++.++.+||.+.+=. .+.++.. .|..+
T Consensus       109 ~~~~f~yd~~tl~--~~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~  176 (264)
T PF05096_consen  109 EGTGFVYDPNTLK--KIG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSN  176 (264)
T ss_dssp             SSEEEEEETTTTE--EEE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred             CCeEEEEccccce--EEE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCC
Confidence            3458999998764  333   22333467777877778888777       456999999876532 2222111 11100


Q ss_pred             CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       194 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                       --=+-.+ +++||.     +--..+.|.+.|+.++....
T Consensus       177 -LNELE~i-~G~IyA-----NVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  177 -LNELEYI-NGKIYA-----NVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             -EEEEEEE-TTEEEE-----EETTSSEEEEEETTT-BEEE
T ss_pred             -cEeEEEE-cCEEEE-----EeCCCCeEEEEeCCCCeEEE
Confidence             0011112 333443     22345679999999997554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.93  E-value=0.25  Score=47.61  Aligned_cols=18  Identities=17%  Similarity=0.250  Sum_probs=6.9

Q ss_pred             HHHHHHHHhHHHHHHHHH
Q 010551          469 NEVQILRQQKSAFEQEME  486 (507)
Q Consensus       469 ~e~~~~~~~~~~~~~~~~  486 (507)
                      ++.+.+..+.+...++++
T Consensus       113 ~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen  113 EERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=0.36  Score=50.35  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFR  416 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~  416 (507)
                      +..|..+|+.+++..++.+++.++++
T Consensus       326 qaELerRRq~leeqqqreree~eqkE  351 (1118)
T KOG1029|consen  326 QAELERRRQALEEQQQREREEVEQKE  351 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666665555555544443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.90  E-value=4.3  Score=39.97  Aligned_cols=278  Identities=16%  Similarity=0.150  Sum_probs=130.3

Q ss_pred             CeEeeCCCCceEEeecCCCCCCccccceEEE--ECCEEEEEcCCCCCccCCceEEEEccC--CceeeeccccccCCCccc
Q 010551            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAV--FDQKLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTE   80 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~iyi~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~~~~~~~~~~   80 (507)
                      +|.||..+.++..+......+.|.   -++.  -++.||+.....  .....+..|....  ++.+.+......      
T Consensus        17 ~~~~d~~~g~l~~~~~~~~~~~Ps---~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~------   85 (345)
T PF10282_consen   17 VFRFDEETGTLTLVQTVAEGENPS---WLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSG------   85 (345)
T ss_dssp             EEEEETTTTEEEEEEEEEESSSEC---CEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEES------
T ss_pred             EEEEcCCCCCceEeeeecCCCCCc---eEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccC------
Confidence            345566899998887421122222   2233  367888886532  1234455555544  677766543211      


Q ss_pred             cCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCCCcceEEEEECCC-CcEEEee----c--CCCCC---CCCcCcEE
Q 010551           81 DSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLET-NLCGVME----T--SGKVP---VTRGGHSV  147 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~----~--~g~~p---~~r~~~~~  147 (507)
                               +. ..+-+.+   +..||+.- +.     ...+.+|++.. +.-....    .  .|+.|   .....|.+
T Consensus        86 ---------g~-~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v  149 (345)
T PF10282_consen   86 ---------GS-SPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV  149 (345)
T ss_dssp             ---------SS-CEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred             ---------CC-CcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence                     12 2222233   45566642 21     23477777766 3333221    1  12221   12233444


Q ss_pred             EEE-C-CEEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCC-CceEEEEcCCEEEEEcCCCCCCCCCcEE
Q 010551          148 TLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLH  222 (507)
Q Consensus       148 ~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~i~  222 (507)
                      ... + +.+|+.. .+     .+.++.|+.....  ....... ..|..-. .|.+..-+++++||..-.+     +.+.
T Consensus       150 ~~~pdg~~v~v~d-lG-----~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~  217 (345)
T PF10282_consen  150 VFSPDGRFVYVPD-LG-----ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVS  217 (345)
T ss_dssp             EE-TTSSEEEEEE-TT-----TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEE
T ss_pred             EECCCCCEEEEEe-cC-----CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEE
Confidence            444 2 4666642 11     4568888887655  5443221 1121111 1222223457899976643     5666


Q ss_pred             EEECC--CCcEEecccCCCCCC---CC-CccEEEEE--CCeEEEEeccCCCCCcceEEEEEC--CCCcEEEeccCCCCCC
Q 010551          223 VLDLQ--TNEWSQPEIKGDLVT---GR-AGHAGITI--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVKGRNP  292 (507)
Q Consensus       223 ~~d~~--~~~W~~~~~~~~~p~---~r-~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~--~~~~W~~v~~~~~~~~  292 (507)
                      .|+..  ++.++.+......|.   .. ..+.+++.  +..||+.-..     .+.+.+|++  .+...+.+...+..  
T Consensus       218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~--  290 (345)
T PF10282_consen  218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG--  290 (345)
T ss_dssp             EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES--
T ss_pred             EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC--
Confidence            66665  677766544333322   22 22233333  3467776332     445677776  44566655443311  


Q ss_pred             CCCCCCc-eEEEEEcCceEEEEEccCCCCcCceEEEE--ECCCCCCC
Q 010551          293 LASEGLS-VCSAIIEGEHHLVAFGGYNGKYNNEVFVM--RLKPRDIP  336 (507)
Q Consensus       293 ~~~~~~~-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~--~~~~~~w~  336 (507)
                          +.. ....+.+.+.+|+|....    .+.+.+|  |..+..+.
T Consensus       291 ----G~~Pr~~~~s~~g~~l~Va~~~----s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  291 ----GKFPRHFAFSPDGRYLYVANQD----SNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             ----SSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEETTTTEEE
T ss_pred             ----CCCccEEEEeCCCCEEEEEecC----CCeEEEEEEeCCCCcEE
Confidence                111 223344556677775443    2345555  44444433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.87  E-value=0.29  Score=47.85  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=13.2

Q ss_pred             ccchhHHHhHHHHHhhHHHhhhhhhhhHHHH
Q 010551          424 STHSELSKELSSVQGQLVAERSRCFKLEAQI  454 (507)
Q Consensus       424 ~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~  454 (507)
                      .+....+.+.+.++..+++++.++.+.+.++
T Consensus       368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel  398 (493)
T KOG0804|consen  368 QESSDLEAEKKIVERKLQQLQTKLKKCQKEL  398 (493)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444443333

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.85  E-value=5.3  Score=40.76  Aligned_cols=146  Identities=12%  Similarity=0.090  Sum_probs=76.8

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~  194 (507)
                      ...++++|+.+++-..+.   ..+.. .......-++ +|++....++    ..+++.+|+.++.-..+...   + . .
T Consensus       227 ~~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~  293 (433)
T PRK04922        227 RSAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-G-I  293 (433)
T ss_pred             CcEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-C-C
Confidence            346999999998877665   22211 1111122233 5655433222    24799999998887665421   1 1 1


Q ss_pred             CceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE-ECC-eEEEEeccCCCCCcceE
Q 010551          195 DHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDE-NWYIVGGGDNNNGCQET  271 (507)
Q Consensus       195 ~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~-~l~v~GG~~~~~~~~~~  271 (507)
                      ........+ +.|++.....+   ...+|.+|+.++....+...+     ........ -++ .+++..+ .  .....+
T Consensus       294 ~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~--~~~~~I  362 (433)
T PRK04922        294 DTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG-S--GGQYRI  362 (433)
T ss_pred             ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC-C--CCceeE
Confidence            112222333 43444332222   247999999888887764222     11112122 233 4444433 1  122378


Q ss_pred             EEEECCCCcEEEec
Q 010551          272 IVLNMTKLAWSILT  285 (507)
Q Consensus       272 ~~~d~~~~~W~~v~  285 (507)
                      +++|+.+.....+.
T Consensus       363 ~v~d~~~g~~~~Lt  376 (433)
T PRK04922        363 AVMDLSTGSVRTLT  376 (433)
T ss_pred             EEEECCCCCeEECC
Confidence            99999888877664

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.84  E-value=0.45  Score=42.42  Aligned_cols=57  Identities=26%  Similarity=0.386  Sum_probs=29.8

Q ss_pred             HhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          409 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       409 ~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      .++..++++.+.+...++.+.+......++.++..++++..++....++.++.++.+
T Consensus        94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   94 QEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555555555555555544444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.82  E-value=0.49  Score=43.11  Aligned_cols=16  Identities=6%  Similarity=0.310  Sum_probs=5.8

Q ss_pred             HHHHHhhccchhHHHh
Q 010551          417 EKIDEVNSTHSELSKE  432 (507)
Q Consensus       417 ~~l~~~~~~~~e~~~e  432 (507)
                      ..+..++.++++++.+
T Consensus        45 ~~~~~~~~e~e~le~q   60 (239)
T COG1579          45 KALEALEIELEDLENQ   60 (239)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.41  Score=48.82  Aligned_cols=83  Identities=20%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhh---hhhhhhHHHHHHHHHHHHhH----H
Q 010551          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER---SRCFKLEAQIAELQKMLESS----Q  465 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~---~~~~~~e~~~~e~~~~~~~~----~  465 (507)
                      ....+...++..++....+++.|+..+++++.++++++.++.+.+.+.....   .+++.++..+..++++|++.    +
T Consensus       419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve  498 (652)
T COG2433         419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE  498 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555666667777777777777777666666655544331   12222334444444443333    2


Q ss_pred             HHHHHHHHHH
Q 010551          466 TIENEVQILR  475 (507)
Q Consensus       466 ~le~e~~~~~  475 (507)
                      +|++++.++.
T Consensus       499 ~L~~~l~~l~  508 (652)
T COG2433         499 ELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHH
Confidence            4555555444

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.81  E-value=0.78  Score=38.12  Aligned_cols=51  Identities=20%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             HhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551          409 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  459 (507)
Q Consensus       409 ~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~  459 (507)
                      +.+...|+.+++.+...+..++.+|..++.+...+...+++.+.++.+++.
T Consensus        51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~  101 (140)
T PF10473_consen   51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES  101 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>cd00094 HX Hemopexin-like repeats

Probab=94.79  E-value=2.8  Score=37.38  Aligned_cols=151  Identities=11%  Similarity=0.087  Sum_probs=76.6

Q ss_pred             EEEECCEEEEEeccCCCCCCcceEEEEECCCCcE--EEeecC-CCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcE
Q 010551           96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLC--GVMETS-GKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDV  170 (507)
Q Consensus        96 ~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~~~~-g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~  170 (507)
                      ++...+.+|+|-|.        .+|+|+......  ..+... +.+|.. .. ++... . +++|+|-|.        ..
T Consensus        12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg~--------~y   73 (194)
T cd00094          12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKGD--------KY   73 (194)
T ss_pred             EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECCC--------EE
Confidence            44456899999763        278887652211  122110 112221 12 22232 3 789999774        36


Q ss_pred             EEEECCCCcEEEeccC---CCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-----ccc-CCCC
Q 010551          171 HFLDLETMTWDAVEVT---QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEI-KGDL  240 (507)
Q Consensus       171 ~~~d~~t~~W~~~~~~---~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~-~~~~  240 (507)
                      |+|+..+..+.-+...   +.++.+..--++.... ++++|+|.|       +..|+||...++...     +.. -..+
T Consensus        74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~  146 (194)
T cd00094          74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGV  146 (194)
T ss_pred             EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCc
Confidence            7777654222111110   1111112122333333 678999988       478899976665431     100 0112


Q ss_pred             CCCCCccEEEEEC-CeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          241 VTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       241 p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      |.  .-.++.... +++|+|-|       +..|.||..+.+
T Consensus       147 p~--~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~  178 (194)
T cd00094         147 PD--KVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE  178 (194)
T ss_pred             CC--CcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence            22  122333344 78999966       367899987765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>cd00094 HX Hemopexin-like repeats

Probab=94.77  E-value=2.9  Score=37.34  Aligned_cols=159  Identities=13%  Similarity=0.079  Sum_probs=74.8

Q ss_pred             EEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCC-CCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEE
Q 010551          146 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHV  223 (507)
Q Consensus       146 ~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~  223 (507)
                      +++...+.+|+|-|.        .+|+++..........+....| .+..--++....+ +.+|+|-|       +..|+
T Consensus        11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------~~yw~   75 (194)
T cd00094          11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------DKYWV   75 (194)
T ss_pred             eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------CEEEE
Confidence            344456899999774        3677765421111111111111 1222233434333 78999977       36888


Q ss_pred             EECCCCcEEecccCC--CCCC-CCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCC--CCCCC
Q 010551          224 LDLQTNEWSQPEIKG--DLVT-GRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN--PLASE  296 (507)
Q Consensus       224 ~d~~~~~W~~~~~~~--~~p~-~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~--~~~~~  296 (507)
                      |+..+.....+....  ..|. +..-.++...  ++++|+|-|       +..|.||...++...  ..|...  ..+-.
T Consensus        76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~--~yP~~i~~~w~g~  146 (194)
T cd00094          76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDP--GYPKLIETDFPGV  146 (194)
T ss_pred             EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccC--CCCcchhhcCCCc
Confidence            887653332221111  1111 1112233333  578999977       357888876554321  011000  00000


Q ss_pred             CCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCC
Q 010551          297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       297 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  334 (507)
                      .....++....+..+|.|-|      +..|+||.....
T Consensus       147 p~~idaa~~~~~~~~yfF~g------~~y~~~d~~~~~  178 (194)
T cd00094         147 PDKVDAAFRWLDGYYYFFKG------DQYWRFDPRSKE  178 (194)
T ss_pred             CCCcceeEEeCCCcEEEEEC------CEEEEEeCccce
Confidence            01111222222246788777      568999986553

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.75  E-value=0.83  Score=40.91  Aligned_cols=39  Identities=26%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             hhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551          402 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       402 ~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      +....+...+..+|.+-|+.++.+.+++++++.......
T Consensus        47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK   85 (201)
T PF13851_consen   47 EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK   85 (201)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555666666666666666666666655544433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.71  E-value=0.63  Score=45.87  Aligned_cols=56  Identities=14%  Similarity=0.280  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhh
Q 010551          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  448 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~  448 (507)
                      +++.+...++..+.....+.++|+.+|.++++++..+++++.+....+.+.+.++.
T Consensus        42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~   97 (420)
T COG4942          42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA   97 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            33333333333444444445555555555555555554444444444444433333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=94.60  E-value=4.8  Score=39.20  Aligned_cols=238  Identities=16%  Similarity=0.064  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCCccCCceEEEEccC-CceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCC
Q 010551           39 KLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD  115 (507)
Q Consensus        39 ~iyi~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~  115 (507)
                      .+|+..+.     ...+.+||..+ ++++.+.....                ....+.++..  ++.||+.+. .     
T Consensus         3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~----------------~~~~~~l~~spd~~~lyv~~~-~-----   55 (330)
T PRK11028          3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDV----------------PGQVQPMVISPDKRHLYVGVR-P-----   55 (330)
T ss_pred             EEEEEcCC-----CCCEEEEEECCCCceeeeeEEec----------------CCCCccEEECCCCCEEEEEEC-C-----
Confidence            46776543     25688888864 56665554321                0111122222  445666443 2     


Q ss_pred             cceEEEEECC-CCcEEEeecCCCCCCC-CcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCC
Q 010551          116 SMIVRFIDLE-TNLCGVMETSGKVPVT-RGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPP  190 (507)
Q Consensus       116 ~~~~~~yd~~-t~~W~~~~~~g~~p~~-r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p  190 (507)
                      ...+..|+.. +++++.+..   .+.+ ...+.+..-++ .+|+. .+.     .+.+.+|++.++.  ...+..   .+
T Consensus        56 ~~~i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~-~~~-----~~~v~v~~~~~~g~~~~~~~~---~~  123 (330)
T PRK11028         56 EFRVLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSA-SYN-----ANCVSVSPLDKDGIPVAPIQI---IE  123 (330)
T ss_pred             CCcEEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEE-EcC-----CCeEEEEEECCCCCCCCceee---cc
Confidence            2346667665 566765542   1211 11122222234 45554 322     2567888876421  111211   11


Q ss_pred             CCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCC-cEEecc-cCCCCCCCCCccEEEEE--CCeEEEEeccCCC
Q 010551          191 APRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQPE-IKGDLVTGRAGHAGITI--DENWYIVGGGDNN  265 (507)
Q Consensus       191 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~~~-~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~  265 (507)
                      ....-|.++... ++++|+..-     ..+.+.+||+.+. ...... .....+.....+.++..  +..+|+...    
T Consensus       124 ~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~----  194 (330)
T PRK11028        124 GLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE----  194 (330)
T ss_pred             CCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec----
Confidence            122234444443 455666432     2247999998763 222100 00011111112223333  236777633    


Q ss_pred             CCcceEEEEECC--CCcEEEe---ccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          266 NGCQETIVLNMT--KLAWSIL---TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       266 ~~~~~~~~~d~~--~~~W~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                       ..+.+.+|++.  +...+.+   ..+|...+.+  ++.......+++.++|+...    ..+.+.+|++.
T Consensus       195 -~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~  258 (330)
T PRK11028        195 -LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT--RWAADIHITPDGRHLYACDR----TASLISVFSVS  258 (330)
T ss_pred             -CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC--ccceeEEECCCCCEEEEecC----CCCeEEEEEEe
Confidence             13456677765  3454433   3332221222  22223334455667887522    23456666653

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=94.59  E-value=0.52  Score=42.28  Aligned_cols=10  Identities=30%  Similarity=0.152  Sum_probs=3.8

Q ss_pred             HhhhhhhhhH
Q 010551          442 AERSRCFKLE  451 (507)
Q Consensus       442 ~~~~~~~~~e  451 (507)
                      ++++.+.+||
T Consensus       109 ql~kyiReLE  118 (333)
T KOG1853|consen  109 QLRKYIRELE  118 (333)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.57  E-value=0.61  Score=44.90  Aligned_cols=52  Identities=15%  Similarity=0.323  Sum_probs=28.2

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      ...+++.++.+.+..+..++.+++..+.+++..++++.++++.++..+..+.
T Consensus        57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555555444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK09039 hypothetical protein; Validated

Probab=94.57  E-value=0.44  Score=46.63  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=18.4

Q ss_pred             HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551          418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      .|.+.+....+...+++..++|++.+++.+..++..+...+++
T Consensus       124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~  166 (343)
T PRK09039        124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR  166 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444433

>PRK09039 hypothetical protein; Validated

Probab=94.56  E-value=0.49  Score=46.31  Aligned_cols=33  Identities=24%  Similarity=0.217  Sum_probs=16.2

Q ss_pred             HHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          433 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       433 l~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      |...+........++..|+++++.+++|+..++
T Consensus       125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le  157 (343)
T PRK09039        125 LDSEKQVSARALAQVELLNQQIAALRRQLAALE  157 (343)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334445555566666666655554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.55  E-value=4.6  Score=38.71  Aligned_cols=217  Identities=13%  Similarity=0.170  Sum_probs=91.8

Q ss_pred             CceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEc-cCCceeeeccccccCCCccccCCCcCCCCCc
Q 010551           13 DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSLAWSNLRLETELDADKTEDSGLLEVLPPM   91 (507)
Q Consensus        13 ~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~-~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r   91 (507)
                      ..|.......+.+....-+++...++..||+|..       .+..... .-.+|.+++...               +.|-
T Consensus        47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~---------------~lpg  104 (302)
T PF14870_consen   47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSS---------------KLPG  104 (302)
T ss_dssp             SS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----T---------------T-SS
T ss_pred             ccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCC---------------CCCC
Confidence            4788876422222112233444458889998741       2333333 345899987432               1223


Q ss_pred             cceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCc
Q 010551           92 SDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        92 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~  169 (507)
                      ..+.+..+ ++.++++|..       ..+|+=.-.-.+|+.+...   ..+ .-..+... ++++++.+....      -
T Consensus       105 s~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~---~~g-s~~~~~r~~dG~~vavs~~G~------~  167 (302)
T PF14870_consen  105 SPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSE---TSG-SINDITRSSDGRYVAVSSRGN------F  167 (302)
T ss_dssp             -EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTSS------E
T ss_pred             CeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccC---Ccc-eeEeEEECCCCcEEEEECccc------E
Confidence            33444444 5667776542       1255554455689987631   111 11122223 456666665432      1


Q ss_pred             EEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEE--CCCCcEEecccCCCCCCCCCcc
Q 010551          170 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD--LQTNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       170 ~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d--~~~~~W~~~~~~~~~p~~r~~~  247 (507)
                      +...|+....|....    .+..|.-.+|....++.++++. .++     .+..=+  -....|....  .+.+...+++
T Consensus       168 ~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~--~~~~~~~~~~  235 (302)
T PF14870_consen  168 YSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI--IPIKTNGYGI  235 (302)
T ss_dssp             EEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B---TTSS--S-E
T ss_pred             EEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc--CCcccCceee
Confidence            335678888899886    3456777777777777787765 222     233333  2345677742  1222222322


Q ss_pred             EEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          248 AGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       248 ~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      --+.+  ++.+++.||..      .+++=.-.-++|++...
T Consensus       236 ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~  270 (302)
T PF14870_consen  236 LDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRV  270 (302)
T ss_dssp             EEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GG
T ss_pred             EEEEecCCCCEEEEeCCc------cEEEeCCCCccceECcc
Confidence            22233  46788888743      23333345568998754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.48  E-value=6.4  Score=40.05  Aligned_cols=189  Identities=9%  Similarity=0.002  Sum_probs=96.6

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..++++|+.++.-+.+.....                 ........- +++|++.....+    ..++|++|+.++..+.
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g-----------------~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~  281 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEG-----------------LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSR  281 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCC-----------------CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEE
Confidence            479999999887766543211                 011111111 345554332221    2469999999998877


Q ss_pred             eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551          132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  210 (507)
                      +..   .+. ........-++ .|++....++    ...++.+|+.++.+..+...+    .........-+++.|++..
T Consensus       282 lt~---~~~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        282 VTN---HPA-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             ccc---CCC-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEE
Confidence            642   111 11111112233 5655432221    346999999999888775322    1111112223445555544


Q ss_pred             CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEe
Q 010551          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v  284 (507)
                      ..++   ...++++|+.++..+.+....   .  .......-+++.+++....+  ....+++++.....=..+
T Consensus       350 ~~~~---~~~l~~~dl~tg~~~~lt~~~---~--~~~p~~spdg~~i~~~~~~~--g~~~l~~~~~~g~~~~~l  413 (430)
T PRK00178        350 RQDG---NFHVAAQDLQRGSVRILTDTS---L--DESPSVAPNGTMLIYATRQQ--GRGVLMLVSINGRVRLPL  413 (430)
T ss_pred             ccCC---ceEEEEEECCCCCEEEccCCC---C--CCCceECCCCCEEEEEEecC--CceEEEEEECCCCceEEC
Confidence            3222   236999999998887764211   1  11112223556666643322  234577777755433334

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.41  E-value=0.85  Score=43.02  Aligned_cols=49  Identities=22%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             HHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       417 ~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +++..+..++..+..+|.....++...++.+..|..++..+++++++.-
T Consensus       206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~  254 (306)
T PF04849_consen  206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA  254 (306)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555555566666666666666667777777777777777666553

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK03629 tolB translocation protein TolB; Provisional

Probab=94.40  E-value=6.7  Score=39.95  Aligned_cols=149  Identities=9%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ..++.+|+.+++-+.+.   ..+..... ....-++ +|++....++    ..+++.+|+.+.....+...   +.  ..
T Consensus       223 ~~i~i~dl~~G~~~~l~---~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~  289 (429)
T PRK03629        223 SALVIQTLANGAVRQVA---SFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN  289 (429)
T ss_pred             cEEEEEECCCCCeEEcc---CCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence            46999999988766654   22221111 1122234 5655433222    23599999999887776431   11  11


Q ss_pred             ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEE
Q 010551          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d  275 (507)
                      .......++..++|......  ...+|.+|+.++....+...+    .........-+++.+++.+...  ...+++++|
T Consensus       290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~d  361 (429)
T PRK03629        290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNG--GQQHIAKQD  361 (429)
T ss_pred             CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccC--CCceEEEEE
Confidence            12222334333444332111  247999999887766653211    1111111222444444433222  234689999


Q ss_pred             CCCCcEEEecc
Q 010551          276 MTKLAWSILTS  286 (507)
Q Consensus       276 ~~~~~W~~v~~  286 (507)
                      +.+..+..+..
T Consensus       362 l~~g~~~~Lt~  372 (429)
T PRK03629        362 LATGGVQVLTD  372 (429)
T ss_pred             CCCCCeEEeCC
Confidence            99998887753

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.39  E-value=0.47  Score=43.17  Aligned_cols=98  Identities=15%  Similarity=0.224  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh----HH-
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES----SQ-  465 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~----~~-  465 (507)
                      |+.|......+.....+...+.+.|+.-++..+...++...+...++.+++.+.+.|..++..-+.+...++-    +. 
T Consensus        20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~   99 (307)
T PF10481_consen   20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF   99 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence            3334333333333333334445555555555555555555556666667777766666665544433333222    22 


Q ss_pred             ------HHHHHHHHHHHhHHHHHHHHHHh
Q 010551          466 ------TIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       466 ------~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                            ...+.++.+.+++.+...+||..
T Consensus       100 lEgQl~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen  100 LEGQLNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  23344555555555555556543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=94.35  E-value=0.25  Score=49.20  Aligned_cols=21  Identities=14%  Similarity=0.268  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      +|+.++++++.+++++.++|+
T Consensus       120 ql~~~~~~~~~~l~~l~~~l~  140 (472)
T TIGR03752       120 QLKSERQQLQGLIDQLQRRLA  140 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555555554

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.31  E-value=0.3  Score=43.59  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ....+...+++++..+.+....+...+.++..++.++.+++..+.++.+-.+.++
T Consensus        96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~  150 (194)
T PF08614_consen   96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ  150 (194)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444455555555555555555555566666666666655555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.13  E-value=0.57  Score=51.17  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=10.8

Q ss_pred             HHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551          434 SSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       434 ~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      .+.++++..++.+++++|.++..+.++
T Consensus       397 ~e~e~k~~~L~~evek~e~~~~~L~~e  423 (1074)
T KOG0250|consen  397 EERENKLEQLKKEVEKLEEQINSLREE  423 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444433333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.13  E-value=0.45  Score=51.90  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~  438 (507)
                      +..++..+++++..+.+......++...+...++.+..++.++.+.+.
T Consensus       677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334455666666666666666666666666666666666666665555

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=94.04  E-value=0.49  Score=45.15  Aligned_cols=48  Identities=17%  Similarity=0.171  Sum_probs=26.6

Q ss_pred             hhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      ..|+..|++.-+++.+++++..+.++.++.-++..++.+.+-+....+
T Consensus       288 r~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareak  335 (442)
T PF06637_consen  288 RSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAK  335 (442)
T ss_pred             HHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666777776666666666555554444444333333333

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.03  E-value=0.31  Score=42.84  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=43.6

Q ss_pred             HHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ++...++++.+++...++..|...+++++.+.++....+..++.++..+.+...++.-++..++.+..++
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            4444455555566666666666667777777766666666666666666666666665555555554444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.93  E-value=7.5  Score=38.75  Aligned_cols=188  Identities=11%  Similarity=0.116  Sum_probs=99.6

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE--ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                      +.++|+++...+.-+++..-|     |...-++-  -++.|++.--.-.+..-...+|..+.+..+...+.        .
T Consensus       106 taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln--------l  172 (668)
T COG4946         106 TADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN--------L  172 (668)
T ss_pred             cccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc--------C
Confidence            557999999999988887554     22221111  24555554433222112334555554444444332        2


Q ss_pred             CCceEEEEcCCEEEEEcCCC---------CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCC
Q 010551          194 YDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       194 ~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                      .-.+..++.++ ++|+|-..         .+..-..+|+=......+.++   -+++...+  +-+++++++|.+.-.. 
T Consensus       173 Gpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~---vdl~~~vS--~PmIV~~RvYFlsD~e-  245 (668)
T COG4946         173 GPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKF---VDLDGNVS--SPMIVGERVYFLSDHE-  245 (668)
T ss_pred             CceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeee---eecCCCcC--CceEEcceEEEEeccc-
Confidence            22345667777 66666432         112334566554444455543   12222211  2256788999885433 


Q ss_pred             CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCCCCcc
Q 010551          265 NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI  340 (507)
Q Consensus       265 ~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~~~  340 (507)
                        ....+|.-|++.+--++-.+.....|    ++    +..+|...++--||       |+|.||+.+..-++..+
T Consensus       246 --G~GnlYSvdldGkDlrrHTnFtdYY~----R~----~nsDGkrIvFq~~G-------dIylydP~td~lekldI  304 (668)
T COG4946         246 --GVGNLYSVDLDGKDLRRHTNFTDYYP----RN----ANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI  304 (668)
T ss_pred             --CccceEEeccCCchhhhcCCchhccc----cc----cCCCCcEEEEecCC-------cEEEeCCCcCcceeeec
Confidence              34467777877776555555544322    22    23344444444454       78999998877666554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.88  E-value=6.6  Score=38.91  Aligned_cols=43  Identities=14%  Similarity=0.109  Sum_probs=24.9

Q ss_pred             CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC
Q 010551          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS  215 (507)
Q Consensus       168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~  215 (507)
                      +.+-+||+..+.--.-     ...|+.-+++++-.....+.+|+..+.
T Consensus       198 ~t~k~wdlS~g~LLlt-----i~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  198 RTIKLWDLSLGVLLLT-----ITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             ceEEEEEeccceeeEE-----EecCCcceeEEEcccccEEEecCCcce
Confidence            4577788877743211     233555666666555556666776554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=93.84  E-value=8.6  Score=39.16  Aligned_cols=189  Identities=10%  Similarity=0.014  Sum_probs=95.0

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..++++|+.++.-+.+.....                 ........- +.+|++.....+    ...+|.+|+.++..+.
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~-----------------~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPR-----------------HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQ  281 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCC-----------------CcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEE
Confidence            468899998877655543211                 111111122 345655433221    2359999999998777


Q ss_pred             eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE-cCCEEEEE
Q 010551          132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~  209 (507)
                      +..   .+.. .......-++ .|++......    ...+|.+|+.+..-..+...+.    . ....... +++.|++.
T Consensus       282 lt~---~~~~-~~~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~----~-~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        282 VTD---GRSN-NTEPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGS----Q-NQDADVSSDGKFMVMV  348 (429)
T ss_pred             ccC---CCCC-cCceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCC----C-ccCEEECCCCCEEEEE
Confidence            642   1111 1111112234 4544332221    3479999998887766643211    1 1122222 34444444


Q ss_pred             cCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      +..++   ...++.+|+.++.+..+....     ........-+++.+++.+..+.  ...+++.+.....=..++
T Consensus       349 ~~~~g---~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        349 SSNGG---QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             EccCC---CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEECc
Confidence            33222   246999999999888764211     1111122235666666554322  235677777655544444

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.71  E-value=1.6  Score=41.84  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhh-------hhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551          391 IDAIKEDKRVLEL-------SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       391 ~~~l~~~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      +.+.+.+|+..+.       .+...+++.+..++++.++.+.+.+..+++..+..+.+.++.++..+-.+-+++..+.+.
T Consensus        90 l~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs  169 (499)
T COG4372          90 LGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS  169 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445554444       344444444444455555555555555555555555555555554443333333333333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.71  E-value=2.6  Score=32.78  Aligned_cols=35  Identities=34%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             HHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551          429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       429 ~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      ++-.++..+.+......++.+|+.++.+..+.+..
T Consensus        42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555666666677777777777777666554

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.67  E-value=1.4  Score=41.13  Aligned_cols=55  Identities=13%  Similarity=0.189  Sum_probs=24.7

Q ss_pred             hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      .+...|..++..++.+++.++...++.+.....+++++.++++++.++++-.+++
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444433333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.67  E-value=0.71  Score=43.30  Aligned_cols=20  Identities=20%  Similarity=0.169  Sum_probs=13.2

Q ss_pred             hhccchhHHHHhhccccccC
Q 010551          348 AAAASVTAAYALAKSEKLDI  367 (507)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~  367 (507)
                      +...++.|.|.++...+...
T Consensus        47 ~~iss~gwff~i~~re~qlk   66 (401)
T PF06785_consen   47 SIISSLGWFFAIGRREKQLK   66 (401)
T ss_pred             HHHHHhHHHHHhhHHHHHHH
Confidence            44566778888877665543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.60  E-value=5.9  Score=36.45  Aligned_cols=143  Identities=12%  Similarity=0.073  Sum_probs=66.0

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +.+++.|+.      ...+.+||+.++.-.....     .......+..+ . +.+++.|+.+      +.+.+||+.+.
T Consensus       105 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~  167 (289)
T cd00200         105 GRILSSSSR------DKTIKVWDVETGKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTG  167 (289)
T ss_pred             CCEEEEecC------CCeEEEEECCCcEEEEEec-----cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEcccc
Confidence            456666552      2348889988665333221     11111222222 2 3444444422      35888998754


Q ss_pred             cEE-EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEEC-CeE
Q 010551          179 TWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENW  256 (507)
Q Consensus       179 ~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l  256 (507)
                      +-. .+..     ....-.++....++..+++++.+     +.+.+||+.+......-  .  .......++.... +.+
T Consensus       168 ~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~  233 (289)
T cd00200         168 KCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYL  233 (289)
T ss_pred             ccceeEec-----CccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcE
Confidence            321 2211     11122233334444355555542     46889998775443321  0  1111222333333 345


Q ss_pred             EEEeccCCCCCcceEEEEECCCC
Q 010551          257 YIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      ++.++.+     ..+.+||+.+.
T Consensus       234 ~~~~~~~-----~~i~i~~~~~~  251 (289)
T cd00200         234 LASGSED-----GTIRVWDLRTG  251 (289)
T ss_pred             EEEEcCC-----CcEEEEEcCCc
Confidence            5554422     24778887754

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.54  E-value=6.3  Score=36.61  Aligned_cols=177  Identities=12%  Similarity=0.011  Sum_probs=92.7

Q ss_pred             eCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcC
Q 010551            9 ELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE   86 (507)
Q Consensus         9 d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      |+.+..-++.+....  .+-.+.-.+++  .+.|++.|-..  .    --.+||.++.-+..+...              
T Consensus       130 dpkt~evt~f~lp~~--~a~~nlet~vfD~~G~lWFt~q~G--~----yGrLdPa~~~i~vfpaPq--------------  187 (353)
T COG4257         130 DPKTLEVTRFPLPLE--HADANLETAVFDPWGNLWFTGQIG--A----YGRLDPARNVISVFPAPQ--------------  187 (353)
T ss_pred             cCcccceEEeecccc--cCCCcccceeeCCCccEEEeeccc--c----ceecCcccCceeeeccCC--------------
Confidence            444666666664222  23333444444  45677766311  0    116777777666555422              


Q ss_pred             CCCCccceeE-EEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEE-EEE--CCEEEEEcCCCC
Q 010551           87 VLPPMSDHCM-VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSV-TLV--GSRLIIFGGEDR  162 (507)
Q Consensus        87 ~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~-~~~--~~~iy~~GG~~~  162 (507)
                         .-.-+++ +.-++.+|+..=      .-+.+-..|+.++.=+.+.    .|.+...-+- +..  -+++++-     
T Consensus       188 ---G~gpyGi~atpdGsvwyasl------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit-----  249 (353)
T COG4257         188 ---GGGPYGICATPDGSVWYASL------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT-----  249 (353)
T ss_pred             ---CCCCcceEECCCCcEEEEec------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe-----
Confidence               2222333 344777877521      1233667777777544443    3333211111 111  1345553     


Q ss_pred             CCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       163 ~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                       ..-...+++||+.+..|.+....+.-  +|- .++-+-..+.+++     .....+.|.+||+.+.+++.+
T Consensus       250 -twg~g~l~rfdPs~~sW~eypLPgs~--arp-ys~rVD~~grVW~-----sea~agai~rfdpeta~ftv~  312 (353)
T COG4257         250 -TWGTGSLHRFDPSVTSWIEYPLPGSK--ARP-YSMRVDRHGRVWL-----SEADAGAIGRFDPETARFTVL  312 (353)
T ss_pred             -ccCCceeeEeCcccccceeeeCCCCC--CCc-ceeeeccCCcEEe-----eccccCceeecCcccceEEEe
Confidence             11245699999999999998753322  222 2333333343444     223356899999999999986

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.38  E-value=0.5  Score=46.54  Aligned_cols=66  Identities=18%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             HHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          400 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      .++..+.+....+...+++.+.++.++.+.++++..++.++-+....+.++++.+.++...+..++
T Consensus        42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            333333333333444444444444444444444444444444444444444544444444444443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.36  E-value=0.85  Score=52.79  Aligned_cols=57  Identities=14%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhh
Q 010551          390 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR  446 (507)
Q Consensus       390 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~  446 (507)
                      ..+.|+.+...++..+.......+++++.+......+++..+++...+.+++..+..
T Consensus       601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  657 (1201)
T PF12128_consen  601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQD  657 (1201)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            345555555555555555555555555555555555555554444444444444333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.34  E-value=1.1  Score=41.54  Aligned_cols=11  Identities=18%  Similarity=0.323  Sum_probs=4.4

Q ss_pred             HHHHHHHHhHH
Q 010551          469 NEVQILRQQKS  479 (507)
Q Consensus       469 ~e~~~~~~~~~  479 (507)
                      ++..++++++.
T Consensus       103 ~Ea~~lq~el~  113 (246)
T PF00769_consen  103 EEAEELQEELE  113 (246)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.27  E-value=2.7  Score=34.88  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=9.9

Q ss_pred             HHHHHhhHHHhhhhhhhhHHHHHH
Q 010551          433 LSSVQGQLVAERSRCFKLEAQIAE  456 (507)
Q Consensus       433 l~~~~~~~~~~~~~~~~~e~~~~e  456 (507)
                      |..++.+++..+..+..++.....
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~~   84 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAES   84 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=93.25  E-value=1.5  Score=43.11  Aligned_cols=47  Identities=21%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHH
Q 010551          385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK  431 (507)
Q Consensus       385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~  431 (507)
                      ++.+..+++++.-+..++..+...+.+..+|...+......++..|+
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk  262 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK  262 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666788888888888777777777777666665555555444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.24  E-value=0.7  Score=46.87  Aligned_cols=48  Identities=21%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      ++..+..++...+.+++.+..+..+.+...++++.++++..+++.++.
T Consensus       278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444444444555555555444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.20  E-value=0.9  Score=49.95  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhcccccCCC
Q 010551          466 TIENEVQILRQQKSAFEQEMERATSVQTQGSG  497 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~  497 (507)
                      +.+.++.++.+.++..++++++......+.+.
T Consensus       444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~  475 (1293)
T KOG0996|consen  444 KCQTEIEQLEELLEKEERELDEILDSLKQETE  475 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            55556666666666666666665555444443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.13  E-value=6.3  Score=39.86  Aligned_cols=148  Identities=16%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             cceEEEEECCCC-----cEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc---EEEeccCC
Q 010551          116 SMIVRFIDLETN-----LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT---WDAVEVTQ  187 (507)
Q Consensus       116 ~~~~~~yd~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~---W~~~~~~~  187 (507)
                      .+.++.+++...     .|..+.+    +..-..+.+...++.+|+....+..   ...+..+++.+..   |..+-+  
T Consensus       251 ~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~--  321 (414)
T PF02897_consen  251 ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLI--  321 (414)
T ss_dssp             EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--
T ss_pred             CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEc--
Confidence            478999999875     7888863    2222334455568899988775433   3468888887765   764322  


Q ss_pred             CCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE----CCeEEE-Eecc
Q 010551          188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYI-VGGG  262 (507)
Q Consensus       188 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v-~GG~  262 (507)
                       .+.....-..+...+++|++..=.+   ....|.++++. ..|....    .|.+-.+......    .+.+++ +.+.
T Consensus       322 -~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~-~~~~~~~----~~~p~~g~v~~~~~~~~~~~~~~~~ss~  392 (414)
T PF02897_consen  322 -PEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDLD-DGKESRE----IPLPEAGSVSGVSGDFDSDELRFSYSSF  392 (414)
T ss_dssp             ---SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEETT--TEEEEE----EESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred             -CCCCceeEEEEEEECCEEEEEEEEC---CccEEEEEECC-CCcEEee----ecCCcceEEeccCCCCCCCEEEEEEeCC
Confidence             1112112222333466676653322   23578999988 2333321    1222222211222    234443 3332


Q ss_pred             CCCCCcceEEEEECCCCcEEEe
Q 010551          263 DNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       263 ~~~~~~~~~~~~d~~~~~W~~v  284 (507)
                      .   .-..+|.||+.+++.+.+
T Consensus       393 ~---~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  393 T---TPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             T---EEEEEEEEETTTTCEEEE
T ss_pred             C---CCCEEEEEECCCCCEEEE
Confidence            2   234689999999987665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK02889 tolB translocation protein TolB; Provisional

Probab=93.00  E-value=12  Score=38.17  Aligned_cols=183  Identities=9%  Similarity=-0.004  Sum_probs=90.2

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..++++|+.++.=..+....                 .........- +++|++......    ..++|.+|+.++..+.
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFK-----------------GSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRR  278 (427)
T ss_pred             cEEEEEECCCCCEEEeecCC-----------------CCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEE
Confidence            46999999887654443221                 1111111222 345554433222    3569999998887666


Q ss_pred             eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEE-EcCCEEEEE
Q 010551          132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~  209 (507)
                      +..   .+ .........-++ +|++.....+    ...+|.+|..+.....+...+.     ....... -+++.|++.
T Consensus       279 lt~---~~-~~~~~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g~-----~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        279 LTQ---SS-GIDTEPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTGS-----YNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCC---CC-CCCcCeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCCC-----CcCceEECCCCCEEEEE
Confidence            532   11 111111222244 5544332211    3468999988887777753221     1112222 234545544


Q ss_pred             cCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      ...++   ...++++|+.++....+.....     .......-+++.+++....+  ....+++++....
T Consensus       346 s~~~g---~~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~--g~~~l~~~~~~g~  405 (427)
T PRK02889        346 SRVGG---AFKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG--GRSVLAAVSSDGR  405 (427)
T ss_pred             EccCC---cEEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC--CCEEEEEEECCCC
Confidence            33222   1369999999888776632111     11112222555665544322  2345777777543

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=92.90  E-value=1.1  Score=49.12  Aligned_cols=9  Identities=22%  Similarity=0.313  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010551          392 DAIKEDKRV  400 (507)
Q Consensus       392 ~~l~~~~~~  400 (507)
                      +.|++++++
T Consensus       523 ~~l~~~~~~  531 (782)
T PRK00409        523 ASLEELERE  531 (782)
T ss_pred             HHHHHHHHH
Confidence            333333333

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=92.88  E-value=1.7  Score=43.80  Aligned_cols=58  Identities=21%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             hhhhhhhHHHHHH-HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccc-cCCCceee
Q 010551          444 RSRCFKLEAQIAE-LQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQT-QGSGGVWR  501 (507)
Q Consensus       444 ~~~~~~~e~~~~e-~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~-q~~~g~~~  501 (507)
                      ++..+++++++++ ..+..++...+.+++..++...+++.++...++.... .+.+|.||
T Consensus       138 ~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG  197 (448)
T COG1322         138 REVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG  197 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence            3334444444444 4444444456666666666666666666544433322 78899997

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=92.88  E-value=0.57  Score=45.44  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=11.6

Q ss_pred             HHHHHHHHhHHHHHHHHH
Q 010551          469 NEVQILRQQKSAFEQEME  486 (507)
Q Consensus       469 ~e~~~~~~~~~~~~~~~~  486 (507)
                      ||+++++.+++..|++++
T Consensus       309 kelE~lR~~L~kAEkele  326 (575)
T KOG4403|consen  309 KELEQLRVALEKAEKELE  326 (575)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            566666666666666665

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.85  E-value=0.85  Score=48.53  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  450 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~  450 (507)
                      ..+..++.+.+.....+...+.+..+|.....++....+..+.+....+.++...+.|+..+
T Consensus        34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rl   95 (717)
T PF09730_consen   34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARL   95 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555555655655566666666666666666666666666555555555555554444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.85  E-value=8  Score=35.92  Aligned_cols=221  Identities=14%  Similarity=0.086  Sum_probs=115.1

Q ss_pred             EeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCc
Q 010551            7 HLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL   85 (507)
Q Consensus         7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ++||.+.+=.+.|    ++..-..|.+++- ++..+|.-+      ...+-.+|+.+..-+..+...+.           
T Consensus        87 hLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~-----------  145 (353)
T COG4257          87 HLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEH-----------  145 (353)
T ss_pred             ecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecC------cceeEEecCcccceEEeeccccc-----------
Confidence            5677777777665    5555566666554 344444432      12588899988877776654321           


Q ss_pred             CCCCCccceeEEEEC--CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEE-EEECCEEEEEcCCCC
Q 010551           86 EVLPPMSDHCMVKWG--TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSV-TLVGSRLIIFGGEDR  162 (507)
Q Consensus        86 ~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~-~~~~~~iy~~GG~~~  162 (507)
                          +-.+--..+++  ++|+..|-.....       .+|+.++.-+..    +.|.+-.-+.+ +.-++.+|+.-=   
T Consensus       146 ----a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vf----paPqG~gpyGi~atpdGsvwyasl---  207 (353)
T COG4257         146 ----ADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVF----PAPQGGGPYGICATPDGSVWYASL---  207 (353)
T ss_pred             ----CCCcccceeeCCCccEEEeeccccce-------ecCcccCceeee----ccCCCCCCcceEECCCCcEEEEec---
Confidence                12222233443  5566655322111       455555554443    23333333333 334677776421   


Q ss_pred             CCCccCcEEEEECCCCcEEEeccCCCCCCC-CCCceEE-EEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCC
Q 010551          163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAP-RYDHSAA-LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  240 (507)
Q Consensus       163 ~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~-r~~~~~~-~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  240 (507)
                         .-|-+-+.|+.+..=+.+..    |.+ ..+..-+ +-..+.+.+.     ......+++||+++.+|......+..
T Consensus       208 ---agnaiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~sW~eypLPgs~  275 (353)
T COG4257         208 ---AGNAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTSWIEYPLPGSK  275 (353)
T ss_pred             ---cccceEEcccccCCcceecC----CCcccccccccccCccCcEEEe-----ccCCceeeEeCcccccceeeeCCCCC
Confidence               12457778887775555543    222 1111111 1112335553     11224699999999999985322222


Q ss_pred             CCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          241 VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       241 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      +  |-+ ++-+- .+++++-     .-..+.+..||+.+.+++.++.
T Consensus       276 a--rpy-s~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         276 A--RPY-SMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             C--Ccc-eeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence            2  222 22222 3455543     2234568899999999888753

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=92.83  E-value=1.1  Score=43.47  Aligned_cols=14  Identities=21%  Similarity=0.472  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHhH
Q 010551          451 EAQIAELQKMLESS  464 (507)
Q Consensus       451 e~~~~e~~~~~~~~  464 (507)
                      +.++..++..+...
T Consensus       259 ~~EveRlrt~l~~A  272 (552)
T KOG2129|consen  259 QAEVERLRTYLSRA  272 (552)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PRK04043 tolB translocation protein TolB; Provisional

Probab=92.69  E-value=13  Score=37.78  Aligned_cols=183  Identities=10%  Similarity=0.059  Sum_probs=97.0

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~  196 (507)
                      .+|++|+.+++=+.+..   .+ +........-++ +|++.-..++    ..++|.+|+.+..++.+...   +.  ...
T Consensus       214 ~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~---~~--~d~  280 (419)
T PRK04043        214 TLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNY---PG--IDV  280 (419)
T ss_pred             EEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccC---CC--ccC
Confidence            69999999987666652   11 111111122244 5655443322    35799999999999888532   11  111


Q ss_pred             eEEE-EcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECC-eEEEEeccCCCC---CcceE
Q 010551          197 SAAL-HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNN---GCQET  271 (507)
Q Consensus       197 ~~~~-~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~---~~~~~  271 (507)
                      .... -+++.|++.....+   ..++|++|+.++..+.+...+.     ... ...-++ .++.........   ...++
T Consensus       281 ~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I  351 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGKNTFNL  351 (419)
T ss_pred             ccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCCCCcEE
Confidence            1222 23455666543322   2589999999998877643221     122 222234 444433222111   23589


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       272 ~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +++|+.+..++.|.....       ...  ....+++..|+.....  .....++.+++..+
T Consensus       352 ~v~d~~~g~~~~LT~~~~-------~~~--p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~  402 (419)
T PRK04043        352 YLISTNSDYIRRLTANGV-------NQF--PRFSSDGGSIMFIKYL--GNQSALGIIRLNYN  402 (419)
T ss_pred             EEEECCCCCeEECCCCCC-------cCC--eEECCCCCEEEEEEcc--CCcEEEEEEecCCC
Confidence            999999999888765311       111  1122333334333322  22456888887654

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=92.63  E-value=0.97  Score=53.37  Aligned_cols=13  Identities=8%  Similarity=0.023  Sum_probs=5.0

Q ss_pred             CCeEeeCCCCceE
Q 010551            4 GSWHLELPYDLWV   16 (507)
Q Consensus         4 ~~~~~d~~~~~W~   16 (507)
                      |.||.-+...+|.
T Consensus       116 GLFcVviNPyk~l  128 (1930)
T KOG0161|consen  116 GLFCVVINPYKRL  128 (1930)
T ss_pred             cceeEEecCCcCC
Confidence            3444333333333

>PRK13684 Ycf48-like protein; Provisional

Probab=92.60  E-value=11  Score=36.89  Aligned_cols=156  Identities=9%  Similarity=0.045  Sum_probs=74.4

Q ss_pred             EEEEC-CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEE-
Q 010551           96 MVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-  173 (507)
Q Consensus        96 ~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~-  173 (507)
                      +..++ +.+|+.|...       .+++-+-.-.+|+.+..    +..-..+.+....+..++..|..+      .++.- 
T Consensus       137 i~~~~~~~~~~~g~~G-------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~  199 (334)
T PRK13684        137 ITALGPGTAEMATNVG-------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTW  199 (334)
T ss_pred             EEEECCCcceeeeccc-------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEc
Confidence            44443 4466655321       24444334568998752    222222333333343344433221      23332 


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEE-C-CCCcEEecccCCCCCCCCCccEEEE
Q 010551          174 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAGHAGIT  251 (507)
Q Consensus       174 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~~~~~~  251 (507)
                      |....+|+.+..    +..+..++++...++.++++|..+       ..++. . .-.+|+.+.. +........++++.
T Consensus       200 ~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~  267 (334)
T PRK13684        200 EPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAY  267 (334)
T ss_pred             CCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEE
Confidence            334457998853    344555666666667788887643       12332 2 2247987521 11101122233333


Q ss_pred             E-CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          252 I-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       252 ~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      . ++.++++|...      -++.-.....+|+.+..
T Consensus       268 ~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~  297 (334)
T PRK13684        268 RTPGEIWAGGGNG------TLLVSKDGGKTWEKDPV  297 (334)
T ss_pred             cCCCCEEEEcCCC------eEEEeCCCCCCCeECCc
Confidence            3 45777776521      13333334568998753

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.60  E-value=1.6  Score=40.88  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=11.8

Q ss_pred             hHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       432 el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      |++..+..++.+++.+..+++++.++++++..+
T Consensus        64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   64 EIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=92.56  E-value=1.5  Score=48.98  Aligned_cols=6  Identities=67%  Similarity=0.844  Sum_probs=2.5

Q ss_pred             CEEEEE
Q 010551          101 TKLLIL  106 (507)
Q Consensus       101 ~~lyv~  106 (507)
                      +.+|++
T Consensus        87 ~~lyIV   92 (1021)
T PTZ00266         87 QKLYIL   92 (1021)
T ss_pred             CEEEEE
Confidence            344443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=92.50  E-value=2.5  Score=37.34  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      .....++..+.....+++.-+.+++....+.+.+++++..++.++.+++..+...
T Consensus        52 ~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   52 SQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            3444444444444455555556666666666666677777777777666665553

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=92.49  E-value=1.5  Score=32.40  Aligned_cols=69  Identities=17%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             hHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551          405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       405 ~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~  479 (507)
                      +...+.+...+.+++...+....+.+..+...-++++..+..+.+||.....+++      +-|+|+.++..+++
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~------~YEeEI~rLr~eLe   74 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ------QYEEEIARLRRELE   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence            3344445555555555555555666666666666666666666666655544333      23444444444443

; PDB: 3VP9_B 3VP8_B.

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=92.47  E-value=2.7  Score=40.39  Aligned_cols=21  Identities=5%  Similarity=0.286  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      .|.|++++..++++++..++.
T Consensus       360 ~L~keLeekkreleql~~q~~  380 (442)
T PF06637_consen  360 SLAKELEEKKRELEQLKMQLA  380 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555566665555555555543

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=92.44  E-value=1.1  Score=39.42  Aligned_cols=57  Identities=25%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             HhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHH
Q 010551          431 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       431 ~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      ..|...-..++.++.++..|.+...-+++++.+..    .|..+++.+..+...+.++++.
T Consensus        60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~  120 (182)
T PF15035_consen   60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ  120 (182)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777788887777666766666664    5555666655555555555543

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.40  E-value=1.4  Score=32.11  Aligned_cols=29  Identities=17%  Similarity=0.307  Sum_probs=13.5

Q ss_pred             HHhhhhhhHHHHHHhhccchhHHHhHHHH
Q 010551          408 VRTENSRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       408 ~~~~~~~l~~~l~~~~~~~~e~~~el~~~  436 (507)
                      .-..+.-|+.++++++.++..+.++.+..
T Consensus        16 AvdtI~LLqmEieELKekn~~L~~e~~~~   44 (79)
T PRK15422         16 AIDTITLLQMEIEELKEKNNSLSQEVQNA   44 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555554444444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.39  E-value=0.97  Score=41.81  Aligned_cols=17  Identities=29%  Similarity=0.475  Sum_probs=7.2

Q ss_pred             HHHHHHhHHHHHHHHHH
Q 010551          471 VQILRQQKSAFEQEMER  487 (507)
Q Consensus       471 ~~~~~~~~~~~~~~~~~  487 (507)
                      .....+++..++..+++
T Consensus       115 ~~E~~rkl~~~E~~Le~  131 (237)
T PF00261_consen  115 YEEVERKLKVLEQELER  131 (237)
T ss_dssp             HHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=92.39  E-value=0.99  Score=45.10  Aligned_cols=23  Identities=9%  Similarity=0.387  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 010551          466 TIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                      +++++.++++++++++...++++
T Consensus       113 ~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752       113 ELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444433

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=92.33  E-value=4.5  Score=33.26  Aligned_cols=87  Identities=14%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             EEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEE-EC
Q 010551           97 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DL  175 (507)
Q Consensus        97 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~-d~  175 (507)
                      +.++|-||..+-.  .......+..||+.+.+|+.+..............++.++++|-++.-........=++|++ |.
T Consensus         2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence            4568888887766  22235679999999999998863211234445566777888887765543322123468888 56


Q ss_pred             CCCcEEEecc
Q 010551          176 ETMTWDAVEV  185 (507)
Q Consensus       176 ~t~~W~~~~~  185 (507)
                      ....|.....
T Consensus        80 ~k~~Wsk~~~   89 (129)
T PF08268_consen   80 EKQEWSKKHI   89 (129)
T ss_pred             ccceEEEEEE
Confidence            6788997754

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.27  E-value=1.3  Score=51.66  Aligned_cols=6  Identities=17%  Similarity=0.158  Sum_probs=2.2

Q ss_pred             EEEEcC
Q 010551           40 LYIVGG   45 (507)
Q Consensus        40 iyi~GG   45 (507)
                      +.++-|
T Consensus        25 ~~~i~G   30 (1179)
T TIGR02168        25 ITGIVG   30 (1179)
T ss_pred             cEEEEC
Confidence            333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.26  E-value=9.7  Score=35.45  Aligned_cols=155  Identities=15%  Similarity=0.075  Sum_probs=86.8

Q ss_pred             CCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEE-Ee--ecCCC---CCCCCcCc---EEEEECCEEEEEc
Q 010551           88 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VM--ETSGK---VPVTRGGH---SVTLVGSRLIIFG  158 (507)
Q Consensus        88 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~--~~~g~---~p~~r~~~---~~~~~~~~iy~~G  158 (507)
                      |-+-.|.+.++.++.+|.--.      .++.+..||+.+++-. ..  +..+.   .|-...++   -.++-.+-|+++-
T Consensus        66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY  139 (250)
T PF02191_consen   66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY  139 (250)
T ss_pred             eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence            345677788888999988644      2667999999999765 32  21111   11111122   2233344566664


Q ss_pred             CCCCCCCccCcEEEEECCCC----cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          159 GEDRSRKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       159 G~~~~~~~~n~~~~~d~~t~----~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      ....+.. .-.+-.+|+.+.    +|..-     .+.+..+.+.++. + .||++...+... ..=.+.||+.+++=..+
T Consensus       140 at~~~~g-~ivvskld~~tL~v~~tw~T~-----~~k~~~~naFmvC-G-vLY~~~s~~~~~-~~I~yafDt~t~~~~~~  210 (250)
T PF02191_consen  140 ATEDNNG-NIVVSKLDPETLSVEQTWNTS-----YPKRSAGNAFMVC-G-VLYATDSYDTRD-TEIFYAFDTYTGKEEDV  210 (250)
T ss_pred             ecCCCCC-cEEEEeeCcccCceEEEEEec-----cCchhhcceeeEe-e-EEEEEEECCCCC-cEEEEEEECCCCceece
Confidence            4433221 123566777765    45432     3444444444333 3 388876654332 33467899998877655


Q ss_pred             ccCCCCCCCCCccEEEEEC---CeEEEE
Q 010551          235 EIKGDLVTGRAGHAGITID---ENWYIV  259 (507)
Q Consensus       235 ~~~~~~p~~r~~~~~~~~~---~~l~v~  259 (507)
                      .  -+.+.+-..+++..++   .+||+.
T Consensus       211 ~--i~f~~~~~~~~~l~YNP~dk~LY~w  236 (250)
T PF02191_consen  211 S--IPFPNPYGNISMLSYNPRDKKLYAW  236 (250)
T ss_pred             e--eeeccccCceEeeeECCCCCeEEEE
Confidence            3  2344444456666665   478887

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=92.24  E-value=4.2  Score=33.49  Aligned_cols=82  Identities=16%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCC-CCcceEEEEE-CCCCc
Q 010551          203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-NGCQETIVLN-MTKLA  280 (507)
Q Consensus       203 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d-~~~~~  280 (507)
                      |+.+|-..-. .....+.|..||+.+.+|+.+..............++.++++|.++.-.... ...-++|+++ ..+..
T Consensus         5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~   83 (129)
T PF08268_consen    5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE   83 (129)
T ss_pred             CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence            4434443332 3344567999999999999875421233445666788889998887543332 2356899884 56678


Q ss_pred             EEEec
Q 010551          281 WSILT  285 (507)
Q Consensus       281 W~~v~  285 (507)
                      |.+..
T Consensus        84 Wsk~~   88 (129)
T PF08268_consen   84 WSKKH   88 (129)
T ss_pred             EEEEE
Confidence            99763

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.19  E-value=12  Score=36.53  Aligned_cols=197  Identities=9%  Similarity=0.054  Sum_probs=92.1

Q ss_pred             CceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCc
Q 010551           13 DLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM   91 (507)
Q Consensus        13 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r   91 (507)
                      ..|+.+...-..|.  .......+ ++.+|+.|..      ..++.-+=.-.+|..+....                 .-
T Consensus       119 ~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~-----------------~g  173 (334)
T PRK13684        119 KNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVEDA-----------------AG  173 (334)
T ss_pred             CCCeEccCCcCCCC--CceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCCC-----------------cc
Confidence            38888863111221  22223333 4456666531      23444333445898876422                 12


Q ss_pred             cceeEEEECCEEEEEeccCCCCCCcceEEEE-ECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCc
Q 010551           92 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFI-DLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        92 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y-d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~  169 (507)
                      .-+.+....+..|++.|...      .++.- +....+|+.+.    .+..+.-++++.. ++.++++|...        
T Consensus       174 ~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G--------  235 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG--------  235 (334)
T ss_pred             eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC--------
Confidence            23344444444444444332      13332 33445798875    2333444444443 56788876532        


Q ss_pred             EEEEE-CC-CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc
Q 010551          170 VHFLD-LE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       170 ~~~~d-~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  247 (507)
                      ...+. .+ -..|+.+... ........++++...++.+++.|..+      .++.-.-.-.+|+.+......  +...+
T Consensus       236 ~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~~~--~~~~~  306 (334)
T PRK13684        236 QIRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGEEV--PSNFY  306 (334)
T ss_pred             EEEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCCCC--CcceE
Confidence            23342 22 3479876431 00011222334444466688877642      233322234589886321222  22344


Q ss_pred             EEEEE-CCeEEEEec
Q 010551          248 AGITI-DENWYIVGG  261 (507)
Q Consensus       248 ~~~~~-~~~l~v~GG  261 (507)
                      .++.. +++.|++|.
T Consensus       307 ~~~~~~~~~~~~~G~  321 (334)
T PRK13684        307 KIVFLDPEKGFVLGQ  321 (334)
T ss_pred             EEEEeCCCceEEECC
Confidence            44544 567777764

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.16  E-value=2.7  Score=33.98  Aligned_cols=12  Identities=42%  Similarity=0.645  Sum_probs=4.8

Q ss_pred             hhHHHHHHHHHH
Q 010551          449 KLEAQIAELQKM  460 (507)
Q Consensus       449 ~~e~~~~e~~~~  460 (507)
                      +++.++++++++
T Consensus        72 ~L~~el~~l~~r   83 (120)
T PF12325_consen   72 ELEQELEELQQR   83 (120)
T ss_pred             HHHHHHHHHHHH
Confidence            334444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=92.15  E-value=4.3  Score=35.36  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=22.8

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      -++..+..++.-+.|-.+..+++...++.+--+.++.++.++++.+.
T Consensus        76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~  122 (205)
T KOG1003|consen   76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD  122 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33334444444455555555555555554444444445444444443

>TIGR01069 mutS2 MutS2 family protein

Probab=92.10  E-value=1.4  Score=48.19  Aligned_cols=8  Identities=25%  Similarity=-0.155  Sum_probs=3.2

Q ss_pred             CCceeeee
Q 010551          496 SGGVWRWI  503 (507)
Q Consensus       496 ~~g~~~~~  503 (507)
                      ..|-.-||
T Consensus       626 ~~Gd~V~v  633 (771)
T TIGR01069       626 KIGDKVRI  633 (771)
T ss_pred             CCCCEEEE
Confidence            33443343

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.03  E-value=2.9  Score=40.50  Aligned_cols=66  Identities=26%  Similarity=0.415  Sum_probs=29.2

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH--------HHHHHHHHHHHHhHHHHHHH
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS--------QTIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~--------~~le~e~~~~~~~~~~~~~~  484 (507)
                      +.....++.+.+..++..+.++..++.+...|+.++.+++.++...        ..++.++.+++.+.+...++
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e  284 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE  284 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444332222        24445555555544444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=91.95  E-value=3.8  Score=35.72  Aligned_cols=36  Identities=14%  Similarity=0.311  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccch
Q 010551          392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS  427 (507)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  427 (507)
                      ..|..+-..+...+.....-.++|...+..+..++.
T Consensus        18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~   53 (193)
T PF14662_consen   18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK   53 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334433333333444444444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.94  E-value=3.5  Score=39.91  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=9.8

Q ss_pred             HHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551          436 VQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       436 ~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      .+..++.++.++..++.....++.++.
T Consensus       221 ~r~~~~~l~~el~~l~~~~~~Le~~l~  247 (312)
T PF00038_consen  221 LRRQIQSLQAELESLRAKNASLERQLR  247 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHhhhhhhccccchhhhhhhHH
Confidence            333333333333333333333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.92  E-value=2.4  Score=42.96  Aligned_cols=11  Identities=0%  Similarity=0.157  Sum_probs=4.0

Q ss_pred             HHHhHHHHHHH
Q 010551          474 LRQQKSAFEQE  484 (507)
Q Consensus       474 ~~~~~~~~~~~  484 (507)
                      ++.++...+.+
T Consensus       251 ~~~~l~~~~~~  261 (423)
T TIGR01843       251 AQARLAELRER  261 (423)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.89  E-value=2  Score=45.94  Aligned_cols=33  Identities=15%  Similarity=0.363  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHhhcccccC
Q 010551          463 SSQTIENEVQILRQQKSAFEQEMERATSVQTQG  495 (507)
Q Consensus       463 ~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~  495 (507)
                      +.+.|+.+++-+.++.+.++-++|=+....+.+
T Consensus       326 RaesLQ~eve~lkEr~deletdlEILKaEmeek  358 (1243)
T KOG0971|consen  326 RAESLQQEVEALKERVDELETDLEILKAEMEEK  358 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334777777777777777777766544443333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=91.85  E-value=13  Score=36.10  Aligned_cols=60  Identities=13%  Similarity=0.037  Sum_probs=31.6

Q ss_pred             CCCCeEeeCCC-CceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEcc-CCceeeec
Q 010551            2 DSGSWHLELPY-DLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLR   69 (507)
Q Consensus         2 ~~~~~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~-~~~W~~~~   69 (507)
                      |.++.+||+.+ .++..+..   .+..-..+.++.-  ++.||+.+. .    .+.+..|+.. .+.+..+.
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~   74 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALTFAA   74 (330)
T ss_pred             CCCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceEEee
Confidence            45677788854 57776653   2222222233332  456777543 1    2567778775 45565443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.81  E-value=15  Score=36.56  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=71.5

Q ss_pred             CCCeEeeCCCCc--eEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCC--ceeeeccccccCCCc
Q 010551            3 SGSWHLELPYDL--WVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~~~~~   78 (507)
                      ..++.+|+.+.+  |......   -......-....+++||+-.. ++     .+++||..++  .|..-...       
T Consensus        78 G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~-------  141 (370)
T COG1520          78 GNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGG-------  141 (370)
T ss_pred             CcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCC-------
Confidence            347788888876  8766531   001111111222566665443 22     6899999655  47553321       


Q ss_pred             cccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551           79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLII  156 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~  156 (507)
                               . ++..-..+..++.+|+..       ....++.+|..+++  |..-...+ .+....+ +.+..++.+| 
T Consensus       142 ---------~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~-~~~~~~~~vy-  201 (370)
T COG1520         142 ---------S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYG-SPAIASGTVY-  201 (370)
T ss_pred             ---------C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-ccccccc-CceeecceEE-
Confidence                     1 233333444455555543       13458888888774  87554321 1222222 2223334444 


Q ss_pred             EcCCCCCCCccCcEEEEECCCC--cEEE
Q 010551          157 FGGEDRSRKLLNDVHFLDLETM--TWDA  182 (507)
Q Consensus       157 ~GG~~~~~~~~n~~~~~d~~t~--~W~~  182 (507)
                      +|..+    ....++.+|+.++  .|..
T Consensus       202 ~~~~~----~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         202 VGSDG----YDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             EecCC----CcceEEEEEccCCcEeeee
Confidence            44332    1225899999665  5874

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.77  E-value=2  Score=50.96  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      +++++...+..+++.+.+++++
T Consensus      1122 K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.73  E-value=5.2  Score=31.19  Aligned_cols=18  Identities=11%  Similarity=0.374  Sum_probs=7.3

Q ss_pred             hhhhHHHHHHhhccchhH
Q 010551          412 NSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~  429 (507)
                      ...|+..|+..+....++
T Consensus        18 La~Le~slE~~K~S~~eL   35 (107)
T PF09304_consen   18 LASLERSLEDEKTSQGEL   35 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHH
Confidence            333444444444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=91.68  E-value=17  Score=36.99  Aligned_cols=147  Identities=10%  Similarity=0.013  Sum_probs=73.8

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ..+|++|+.+++=..+.   ..+. ........-++ +|++....++    ..++|.+|+.+.....+...   . ....
T Consensus       220 ~~I~~~dl~~g~~~~l~---~~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~~  287 (427)
T PRK02889        220 PVVYVHDLATGRRRVVA---NFKG-SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GIDT  287 (427)
T ss_pred             cEEEEEECCCCCEEEee---cCCC-CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCCc
Confidence            45999999988755554   2221 11111122233 5655443332    35799999987776665421   1 1111


Q ss_pred             ceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551          196 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~  274 (507)
                       ..... ++..|++....++   ...+|.++..++....+...+.    ........-+++.+++....+  ....++++
T Consensus       288 -~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g~----~~~~~~~SpDG~~Ia~~s~~~--g~~~I~v~  357 (427)
T PRK02889        288 -EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTGS----YNTSPRISPDGKLLAYISRVG--GAFKLYVQ  357 (427)
T ss_pred             -CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCCC----CcCceEECCCCCEEEEEEccC--CcEEEEEE
Confidence             12223 3344444322211   2478999988877766532111    111111222344444433221  12378999


Q ss_pred             ECCCCcEEEec
Q 010551          275 NMTKLAWSILT  285 (507)
Q Consensus       275 d~~~~~W~~v~  285 (507)
                      |+.+...+.+.
T Consensus       358 d~~~g~~~~lt  368 (427)
T PRK02889        358 DLATGQVTALT  368 (427)
T ss_pred             ECCCCCeEEcc
Confidence            99988877664

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=91.68  E-value=7.8  Score=39.56  Aligned_cols=75  Identities=13%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             CCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEEC--CeEEEEeccCCCC
Q 010551          190 PAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNN  266 (507)
Q Consensus       190 p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~  266 (507)
                      -.|+.+.-++... ...||+.|-.      +++|+||+..+.|-.+-....     ..--++.++  +.|+.+||-++  
T Consensus       131 RIP~~GRDm~y~~~scDly~~gsg------~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~~hgLla~Gt~~g--  197 (703)
T KOG2321|consen  131 RIPKFGRDMKYHKPSCDLYLVGSG------SEVYRLNLEQGRFLNPFETDS-----GELNVVSINEEHGLLACGTEDG--  197 (703)
T ss_pred             ecCcCCccccccCCCccEEEeecC------cceEEEEcccccccccccccc-----ccceeeeecCccceEEecccCc--
Confidence            3455555555543 2336654432      589999999999976522111     112233343  46788877444  


Q ss_pred             CcceEEEEECCCCc
Q 010551          267 GCQETIVLNMTKLA  280 (507)
Q Consensus       267 ~~~~~~~~d~~~~~  280 (507)
                         .+..+|+.+..
T Consensus       198 ---~VEfwDpR~ks  208 (703)
T KOG2321|consen  198 ---VVEFWDPRDKS  208 (703)
T ss_pred             ---eEEEecchhhh
Confidence               35566665543

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.63  E-value=0.64  Score=48.16  Aligned_cols=25  Identities=36%  Similarity=0.442  Sum_probs=10.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551          444 RSRCFKLEAQIAELQKMLESSQTIE  468 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~~~~~~le  468 (507)
                      .+++++++.+++++..+|++..+++
T Consensus       162 eer~~kl~~~~qe~naeL~rarqre  186 (916)
T KOG0249|consen  162 EERTRKLEEQLEELNAELQRARQRE  186 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.58  E-value=2.5  Score=45.73  Aligned_cols=48  Identities=15%  Similarity=0.121  Sum_probs=22.6

Q ss_pred             hhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      ..|+.+.+....++.+.+.+++.++..-+.+.+|.+++...++.+.++
T Consensus       568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R  615 (717)
T PF10168_consen  568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR  615 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444455555555544455555555444444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=91.54  E-value=1.9  Score=46.05  Aligned_cols=34  Identities=9%  Similarity=0.166  Sum_probs=16.4

Q ss_pred             HHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551          429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       429 ~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      .++.....+++.++.+++..++.+..+++-+|..
T Consensus       415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~  448 (980)
T KOG0980|consen  415 AENKALAAENRYEKLKEKYTELRQEHADLLRKYD  448 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555555555555555555444433

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=91.51  E-value=5.7  Score=34.60  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL  457 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~  457 (507)
                      +..|..+..-+++.+.........+++++.+.+....+.++....+....++..++...++.++.|-
T Consensus         6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEA   72 (205)
T KOG1003|consen    6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEA   72 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4445555555555555555667778888888888888888888888888888888877777666554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.51  E-value=1.8  Score=47.73  Aligned_cols=7  Identities=57%  Similarity=0.790  Sum_probs=3.9

Q ss_pred             EEEEEcC
Q 010551          205 YLIVFGG  211 (507)
Q Consensus       205 ~l~v~GG  211 (507)
                      .|||||=
T Consensus       128 mLFVFGf  134 (1293)
T KOG0996|consen  128 MLFVFGF  134 (1293)
T ss_pred             HHHHhhh
Confidence            3566654

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.44  E-value=1.7  Score=45.29  Aligned_cols=50  Identities=22%  Similarity=0.379  Sum_probs=27.9

Q ss_pred             HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551          430 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       430 ~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~  479 (507)
                      ...+...+.++...+.++..+++++++.++++......+.+..+++++.+
T Consensus       316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~  365 (498)
T TIGR03007       316 QIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYE  365 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            34455555555556666666666666666665554444444444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.40  E-value=4.6  Score=36.44  Aligned_cols=24  Identities=13%  Similarity=0.284  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551          466 TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      ++++.+.++-++..-++.||.|.+
T Consensus       137 DfeqrLnqAIErnAfLESELdEke  160 (333)
T KOG1853|consen  137 DFEQRLNQAIERNAFLESELDEKE  160 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHH
Confidence            444555555555556666666544

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.36  E-value=4.3  Score=38.34  Aligned_cols=19  Identities=21%  Similarity=0.496  Sum_probs=7.5

Q ss_pred             hHHHHHHhhccchhHHHhH
Q 010551          415 FREKIDEVNSTHSELSKEL  433 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el  433 (507)
                      |.++|..+..+..+++..|
T Consensus       111 L~rkl~qLr~EK~~lE~~L  129 (310)
T PF09755_consen  111 LSRKLNQLRQEKVELENQL  129 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444333333333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=91.32  E-value=6.1  Score=33.73  Aligned_cols=40  Identities=30%  Similarity=0.420  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS  430 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~  430 (507)
                      +..+...+.++-......+.+...++++|++.+.++.+.-
T Consensus         8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I   47 (159)
T PF05384_consen    8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVI   47 (159)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666666666666666666655555443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=91.31  E-value=3.5  Score=44.16  Aligned_cols=11  Identities=9%  Similarity=0.296  Sum_probs=5.3

Q ss_pred             CcEEEeccCCC
Q 010551          178 MTWDAVEVTQT  188 (507)
Q Consensus       178 ~~W~~~~~~~~  188 (507)
                      ..|....+.|.
T Consensus       175 ~r~~s~t~qgq  185 (980)
T KOG0980|consen  175 SRWVSLTPQGQ  185 (980)
T ss_pred             ccccccCCCcc
Confidence            34655544443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=91.29  E-value=6.7  Score=34.38  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=9.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHh
Q 010551          469 NEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       469 ~e~~~~~~~~~~~~~~~~~~  488 (507)
                      .+++.+++.+..+++..+.+
T Consensus       152 ~~~~~l~~~i~~l~rk~~~l  171 (177)
T PF13870_consen  152 EEVEELRKEIKELERKVEIL  171 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555444433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.27  E-value=1.6  Score=46.53  Aligned_cols=40  Identities=18%  Similarity=0.181  Sum_probs=18.5

Q ss_pred             HhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551          421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       421 ~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      ++..+++.+..|+.+++...+.+++++...|..+.++++|
T Consensus       400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ  439 (1243)
T KOG0971|consen  400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ  439 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444555555555554444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.26  E-value=0.92  Score=41.87  Aligned_cols=46  Identities=20%  Similarity=0.402  Sum_probs=17.8

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      ++.+|+.+..++++...+++..+.++.+.+..+.+++.++.++++.
T Consensus        50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~   95 (265)
T COG3883          50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN   95 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444443333333333333333333333333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.17  E-value=4  Score=37.71  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      ..++.+..+.+++..++.++.
T Consensus       194 ~aE~~v~~Le~~id~le~eL~  214 (237)
T PF00261_consen  194 FAERRVKKLEKEIDRLEDELE  214 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=91.11  E-value=4.5  Score=37.63  Aligned_cols=45  Identities=18%  Similarity=0.189  Sum_probs=18.3

Q ss_pred             HhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       421 ~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ....++++.++.+..+..+...+..++++.+++++..+++|+.+|
T Consensus       173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq  217 (267)
T PF10234_consen  173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ  217 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333344444444444444444444443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK11546 zraP zinc resistance protein; Provisional

Probab=91.10  E-value=1.6  Score=36.31  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=11.1

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHh
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~  443 (507)
                      .++...+.++++++|...+.|+..+
T Consensus        56 ~~~f~~~t~~LRqqL~aKr~ELnAL   80 (143)
T PRK11546         56 HNDFYAQTSALRQQLVSKRYEYNAL   80 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.08  E-value=1.6  Score=46.99  Aligned_cols=43  Identities=14%  Similarity=0.255  Sum_probs=17.6

Q ss_pred             HHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551          417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  459 (507)
Q Consensus       417 ~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~  459 (507)
                      .++++++.++.+...+++...++....+.++.+++..+.++++
T Consensus       209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444443333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=90.99  E-value=20  Score=36.50  Aligned_cols=183  Identities=9%  Similarity=-0.028  Sum_probs=86.3

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCE-EEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK-LLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..++++|+.++.-+.+....                 .........-+++ |++.....+    ..++|.+|+.++....
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~-----------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~  286 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFR-----------------GHNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQ  286 (429)
T ss_pred             cEEEEEeCCCCceEEEecCC-----------------CccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEe
Confidence            46899999887665554321                 1111112222444 444332221    2359999998888766


Q ss_pred             eecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551          132 METSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  210 (507)
                      +..   .+. ........-++ .|++....++    ...+|.+|..+..-..+..  .   .  ......-++++|++.+
T Consensus       287 lt~---~~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~--~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        287 LTS---GAG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G--YSAQISADGKTLVMIN  351 (429)
T ss_pred             ecc---CCC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C--CCccCCCCCCEEEEEc
Confidence            642   111 11111122244 4554433222    2467888876654333321  1   1  1111222345455543


Q ss_pred             CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      +       +.++.+|+.++.+..+...  .   ........-+++++++++..+.  ..-+++.+.....-..+.
T Consensus       352 ~-------~~i~~~Dl~~g~~~~lt~~--~---~~~~~~~sPdG~~i~~~s~~g~--~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        352 G-------DNVVKQDLTSGSTEVLSST--F---LDESPSISPNGIMIIYSSTQGL--GKVLQLVSADGRFKARLP  412 (429)
T ss_pred             C-------CCEEEEECCCCCeEEecCC--C---CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCceEEcc
Confidence            3       4688899999988765321  1   1111122235667777654322  223444555444444443

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=90.94  E-value=2.1  Score=43.31  Aligned_cols=17  Identities=18%  Similarity=0.636  Sum_probs=13.0

Q ss_pred             hhcccccCCCceeeeec
Q 010551          488 ATSVQTQGSGGVWRWIA  504 (507)
Q Consensus       488 ~~~~~~q~~~g~~~~~~  504 (507)
                      ....|+.+++|.|-|.+
T Consensus       434 ~p~vqeKK~s~IWqFFS  450 (832)
T KOG2077|consen  434 NPAVQEKKRSSIWQFFS  450 (832)
T ss_pred             CchhhhhccccHHHHHH
Confidence            34568899999998753

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=90.87  E-value=2.3  Score=49.25  Aligned_cols=6  Identities=33%  Similarity=0.523  Sum_probs=2.5

Q ss_pred             CCceee
Q 010551          496 SGGVWR  501 (507)
Q Consensus       496 ~~g~~~  501 (507)
                      -.|+.|
T Consensus       514 ~~Gv~G  519 (1163)
T COG1196         514 LPGVYG  519 (1163)
T ss_pred             CCCccc
Confidence            344444

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=90.86  E-value=1.9  Score=40.12  Aligned_cols=69  Identities=28%  Similarity=0.378  Sum_probs=39.6

Q ss_pred             HHhhccchhHHHhHHHHHhhHHHhhh-------hhhhhHHHHHHHHHHHH-------hHHHHHHHHHHHHHhHHHHHHHH
Q 010551          420 DEVNSTHSELSKELSSVQGQLVAERS-------RCFKLEAQIAELQKMLE-------SSQTIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       420 ~~~~~~~~e~~~el~~~~~~~~~~~~-------~~~~~e~~~~e~~~~~~-------~~~~le~e~~~~~~~~~~~~~~~  485 (507)
                      ++++.++.|+.+++++-++++..+.+       ++++|-+-+.|+++-.-       -....++++++++.++..|++||
T Consensus         3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeREL   82 (351)
T PF07058_consen    3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLEREL   82 (351)
T ss_pred             hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566666666666655554422       12233344444443321       12267788888888888888888


Q ss_pred             HHh
Q 010551          486 ERA  488 (507)
Q Consensus       486 ~~~  488 (507)
                      -++
T Consensus        83 ARa   85 (351)
T PF07058_consen   83 ARA   85 (351)
T ss_pred             HHh
Confidence            654

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.86  E-value=1.3  Score=48.77  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=38.4

Q ss_pred             hhhhHHHHHHhhccchhH-HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-------HHHHHHHHHHHhHHHHHH
Q 010551          412 NSRFREKIDEVNSTHSEL-SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-------TIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~-~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-------~le~e~~~~~~~~~~~~~  483 (507)
                      ...++.++++++.++++. .+-+...+.+.+..+.++..++.++.++++++.+..       .|+++.+..++..+.+.+
T Consensus       318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~  397 (754)
T TIGR01005       318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLT  397 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455544443322 222233344445455555566666666665554444       455555555555555555


Q ss_pred             HHHHhh
Q 010551          484 EMERAT  489 (507)
Q Consensus       484 ~~~~~~  489 (507)
                      .+++++
T Consensus       398 r~~e~~  403 (754)
T TIGR01005       398 NYRQAA  403 (754)
T ss_pred             HHHHHH
Confidence            555554

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.75  E-value=3.8  Score=39.31  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=13.7

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~  445 (507)
                      ...++..++...+++++.++++.+.+..++..+.
T Consensus        72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~  105 (302)
T PF10186_consen   72 LERLRERIERLRKRIEQKRERLEELRESLEQRRS  105 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444433333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.66  E-value=19  Score=35.76  Aligned_cols=153  Identities=14%  Similarity=0.048  Sum_probs=81.2

Q ss_pred             EEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCC
Q 010551           34 AVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK  111 (507)
Q Consensus        34 ~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~  111 (507)
                      +..++.+|+...      ...++.+|+.+++  |+......                ..........-+++||+-.. ..
T Consensus        65 ~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~----------------~~~~~~~~~~~~G~i~~g~~-~g  121 (370)
T COG1520          65 ADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGA----------------VAQLSGPILGSDGKIYVGSW-DG  121 (370)
T ss_pred             EeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCc----------------ceeccCceEEeCCeEEEecc-cc
Confidence            566888888611      1179999999987  86644320                01111122222677666433 22


Q ss_pred             CCCCcceEEEEECCCC--cEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC--cEEEeccCC
Q 010551          112 KSSDSMIVRFIDLETN--LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQ  187 (507)
Q Consensus       112 ~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~--~W~~~~~~~  187 (507)
                            .+++||..++  .|+.....   . ++..-.++..++.+|+-.       ..+.++.+|..++  .|..-...+
T Consensus       122 ------~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~  184 (370)
T COG1520         122 ------KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP  184 (370)
T ss_pred             ------eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc
Confidence                  5999999766  48776532   1 222222333344555432       1346888988765  587554322


Q ss_pred             CCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEe
Q 010551          188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQ  233 (507)
Q Consensus       188 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~  233 (507)
                       .+ .+.....+ +.++.+|+ |..+  . ...++.+|+.+++  |..
T Consensus       185 -~~-~~~~~~~~-~~~~~vy~-~~~~--~-~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         185 -LS-LSIYGSPA-IASGTVYV-GSDG--Y-DGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             -cc-cccccCce-eecceEEE-ecCC--C-cceEEEEEccCCcEeeee
Confidence             11 12122222 44564444 4332  1 2368999997764  774

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=90.60  E-value=7.2  Score=35.02  Aligned_cols=47  Identities=6%  Similarity=0.066  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~  437 (507)
                      ...|.+|+..+...+.+......+....+.+.+.++.+.+.+-+++.
T Consensus        79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii  125 (204)
T PRK09174         79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIA  125 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666666666655555666666666666666655555443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=90.52  E-value=14  Score=33.89  Aligned_cols=146  Identities=14%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++..++.|+.      ...+.+||..++......     ........++.+  ++.+++.|+.+      +.+..||+.+
T Consensus        62 ~~~~l~~~~~------~~~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~  124 (289)
T cd00200          62 DGTYLASGSS------DKTIRLWDLETGECVRTL-----TGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVET  124 (289)
T ss_pred             CCCEEEEEcC------CCeEEEEEcCcccceEEE-----eccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCC
Confidence            3445556654      234888888875322221     111111222222  23666666633      3588999875


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  256 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  256 (507)
                      .+-...-.    .....-.++....++.+++.|+.+     +.+.+||+.+..-...-  .  .....-.++... ++..
T Consensus       125 ~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         125 GKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATL--T--GHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             cEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeE--e--cCccccceEEECCCcCE
Confidence            54322211    111112223333334455444422     36888988754322210  0  111111222333 2335


Q ss_pred             EEEeccCCCCCcceEEEEECCCCc
Q 010551          257 YIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      +++++.+     ..+.+||+.+..
T Consensus       192 l~~~~~~-----~~i~i~d~~~~~  210 (289)
T cd00200         192 LLSSSSD-----GTIKLWDLSTGK  210 (289)
T ss_pred             EEEecCC-----CcEEEEECCCCc
Confidence            6665542     257788887643

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=90.48  E-value=7.8  Score=34.12  Aligned_cols=50  Identities=10%  Similarity=0.087  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      ...+.+++..+...+........+..+..++.+..+.+.+++-+++..+-
T Consensus        57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A  106 (181)
T PRK13454         57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET  106 (181)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666666666666666666666666666666655555444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=90.45  E-value=3  Score=44.07  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      .+.++.+...|++...+...+...|+.+.+......+++++.|.+.+.++
T Consensus        17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~   66 (617)
T PF15070_consen   17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM   66 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34445555555555555555555555555555555555555555444333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=90.44  E-value=9.5  Score=32.57  Aligned_cols=15  Identities=20%  Similarity=0.246  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHhhccc
Q 010551          478 KSAFEQEMERATSVQ  492 (507)
Q Consensus       478 ~~~~~~~~~~~~~~~  492 (507)
                      +..+...+++++..|
T Consensus       142 l~~v~~~~e~~~~~q  156 (159)
T PF05384_consen  142 LQQVSEQIEDAQQKQ  156 (159)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            334455555555443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.25  E-value=3.1  Score=44.84  Aligned_cols=9  Identities=22%  Similarity=0.741  Sum_probs=3.8

Q ss_pred             EEEEeccCC
Q 010551          103 LLILGGHYK  111 (507)
Q Consensus       103 lyv~GG~~~  111 (507)
                      +.+++|.++
T Consensus        30 ~~~i~G~Ng   38 (650)
T TIGR03185        30 IILIGGLNG   38 (650)
T ss_pred             EEEEECCCC
Confidence            444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=90.19  E-value=5.9  Score=37.80  Aligned_cols=52  Identities=19%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      +..|+..|+++++.+.++.+++.+...+++.++.....++.++.+++.++.+
T Consensus       114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~  165 (302)
T PF09738_consen  114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ  165 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=90.13  E-value=9.4  Score=33.32  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCcee
Q 010551          466 TIENEVQILRQQKSAFEQEMERATSVQTQGSGGVW  500 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~  500 (507)
                      .|+.+...++.++.++.+++.   .++.|...++|
T Consensus       158 aL~~e~~aaqaQL~~lQ~qv~---~Lq~q~~~~~~  189 (192)
T PF11180_consen  158 ALEAERRAAQAQLRQLQRQVR---QLQRQANEPIP  189 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCC
Confidence            444455555555555544443   33444455554

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=90.13  E-value=8.2  Score=34.74  Aligned_cols=53  Identities=9%  Similarity=0.179  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~  443 (507)
                      ...+.+++..++..+.+......+..+.+.+.+..+++.+.+.+++..+-..+
T Consensus        74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~e  126 (205)
T PRK06231         74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYE  126 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666677666666666666666666666666666666655554444333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.08  E-value=9.8  Score=31.51  Aligned_cols=18  Identities=28%  Similarity=0.350  Sum_probs=7.8

Q ss_pred             hhhhhhhHHHHHHHHHHH
Q 010551          444 RSRCFKLEAQIAELQKML  461 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~  461 (507)
                      ++....++.++.+++.+.
T Consensus        65 r~e~~~~~~~~~~l~~~~   82 (132)
T PF07926_consen   65 REELQELQQEINELKAEA   82 (132)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=90.08  E-value=20  Score=35.17  Aligned_cols=233  Identities=14%  Similarity=0.106  Sum_probs=109.6

Q ss_pred             eEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           55 VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        55 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ++.||..++++..+.....                 -..++..++   ++.||+..... .....-..+..+..+++.+.
T Consensus        17 ~~~~d~~~g~l~~~~~~~~-----------------~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~   78 (345)
T PF10282_consen   17 VFRFDEETGTLTLVQTVAE-----------------GENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTL   78 (345)
T ss_dssp             EEEEETTTTEEEEEEEEEE-----------------SSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCCceEeeeecC-----------------CCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEE
Confidence            4455668899988765321                 112222233   56788875543 11113335555566678887


Q ss_pred             eecCCCCCCCCcCcEEEEE--C-CEEEEEcCCCCCCCccCcEEEEECCCC-cEEEe----cc--CCCCC---CCCCCceE
Q 010551          132 METSGKVPVTRGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAV----EV--TQTPP---APRYDHSA  198 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~--~-~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~----~~--~~~~p---~~r~~~~~  198 (507)
                      +..   .+..-...+.+.+  + ..||+.- +.     .+.+.+|++... .-...    ..  .++-|   .....|.+
T Consensus        79 ~~~---~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v  149 (345)
T PF10282_consen   79 LNS---VPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV  149 (345)
T ss_dssp             EEE---EEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred             eee---eccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence            763   2322222233334  3 3565542 21     245788887663 22221    11  11111   12223444


Q ss_pred             EEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCCCCcc-EEEEE--CCeEEEEeccCCCCCcceEE
Q 010551          199 ALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGH-AGITI--DENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       199 ~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~  272 (507)
                      .... ++++|+..=     -.+.|+.|++....  ....... ..|. -.+. .++..  +..+||+....     +.+.
T Consensus       150 ~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~-G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~  217 (345)
T PF10282_consen  150 VFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSI-KVPP-GSGPRHLAFSPDGKYAYVVNELS-----NTVS  217 (345)
T ss_dssp             EE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEE-ECST-TSSEEEEEE-TTSSEEEEEETTT-----TEEE
T ss_pred             EECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeecc-cccc-CCCCcEEEEcCCcCEEEEecCCC-----CcEE
Confidence            4443 456666421     13578888887665  5442211 1222 1222 22222  34788886532     3455


Q ss_pred             EEECC--CCcEEEeccCCCCCCCCCCC-CceEEEEEcCceEEEEEccCCCCcCceEEEEEC
Q 010551          273 VLNMT--KLAWSILTSVKGRNPLASEG-LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       273 ~~d~~--~~~W~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~  330 (507)
                      +|+..  +..++.+...+......... ......+.+++.+||+.-.    ..+.+.+|++
T Consensus       218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr----~~~sI~vf~~  274 (345)
T PF10282_consen  218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR----GSNSISVFDL  274 (345)
T ss_dssp             EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC----TTTEEEEEEE
T ss_pred             EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec----cCCEEEEEEE
Confidence            55544  66666654333221111112 3333444455678887532    2566777776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.99  E-value=28  Score=36.55  Aligned_cols=202  Identities=13%  Similarity=0.086  Sum_probs=100.5

Q ss_pred             CCeEeeCCCC--ceEEeecCCC-C-C---CccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeecccccc
Q 010551            4 GSWHLELPYD--LWVTLPVSGA-R-P---SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETEL   74 (507)
Q Consensus         4 ~~~~~d~~~~--~W~~~~~~~~-~-p---~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~   74 (507)
                      .++++|..+.  .|+.-+.... . +   ........++.++.||+...      ...++.+|..+++  |+.-..... 
T Consensus        80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l~ALDa~TGk~~W~~~~~~~~-  152 (527)
T TIGR03075        80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARLVALDAKTGKVVWSKKNGDYK-  152 (527)
T ss_pred             cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEEEEEECCCCCEEeeccccccc-
Confidence            4677787754  6775442110 0 0   01122334556788886432      2469999998875  765321110 


Q ss_pred             CCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCC------------C
Q 010551           75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVP------------V  140 (507)
Q Consensus        75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p------------~  140 (507)
                                   .......+-++.++.||+-..... ......+..||..|++  |+.-...+...            +
T Consensus       153 -------------~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~  218 (527)
T TIGR03075       153 -------------AGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP  218 (527)
T ss_pred             -------------ccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence                         001122344556787776532211 1123469999999985  77543211100            0


Q ss_pred             ----------CCcCc---EEEEEC---CEEEEEcCC----C-----CCCCccCcEEEEECCCCc--EEEeccCCCCCCCC
Q 010551          141 ----------TRGGH---SVTLVG---SRLIIFGGE----D-----RSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPR  193 (507)
Q Consensus       141 ----------~r~~~---~~~~~~---~~iy~~GG~----~-----~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r  193 (507)
                                .+.+.   ....++   +.+|+--|.    .     +++.+.+++..+|++|++  |.--.+..+.-.--
T Consensus       219 ~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d  298 (527)
T TIGR03075       219 GAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYD  298 (527)
T ss_pred             ccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcccc
Confidence                      01110   112333   345554343    1     234567899999999875  87665433322111


Q ss_pred             CCceEEEE----cCC--EEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          194 YDHSAALH----ANR--YLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       194 ~~~~~~~~----~~~--~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      .....+.+    +++  .+++.+..++     .+|.+|..+++-
T Consensus       299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G-----~~~vlDr~tG~~  337 (527)
T TIGR03075       299 GVNEMILFDLKKDGKPRKLLAHADRNG-----FFYVLDRTNGKL  337 (527)
T ss_pred             CCCCcEEEEeccCCcEEEEEEEeCCCc-----eEEEEECCCCce
Confidence            11122222    222  3666666543     577888777653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.96  E-value=3.7  Score=41.50  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=24.7

Q ss_pred             HHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551          395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  450 (507)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~  450 (507)
                      +.+..++...+...+.+..+|.+..+...+..+..+-+-...+.++...+.|+..+
T Consensus       113 eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl  168 (772)
T KOG0999|consen  113 ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL  168 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444445555544444444444444333333444444444444433

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.76  E-value=14  Score=32.90  Aligned_cols=99  Identities=18%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             eeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEE
Q 010551           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  171 (507)
Q Consensus        94 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~  171 (507)
                      .++...+++||.--|..+.+    .+.++|+.+++  |+..-   + |+...+-..+..++.+|..-=.+.      -.+
T Consensus        49 QGL~~~~g~i~esTG~yg~S----~ir~~~L~~gq~~~s~~l---~-~~~~FgEGit~~gd~~y~LTw~eg------vaf  114 (262)
T COG3823          49 QGLEYLDGHILESTGLYGFS----KIRVSDLTTGQEIFSEKL---A-PDTVFGEGITKLGDYFYQLTWKEG------VAF  114 (262)
T ss_pred             cceeeeCCEEEEeccccccc----eeEEEeccCceEEEEeec---C-CccccccceeeccceEEEEEeccc------eeE
Confidence            35666688888887776544    49999999886  44332   2 345666788889999998754432      367


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCC
Q 010551          172 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  212 (507)
Q Consensus       172 ~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~  212 (507)
                      .||+.+.+-     .|..+.+--+-+.+.-+. .+++--|.
T Consensus       115 ~~d~~t~~~-----lg~~~y~GeGWgLt~d~~-~LimsdGs  149 (262)
T COG3823         115 KYDADTLEE-----LGRFSYEGEGWGLTSDDK-NLIMSDGS  149 (262)
T ss_pred             EEChHHhhh-----hcccccCCcceeeecCCc-ceEeeCCc
Confidence            777765331     223444444555555433 37776553

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=89.72  E-value=4.6  Score=44.52  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=18.2

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~  441 (507)
                      +.+.+..+|++++.+++..++++.+++..+.
T Consensus       442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~  472 (1041)
T KOG0243|consen  442 EKKEMAEQIEELEEELENLEKQLKDLTELYM  472 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555666666666666666666555544

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=89.71  E-value=4.8  Score=35.06  Aligned_cols=21  Identities=10%  Similarity=0.303  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      ..+.++.++++++..|+.+.+
T Consensus       165 aaqaQL~~lQ~qv~~Lq~q~~  185 (192)
T PF11180_consen  165 AAQAQLRQLQRQVRQLQRQAN  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            455666667777777666654

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=89.70  E-value=11  Score=32.27  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~  437 (507)
                      ...+.+++..+...+.+..+...+.....++.+..+.+.+.+-+++.
T Consensus        48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii   94 (156)
T CHL00118         48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI   94 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666666666555555555556666666665555544443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=89.56  E-value=4.9  Score=43.52  Aligned_cols=42  Identities=19%  Similarity=0.424  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  432 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~e  432 (507)
                      .+.++..+..++..+.....+.+.++.++++.+..+.+++.+
T Consensus       598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e  639 (769)
T PF05911_consen  598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE  639 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555554444444444444444444444444444333

The function of this family is unknown.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=89.52  E-value=2.7  Score=40.05  Aligned_cols=47  Identities=23%  Similarity=0.271  Sum_probs=23.7

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      ++.+..+++..+.++.-+.....-+.+.++.+++++++.+.+++++.
T Consensus        89 vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~  135 (302)
T PF09738_consen   89 VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY  135 (302)
T ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444455555555555555555555555554

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=89.49  E-value=13  Score=32.78  Aligned_cols=96  Identities=15%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHH----HHHHHHHhHHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQT  466 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~----e~~~~~~~~~~  466 (507)
                      +++|+.+.++.+..+.++...+..-+..+........+.+.+++.++.-++..+..+...+.-..    ++.++-+-++.
T Consensus        69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea  148 (188)
T PF05335_consen   69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA  148 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444433322    22233333334


Q ss_pred             HHHHHHHHHHhHHHHHHHHH
Q 010551          467 IENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       467 le~e~~~~~~~~~~~~~~~~  486 (507)
                      -.+.++.|++++.....+++
T Consensus       149 Ak~Rve~L~~QL~~Ar~D~~  168 (188)
T PF05335_consen  149 AKRRVEELQRQLQAARADYE  168 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44555556666555555544

>PF15233 SYCE1: Synaptonemal complex central element protein 1

Probab=89.42  E-value=10  Score=30.66  Aligned_cols=61  Identities=18%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             ccchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551          385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~  445 (507)
                      +.+...+..++.-++...+.+-+.+.-..-|+++++.+..+.-.+++-+...+.-+..++-
T Consensus         9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLql   69 (134)
T PF15233_consen    9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQL   69 (134)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444456666666666666666666666667777777766655555545544444444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=89.39  E-value=3.5  Score=45.45  Aligned_cols=30  Identities=13%  Similarity=0.254  Sum_probs=14.2

Q ss_pred             HHHHHHHhhhhHHHHhhhhhhHHHHHHhhc
Q 010551          395 KEDKRVLELSLTEVRTENSRFREKIDEVNS  424 (507)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  424 (507)
                      +++....|..+....++..+|...+++++.
T Consensus      1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444555555555555443

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=89.32  E-value=11  Score=32.83  Aligned_cols=50  Identities=10%  Similarity=0.171  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      ...|.+++..+...+........+....+.+.+.++.+.+.+.+.+..+-
T Consensus        44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a   93 (173)
T PRK13453         44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDA   93 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666666666555555555666666666666655555544433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=89.30  E-value=3.8  Score=47.61  Aligned_cols=33  Identities=12%  Similarity=0.264  Sum_probs=13.2

Q ss_pred             HHHHhhhhHHHHhhhhhhHHHHHHhhccchhHH
Q 010551          398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELS  430 (507)
Q Consensus       398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~  430 (507)
                      ..++++.+.........++..+...+.+++..+
T Consensus       623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~  655 (1201)
T PF12128_consen  623 QEELEKQLKQINKKIEELKREITQAEQELKQAE  655 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            333444433333344444444444444333333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=89.15  E-value=28  Score=35.43  Aligned_cols=140  Identities=12%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ..++.+|+.++.-+.+.   ..+. ........-++ +|++....++    .-++|.+|+.+.....+...   .  ...
T Consensus       228 ~~i~i~dl~tg~~~~l~---~~~g-~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~--~~~  294 (429)
T PRK01742        228 SQLVVHDLRSGARKVVA---SFRG-HNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSG---A--GNN  294 (429)
T ss_pred             cEEEEEeCCCCceEEEe---cCCC-ccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccC---C--CCc
Confidence            45999999988766654   2221 11111222244 4544332222    23589999988877666431   1  111


Q ss_pred             ceEEEEcCC-EEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEE
Q 010551          196 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~  274 (507)
                      .......++ .|++....++   ...+|.++.....-..+.  ..    .. .....-+++.+++.+.      ..++.+
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~--~~----~~-~~~~SpDG~~ia~~~~------~~i~~~  358 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG--GR----GY-SAQISADGKTLVMING------DNVVKQ  358 (429)
T ss_pred             CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec--CC----CC-CccCCCCCCEEEEEcC------CCEEEE
Confidence            222233344 3444332222   236888887665443331  10    11 1111223444444332      357889


Q ss_pred             ECCCCcEEEec
Q 010551          275 NMTKLAWSILT  285 (507)
Q Consensus       275 d~~~~~W~~v~  285 (507)
                      |+.+..+..+.
T Consensus       359 Dl~~g~~~~lt  369 (429)
T PRK01742        359 DLTSGSTEVLS  369 (429)
T ss_pred             ECCCCCeEEec
Confidence            99998887654

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.11  E-value=3.7  Score=40.43  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=13.7

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      ..++|..++........++.++.+..+.-+
T Consensus       294 yLaKL~~~l~~~~~~~~~ltqqwed~R~pl  323 (521)
T KOG1937|consen  294 YLAKLMGKLAELNKQMEELTQQWEDTRQPL  323 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            344444444444444444444444444433

>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A

Probab=89.03  E-value=16  Score=34.33  Aligned_cols=231  Identities=15%  Similarity=0.121  Sum_probs=104.9

Q ss_pred             CceEEeecCCCCC--CccccceEEEE--CCEEEEEc--CCCCCccCC-c-eEEEEcc-CCceeeeccccccCCCccccCC
Q 010551           13 DLWVTLPVSGARP--SPRYKHAAAVF--DQKLYIVG--GSRNGRFLS-D-VQVFDLR-SLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus        13 ~~W~~~~~~~~~p--~~r~~~~~~~~--~~~iyi~G--G~~~~~~~~-~-~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      ..|.....-...+  ..+.+..+++.  ++.|+++-  +........ . .+....+ -.+|.........        .
T Consensus        30 ~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~--------~  101 (275)
T PF13088_consen   30 KTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPG--------W  101 (275)
T ss_dssp             TEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHH--------C
T ss_pred             CeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccc--------c
Confidence            4698765421222  33444444443  78888875  221111111 1 1355555 3489876532210        0


Q ss_pred             CcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCC-cEEEeecCCCCCCCCcCc-EEEEE-CCEEEEEcCC
Q 010551           84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVMETSGKVPVTRGGH-SVTLV-GSRLIIFGGE  160 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~-~~~~~-~~~iy~~GG~  160 (507)
                      ....+.+-.+..+..-++.+++.. +.........+..|..+.+ +|+...+..  +...... +.+.. ++.|+++--.
T Consensus       102 ~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~  178 (275)
T PF13088_consen  102 FGNFSGPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRT  178 (275)
T ss_dssp             CCSCEECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEE
T ss_pred             ccceeccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEc
Confidence            000111122223444578887762 1111111334555666655 599887421  2212222 33333 4577776543


Q ss_pred             CCCCCccCcEEEEECC-CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCC
Q 010551          161 DRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       161 ~~~~~~~n~~~~~d~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      . ...  .-.+.+..+ -.+|+.+... .+|.+.....++...++.++++.........-.+++-.-...+|..+....+
T Consensus       179 ~-~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~  254 (275)
T PF13088_consen  179 E-GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDD  254 (275)
T ss_dssp             C-SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEE
T ss_pred             c-CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeC
Confidence            2 111  233444444 3469987643 3455555555555667677777763222111122222223567987543333


Q ss_pred             CCCCC-CccEEEEE-CCeEEE
Q 010551          240 LVTGR-AGHAGITI-DENWYI  258 (507)
Q Consensus       240 ~p~~r-~~~~~~~~-~~~l~v  258 (507)
                      .+... .+.+++.. +++|+|
T Consensus       255 ~~~~~~~Y~~~~~~~dg~l~i  275 (275)
T PF13088_consen  255 GPNGDSGYPSLTQLPDGKLYI  275 (275)
T ss_dssp             EE-CCEEEEEEEEEETTEEEE
T ss_pred             CCCCcEECCeeEEeCCCcCCC
Confidence            23222 33344555 457765

...

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.00  E-value=8  Score=33.78  Aligned_cols=7  Identities=43%  Similarity=0.657  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 010551          478 KSAFEQE  484 (507)
Q Consensus       478 ~~~~~~~  484 (507)
                      +..++++
T Consensus       181 ~s~LEeq  187 (193)
T PF14662_consen  181 KSRLEEQ  187 (193)
T ss_pred             HHHHHHH
Confidence            3333333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.98  E-value=6.2  Score=39.10  Aligned_cols=35  Identities=9%  Similarity=0.177  Sum_probs=17.0

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~  445 (507)
                      +...+.+.++.+..-+....+.|++-+.+.+.++-
T Consensus       384 EKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLql  418 (527)
T PF15066_consen  384 EKNDIEKTLQNLQEALANTQKHLQESRNEKETLQL  418 (527)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34444445555555555555555555544444433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=88.91  E-value=25  Score=34.57  Aligned_cols=120  Identities=14%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCC---CC
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---SS  114 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~  114 (507)
                      ..+|+.-.....- .+.+.++|..+++-...-+.+.               .||  +.+..-+..||+.-.+...   +.
T Consensus        13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~G~---------------~P~--~~~spDg~~lyva~~~~~R~~~G~   74 (352)
T TIGR02658        13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDGGF---------------LPN--PVVASDGSFFAHASTVYSRIARGK   74 (352)
T ss_pred             CEEEEECCccccc-CceEEEEECCCCEEEEEEEccC---------------CCc--eeECCCCCEEEEEeccccccccCC
Confidence            4467665532221 2789999998865433222221               123  2222335678888764221   22


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcC------cEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEE
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGG------HSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDA  182 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~------~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~  182 (507)
                      ..+.+.+||+.|.+-..--+.+  +.||..      ..+..-++ .||+. -.+    ..+.+.+.|+.+.+-..
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~----p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELP--EGPRFLVGTYPWMTSLTPDNKTLLFY-QFS----PSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccC--CCchhhccCccceEEECCCCCEEEEe-cCC----CCCEEEEEECCCCcEEE
Confidence            4567999999999866433322  333311      22222344 56654 222    14568888888877544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=88.87  E-value=27  Score=34.99  Aligned_cols=185  Identities=8%  Similarity=0.042  Sum_probs=98.3

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccce------------EEEECCEEEEEcCCCCCccCCceEEEEccCCceeeec
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHA------------AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLR   69 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~------------~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~   69 (507)
                      --+.|.|||.+.+-+.+..  .+|.-|..--            .+++++.++.+=-      ....+++++-.+---++.
T Consensus       286 ~GdIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS------RGkaFi~~~~~~~~iqv~  357 (668)
T COG4946         286 AGDIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS------RGKAFIMRPWDGYSIQVG  357 (668)
T ss_pred             CCcEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEEe------cCcEEEECCCCCeeEEcC
Confidence            3578999999999999986  4444432111            1223333332211      123555554333222222


Q ss_pred             cccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE
Q 010551           70 LETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL  149 (507)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~  149 (507)
                      ..                  .|..+.-...+++-+++|-..+     ..+.+||..++.-+.+.    .+.++.....+.
T Consensus       358 ~~------------------~~VrY~r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e----~~lg~I~av~vs  410 (668)
T COG4946         358 KK------------------GGVRYRRIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIE----KDLGNIEAVKVS  410 (668)
T ss_pred             CC------------------CceEEEEEccCCcceEEeccCC-----ceEEEEecCCceEEEee----CCccceEEEEEc
Confidence            11                  2344444444555677775543     24889999999877764    334443333333


Q ss_pred             ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceE--EEEcCCEEEEEcCCCCCCCCCcEEEEECC
Q 010551          150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA--ALHANRYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       150 ~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~--~~~~~~~l~v~GG~~~~~~~~~i~~~d~~  227 (507)
                      -+++..+.+-.      .-++|.+|+++++-+.+.-      .+.+...  +.+.+. -++.=+.-.+-.+..+.+||..
T Consensus       411 ~dGK~~vvaNd------r~el~vididngnv~~idk------S~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         411 PDGKKVVVAND------RFELWVIDIDNGNVRLIDK------SEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             CCCcEEEEEcC------ceEEEEEEecCCCeeEecc------cccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecC
Confidence            45554444432      2369999999988777743      1222111  112333 2333233344455678888887


Q ss_pred             CCcEEec
Q 010551          228 TNEWSQP  234 (507)
Q Consensus       228 ~~~W~~~  234 (507)
                      +++--.+
T Consensus       478 ~~Kiy~v  484 (668)
T COG4946         478 GGKIYDV  484 (668)
T ss_pred             CCeEEEe
Confidence            7665554

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=88.86  E-value=12  Score=32.64  Aligned_cols=49  Identities=8%  Similarity=0.180  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  439 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~  439 (507)
                      ...+.+++..+...+........+..+.+++.+.++++.+++.+++..+
T Consensus        44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~   92 (175)
T PRK14472         44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE   92 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666666666666666566666666666666666666655554443

>PHA02562 46 endonuclease subunit; Provisional

Probab=88.86  E-value=4.6  Score=42.80  Aligned_cols=11  Identities=9%  Similarity=0.277  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHH
Q 010551          391 IDAIKEDKRVL  401 (507)
Q Consensus       391 ~~~l~~~~~~~  401 (507)
                      +..++.+...+
T Consensus       308 i~~l~~~l~~l  318 (562)
T PHA02562        308 LKELQHSLEKL  318 (562)
T ss_pred             HHHHHHHHHHH
Confidence            44444444444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.85  E-value=8  Score=37.79  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=10.5

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHH
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~  436 (507)
                      ..-++..+++.+.++.++.+|..++
T Consensus        43 ~~ai~a~~~~~E~~l~~Lq~e~~~l   67 (459)
T KOG0288|consen   43 SRAIKAKLQEKELELNRLQEENTQL   67 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443333

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=88.81  E-value=12  Score=30.64  Aligned_cols=29  Identities=17%  Similarity=0.346  Sum_probs=15.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010551          458 QKMLESSQTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       458 ~~~~~~~~~le~e~~~~~~~~~~~~~~~~  486 (507)
                      .+...++..+..++..++.+++.+++.++
T Consensus        77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~  105 (126)
T PF13863_consen   77 EEKEAEIKKLKAELEELKSEISKLEEKLE  105 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=88.80  E-value=18  Score=32.91  Aligned_cols=139  Identities=18%  Similarity=0.227  Sum_probs=73.2

Q ss_pred             cEEEeecC--CCCCCCCcC-cEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCC
Q 010551          128 LCGVMETS--GKVPVTRGG-HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR  204 (507)
Q Consensus       128 ~W~~~~~~--g~~p~~r~~-~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~  204 (507)
                      .|+...|-  +..+.|-.+ +.+..-.|.|+..||-+       .+|..|+++++.+..--    -..-+-|+.+.-+.+
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~r----GHtDYvH~vv~R~~~  168 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYR----GHTDYVHSVVGRNAN  168 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEc----CCcceeeeeeecccC
Confidence            47665531  223333333 33333467888888732       48999999999876632    113445555543333


Q ss_pred             EEEEEcCCCCCCCCCcEEEEECCCCcEEec-cc--CCCCCCCCCcc--EEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQP-EI--KGDLVTGRAGH--AGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       205 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~-~~--~~~~p~~r~~~--~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      -=++-|+-++     .+.++|.++.+-.+. ..  ...+..|-.+-  .+...+...+|+||+-.      +-++++.+.
T Consensus       169 ~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrss  237 (325)
T KOG0649|consen  169 GQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRSS  237 (325)
T ss_pred             cceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccCC
Confidence            2445555443     477888888776553 11  11111221222  34445667778877543      335555554


Q ss_pred             cEEEeccCC
Q 010551          280 AWSILTSVK  288 (507)
Q Consensus       280 ~W~~v~~~~  288 (507)
                      +=+.+-++|
T Consensus       238 e~t~vfpip  246 (325)
T KOG0649|consen  238 ESTCVFPIP  246 (325)
T ss_pred             CceEEEecc
Confidence            444444443

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=88.62  E-value=13  Score=32.88  Aligned_cols=48  Identities=10%  Similarity=0.168  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~  438 (507)
                      ...+.+++..+...+........+..+.+.+.+..+++.+++.+++..
T Consensus        50 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~   97 (184)
T CHL00019         50 SDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRV   97 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666555555555555555555666555555555444433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=88.50  E-value=28  Score=34.68  Aligned_cols=145  Identities=15%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             ceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcC-cEEEEE--CCEEEEEcCCCCCCCccCc
Q 010551           93 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGG-HSVTLV--GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        93 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~--~~~iy~~GG~~~~~~~~n~  169 (507)
                      -++++..+.-.|++||.-.     -.+|.+.++|+.--.+-      .+.+. .++..+  ++..++-||.|+.      
T Consensus        84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~------~aHYQ~ITcL~fs~dgs~iiTgskDg~------  146 (476)
T KOG0646|consen   84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL------SAHYQSITCLKFSDDGSHIITGSKDGA------  146 (476)
T ss_pred             eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH------HhhccceeEEEEeCCCcEEEecCCCcc------
Confidence            4566666666778877321     23888888888532211      11111 133333  4577777887653      


Q ss_pred             EEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEE-EcCCCCC----CCCCcEEEEECCCCcEEecccCCCCCC
Q 010551          170 VHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIV-FGGCSHS----IFFNDLHVLDLQTNEWSQPEIKGDLVT  242 (507)
Q Consensus       170 ~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v-~GG~~~~----~~~~~i~~~d~~~~~W~~~~~~~~~p~  242 (507)
                      +..+.+.+--  -..-.+  .+...-..|++.+.  + +++ +||.+..    ..-+.+-+||++.+.--.     ....
T Consensus       147 V~vW~l~~lv~a~~~~~~--~p~~~f~~HtlsIT--D-l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-----ti~f  216 (476)
T KOG0646|consen  147 VLVWLLTDLVSADNDHSV--KPLHIFSDHTLSIT--D-LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-----TITF  216 (476)
T ss_pred             EEEEEEEeecccccCCCc--cceeeeccCcceeE--E-EEecCCCccceEEEecCCceEEEEEeccceeeE-----EEec
Confidence            4444432100  000000  11223345555442  2 333 4444322    111346677877764322     2233


Q ss_pred             CCCccEEEEE-CCeEEEEeccCC
Q 010551          243 GRAGHAGITI-DENWYIVGGGDN  264 (507)
Q Consensus       243 ~r~~~~~~~~-~~~l~v~GG~~~  264 (507)
                      |+.-+++++- .++.+.+|+..+
T Consensus       217 p~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcc
Confidence            4555555544 345556665443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=88.49  E-value=12  Score=33.31  Aligned_cols=8  Identities=13%  Similarity=0.169  Sum_probs=2.9

Q ss_pred             HHHhhccc
Q 010551          419 IDEVNSTH  426 (507)
Q Consensus       419 l~~~~~~~  426 (507)
                      |..+..++
T Consensus        63 l~~h~eEv   70 (194)
T PF15619_consen   63 LQRHNEEV   70 (194)
T ss_pred             HHHHHHHH
Confidence            33333333

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=88.46  E-value=3.3  Score=45.32  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551          450 LEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       450 ~e~~~~e~~~~~~~~~~le~e~~~~~~~~~  479 (507)
                      +++++++++.++...-+.+++..++.++.+
T Consensus       351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~  380 (726)
T PRK09841        351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVE  380 (726)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            333333333333333344444444444443

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=88.45  E-value=3.4  Score=30.28  Aligned_cols=16  Identities=25%  Similarity=0.559  Sum_probs=6.1

Q ss_pred             HHHHHHhHHHHHHHHH
Q 010551          471 VQILRQQKSAFEQEME  486 (507)
Q Consensus       471 ~~~~~~~~~~~~~~~~  486 (507)
                      +..+..+++..+.+++
T Consensus        49 ~~~l~~~~~~~e~~~~   64 (74)
T PF12329_consen   49 IKELKKKLEELEKELE   64 (74)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=88.42  E-value=3.1  Score=40.87  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=13.2

Q ss_pred             hhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551          410 TENSRFREKIDEVNSTHSELSKELSSVQGQ  439 (507)
Q Consensus       410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~  439 (507)
                      .+...|+.+|...+.++++..++.++.-.+
T Consensus        15 ~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~   44 (344)
T PF12777_consen   15 EQVEEMQEELEEKQPELEEKQKEAEELLEE   44 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444333333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=88.25  E-value=4  Score=42.92  Aligned_cols=10  Identities=30%  Similarity=0.441  Sum_probs=5.2

Q ss_pred             CCEEEEEecc
Q 010551          100 GTKLLILGGH  109 (507)
Q Consensus       100 ~~~lyv~GG~  109 (507)
                      +++--|+||+
T Consensus       215 ~dk~~VvGGy  224 (1259)
T KOG0163|consen  215 DDKGQVVGGY  224 (1259)
T ss_pred             cCCCceechh
Confidence            4444555554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=88.20  E-value=5.2  Score=44.56  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=13.1

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          439 QLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ....++++..+++.++.++++++..++
T Consensus       502 k~~~~~~~~~~l~~~~~~~~eele~~q  528 (1317)
T KOG0612|consen  502 KLSEEEAKKRKLEALVRQLEEELEDAQ  528 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444455555555555555444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.17  E-value=25  Score=33.73  Aligned_cols=244  Identities=12%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             CCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEcc-CCceeeeccccccCCCccccCCCcCCC
Q 010551           11 PYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVL   88 (507)
Q Consensus        11 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p   88 (507)
                      ....|..+..    |....-..+.++ .+.-|++|-.       .......+ -.+|.........             +
T Consensus         4 ~~~~W~~v~l----~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~-------------~   59 (302)
T PF14870_consen    4 SGNSWQQVSL----PTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDN-------------P   59 (302)
T ss_dssp             SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S---------------
T ss_pred             cCCCcEEeec----CCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCc-------------c
Confidence            4678999983    333344444444 5678888752       12222222 2479887643211             1


Q ss_pred             CCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCcc
Q 010551           89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLL  167 (507)
Q Consensus        89 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~  167 (507)
                      ......++...++..|++|-..       .+..-.-.-.+|+++...  .+.+-..+.+..+ ++.++++|..       
T Consensus        60 ~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~-------  123 (302)
T PF14870_consen   60 FDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR-------  123 (302)
T ss_dssp             ---EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT-------
T ss_pred             ceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------
Confidence            1122334445688899887421       133332245579998642  2222233444444 4577776643       


Q ss_pred             CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc
Q 010551          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  247 (507)
                      ..+++=.=.-.+|+.+...    ..-....+....++.+++++..+     +-+...|+-...|...    ..+..|.-.
T Consensus       124 G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~----~r~~~~riq  190 (302)
T PF14870_consen  124 GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPH----NRNSSRRIQ  190 (302)
T ss_dssp             --EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEE----E--SSS-EE
T ss_pred             CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEE----ccCccceeh
Confidence            2355444455689988642    12223334445677666666543     1223456767779875    334455555


Q ss_pred             EEEEE-CCeEEEEeccCCCCCcceEEEEE--CCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC
Q 010551          248 AGITI-DENWYIVGGGDNNNGCQETIVLN--MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  318 (507)
Q Consensus       248 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~d--~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~  318 (507)
                      +|... ++.++++.  .+.    .+..-+  -...+|.+-. .    |....++.+..+...+.+.+++.||..
T Consensus       191 ~~gf~~~~~lw~~~--~Gg----~~~~s~~~~~~~~w~~~~-~----~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  191 SMGFSPDGNLWMLA--RGG----QIQFSDDPDDGETWSEPI-I----PIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EEEE-TTS-EEEEE--TTT----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             hceecCCCCEEEEe--CCc----EEEEccCCCCcccccccc-C----CcccCceeeEEEEecCCCCEEEEeCCc
Confidence            55555 45676664  111    233333  3445677621 1    223335544445555556888888843

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=88.16  E-value=6.8  Score=40.33  Aligned_cols=10  Identities=30%  Similarity=0.338  Sum_probs=4.2

Q ss_pred             HHHHHHHhHH
Q 010551          470 EVQILRQQKS  479 (507)
Q Consensus       470 e~~~~~~~~~  479 (507)
                      +++-|.+++.
T Consensus       205 ~~q~Lleel~  214 (546)
T KOG0977|consen  205 RVQTLLEELA  214 (546)
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=88.12  E-value=15  Score=32.05  Aligned_cols=49  Identities=6%  Similarity=0.131  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  439 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~  439 (507)
                      ...|.+++..+...+.+..+...+..+.+.+.+..+++.+.+.+++..+
T Consensus        42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~   90 (173)
T PRK13460         42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAE   90 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666665555555555555666666666655555544443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=88.11  E-value=9.3  Score=35.13  Aligned_cols=16  Identities=13%  Similarity=0.200  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHhHHHH
Q 010551          466 TIENEVQILRQQKSAF  481 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~  481 (507)
                      .|+.++.++..++++.
T Consensus       113 ~Leqelkr~KsELErs  128 (307)
T PF10481_consen  113 KLEQELKRCKSELERS  128 (307)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.10  E-value=24  Score=33.33  Aligned_cols=136  Identities=18%  Similarity=0.175  Sum_probs=70.3

Q ss_pred             CCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE----CCEEEEEeccCCCCCCcceEEEEECCCC
Q 010551           52 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKKSSDSMIVRFIDLETN  127 (507)
Q Consensus        52 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~  127 (507)
                      .+.|..||..+++=+.+....-            ..+..-++-.+-.+    +|.||+.=+   ++...--+|..|..++
T Consensus        77 YSHVH~yd~e~~~VrLLWkesi------------h~~~~WaGEVSdIlYdP~~D~LLlAR~---DGh~nLGvy~ldr~~g  141 (339)
T PF09910_consen   77 YSHVHEYDTENDSVRLLWKESI------------HDKTKWAGEVSDILYDPYEDRLLLARA---DGHANLGVYSLDRRTG  141 (339)
T ss_pred             cceEEEEEcCCCeEEEEEeccc------------CCccccccchhheeeCCCcCEEEEEec---CCcceeeeEEEcccCC
Confidence            4679999999987554433221            11111122111111    567777533   2222445899999999


Q ss_pred             cEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcE--EEeccC----CCCCCCCCCceEEEE
Q 010551          128 LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW--DAVEVT----QTPPAPRYDHSAALH  201 (507)
Q Consensus       128 ~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W--~~~~~~----~~~p~~r~~~~~~~~  201 (507)
                      .=+.+.   .-|...   .+.+.+..+|   |......-.+.+.+||+.+++|  +..+..    |.....+....++.+
T Consensus       142 ~~~~L~---~~ps~K---G~~~~D~a~F---~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~  212 (339)
T PF09910_consen  142 KAEKLS---SNPSLK---GTLVHDYACF---GINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASA  212 (339)
T ss_pred             ceeecc---CCCCcC---ceEeeeeEEE---eccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEE
Confidence            888876   333331   1122222222   2222223357799999999999  444322    222223444455666


Q ss_pred             cCCEEEEEcC
Q 010551          202 ANRYLIVFGG  211 (507)
Q Consensus       202 ~~~~l~v~GG  211 (507)
                      .++.+..++|
T Consensus       213 ynR~faF~rG  222 (339)
T PF09910_consen  213 YNRLFAFVRG  222 (339)
T ss_pred             eeeEEEEEec
Confidence            5664444444

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=88.10  E-value=6.4  Score=34.61  Aligned_cols=6  Identities=17%  Similarity=0.135  Sum_probs=3.0

Q ss_pred             EEEECC
Q 010551          326 FVMRLK  331 (507)
Q Consensus       326 ~~~~~~  331 (507)
                      .-||+.
T Consensus        38 i~Ydl~   43 (195)
T PF12761_consen   38 IDYDLN   43 (195)
T ss_pred             cCcccc
Confidence            345554

>PRK10780 periplasmic chaperone; Provisional

Probab=88.04  E-value=7.9  Score=33.47  Aligned_cols=14  Identities=14%  Similarity=0.185  Sum_probs=5.1

Q ss_pred             HhhccchhHHHhHH
Q 010551          421 EVNSTHSELSKELS  434 (507)
Q Consensus       421 ~~~~~~~e~~~el~  434 (507)
                      ..+.+++....+++
T Consensus        54 ~~q~el~~~~~elq   67 (165)
T PRK10780         54 GRASELQRMETDLQ   67 (165)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=88.02  E-value=4.1  Score=39.57  Aligned_cols=14  Identities=7%  Similarity=0.157  Sum_probs=6.2

Q ss_pred             HHHHHHhHHHHHHH
Q 010551          471 VQILRQQKSAFEQE  484 (507)
Q Consensus       471 ~~~~~~~~~~~~~~  484 (507)
                      ++.++.+.+++...
T Consensus       255 i~~l~~EveRlrt~  268 (552)
T KOG2129|consen  255 IDKLQAEVERLRTY  268 (552)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444455444

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=87.95  E-value=15  Score=31.99  Aligned_cols=51  Identities=10%  Similarity=0.162  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~  441 (507)
                      ...|..++..+...+........+....+.+.+..+++.+++.+++..+-.
T Consensus        45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~   95 (174)
T PRK07352         45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAK   95 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777776666666666666666677777777766666555544443

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=87.88  E-value=3.6  Score=36.76  Aligned_cols=47  Identities=21%  Similarity=0.247  Sum_probs=23.5

Q ss_pred             hhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHH
Q 010551          438 GQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       438 ~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~  484 (507)
                      .++...+++..+++.++++.+.++...+    .++|+.+.++++-.++.++
T Consensus       151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee  201 (216)
T KOG1962|consen  151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE  201 (216)
T ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3444455555555555555555554444    4444444444444444433

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.88  E-value=6.4  Score=38.87  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=16.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010551          458 QKMLESSQTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       458 ~~~~~~~~~le~e~~~~~~~~~~~~~~~~  486 (507)
                      +++.+.+.+...+-.++|+|+.++...++
T Consensus       399 RKq~~DI~Kil~etreLqkq~ns~se~L~  427 (521)
T KOG1937|consen  399 RKQEQDIVKILEETRELQKQENSESEALN  427 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444555566666666665555543

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=87.84  E-value=14  Score=35.09  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=17.0

Q ss_pred             hhhhhhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHhH
Q 010551          444 RSRCFKLEAQIAELQKMLESSQ-----TIENEVQILRQQK  478 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~~~~~-----~le~e~~~~~~~~  478 (507)
                      .+++.+++.+-.+++.+|.+.|     +|.+++..+..++
T Consensus       112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~  151 (310)
T PF09755_consen  112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEK  151 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3344455554455555554433     5555555554433

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=87.78  E-value=16  Score=32.93  Aligned_cols=67  Identities=22%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHhhhh---hhhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHH
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAERSR---CFKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~~~~---~~~~e~~~~e~~~~~~~~~-----~le~e~~~~~~~~~~~~~~~  485 (507)
                      +..++.++-+.++++..++.+++.++.-   -...+.+++.+++++..++     .+.+...+..+++..+++++
T Consensus        49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~  123 (206)
T PF14988_consen   49 TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA  123 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444221   1233444555555554443     33344445555555666655

>PF14282 FlxA: FlxA-like protein

Probab=87.72  E-value=2.5  Score=33.46  Aligned_cols=15  Identities=40%  Similarity=0.439  Sum_probs=5.9

Q ss_pred             hhhHHHHHHHHHHHH
Q 010551          448 FKLEAQIAELQKMLE  462 (507)
Q Consensus       448 ~~~e~~~~e~~~~~~  462 (507)
                      +.|+.+|+.++.++.
T Consensus        54 q~Lq~QI~~LqaQI~   68 (106)
T PF14282_consen   54 QLLQAQIQQLQAQIA   68 (106)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444333333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.54  E-value=8.2  Score=42.19  Aligned_cols=7  Identities=29%  Similarity=0.392  Sum_probs=3.8

Q ss_pred             EEEccCC
Q 010551          312 VAFGGYN  318 (507)
Q Consensus       312 ~v~GG~~  318 (507)
                      .+.||..
T Consensus       660 tlTGGs~  666 (1174)
T KOG0933|consen  660 TLTGGSR  666 (1174)
T ss_pred             cccCCCC
Confidence            3457754

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=87.48  E-value=6.9  Score=36.47  Aligned_cols=46  Identities=13%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             HHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhH
Q 010551          406 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  451 (507)
Q Consensus       406 ~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e  451 (507)
                      .....+.+++++.+..+..+...++..++..+.+++..++|++-|+
T Consensus       172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq  217 (267)
T PF10234_consen  172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ  217 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555555555555555555555555555444

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>KOG3850 consensus Predicted membrane protein [Function unknown]

Probab=87.48  E-value=6.5  Score=37.92  Aligned_cols=26  Identities=19%  Similarity=0.288  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhccc
Q 010551          467 IENEVQILRQQKSAFEQEMERATSVQ  492 (507)
Q Consensus       467 le~e~~~~~~~~~~~~~~~~~~~~~~  492 (507)
                      .++.++-.+-++.++|-++++++-.|
T Consensus       351 IqEalEscqtrisKlEl~qq~qqv~Q  376 (455)
T KOG3850|consen  351 IQEALESCQTRISKLELQQQQQQVVQ  376 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555555444333333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=87.43  E-value=4.9  Score=47.20  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=14.6

Q ss_pred             HhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHH
Q 010551          421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  458 (507)
Q Consensus       421 ~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~  458 (507)
                      .+.+++++.+.+++..+.++...++++..++.++++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~  317 (1353)
T TIGR02680       280 QLSRDLGRARDELETAREEERELDARTEALEREADALR  317 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334333333333333333333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.31  E-value=8.5  Score=41.70  Aligned_cols=10  Identities=20%  Similarity=0.371  Sum_probs=7.1

Q ss_pred             ECCEEEEEcC
Q 010551           36 FDQKLYIVGG   45 (507)
Q Consensus        36 ~~~~iyi~GG   45 (507)
                      .++.||+|-+
T Consensus        40 ~d~~L~vWd~   49 (717)
T PF10168_consen   40 RDGDLFVWDS   49 (717)
T ss_pred             eCCEEEEEEC
Confidence            3777777766

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=87.23  E-value=4.8  Score=41.19  Aligned_cols=59  Identities=10%  Similarity=0.103  Sum_probs=26.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHhH-------HHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceeeee
Q 010551          444 RSRCFKLEAQIAELQKMLESS-------QTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWI  503 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~~~~-------~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~  503 (507)
                      +.++..++.++.+.++++...       ..|+++.+-.++..+.+.+.+++++. +.......|+=|
T Consensus       317 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l-~~~~~~~~~~Vi  382 (444)
T TIGR03017       317 KQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI-EAQSNQTDISIL  382 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCceEee
Confidence            344444444555444444433       34444444444444455555554442 233344455543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=87.17  E-value=10  Score=31.66  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 010551          466 TIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                      ++++++..++++++.+.+.++++
T Consensus       112 ~l~~~l~~~~~~~~~~~~~l~~l  134 (140)
T PRK03947        112 KLEEALQKLASRIAQLAQELQQL  134 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555443

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=87.11  E-value=14  Score=30.24  Aligned_cols=22  Identities=9%  Similarity=0.268  Sum_probs=8.3

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHH
Q 010551          440 LVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       440 ~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      +++..+..+..+.++.+.+..+
T Consensus        77 lDe~~ei~~~i~~eV~~v~~dv   98 (126)
T PF07889_consen   77 LDEQKEISKQIKDEVTEVREDV   98 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhH
Confidence            3333333333333444433333

The region featured in this family is approximately 100 amino acids long.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=86.94  E-value=3.4  Score=36.61  Aligned_cols=8  Identities=38%  Similarity=0.601  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010551          453 QIAELQKM  460 (507)
Q Consensus       453 ~~~e~~~~  460 (507)
                      ++.+++.+
T Consensus       118 ~~~~l~~e  125 (188)
T PF03962_consen  118 ELKELKKE  125 (188)
T ss_pred             HHHHHHHH
Confidence            33333333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.89  E-value=8.2  Score=42.03  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      ++.++..++..++..+++++.
T Consensus       353 ~l~~ee~~~~~rl~~l~~~~~  373 (1200)
T KOG0964|consen  353 SLVDEEKRLKKRLAKLEQKQR  373 (1200)
T ss_pred             HHHhHHHHHHHHHHHHHHHHH
Confidence            444555555555555555543

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=86.84  E-value=3.9  Score=39.11  Aligned_cols=10  Identities=10%  Similarity=0.318  Sum_probs=3.7

Q ss_pred             HHHHHHHhHH
Q 010551          470 EVQILRQQKS  479 (507)
Q Consensus       470 e~~~~~~~~~  479 (507)
                      +.++++...+
T Consensus       141 q~~qLe~d~q  150 (319)
T PF09789_consen  141 QIEQLERDLQ  150 (319)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=86.65  E-value=6  Score=30.71  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      .|.=..+||-++.+.+..+++
T Consensus        51 SL~FrN~QL~kRV~~LQ~El~   71 (102)
T PF10205_consen   51 SLTFRNQQLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444443

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=86.47  E-value=19  Score=31.89  Aligned_cols=16  Identities=19%  Similarity=0.580  Sum_probs=6.8

Q ss_pred             HHHHHHHhHHHHHHHH
Q 010551          470 EVQILRQQKSAFEQEM  485 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~  485 (507)
                      +++.+.++.+++..++
T Consensus       171 ei~~lk~~~~ql~~~l  186 (189)
T PF10211_consen  171 EIDFLKKQNQQLKAQL  186 (189)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444444

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=86.46  E-value=15  Score=31.83  Aligned_cols=28  Identities=11%  Similarity=-0.009  Sum_probs=11.7

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHhhhh
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAERSR  446 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~~~~  446 (507)
                      ++.+-.++..++..-+..+.+++++++-
T Consensus        50 lQ~hl~EIR~LKe~NqkLqedNqELRdL   77 (195)
T PF10226_consen   50 LQQHLNEIRGLKEVNQKLQEDNQELRDL   77 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334434433344444444444443

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.41  E-value=8.1  Score=42.07  Aligned_cols=81  Identities=20%  Similarity=0.343  Sum_probs=42.1

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH----HHHHHHHHhHHHHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE----NEVQILRQQKSAFEQEME  486 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le----~e~~~~~~~~~~~~~~~~  486 (507)
                      +.+.++.+++.++.++++...+++.+...+...+.+..++-....++++++.+.+...    +|..+++..+..+++.+.
T Consensus       412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~  491 (1200)
T KOG0964|consen  412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLS  491 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555455555555555555555555554222    344455555555566655


Q ss_pred             Hhhcc
Q 010551          487 RATSV  491 (507)
Q Consensus       487 ~~~~~  491 (507)
                      .++..
T Consensus       492 ~~~~~  496 (1200)
T KOG0964|consen  492 RAEKN  496 (1200)
T ss_pred             HHHHH
Confidence            44433

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=86.40  E-value=7.7  Score=34.33  Aligned_cols=58  Identities=24%  Similarity=0.363  Sum_probs=27.8

Q ss_pred             HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHH
Q 010551          430 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       430 ~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      ++++.+...++.+..+...++++.+.+++++.+.+.    ...+++.++....+.+.++++.
T Consensus       116 e~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~  177 (190)
T PF05266_consen  116 EKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN  177 (190)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444555555566666666555533332    3334455554444455554443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=86.34  E-value=33  Score=33.11  Aligned_cols=156  Identities=11%  Similarity=0.042  Sum_probs=81.3

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC-
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR-  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r-  193 (507)
                      .+.+..|++..+.-+...+.--.|..-.-|.+.--++ .+|++.=.++    .-+++.||...++...+.+...+|..- 
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s----tV~v~~y~~~~g~~~~lQ~i~tlP~dF~  241 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS----TVDVLEYNPAVGKFEELQTIDTLPEDFT  241 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC----EEEEEEEcCCCceEEEeeeeccCccccC
Confidence            5668999998887666543312222222233333333 5677765543    335777888888888887665454332 


Q ss_pred             --CCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEEC--CCCcEEeccc---CCCCCCCCCccEEEEECCeEEEEeccCC
Q 010551          194 --YDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDL--QTNEWSQPEI---KGDLVTGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       194 --~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~--~~~~W~~~~~---~~~~p~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                        ...+++.+  ++++||+.     +...+.|..|.+  .+++-..+..   -+..  ||. |.+..-++.|++. +..+
T Consensus       242 g~~~~aaIhis~dGrFLYas-----NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~--PR~-F~i~~~g~~Liaa-~q~s  312 (346)
T COG2706         242 GTNWAAAIHISPDGRFLYAS-----NRGHDSIAVFSVDPDGGKLELVGITPTEGQF--PRD-FNINPSGRFLIAA-NQKS  312 (346)
T ss_pred             CCCceeEEEECCCCCEEEEe-----cCCCCeEEEEEEcCCCCEEEEEEEeccCCcC--Ccc-ceeCCCCCEEEEE-ccCC
Confidence              22223222  45667773     333456666654  4444333221   2332  343 2323333444444 3333


Q ss_pred             CCCcceEEEEECCCCcEEEecc
Q 010551          265 NNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       265 ~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      +  .-.++..|.+++.-+.+..
T Consensus       313 d--~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         313 D--NITVFERDKETGRLTLLGR  332 (346)
T ss_pred             C--cEEEEEEcCCCceEEeccc
Confidence            2  2456677888888777644

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=86.23  E-value=2.8  Score=43.76  Aligned_cols=19  Identities=11%  Similarity=0.352  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHhHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~  484 (507)
                      +++.+.++++++...+++.
T Consensus       241 ~l~~~~~~~~~~~~~lk~a  259 (555)
T TIGR03545       241 DLQNDKKQLKADLAELKKA  259 (555)
T ss_pred             HHHHhHHHHHHHHHHHHhc
Confidence            4444444444444444333

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.09  E-value=8.7  Score=28.12  Aligned_cols=41  Identities=24%  Similarity=0.240  Sum_probs=17.4

Q ss_pred             HHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHH
Q 010551          420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       420 ~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      .+...++.++..+-+............+.+|...+.+.+.+
T Consensus         8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~   48 (74)
T PF12329_consen    8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ   48 (74)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33333333343333333333334444444555444444443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=86.08  E-value=13  Score=33.86  Aligned_cols=44  Identities=23%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS  434 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~  434 (507)
                      +..++......+..+.........+++++++.+...+++++..+
T Consensus        32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~   75 (221)
T PF04012_consen   32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE   75 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555556666667777777776666655533

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR00606 rad50 rad50

Probab=86.07  E-value=5.9  Score=46.61  Aligned_cols=8  Identities=38%  Similarity=0.451  Sum_probs=3.5

Q ss_pred             CEEEEEcC
Q 010551           38 QKLYIVGG   45 (507)
Q Consensus        38 ~~iyi~GG   45 (507)
                      ..++++-|
T Consensus        28 ~~~~~I~G   35 (1311)
T TIGR00606        28 SPLTILVG   35 (1311)
T ss_pred             cceEEEEC
Confidence            33444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=86.06  E-value=19  Score=33.61  Aligned_cols=45  Identities=9%  Similarity=0.209  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS  435 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~  435 (507)
                      ...+.+++..+...+........+.++..++.+.++++.+++.++
T Consensus        31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~   75 (250)
T PRK14474         31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS   75 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555544445555555555555555444433

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=86.03  E-value=19  Score=33.86  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 010551          466 TIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                      .++..+.|++.+---+.++|+++
T Consensus       218 s~eERL~QlqsEN~LLrQQLddA  240 (305)
T PF14915_consen  218 SLEERLSQLQSENMLLRQQLDDA  240 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444555443

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=86.02  E-value=13  Score=34.49  Aligned_cols=43  Identities=12%  Similarity=0.156  Sum_probs=22.3

Q ss_pred             hhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          422 VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       422 ~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ++.+.+..++.+...+.+++.+++.+.+.|..++|.++++...
T Consensus       191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~  233 (269)
T PF05278_consen  191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM  233 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555555555555555555555555554433

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=85.91  E-value=21  Score=31.44  Aligned_cols=47  Identities=9%  Similarity=0.161  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhh
Q 010551          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  439 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~  439 (507)
                      .|.+++..+...+.+..+...+..+.+.+.+.++++.+.+-+++..+
T Consensus        55 ~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~  101 (184)
T PRK13455         55 MLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA  101 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555556655555555555555566666666666665555554443

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=85.82  E-value=30  Score=32.21  Aligned_cols=164  Identities=16%  Similarity=0.080  Sum_probs=87.2

Q ss_pred             CCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCcee---eeccccccCCCccccCCCcCCCCCccce---eEEE
Q 010551           25 PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS---NLRLETELDADKTEDSGLLEVLPPMSDH---CMVK   98 (507)
Q Consensus        25 p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~~~~~~~~~~~~~~~~~p~~r~~~---~~~~   98 (507)
                      |.+-.|.+.++.++.||.--.     .++.+..||+.+.+=.   .++.....          ...|-...++   -.++
T Consensus        66 p~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~----------n~~~y~~~~~t~iD~Av  130 (250)
T PF02191_consen   66 PYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYN----------NRFPYYWSGYTDIDFAV  130 (250)
T ss_pred             eceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccc----------cccceecCCCceEEEEE
Confidence            334445555566666665432     3678999999998755   33322110          0112122222   2333


Q ss_pred             ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551           99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus        99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      -++-|+++=....... .-.+-..|+.+..-.+-=.+ ..+.+..+.+ ..+=|.||+....+...  ..-.+.||+.++
T Consensus       131 DE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T-~~~k~~~~na-FmvCGvLY~~~s~~~~~--~~I~yafDt~t~  205 (250)
T PF02191_consen  131 DENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNT-SYPKRSAGNA-FMVCGVLYATDSYDTRD--TEIFYAFDTYTG  205 (250)
T ss_pred             cCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEe-ccCchhhcce-eeEeeEEEEEEECCCCC--cEEEEEEECCCC
Confidence            3555666544332221 23466677776643322111 2344444433 33346777776665432  345788999988


Q ss_pred             cEEEeccCCCCCCCCCCceEEEEc--CCEEEEEc
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFG  210 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~G  210 (507)
                      +=..+..  +.+.+-..++++.++  ++.||++-
T Consensus       206 ~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd  237 (250)
T PF02191_consen  206 KEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD  237 (250)
T ss_pred             ceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence            7766654  355555566666664  56788864

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.74  E-value=12  Score=39.99  Aligned_cols=47  Identities=13%  Similarity=0.177  Sum_probs=26.6

Q ss_pred             HHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHH
Q 010551          408 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI  454 (507)
Q Consensus       408 ~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~  454 (507)
                      ...+.+.+++...+++.++++++.++++...+.+++++....++.++
T Consensus       669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL  715 (970)
T KOG0946|consen  669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL  715 (970)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33455556666666666666666666666555555555554444433

>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []

Probab=85.71  E-value=16  Score=30.55  Aligned_cols=56  Identities=4%  Similarity=0.092  Sum_probs=30.1

Q ss_pred             hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ....+++..++...++.+.......++..+.+..++.+.+++.++.+.++..+..+
T Consensus        60 ~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~  115 (139)
T PF05615_consen   60 FSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE  115 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555555555555555555555555555444444444

This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=85.64  E-value=14  Score=38.69  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=15.5

Q ss_pred             hhhHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHH
Q 010551          448 FKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAF  481 (507)
Q Consensus       448 ~~~e~~~~e~~~~~~~~~--------~le~e~~~~~~~~~~~  481 (507)
                      +.+=+++.++++.|+..+        .+--|+.+++++++..
T Consensus       583 ~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaa  624 (961)
T KOG4673|consen  583 SMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAA  624 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555544433        2223455555555433

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=85.45  E-value=3.6  Score=40.42  Aligned_cols=55  Identities=25%  Similarity=0.310  Sum_probs=36.5

Q ss_pred             hHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551          405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  459 (507)
Q Consensus       405 ~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~  459 (507)
                      +.....+..-++..+++++.++++.+++|+..+.++...++++..++.+.++..+
T Consensus       209 Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~  263 (344)
T PF12777_consen  209 YYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQK  263 (344)
T ss_dssp             HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344456666777777777777777777777777777777766666655554433

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.45  E-value=5.2  Score=34.76  Aligned_cols=19  Identities=37%  Similarity=0.433  Sum_probs=7.7

Q ss_pred             hhhhhHHHHHHHHHHHHhH
Q 010551          446 RCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       446 ~~~~~e~~~~e~~~~~~~~  464 (507)
                      .+.+++.++.+++.+|..+
T Consensus       117 ~i~~l~~e~~~l~~kL~~l  135 (169)
T PF07106_consen  117 EIEELEEEIEELEEKLEKL  135 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=85.36  E-value=18  Score=35.90  Aligned_cols=17  Identities=18%  Similarity=0.139  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 010551          466 TIENEVQILRQQKSAFE  482 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~  482 (507)
                      +++.-++-.+-++.++|
T Consensus       302 di~E~~Es~qtRisklE  318 (395)
T PF10267_consen  302 DIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44445555566666666

Its function is unknown.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=85.34  E-value=9.8  Score=26.57  Aligned_cols=13  Identities=23%  Similarity=0.094  Sum_probs=4.6

Q ss_pred             HHhhHHHhhhhhh
Q 010551          436 VQGQLVAERSRCF  448 (507)
Q Consensus       436 ~~~~~~~~~~~~~  448 (507)
                      ++..+...+.+++
T Consensus        23 vk~~n~~~e~kLq   35 (61)
T PF08826_consen   23 VKSANLAFESKLQ   35 (61)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised

Probab=85.31  E-value=0.26  Score=49.91  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELS  434 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~  434 (507)
                      |+..|++.|....+.++|.|++|.
T Consensus       377 EI~~LkErL~~S~rkLeEyErrLl  400 (495)
T PF12004_consen  377 EIQSLKERLRMSHRKLEEYERRLL  400 (495)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444443

This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.28  E-value=44  Score=33.58  Aligned_cols=173  Identities=18%  Similarity=0.172  Sum_probs=86.9

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCC
Q 010551           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~  115 (507)
                      .++.++++|+.+.     .+-.+|..+.. ......+              +.-....-++...+++|++-||++..   
T Consensus       121 ~d~t~l~s~sDd~-----v~k~~d~s~a~-v~~~l~~--------------htDYVR~g~~~~~~~hivvtGsYDg~---  177 (487)
T KOG0310|consen  121 QDNTMLVSGSDDK-----VVKYWDLSTAY-VQAELSG--------------HTDYVRCGDISPANDHIVVTGSYDGK---  177 (487)
T ss_pred             cCCeEEEecCCCc-----eEEEEEcCCcE-EEEEecC--------------CcceeEeeccccCCCeEEEecCCCce---
Confidence            4788888887432     24455555544 2222221              11122333455568899999998764   


Q ss_pred             cceEEEEECCCC-cEEEeecCCCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          116 SMIVRFIDLETN-LCGVMETSGKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                         +-.||+.+. .|..--.- ..|..    .++.+ + ..|...||        |.+-++|+.++.=        ++..
T Consensus       178 ---vrl~DtR~~~~~v~elnh-g~pVe----~vl~lpsgs~iasAgG--------n~vkVWDl~~G~q--------ll~~  233 (487)
T KOG0310|consen  178 ---VRLWDTRSLTSRVVELNH-GCPVE----SVLALPSGSLIASAGG--------NSVKVWDLTTGGQ--------LLTS  233 (487)
T ss_pred             ---EEEEEeccCCceeEEecC-CCcee----eEEEcCCCCEEEEcCC--------CeEEEEEecCCce--------ehhh
Confidence               777887776 44322111 11211    22222 2 34444555        4577777764331        1212


Q ss_pred             CCCc-----eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCC
Q 010551          193 RYDH-----SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNN  265 (507)
Q Consensus       193 r~~~-----~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~  265 (507)
                      +..|     ++....++.-++-||.+.     .+-+||+.  .|..+.. -..|.|.-  ++++. ++..+++|+.++.
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~t--~~Kvv~s-~~~~~pvL--siavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFDTT--NYKVVHS-WKYPGPVL--SIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             hhcccceEEEEEeecCCceEeeccccc-----ceEEEEcc--ceEEEEe-eeccccee--eEEecCCCceEEEecccce
Confidence            2212     233344555677777654     46788844  3444321 12222322  22222 6788888886653

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=85.25  E-value=21  Score=29.81  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~  438 (507)
                      ...|.+++..+...+........+....+.+.+..+++.+.+-..+..
T Consensus        31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~   78 (140)
T PRK07353         31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIA   78 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666666666666656666666666666666666555444443

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=85.17  E-value=4.7  Score=37.14  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=10.0

Q ss_pred             HHHHHHHhHHHHHHHHHHh
Q 010551          470 EVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~~~  488 (507)
                      .+...+++++.+.+-.|=+
T Consensus       153 DINiQN~KLEsLLqsMElA  171 (305)
T PF15290_consen  153 DINIQNKKLESLLQSMELA  171 (305)
T ss_pred             hhhhhHhHHHHHHHHHHHH
Confidence            3444455566666655533

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=85.12  E-value=23  Score=30.19  Aligned_cols=50  Identities=12%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      ...+..++..+...+........+.+..+.+.+..+++.+.+..++..+.
T Consensus        30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a   79 (156)
T PRK05759         30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQA   79 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666666666666666666666666666666666555554433

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.10  E-value=28  Score=31.88  Aligned_cols=38  Identities=21%  Similarity=0.126  Sum_probs=16.9

Q ss_pred             HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHH
Q 010551          418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA  455 (507)
Q Consensus       418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~  455 (507)
                      -|++...+.+++..|.....++|.+....+..+|..+.
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk   70 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK   70 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=85.09  E-value=24  Score=30.52  Aligned_cols=48  Identities=13%  Similarity=0.115  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~  438 (507)
                      ...+.+++..+...+........+....+.+.+..+.+.+++-+++..
T Consensus        48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~   95 (167)
T PRK08475         48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVE   95 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566666666666665555555655566666666665555444443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=85.06  E-value=15  Score=40.69  Aligned_cols=28  Identities=11%  Similarity=0.285  Sum_probs=14.9

Q ss_pred             HHHhhhhhhHHHHHHhhccchhHHHhHH
Q 010551          407 EVRTENSRFREKIDEVNSTHSELSKELS  434 (507)
Q Consensus       407 ~~~~~~~~l~~~l~~~~~~~~e~~~el~  434 (507)
                      ......+++..+++.++.++.+....+.
T Consensus       445 ~~~~~ieele~el~~~~~~l~~~~e~~~  472 (1041)
T KOG0243|consen  445 EMAEQIEELEEELENLEKQLKDLTELYM  472 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555555556666555555544443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.03  E-value=45  Score=33.50  Aligned_cols=88  Identities=13%  Similarity=0.094  Sum_probs=45.2

Q ss_pred             cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc-----EEecccCCCCCCCCCcc-EEEEE
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-----WSQPEIKGDLVTGRAGH-AGITI  252 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-----W~~~~~~~~~p~~r~~~-~~~~~  252 (507)
                      .|+.+..    +.++...++....++.+++.|..+      .++.-+-....     |..+    +.+..+... ++...
T Consensus       271 ~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~----~~~~~~~~l~~v~~~  336 (398)
T PLN00033        271 YWQPHNR----ASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEA----DIKSRGFGILDVGYR  336 (398)
T ss_pred             ceEEecC----CCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeec----ccCCCCcceEEEEEc
Confidence            4898863    444555555555667688877543      23333323333     4442    222223222 23333


Q ss_pred             -CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          253 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                       ++.++++|...      -++.-...-.+|+.+..
T Consensus       337 ~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~  365 (398)
T PLN00033        337 SKKEAWAAGGSG------ILLRSTDGGKSWKRDKG  365 (398)
T ss_pred             CCCcEEEEECCC------cEEEeCCCCcceeEccc
Confidence             45787777532      13444455678998753

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=85.01  E-value=22  Score=33.11  Aligned_cols=47  Identities=15%  Similarity=0.265  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~  437 (507)
                      ...+.+++..+...+........+....+.+.+..+++.+++.+++.
T Consensus        31 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~   77 (246)
T TIGR03321        31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLL   77 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566555555555555555555555555555544444433

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF15556 Zwint: ZW10 interactor

Probab=84.88  E-value=26  Score=30.72  Aligned_cols=12  Identities=25%  Similarity=0.340  Sum_probs=4.6

Q ss_pred             HHHHHHHhHHHH
Q 010551          470 EVQILRQQKSAF  481 (507)
Q Consensus       470 e~~~~~~~~~~~  481 (507)
                      +++.+.+++..+
T Consensus       156 eLe~l~qeL~~l  167 (252)
T PF15556_consen  156 ELERLYQELGTL  167 (252)
T ss_pred             HHHHHHHHHHHH
Confidence            333344433333

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=84.88  E-value=13  Score=34.58  Aligned_cols=11  Identities=0%  Similarity=0.169  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHH
Q 010551          391 IDAIKEDKRVL  401 (507)
Q Consensus       391 ~~~l~~~~~~~  401 (507)
                      ++.+...+.+.
T Consensus       321 qet~eaKr~e~  331 (406)
T KOG3859|consen  321 QETYEAKRNEF  331 (406)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=84.87  E-value=40  Score=32.76  Aligned_cols=110  Identities=14%  Similarity=0.148  Sum_probs=58.4

Q ss_pred             CCCCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCC----CCCccCCceEEEEccCCc--eee-ecccc
Q 010551            1 MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGS----RNGRFLSDVQVFDLRSLA--WSN-LRLET   72 (507)
Q Consensus         1 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~----~~~~~~~~~~~~d~~~~~--W~~-~~~~~   72 (507)
                      |.+.+++||..+.+-.=.     .+.+-.++.+..- +..+|+..-+    ..+..++-+.+||+.|..  ++. +|..+
T Consensus        15 ~~~rv~viD~d~~k~lGm-----i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~   89 (342)
T PF06433_consen   15 MTSRVYVIDADSGKLLGM-----IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP   89 (342)
T ss_dssp             SSEEEEEEETTTTEEEEE-----EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred             ccceEEEEECCCCcEEEE-----eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence            345678888888775433     3334444444333 5678876642    234556678999999874  433 22210


Q ss_pred             ccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           73 ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        73 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..           -..+.+...++..-|..+||+ -.    .+..++-+-|+..++.-.
T Consensus        90 R~-----------~~~~~~~~~~ls~dgk~~~V~-N~----TPa~SVtVVDl~~~kvv~  132 (342)
T PF06433_consen   90 RA-----------QVVPYKNMFALSADGKFLYVQ-NF----TPATSVTVVDLAAKKVVG  132 (342)
T ss_dssp             B-------------BS--GGGEEE-TTSSEEEEE-EE----SSSEEEEEEETTTTEEEE
T ss_pred             hh-----------eecccccceEEccCCcEEEEE-cc----CCCCeEEEEECCCCceee
Confidence            00           001112222222224556666 11    236689999999998654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=84.78  E-value=21  Score=32.52  Aligned_cols=14  Identities=29%  Similarity=0.536  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHhHH
Q 010551          466 TIENEVQILRQQKS  479 (507)
Q Consensus       466 ~le~e~~~~~~~~~  479 (507)
                      .|+.++.++..+++
T Consensus       124 ~Le~Ki~e~~~~~~  137 (225)
T COG1842         124 ALEQKIAELRAKKE  137 (225)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444444

>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]

Probab=84.71  E-value=3.8  Score=38.45  Aligned_cols=58  Identities=16%  Similarity=0.276  Sum_probs=44.7

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE  468 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le  468 (507)
                      +...|+-.|++.+.++.+..++-++...+++.++..+.-|+.+.+|+++.+++.++|-
T Consensus       148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeli  205 (405)
T KOG2010|consen  148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELI  205 (405)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777778888888888888888888888888888888888888877766443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=84.70  E-value=71  Score=35.53  Aligned_cols=101  Identities=11%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +..++.|+.+      ..+.+||..++.-.... .+   ....-.+++..  ++.+++.||.++      .+.+||+.+.
T Consensus       545 ~~~las~~~D------g~v~lWd~~~~~~~~~~-~~---H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~  608 (793)
T PLN00181        545 KSQVASSNFE------GVVQVWDVARSQLVTEM-KE---HEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG  608 (793)
T ss_pred             CCEEEEEeCC------CeEEEEECCCCeEEEEe-cC---CCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence            3455555542      24888898876532221 01   11111222222  456777787653      4888888765


Q ss_pred             cEE-EeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          179 TWD-AVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       179 ~W~-~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      .-. .+..       ......+.+  .++.+++.|+.+     +.+.+||+.+.
T Consensus       609 ~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~  650 (793)
T PLN00181        609 VSIGTIKT-------KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNP  650 (793)
T ss_pred             cEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence            422 2211       111122222  245577777654     36889998654

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=84.68  E-value=5.7  Score=32.38  Aligned_cols=15  Identities=27%  Similarity=0.492  Sum_probs=6.3

Q ss_pred             hHHHHHHhhccchhH
Q 010551          415 FREKIDEVNSTHSEL  429 (507)
Q Consensus       415 l~~~l~~~~~~~~e~  429 (507)
                      |.+.|+.+...+++.
T Consensus        66 LsqRId~vd~klDe~   80 (126)
T PF07889_consen   66 LSQRIDRVDDKLDEQ   80 (126)
T ss_pred             HHHHHHHHHhhHHHH
Confidence            334444444444433

The region featured in this family is approximately 100 amino acids long.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=84.57  E-value=19  Score=28.91  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      .|++..+.++++++.+...+.
T Consensus        88 tLekQe~~l~e~l~eLq~~i~  108 (119)
T COG1382          88 TLEKQEEKLQERLEELQSEIQ  108 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

>TIGR02977 phageshock_pspA phage shock protein A

Probab=84.55  E-value=19  Score=32.72  Aligned_cols=29  Identities=0%  Similarity=0.227  Sum_probs=14.0

Q ss_pred             hhHHHHhhhhhhHHHHHHhhccchhHHHh
Q 010551          404 SLTEVRTENSRFREKIDEVNSTHSELSKE  432 (507)
Q Consensus       404 ~~~~~~~~~~~l~~~l~~~~~~~~e~~~e  432 (507)
                      .+.........+++++.+.....++++..
T Consensus        46 ~lA~~~a~~k~~e~~~~~~~~~~~~~~~~   74 (219)
T TIGR02977        46 TSARTIADKKELERRVSRLEAQVADWQEK   74 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444555555555555555433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.45  E-value=6.8  Score=34.05  Aligned_cols=13  Identities=8%  Similarity=0.266  Sum_probs=5.1

Q ss_pred             hhhhhHHHHHHhh
Q 010551          411 ENSRFREKIDEVN  423 (507)
Q Consensus       411 ~~~~l~~~l~~~~  423 (507)
                      +...|+.++..+.
T Consensus        94 ~~k~l~~eL~~L~  106 (169)
T PF07106_consen   94 EVKSLEAELASLS  106 (169)
T ss_pred             HHHHHHHHHHHHh
Confidence            3333443343333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK11519 tyrosine kinase; Provisional

Probab=84.43  E-value=8.3  Score=42.19  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=13.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551          450 LEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       450 ~e~~~~e~~~~~~~~~~le~e~~~~~~~~~  479 (507)
                      +++++.+++.+...+.+.+++..+++++.+
T Consensus       351 L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~  380 (719)
T PRK11519        351 LEDEKAKLNGRVTAMPKTQQEIVRLTRDVE  380 (719)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            333444444444444344444444444443

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.39  E-value=8.6  Score=34.03  Aligned_cols=69  Identities=16%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHH----HHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ----KMLESSQTIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~----~~~~~~~~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      ...++.++.+.+.++.....+...++.++.+++++.+.+.    ....++..++...+.+.++....+.+.+.
T Consensus       112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~  184 (190)
T PF05266_consen  112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS  184 (190)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334443333444444444455555555554433333    22344457778888888888877777654

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=84.31  E-value=17  Score=32.21  Aligned_cols=8  Identities=50%  Similarity=0.733  Sum_probs=2.9

Q ss_pred             hhHHHHHH
Q 010551          449 KLEAQIAE  456 (507)
Q Consensus       449 ~~e~~~~e  456 (507)
                      +|+.++.+
T Consensus       138 ~L~~~~~~  145 (189)
T PF10211_consen  138 ELEKQVQE  145 (189)
T ss_pred             HHHHHHHH
Confidence            33333333

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=84.26  E-value=17  Score=36.12  Aligned_cols=13  Identities=31%  Similarity=0.501  Sum_probs=5.2

Q ss_pred             hhHHHHhhhhhhH
Q 010551          404 SLTEVRTENSRFR  416 (507)
Q Consensus       404 ~~~~~~~~~~~l~  416 (507)
                      .+++.+.+++.|+
T Consensus       405 ~LqEsr~eKetLq  417 (527)
T PF15066_consen  405 HLQESRNEKETLQ  417 (527)
T ss_pred             HHHHHHhhHHHHH
Confidence            3334444444443

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=84.21  E-value=17  Score=33.76  Aligned_cols=44  Identities=11%  Similarity=0.182  Sum_probs=22.2

Q ss_pred             cchhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhH
Q 010551          386 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       386 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~  429 (507)
                      +.+..++++..-+.-+++.+....-...+|..++...-+.++..
T Consensus       224 DWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SR  267 (384)
T KOG0972|consen  224 DWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASR  267 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666555555544444444555554444444444333

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=84.18  E-value=9.8  Score=38.66  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=8.5

Q ss_pred             HhhHHHhhhhhhhhHHHHHHHHH
Q 010551          437 QGQLVAERSRCFKLEAQIAELQK  459 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e~~~~e~~~  459 (507)
                      +.+++.++.....|+.+-|.+++
T Consensus       645 Ree~eRl~~erlrle~qRQrLER  667 (940)
T KOG4661|consen  645 REELERLKAERLRLERQRQRLER  667 (940)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=84.06  E-value=5.6  Score=35.62  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=8.6

Q ss_pred             HhhHHHhhhhhhhhHHHHHHHHH
Q 010551          437 QGQLVAERSRCFKLEAQIAELQK  459 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e~~~~e~~~  459 (507)
                      +.++++.+.+++..+.+..++++
T Consensus       164 ~~el~~~~~~Le~~~~~~~al~K  186 (216)
T KOG1962|consen  164 ETELEKKQKKLEKAQKKVDALKK  186 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.97  E-value=34  Score=31.35  Aligned_cols=41  Identities=10%  Similarity=0.137  Sum_probs=21.2

Q ss_pred             hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  450 (507)
Q Consensus       410 ~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~  450 (507)
                      .-+.+++++++.+..+.....++|+++.+....+...+...
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa   72 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA   72 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555666555555554444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=83.93  E-value=20  Score=32.86  Aligned_cols=9  Identities=22%  Similarity=0.446  Sum_probs=3.2

Q ss_pred             hhhHHHHHH
Q 010551          413 SRFREKIDE  421 (507)
Q Consensus       413 ~~l~~~l~~  421 (507)
                      +.|..+|+.
T Consensus       136 a~L~~Kier  144 (338)
T KOG3647|consen  136 AALGSKIER  144 (338)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=83.90  E-value=36  Score=31.43  Aligned_cols=273  Identities=15%  Similarity=0.167  Sum_probs=110.3

Q ss_pred             EEEECCEEEE--EcCC-CCCccCCceEEEEcc-CCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEec
Q 010551           33 AAVFDQKLYI--VGGS-RNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        33 ~~~~~~~iyi--~GG~-~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG  108 (507)
                      +.+.++.||.  ++|. ++-..+.-.|+=.-+ -++|..-.-..+.  +|      ..+...-.+.+|.+++++||++=-
T Consensus        21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~--H~------~yptvnyHCmSMGv~~NRLfa~iE   92 (367)
T PF12217_consen   21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL--HP------DYPTVNYHCMSMGVVGNRLFAVIE   92 (367)
T ss_dssp             -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS-----T------TTTTEEEE-B-EEEETTEEEEEEE
T ss_pred             ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhc--CC------CCCccceeeeeeeeecceeeEEEe
Confidence            3456777773  4543 332223333444443 3467653222111  00      122233456678899999998743


Q ss_pred             cC-CCCCCcceEEEEE---CCCCcEEEeecCCCCCC-------CCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          109 HY-KKSSDSMIVRFID---LETNLCGVMETSGKVPV-------TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       109 ~~-~~~~~~~~~~~yd---~~t~~W~~~~~~g~~p~-------~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      .. -..........|+   +..+.|+.-... ..|.       .-.-|+.+.+++.-|.+|=.+++-. ...+=.+-. +
T Consensus        93 tR~~a~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s-PRe~G~~yf-s  169 (367)
T PF12217_consen   93 TRTVASNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS-PRELGFLYF-S  169 (367)
T ss_dssp             EEETTT--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSS-S-EEEEEEE-T
T ss_pred             ehhhhhhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCC-cceeeEEEe-c
Confidence            32 1122233444454   456778764321 2222       3345788888887777775544322 122222111 1


Q ss_pred             CcEEEeccC--CCCCCCCCCce---EEEEcCCEEEEEcCCC-CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE
Q 010551          178 MTWDAVEVT--QTPPAPRYDHS---AALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT  251 (507)
Q Consensus       178 ~~W~~~~~~--~~~p~~r~~~~---~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~  251 (507)
                      ..|......  ...|..-...+   ++.+-++.||+.--.. ....-+.+++-+.....|..+...  -...-...-.+.
T Consensus       170 ~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFak  247 (367)
T PF12217_consen  170 DAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAK  247 (367)
T ss_dssp             TTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEE
T ss_pred             ccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCcee
Confidence            111111000  00121211111   2334466687764332 324445688888888889987431  112233334677


Q ss_pred             ECCeEEEEeccCC---------CCC----cceEEEE-------ECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEE
Q 010551          252 IDENWYIVGGGDN---------NNG----CQETIVL-------NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL  311 (507)
Q Consensus       252 ~~~~l~v~GG~~~---------~~~----~~~~~~~-------d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (507)
                      +++.|||||--..         +..    ....+..       ++..-.|..|...--.-.....+....++++.++=.-
T Consensus       248 vgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~ly  327 (367)
T PF12217_consen  248 VGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLY  327 (367)
T ss_dssp             ETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEE
T ss_pred             eCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEE
Confidence            8999999995321         111    1123322       3344456555432111111223445566677666556


Q ss_pred             EEEccCC
Q 010551          312 VAFGGYN  318 (507)
Q Consensus       312 ~v~GG~~  318 (507)
                      ++|||.+
T Consensus       328 y~FGgED  334 (367)
T PF12217_consen  328 YIFGGED  334 (367)
T ss_dssp             EEEEEB-
T ss_pred             EEecCcc
Confidence            7899964

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=83.77  E-value=18  Score=30.42  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551          466 TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      +++++++++-++.+++++++++.+
T Consensus       112 ~l~~~l~~l~~~~~~l~~~~q~~~  135 (145)
T COG1730         112 KLQQALAELAQRIEQLEQEAQQLQ  135 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433

>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this

Probab=83.68  E-value=7.6  Score=37.37  Aligned_cols=17  Identities=12%  Similarity=0.280  Sum_probs=6.8

Q ss_pred             hHHHhhhhhhhhHHHHH
Q 010551          439 QLVAERSRCFKLEAQIA  455 (507)
Q Consensus       439 ~~~~~~~~~~~~e~~~~  455 (507)
                      .+..+++++.++...++
T Consensus        40 sI~~QkkrLk~L~~sLk   56 (330)
T PF07851_consen   40 SISHQKKRLKELKKSLK   56 (330)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444443333

; GO: 0016021 integral to membrane

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=83.65  E-value=10  Score=40.25  Aligned_cols=50  Identities=20%  Similarity=0.308  Sum_probs=24.1

Q ss_pred             hhhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551          388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~  437 (507)
                      ..+++.|+.++..+...+.....+...|.....+.+..+.++++.++..+
T Consensus        86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~  135 (617)
T PF15070_consen   86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQ  135 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555566566554444434444444444444444444444444433

>PRK10698 phage shock protein PspA; Provisional

Probab=83.65  E-value=23  Score=32.29  Aligned_cols=42  Identities=10%  Similarity=0.251  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  432 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~e  432 (507)
                      +..+.....++...+.........+++++...+...+++++.
T Consensus        33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k   74 (222)
T PRK10698         33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK   74 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444455556666666666666666544

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=83.50  E-value=19  Score=36.31  Aligned_cols=28  Identities=36%  Similarity=0.408  Sum_probs=10.8

Q ss_pred             hHHHHHhhHHHhhhhhhhhHHHHHHHHH
Q 010551          432 ELSSVQGQLVAERSRCFKLEAQIAELQK  459 (507)
Q Consensus       432 el~~~~~~~~~~~~~~~~~e~~~~e~~~  459 (507)
                      +|+.+..++..++|...+|..++..+++
T Consensus       220 el~~kt~el~~q~Ee~skLlsql~d~qk  247 (596)
T KOG4360|consen  220 ELQSKTKELSRQQEENSKLLSQLVDLQK  247 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3333333333333333333333333333

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=83.44  E-value=20  Score=36.55  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHH
Q 010551          392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~  436 (507)
                      ..|++++..+...+.+..+...++.+..++.++.+++.+++-+++
T Consensus        28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~I   72 (445)
T PRK13428         28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARV   72 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555544444444444444444444444443333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=83.44  E-value=12  Score=36.74  Aligned_cols=56  Identities=11%  Similarity=0.097  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhh
Q 010551          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  448 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~  448 (507)
                      ++..+..+.+........+...++.+-+.....+++.|-+|+.++.++.++.+++-
T Consensus        17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v   72 (459)
T KOG0288|consen   17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV   72 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444445555556666666666666666677777766666655443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=83.42  E-value=24  Score=33.83  Aligned_cols=9  Identities=33%  Similarity=0.597  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010551          466 TIENEVQIL  474 (507)
Q Consensus       466 ~le~e~~~~  474 (507)
                      +|+.+++.+
T Consensus       144 qLe~d~qs~  152 (319)
T PF09789_consen  144 QLERDLQSL  152 (319)
T ss_pred             HHHHHHHHH
Confidence            333333333

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=83.36  E-value=63  Score=33.92  Aligned_cols=125  Identities=14%  Similarity=0.241  Sum_probs=70.7

Q ss_pred             CCCCCCcCcEEEE--E-CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCC-CCCCCCceEEEEcCCEEEEEcCC
Q 010551          137 KVPVTRGGHSVTL--V-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGC  212 (507)
Q Consensus       137 ~~p~~r~~~~~~~--~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~  212 (507)
                      ++|..+...+...  + ++++++..      ...-+++.++..+.+..++....+- ..+-..+-++.-++++|.++++.
T Consensus       423 ~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~  496 (691)
T KOG2048|consen  423 DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR  496 (691)
T ss_pred             cchhhhccceeeEEEecCceEEEEe------cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc
Confidence            6777765544433  2 56777766      1244688888888777666432111 11222223333457888888764


Q ss_pred             CCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE----ECCeEEEEeccCCCCCcceEEEEECCCC---cEEEe
Q 010551          213 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT----IDENWYIVGGGDNNNGCQETIVLNMTKL---AWSIL  284 (507)
Q Consensus       213 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~----~~~~l~v~GG~~~~~~~~~~~~~d~~~~---~W~~v  284 (507)
                            ..+++||+++.+-..+..  ..+   ...+++.    ..++++|.      ..-+.++.||+...   .|.+.
T Consensus       497 ------g~I~v~nl~~~~~~~l~~--rln---~~vTa~~~~~~~~~~lvva------ts~nQv~efdi~~~~l~~ws~~  558 (691)
T KOG2048|consen  497 ------GQIFVYNLETLESHLLKV--RLN---IDVTAAAFSPFVRNRLVVA------TSNNQVFEFDIEARNLTRWSKN  558 (691)
T ss_pred             ------ceEEEEEcccceeecchh--ccC---cceeeeeccccccCcEEEE------ecCCeEEEEecchhhhhhhhhc
Confidence                  379999999988666521  111   2222222    24566666      12346889998543   46554

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=83.12  E-value=21  Score=31.64  Aligned_cols=72  Identities=18%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      |.-|+...++....+...-.++-.|+..+.+....+...+.++...+..+   +.+..+++....|++++..+.+
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~---~~K~~ELE~ce~ELqr~~~Ea~   83 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL---RTKQLELEVCENELQRKKNEAE   83 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhHhHHHhHHHHHHHhCHHH
Confidence            34444444444433333334455555555555555544444444333322   2233334444444444444443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=83.11  E-value=30  Score=31.82  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=17.7

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhH
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE  451 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e  451 (507)
                      .++++.+|..+.....++...++..+.+++..++|++.|+
T Consensus       121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq  160 (338)
T KOG3647|consen  121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ  160 (338)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444443

>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []

Probab=83.10  E-value=2.8  Score=42.26  Aligned_cols=55  Identities=24%  Similarity=0.355  Sum_probs=30.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010551          444 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGG  498 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g  498 (507)
                      ++++.+++.+++++++++.+..+.++++.++.+|+++++++++++++...+...+
T Consensus       248 ~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~  302 (406)
T PF02388_consen  248 QEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYGDE  302 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            3333444444444444444444666677777777777777777666554443333

These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=83.08  E-value=9.1  Score=32.72  Aligned_cols=15  Identities=33%  Similarity=0.368  Sum_probs=5.4

Q ss_pred             chhHHHhHHHHHhhH
Q 010551          426 HSELSKELSSVQGQL  440 (507)
Q Consensus       426 ~~e~~~el~~~~~~~  440 (507)
                      ++..+++++....++
T Consensus        52 l~~~~~el~~~~~~l   66 (158)
T PF03938_consen   52 LQAKQKELQKLQQKL   66 (158)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=83.03  E-value=19  Score=30.74  Aligned_cols=20  Identities=10%  Similarity=0.321  Sum_probs=7.9

Q ss_pred             hHHHHHHhhccchhHHHhHH
Q 010551          415 FREKIDEVNSTHSELSKELS  434 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~  434 (507)
                      ++.+++..+.+++...++++
T Consensus        48 ~~~~l~~~~~el~~~~~~l~   67 (158)
T PF03938_consen   48 LQKELQAKQKELQKLQQKLQ   67 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444333333

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=82.96  E-value=18  Score=39.63  Aligned_cols=16  Identities=31%  Similarity=0.615  Sum_probs=7.6

Q ss_pred             HHHHHHHhHHHHHHHH
Q 010551          470 EVQILRQQKSAFEQEM  485 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~  485 (507)
                      .+..++.+++.++.+.
T Consensus       586 aL~alrrhke~LE~e~  601 (1195)
T KOG4643|consen  586 ALNALRRHKEKLEEEI  601 (1195)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444555555553

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=82.93  E-value=3.9  Score=32.38  Aligned_cols=10  Identities=20%  Similarity=-0.104  Sum_probs=3.7

Q ss_pred             hhHHHhhhhh
Q 010551          438 GQLVAERSRC  447 (507)
Q Consensus       438 ~~~~~~~~~~  447 (507)
                      -|++.+++++
T Consensus        43 ~EN~~Lr~~l   52 (107)
T PF06156_consen   43 IENEHLRERL   52 (107)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=82.89  E-value=0.38  Score=52.35  Aligned_cols=59  Identities=27%  Similarity=0.433  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHhhccchhHH---HhHHHHHhhHHHhhh---hhhhhHHHHHHHHHHHHhHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELS---KELSSVQGQLVAERS---RCFKLEAQIAELQKMLESSQTIEN  469 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~---~el~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~~~~~le~  469 (507)
                      +...++..+.+++.+++++.   ++.+..+.+++.+++   +..+++..++-.+++|+....+.+
T Consensus       268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~  332 (713)
T PF05622_consen  268 ELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKR  332 (713)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444443332   334444555555543   334455555555555555553333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.85  E-value=60  Score=33.26  Aligned_cols=74  Identities=11%  Similarity=0.073  Sum_probs=36.6

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH---------------HHHHHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---------------TIENEVQILR  475 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~---------------~le~e~~~~~  475 (507)
                      ....|+.++++...++++.+++...+++.-..+.+|.++.......+.++++.+-               ++.+|++.+.
T Consensus       589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~  668 (741)
T KOG4460|consen  589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIP  668 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhH
Confidence            3344444444444455555555555555555555555555444444555544442               4455665555


Q ss_pred             HhHHHHHHH
Q 010551          476 QQKSAFEQE  484 (507)
Q Consensus       476 ~~~~~~~~~  484 (507)
                      .+.+.+...
T Consensus       669 ~~~~~L~~~  677 (741)
T KOG4460|consen  669 DQLRHLGNA  677 (741)
T ss_pred             HHHHHHHHH
Confidence            555544333

>TIGR00634 recN DNA repair protein RecN

Probab=82.83  E-value=5.4  Score=42.21  Aligned_cols=8  Identities=13%  Similarity=0.476  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 010551          455 AELQKMLE  462 (507)
Q Consensus       455 ~e~~~~~~  462 (507)
                      +++++++.
T Consensus       332 ~~l~~eL~  339 (563)
T TIGR00634       332 EKIKEELD  339 (563)
T ss_pred             HHHHHHHH
Confidence            33333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=82.60  E-value=26  Score=32.48  Aligned_cols=30  Identities=13%  Similarity=0.201  Sum_probs=12.7

Q ss_pred             HHHHHHhhhhHHHHhhhhhhHHHHHHhhcc
Q 010551          396 EDKRVLELSLTEVRTENSRFREKIDEVNST  425 (507)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  425 (507)
                      .+.++-+..+++-..++.+|+-+|..+++.
T Consensus        75 akLkes~~~l~dRetEI~eLksQL~RMrED  104 (305)
T PF15290_consen   75 AKLKESENRLHDRETEIDELKSQLARMRED  104 (305)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444433

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.50  E-value=7.9  Score=36.84  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHH
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE  456 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e  456 (507)
                      .+.+++.-+++....++++.+++.++++.+.+++.+.=|...++|
T Consensus       234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e  278 (365)
T KOG2391|consen  234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE  278 (365)
T ss_pred             HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            333444444444444444444444444444444444444444444

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=82.48  E-value=18  Score=26.87  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHH----HHHHHHHHhHHHHHHHHH
Q 010551          418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE----NEVQILRQQKSAFEQEME  486 (507)
Q Consensus       418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le----~e~~~~~~~~~~~~~~~~  486 (507)
                      .|+.+..+.+...+++...+.+....+-+   +.++++|++.--+.+-+||    +-.+++..++.++..+|+
T Consensus         5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~k---i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe   74 (79)
T PF08581_consen    5 LLDAIRQEFENLSQEANSYKHQKDEYEHK---INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555444444444444333332222   3444444333322332333    345666667777777775

; PDB: 3VP9_B 3VP8_B.

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=82.48  E-value=13  Score=38.19  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=16.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551          444 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~  479 (507)
                      +.++..++.+++.++.++...-+++.+..+++++.+
T Consensus       348 ~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~  383 (458)
T COG3206         348 EQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAE  383 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHH
Confidence            444444444444444444444344444444444443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=82.44  E-value=33  Score=29.99  Aligned_cols=15  Identities=33%  Similarity=0.421  Sum_probs=5.7

Q ss_pred             hhhHHHHHHhhccch
Q 010551          413 SRFREKIDEVNSTHS  427 (507)
Q Consensus       413 ~~l~~~l~~~~~~~~  427 (507)
                      ..+..+|++...++.
T Consensus        52 ~~l~~kIeERn~eL~   66 (177)
T PF13870_consen   52 QQLNEKIEERNKELL   66 (177)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333433333333

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=82.43  E-value=31  Score=29.70  Aligned_cols=48  Identities=13%  Similarity=0.182  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~  438 (507)
                      ...+.+++..+...+........+..+...+.+..+.+.+++-+.+..
T Consensus        34 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~   81 (164)
T PRK14471         34 LGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILK   81 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666555555656566666666665555444433

>PRK09343 prefoldin subunit beta; Provisional

Probab=82.42  E-value=25  Score=28.58  Aligned_cols=85  Identities=13%  Similarity=0.212  Sum_probs=0.0

Q ss_pred             HhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh----------------------hhhhhhhHHHHHHHH
Q 010551          401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----------------------RSRCFKLEAQIAELQ  458 (507)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~----------------------~~~~~~~e~~~~e~~  458 (507)
                      +...++....+.+.++++++....+.+.++.++++.+.-+..+                      .+...+++..+.-++
T Consensus         5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie   84 (121)
T PRK09343          5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE   84 (121)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH


Q ss_pred             HHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010551          459 KMLESSQTIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       459 ~~~~~~~~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                         .++..++++.+.+++++..+++++.++
T Consensus        85 ---~~ik~lekq~~~l~~~l~e~q~~l~~l  111 (121)
T PRK09343         85 ---LRSRTLEKQEKKLREKLKELQAKINEM  111 (121)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHH

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=82.38  E-value=16  Score=35.96  Aligned_cols=14  Identities=14%  Similarity=0.337  Sum_probs=5.5

Q ss_pred             HHHHHHhhccchhH
Q 010551          416 REKIDEVNSTHSEL  429 (507)
Q Consensus       416 ~~~l~~~~~~~~e~  429 (507)
                      +..++.++.++.++
T Consensus       303 qmr~qqleeentel  316 (502)
T KOG0982|consen  303 QMRDQQLEEENTEL  316 (502)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33334444444333

>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.30  E-value=4.6  Score=39.06  Aligned_cols=17  Identities=12%  Similarity=0.442  Sum_probs=8.0

Q ss_pred             HHHHHhHHHHHHHHHHh
Q 010551          472 QILRQQKSAFEQEMERA  488 (507)
Q Consensus       472 ~~~~~~~~~~~~~~~~~  488 (507)
                      .++.+++.++++++++.
T Consensus       329 n~i~~~l~ql~rql~~i  345 (497)
T KOG3838|consen  329 NAIHKQLAQLERQLDKI  345 (497)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            33444445555555433

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=82.28  E-value=18  Score=38.34  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             HHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhh
Q 010551          397 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  450 (507)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~  450 (507)
                      ++++++....+.+.++.++++.|+..+.++...+..+++...+....+.+..-|
T Consensus        80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL  133 (632)
T PF14817_consen   80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLL  133 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555665555565666666666666666666555555555544444444443333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=82.15  E-value=13  Score=36.50  Aligned_cols=6  Identities=17%  Similarity=0.063  Sum_probs=2.3

Q ss_pred             CCCCce
Q 010551          192 PRYDHS  197 (507)
Q Consensus       192 ~r~~~~  197 (507)
                      .|.+|+
T Consensus        27 ~r~yFa   32 (359)
T PF10498_consen   27 SRHYFA   32 (359)
T ss_pred             CHHHhc
Confidence            333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG3990 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.05  E-value=6.3  Score=35.59  Aligned_cols=16  Identities=31%  Similarity=0.351  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhhhhH
Q 010551          391 IDAIKEDKRVLELSLT  406 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~  406 (507)
                      +++|+++...++..|.
T Consensus       227 i~~lkeeia~Lkk~L~  242 (305)
T KOG3990|consen  227 IQKLKEEIARLKKLLH  242 (305)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5566666555544443

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=81.99  E-value=5.8  Score=42.02  Aligned_cols=21  Identities=29%  Similarity=0.181  Sum_probs=10.6

Q ss_pred             HHHHHHHHHhhcccccCCCce
Q 010551          479 SAFEQEMERATSVQTQGSGGV  499 (507)
Q Consensus       479 ~~~~~~~~~~~~~~~q~~~g~  499 (507)
                      |..++.+-++...|...++|+
T Consensus       287 QK~~~a~aea~l~~ll~sg~~  307 (1064)
T KOG1144|consen  287 QKEEAALAEAFLKQLLASGGG  307 (1064)
T ss_pred             hHHHHHHHHHHHHHHHhcCCC
Confidence            344444555555555555554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=81.98  E-value=90  Score=34.71  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=34.0

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      ++.+++.||.+.      .+.+||+.++.-.....  .    .....++.+   ++.+++.|+.+      +.+.+||+.
T Consensus       587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~--~----~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~  648 (793)
T PLN00181        587 DPTLLASGSDDG------SVKLWSINQGVSIGTIK--T----KANICCVQFPSESGRSLAFGSAD------HKVYYYDLR  648 (793)
T ss_pred             CCCEEEEEcCCC------EEEEEECCCCcEEEEEe--c----CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence            456777776532      38888887664322110  0    111222222   35677777755      358999987


Q ss_pred             CC
Q 010551          177 TM  178 (507)
Q Consensus       177 t~  178 (507)
                      +.
T Consensus       649 ~~  650 (793)
T PLN00181        649 NP  650 (793)
T ss_pred             CC
Confidence            54

>PRK10115 protease 2; Provisional

Probab=81.92  E-value=83  Score=34.27  Aligned_cols=251  Identities=8%  Similarity=-0.053  Sum_probs=117.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++++++++-...+....++++.|+.++..  ++..                .... ..+++-. ++.-+++.........
T Consensus       137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~----------------i~~~-~~~~~w~~D~~~~~y~~~~~~~~~  197 (686)
T PRK10115        137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YPEL----------------LDNV-EPSFVWANDSWTFYYVRKHPVTLL  197 (686)
T ss_pred             CCCEEEEEecCCCcEEEEEEEEECCCCCC--CCcc----------------ccCc-ceEEEEeeCCCEEEEEEecCCCCC
Confidence            55566666544455556778888876631  1111                1111 1333333 4443444433322123


Q ss_pred             cceEEEEECCCCcE--EEeecCCCCCCCCcCcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEEC--CCCcEEEeccCCCC
Q 010551          116 SMIVRFIDLETNLC--GVMETSGKVPVTRGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTP  189 (507)
Q Consensus       116 ~~~~~~yd~~t~~W--~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~--~t~~W~~~~~~~~~  189 (507)
                      ...+|.+++.|+.-  ..+-..   +......+.... ++ .++ +.....   ..+.++.|+.  .+..|..+..   .
T Consensus       198 ~~~v~~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~-i~~~~~---~~~~~~l~~~~~~~~~~~~~~~---~  267 (686)
T PRK10115        198 PYQVWRHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVV-IHLASA---TTSEVLLLDAELADAEPFVFLP---R  267 (686)
T ss_pred             CCEEEEEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEE-EEEECC---ccccEEEEECcCCCCCceEEEE---C
Confidence            46799999998832  222211   111222222222 33 343 443332   2456888884  3344433321   1


Q ss_pred             CCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC-CCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCc
Q 010551          190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC  268 (507)
Q Consensus       190 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~  268 (507)
                      + ....+ .....++.+|+.--.+  .....+...++. ...|+.+-.  ..+ .+.--.+...++.+++..-   ....
T Consensus       268 ~-~~~~~-~~~~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~--~~~-~~~i~~~~~~~~~l~~~~~---~~g~  337 (686)
T PRK10115        268 R-KDHEY-SLDHYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIP--PRE-NIMLEGFTLFTDWLVVEER---QRGL  337 (686)
T ss_pred             C-CCCEE-EEEeCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEEC--CCC-CCEEEEEEEECCEEEEEEE---eCCE
Confidence            1 11112 2224456677765432  222347777776 578887632  111 1122233444677776642   2234


Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEE----cCceEEEEEccCCCCcCceEEEEECCCCCCC
Q 010551          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII----EGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~  336 (507)
                      ..+++++..+.....+.. +.+      ... .....    .++..++.+.++  ....++|.+|+....+.
T Consensus       338 ~~l~~~~~~~~~~~~l~~-~~~------~~~-~~~~~~~~~~~~~~~~~~ss~--~~P~~~y~~d~~~~~~~  399 (686)
T PRK10115        338 TSLRQINRKTREVIGIAF-DDP------AYV-TWIAYNPEPETSRLRYGYSSM--TTPDTLFELDMDTGERR  399 (686)
T ss_pred             EEEEEEcCCCCceEEecC-CCC------ceE-eeecccCCCCCceEEEEEecC--CCCCEEEEEECCCCcEE
Confidence            568888876655555431 111      111 11111    112344444443  35688999998776554

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=81.76  E-value=15  Score=40.33  Aligned_cols=52  Identities=21%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      +.+.+..++.+++.+..+.++++.+.+.+++.++....+++.++...++++.
T Consensus       644 ~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~  695 (1072)
T KOG0979|consen  644 EIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKE  695 (1072)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3333444444444444444455555555554444444444443333333333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=81.74  E-value=18  Score=37.24  Aligned_cols=17  Identities=24%  Similarity=0.352  Sum_probs=6.9

Q ss_pred             HHHHHHHhHHHHHHHHH
Q 010551          470 EVQILRQQKSAFEQEME  486 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~  486 (507)
                      ++.+++.++...+.+++
T Consensus       292 ~l~~~~~~l~~~~~~l~  308 (457)
T TIGR01000       292 EITDLNQKLLELESKIK  308 (457)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333444444444443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=81.69  E-value=79  Score=33.84  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             CCCceEEeecCCCC-CCc-------cccc-----eEEEECCEEEEEcCCCCCccCCceEEEEccCCceee-eccccccCC
Q 010551           11 PYDLWVTLPVSGAR-PSP-------RYKH-----AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSN-LRLETELDA   76 (507)
Q Consensus        11 ~~~~W~~~~~~~~~-p~~-------r~~~-----~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~~~~~~   76 (507)
                      .+..|..++.+++. |.|       +.||     +.++..+++.++.|.+     +++-+.|..+..-.. +++      
T Consensus       344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-----~SikiWn~~t~kciRTi~~------  412 (888)
T KOG0306|consen  344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-----ESIKIWNRDTLKCIRTITC------  412 (888)
T ss_pred             CceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-----CcEEEEEccCcceeEEecc------
Confidence            34578888875433 322       2233     2333455555555422     346677776544322 221      


Q ss_pred             CccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEE
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLI  155 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy  155 (507)
                                   . +-+++..+ |++..+.|+.++.      +.+||..+..--...   ....+.....+..-+++-+
T Consensus       413 -------------~-y~l~~~Fvpgd~~Iv~G~k~Ge------l~vfdlaS~~l~Eti---~AHdgaIWsi~~~pD~~g~  469 (888)
T KOG0306|consen  413 -------------G-YILASKFVPGDRYIVLGTKNGE------LQVFDLASASLVETI---RAHDGAIWSISLSPDNKGF  469 (888)
T ss_pred             -------------c-cEEEEEecCCCceEEEeccCCc------eEEEEeehhhhhhhh---hccccceeeeeecCCCCce
Confidence                         1 33344444 5666666665443      778887765321111   1111111111222356778


Q ss_pred             EEcCCCC
Q 010551          156 IFGGEDR  162 (507)
Q Consensus       156 ~~GG~~~  162 (507)
                      +.||.+.
T Consensus       470 vT~saDk  476 (888)
T KOG0306|consen  470 VTGSADK  476 (888)
T ss_pred             EEecCCc
Confidence            8888764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=81.41  E-value=43  Score=30.64  Aligned_cols=135  Identities=21%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             ceeeeccccccCCCccccCCCcCCCCCccceeEE-EECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCC
Q 010551           64 AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV-KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTR  142 (507)
Q Consensus        64 ~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r  142 (507)
                      .|+..+++..           ...+.|-.+...+ .-.|.|+..||.+       .+|..|+.+++.+..-    .-..-
T Consensus       100 lwe~~~P~~~-----------~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtD  157 (325)
T KOG0649|consen  100 LWEVKIPMQV-----------DAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTD  157 (325)
T ss_pred             hhhhcCcccc-----------CcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcc
Confidence            4766666543           1334444443333 3478899998843       4999999999977653    11223


Q ss_pred             cCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEe-ccCCC--CCCCCCCc--eEEEEcCCEEEEEcCCCCCC
Q 010551          143 GGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAV-EVTQT--PPAPRYDH--SAALHANRYLIVFGGCSHSI  216 (507)
Q Consensus       143 ~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~-~~~~~--~p~~r~~~--~~~~~~~~~l~v~GG~~~~~  216 (507)
                      +-|+.+.-+. -=++-|+-|+      .+-++|+.|.+-..+ .+...  +..|-.+-  .+...+.+ -+|.||..   
T Consensus       158 YvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp---  227 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP---  227 (325)
T ss_pred             eeeeeeecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC---
Confidence            3444444332 2234555543      477788888764433 22211  11111222  33334444 66666642   


Q ss_pred             CCCcEEEEECCCCcEEe
Q 010551          217 FFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       217 ~~~~i~~~d~~~~~W~~  233 (507)
                         .+-.+++.+.+-+.
T Consensus       228 ---~lslwhLrsse~t~  241 (325)
T KOG0649|consen  228 ---KLSLWHLRSSESTC  241 (325)
T ss_pred             ---ceeEEeccCCCceE
Confidence               34555555554443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=81.40  E-value=14  Score=38.13  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=13.0

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~  441 (507)
                      ++.+|+.++.++...+++.++.....+.++.
T Consensus       114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~  144 (546)
T KOG0977|consen  114 EITKLREELKELRKKLEKAEKERRGAREKLD  144 (546)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3444444444444444444444333333333

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=81.37  E-value=40  Score=31.31  Aligned_cols=24  Identities=13%  Similarity=0.418  Sum_probs=12.0

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELS  434 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~  434 (507)
                      ....|+++++.++..+....+++.
T Consensus        82 ~l~~Lq~ql~~l~akI~k~~~el~  105 (258)
T PF15397_consen   82 KLSKLQQQLEQLDAKIQKTQEELN  105 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555544444433

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=81.12  E-value=26  Score=37.38  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=12.5

Q ss_pred             cchhhHHHHHHHHHHHhhhhH
Q 010551          386 DVRTDIDAIKEDKRVLELSLT  406 (507)
Q Consensus       386 ~~~~~~~~l~~~~~~~~~~~~  406 (507)
                      .++.+..+|.++.|++.+.+.
T Consensus       391 plrsENaqLrRrLrilnqqlr  411 (861)
T PF15254_consen  391 PLRSENAQLRRRLRILNQQLR  411 (861)
T ss_pred             hhhhhhHHHHHHHHHHHHHHH
Confidence            455556666666666655443

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=81.02  E-value=13  Score=38.31  Aligned_cols=11  Identities=27%  Similarity=0.462  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q 010551          391 IDAIKEDKRVL  401 (507)
Q Consensus       391 ~~~l~~~~~~~  401 (507)
                      ...|+..|+.+
T Consensus       113 LaRLe~dkesL  123 (861)
T KOG1899|consen  113 LARLEMDKESL  123 (861)
T ss_pred             HHHHhcchhhh
Confidence            33334444433

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=81.00  E-value=36  Score=29.45  Aligned_cols=47  Identities=11%  Similarity=0.198  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551          392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~  438 (507)
                      ..|.+++..+...+.+......+..+.+.+.+..+.+.+.+-+.+..
T Consensus        37 ~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~   83 (167)
T PRK14475         37 GALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLA   83 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666665555555555555555566666666555555444433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=80.92  E-value=20  Score=32.61  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             HHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHH
Q 010551          394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~  437 (507)
                      |....++++..+.+.+.........-..+++++.+.+++....+
T Consensus        28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~   71 (221)
T PF04012_consen   28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWE   71 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex

Probab=80.91  E-value=1.6  Score=35.25  Aligned_cols=60  Identities=15%  Similarity=0.152  Sum_probs=37.1

Q ss_pred             HHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010551          420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       420 ~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~  479 (507)
                      ...-.++..+.+.|-.-..++..+...+.+++....+++++|.-+...+++++..+..++
T Consensus        39 ~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE   98 (116)
T PF05064_consen   39 NEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE   98 (116)
T ss_dssp             ----------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455556677777777777777777777777777777777777777777776666554

The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=80.90  E-value=7.5  Score=36.55  Aligned_cols=29  Identities=28%  Similarity=0.173  Sum_probs=11.2

Q ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhHHHHH
Q 010551          440 LVAERSRCFKLEAQIAELQKMLESSQTIE  468 (507)
Q Consensus       440 ~~~~~~~~~~~e~~~~e~~~~~~~~~~le  468 (507)
                      ++.++.++.+|+-++++..-+++++++.+
T Consensus        63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq   91 (263)
T PRK10803         63 LSDNQSDIDSLRGQIQENQYQLNQVVERQ   91 (263)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33333333333334444444443333333

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=80.89  E-value=35  Score=29.22  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~  438 (507)
                      ...|.+++..+...+........+..+.+.+.+..+.+.+++..++..
T Consensus        31 ~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~   78 (159)
T PRK13461         31 KAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVE   78 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566666666666665555555555566666666665555444443

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=80.81  E-value=33  Score=33.32  Aligned_cols=14  Identities=21%  Similarity=0.351  Sum_probs=6.3

Q ss_pred             HHHHHHHHhhcccc
Q 010551          480 AFEQEMERATSVQT  493 (507)
Q Consensus       480 ~~~~~~~~~~~~~~  493 (507)
                      ++..++.+++...-
T Consensus       478 RLaaEItrLRtllt  491 (593)
T KOG4807|consen  478 RLAAEITRLRTLLT  491 (593)
T ss_pred             HHHHHHHHHHHHhc
Confidence            44444444444433

>PRK02119 hypothetical protein; Provisional

Probab=80.78  E-value=11  Score=27.47  Aligned_cols=52  Identities=15%  Similarity=0.129  Sum_probs=0.0

Q ss_pred             hhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551          438 GQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       438 ~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      ++.....+|+.+||.+++-.+.-+.++.    +.++++..+++++..+.+.+++.+
T Consensus         2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=80.76  E-value=11  Score=41.44  Aligned_cols=7  Identities=14%  Similarity=0.415  Sum_probs=2.8

Q ss_pred             HHHHHHH
Q 010551          478 KSAFEQE  484 (507)
Q Consensus       478 ~~~~~~~  484 (507)
                      ..+++++
T Consensus       378 ~~~L~Re  384 (754)
T TIGR01005       378 LDALQRD  384 (754)
T ss_pred             HHHHHHH
Confidence            3344444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=80.73  E-value=5  Score=31.84  Aligned_cols=30  Identities=17%  Similarity=0.118  Sum_probs=11.7

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHhhhhhh
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAERSRCF  448 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~~~~~~  448 (507)
                      +.+++..+.++.+|-...+-+++.+++++.
T Consensus        24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~   53 (110)
T PRK13169         24 LGALKKQLAELLEENTALRLENDKLRERLE   53 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333444444444444

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=80.67  E-value=18  Score=29.93  Aligned_cols=29  Identities=24%  Similarity=0.294  Sum_probs=11.2

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHh
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~  443 (507)
                      ++..++.....+......+.....++..+
T Consensus        24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l   52 (135)
T TIGR03495        24 ARADLERANRVLKAQQAELASKANQLIVL   52 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33344444444333333333333333333

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=80.64  E-value=13  Score=38.14  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=20.3

Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010551          441 VAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       441 ~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~  486 (507)
                      +.+.+++..++.++...-+...+..+|+++.+..++-.+++....+
T Consensus       352 ~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~q  397 (458)
T COG3206         352 AALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQ  397 (458)
T ss_pred             HHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444433333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=80.59  E-value=17  Score=39.49  Aligned_cols=74  Identities=20%  Similarity=0.372  Sum_probs=37.9

Q ss_pred             HHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551          416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       416 ~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      ..+++..+.++++.+..+..++.++...++-....+.++.-.+...+.++    .++.++.+++.+...|+.+++..+
T Consensus       616 ~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er  693 (769)
T PF05911_consen  616 QDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKER  693 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455555555555444444444444443333333333    345667777777777777766543

The function of this family is unknown.

>PRK11519 tyrosine kinase; Provisional

Probab=80.59  E-value=17  Score=39.71  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=35.8

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceeeee
Q 010551          439 QLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWI  503 (507)
Q Consensus       439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~  503 (507)
                      +...+++++.+++.++.++-+.+++..+|+++.+..++--+.+.+.++|.+ ..+....+.|+=|
T Consensus       347 ~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~-i~~a~~~~~~rIi  410 (719)
T PRK11519        347 KRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK-ITEASTVGDVRIV  410 (719)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHhcCCCCCeEEE
Confidence            334445556666666666666666666666666666666655555555443 2223333455544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.55  E-value=97  Score=34.14  Aligned_cols=34  Identities=15%  Similarity=0.206  Sum_probs=24.9

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeec
Q 010551           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLR   69 (507)
Q Consensus        30 ~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~   69 (507)
                      ..+-+++++.||+...      .+.++.+|..|++  |+.-+
T Consensus       187 e~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~  222 (764)
T TIGR03074       187 QATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDP  222 (764)
T ss_pred             ccCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcC
Confidence            3455677999999864      3578999998875  76644

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=80.40  E-value=58  Score=31.50  Aligned_cols=136  Identities=12%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             CEEEEEcCC-C-C--CccC-CceEEEEccCC-----ceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEe
Q 010551           38 QKLYIVGGS-R-N--GRFL-SDVQVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        38 ~~iyi~GG~-~-~--~~~~-~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~G  107 (507)
                      ..++++|.. . +  .... ..+++|+....     .++.+....-                +-.-++++.++++|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~----------------~g~V~ai~~~~~~lv~~~  105 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV----------------KGPVTAICSFNGRLVVAV  105 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE----------------SS-EEEEEEETTEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee----------------cCcceEhhhhCCEEEEee
Confidence            467777752 1 1  1122 67999999885     5555543321                123467777899977766


Q ss_pred             ccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccC
Q 010551          108 GHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT  186 (507)
Q Consensus       108 G~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~  186 (507)
                      |.        .+.+|++.... +....   ....+....++.++++.|++---..+     -.++.|+....+-..+.. 
T Consensus       106 g~--------~l~v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~vgD~~~s-----v~~~~~~~~~~~l~~va~-  168 (321)
T PF03178_consen  106 GN--------KLYVYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILVGDAMKS-----VSLLRYDEENNKLILVAR-  168 (321)
T ss_dssp             TT--------EEEEEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEEEESSSS-----EEEEEEETTTE-EEEEEE-
T ss_pred             cC--------EEEEEEccCcccchhhh---eecceEEEEEEeccccEEEEEEcccC-----EEEEEEEccCCEEEEEEe-
Confidence            52        37788877777 87776   34444455667777887765322221     124456765555666653 


Q ss_pred             CCCCCCCCCceEEEE-cCCEEEEE
Q 010551          187 QTPPAPRYDHSAALH-ANRYLIVF  209 (507)
Q Consensus       187 ~~~p~~r~~~~~~~~-~~~~l~v~  209 (507)
                        .+.++...++..+ +++ .++.
T Consensus       169 --d~~~~~v~~~~~l~d~~-~~i~  189 (321)
T PF03178_consen  169 --DYQPRWVTAAEFLVDED-TIIV  189 (321)
T ss_dssp             --ESS-BEEEEEEEE-SSS-EEEE
T ss_pred             --cCCCccEEEEEEecCCc-EEEE
Confidence              2335555566666 454 4443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=80.22  E-value=24  Score=32.21  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~  486 (507)
                      +++.+..++.+++.++.++..
T Consensus       193 eie~a~~~Le~ei~~l~~~~~  213 (221)
T PF05700_consen  193 EIEVACEELEQEIEQLKRKAA  213 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444433

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins

Probab=80.22  E-value=6.6  Score=37.80  Aligned_cols=39  Identities=23%  Similarity=0.434  Sum_probs=16.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceee
Q 010551          457 LQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWR  501 (507)
Q Consensus       457 ~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~  501 (507)
                      ++++++.+.++.++++++.++...|.+-|.      -.+.+|.||
T Consensus        36 L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~------~~k~rG~wG   74 (304)
T PF02646_consen   36 LKEQLKQLSEANGEIQQLSQEASNLTSALK------NSKTRGNWG   74 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHh------CCCchhhHH
Confidence            333333334444444444444444433332      234556664

The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=80.21  E-value=40  Score=29.51  Aligned_cols=69  Identities=13%  Similarity=0.215  Sum_probs=42.7

Q ss_pred             CCccCcEEEEECCCCcEEEeccCCC--CCCCCCCceEEEEcCCEE-EEEcCCCCC-CCCCcEEEEECCCCcEEecc
Q 010551          164 RKLLNDVHFLDLETMTWDAVEVTQT--PPAPRYDHSAALHANRYL-IVFGGCSHS-IFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       164 ~~~~n~~~~~d~~t~~W~~~~~~~~--~p~~r~~~~~~~~~~~~l-~v~GG~~~~-~~~~~i~~~d~~~~~W~~~~  235 (507)
                      .....++|++|..++.|..+.....  -..|.   -+.-+++..| +++|...+. ..-..+|+|++.++.-..+.
T Consensus        84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly  156 (200)
T PF15525_consen   84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY  156 (200)
T ss_pred             cccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence            3346789999999999877754221  11233   2344566555 455532221 23357999999999988763

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=80.06  E-value=2.4  Score=36.28  Aligned_cols=18  Identities=6%  Similarity=0.154  Sum_probs=1.6

Q ss_pred             HhhHHHhhhhhhhhHHHH
Q 010551          437 QGQLVAERSRCFKLEAQI  454 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e~~~  454 (507)
                      +.+.|.+++++.+|++++
T Consensus        30 ~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen   30 REEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHCH--------------
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=80.05  E-value=25  Score=38.34  Aligned_cols=6  Identities=50%  Similarity=0.911  Sum_probs=2.4

Q ss_pred             HHHHHH
Q 010551          391 IDAIKE  396 (507)
Q Consensus       391 ~~~l~~  396 (507)
                      +..+++
T Consensus       324 i~~lke  329 (775)
T PF10174_consen  324 IEVLKE  329 (775)
T ss_pred             HHHHHH
Confidence            444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	507
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		6e-04

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 17/219 (7%)
Query: 102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGED 161
           ++ ++GG+  +S  S  V  +D   +  GV  +   + V RG    T +G  + + GG D
Sbjct: 64  RIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 162 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL 221
            SR+  +   + D     W  +   QT      + +  + A+  +   GG       N +
Sbjct: 123 GSRRHTSMERY-DPNIDQWSMLGDMQTAR----EGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 222 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 281
              D  T  W+       + T R+G     ++++ Y+VGG D           N+   +W
Sbjct: 178 EKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 282 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 320
           + +TS      + +    V + ++ G   L A  GY+G 
Sbjct: 235 TTVTS------MTTPRCYVGATVLRGR--LYAIAGYDGN 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	7e-40
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	5e-38
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	7e-34
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	5e-28
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-27
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-24
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-10
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	8e-24
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	3e-22
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-09
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-23
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	8e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	9e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	7e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	7e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	4e-10
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-06
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  152 bits (385), Expect = 7e-40
 Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 31/282 (10%)

Query: 94  HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVTRGGHSVTLV 150
             +   G  +  +GG      + ++   + +  +   +  +  +S +VPV R  H+ T +
Sbjct: 391 GDVDVAGNDVFYMGGSNPYRVNEILQ--LSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI 448

Query: 151 G--SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 208
              ++L++ GG     + L+D    D++T  W    + ++    R+ HSA    +  +++
Sbjct: 449 SRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW---SMIKSLSHTRFRHSACSLPDGNVLI 505

Query: 209 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW---YIVGGGDNN 265
            GG +       + + ++    +     K +        AG+  D       I+GGG  +
Sbjct: 506 LGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD 562

Query: 266 NGC----QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-- 319
                        +       I    K ++PL     S    I      L+  GG +   
Sbjct: 563 QTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI--TPRKLLIVGGTSPSG 620

Query: 320 --KYNNEVFV-----MRLKPRDIPRPKIFQSPAAAAAAASVT 354
                N +         L    I R          A  + V+
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS 662

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  147 bits (371), Expect = 5e-38
 Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 42/275 (15%)

Query: 11  PYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSN 67
             D+      S   P  R  H       + +L ++GG     + LSD  +FD+++  WS 
Sbjct: 423 KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWS- 481

Query: 68  LRLETELDADKTEDSGLLEVLP-PMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLE 125
                           +++ L      H         +LILGG    +    ++ + ++ 
Sbjct: 482 ----------------MIKSLSHTRFRHSACSLPDGNVLILGG---VTEGPAMLLY-NVT 521

Query: 126 TNLCGVMETSGKVPVTRGGHS---VTLVGSRL-IIFGGEDRSRKLLNDVHFLDLE----T 177
             +   +    +        +      V  +  I+ GG      + +       +    T
Sbjct: 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581

Query: 178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF---NDLHVLDLQTNEWSQP 234
                ++  Q P   RY         R L++ GG S S  F   N +  LD  +   +  
Sbjct: 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 235 EIKGDLVTG----RAGHAGITIDEN-WYIVGGGDN 264
            I   +        AG + ++      +I+GGG  
Sbjct: 642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  134 bits (339), Expect = 7e-34
 Identities = 50/302 (16%), Positives = 102/302 (33%), Gaps = 21/302 (6%)

Query: 65  WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 124
           W +    T+ +  K E    LE       H ++   T             D  I      
Sbjct: 313 WESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINL- 371

Query: 125 ETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 184
            T          + P+ R    V + G+ +   GG +  R  +N++  L +     D   
Sbjct: 372 -TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSIHYDKIDMKN 428

Query: 185 VTQTP---PAPRYDHSA-ALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGD 239
           +  +    P  R  H+   +  N  L++ GG  +     +D  + D++T EWS       
Sbjct: 429 IEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI---KS 485

Query: 240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 299
           L   R  H+  ++ +   ++ GG         ++ N+T+  +  +T  K      S   +
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVT-PKDEFFQNSLVSA 542

Query: 300 VCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRD----IPRPKIFQSPAAAAAAASV 353
                   +  ++  GG+  +   +++  + +    +    I   K  Q P      + +
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602

Query: 354 TA 355
             
Sbjct: 603 KY 604

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 69.0 bits (168), Expect = 1e-12
 Identities = 23/222 (10%), Positives = 46/222 (20%), Gaps = 68/222 (30%)

Query: 2   DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD---QKLYIVGG--SRNGRFLSDVQ 56
                   +  +++  +             A   FD   ++  I+GG             
Sbjct: 512 GPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI 571

Query: 57  VFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDH-CMVKWGTKLLILGGHYKKSSD 115
           +F   +   +            T    L   L              KLLI+GG       
Sbjct: 572 IFKYDAENATEP---------ITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT------ 616

Query: 116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 175
                                                               N +  LD 
Sbjct: 617 -------------------------------------------SPSGLFDRTNSIISLDP 633

Query: 176 ETMTWDAVEVT----QTPPAPRYDHSAALHANRYLIVFGGCS 213
            + T  ++ ++    +         S    +   + + GG +
Sbjct: 634 LSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  114 bits (287), Expect = 1e-28
 Identities = 57/301 (18%), Positives = 104/301 (34%), Gaps = 45/301 (14%)

Query: 25  PSPRYKHAAAVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG 83
             PR +      ++ L +VGG       +  V+ +D ++  WS                 
Sbjct: 3   QGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF---------------- 45

Query: 84  LLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 139
               LP +         V    ++ ++GG+  +S  S +    D   +  GV  +   + 
Sbjct: 46  ----LPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL-DYTADEDGVWYSVAPMN 100

Query: 140 VTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSA 198
           V RG    T +G  + + GG D SR     +   D     W  +          R     
Sbjct: 101 VRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSML----GDMQTAREGAGL 155

Query: 199 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI 258
            +  +  +   GG       N +   D  T  W+       + T R+G     ++++ Y+
Sbjct: 156 VVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMATKRSGAGVALLNDHIYV 211

Query: 259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 318
           VGG D           N+   +W+ +T       + +    V + ++ G   L A  GY+
Sbjct: 212 VGGFDGTAHLSSVEAYNIRTDSWTTVT------SMTTPRCYVGATVLRG--RLYAIAGYD 263

Query: 319 G 319
           G
Sbjct: 264 G 264

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  104 bits (262), Expect = 3e-25
 Identities = 54/286 (18%), Positives = 94/286 (32%), Gaps = 52/286 (18%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRS---LAWSNLR 69
             W  LP   +    R   A+     ++Y++GG      LS V+  D  +     W +  
Sbjct: 41  QEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-- 95

Query: 70  LETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 125
                             + PM            G  + + GG       + + R+ D  
Sbjct: 96  ------------------VAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERY-DPN 136

Query: 126 TN---LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 182
            +   + G M+T+      R G  + +    +   GG D     LN V   D  T  W  
Sbjct: 137 IDQWSMLGDMQTA------REGAGLVVASGVIYCLGGYDGLNI-LNSVEKYDPHTGHW-- 187

Query: 183 VEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
              T   P    R     AL  N ++ V GG   +   + +   +++T+ W+       +
Sbjct: 188 ---TNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT---VTSM 240

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286
            T R       +    Y + G D N+        +    +W ++TS
Sbjct: 241 TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTS 286

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 38/182 (20%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
            + R      V    +Y +GG      L+ V+ +D  +  W+N                 
Sbjct: 147 QTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN----------------- 189

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGK 137
              + PM    S   +      + ++GG    +  S +  + ++ T+       M T   
Sbjct: 190 ---VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAY-NIRTDSWTTVTSMTTP-- 243

Query: 138 VPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 197
               R     T++  RL    G D +  LL+ +   D    +W   EV  +    R D  
Sbjct: 244 ----RCYVGATVLRGRLYAIAGYDGN-SLLSSIECYDPIIDSW---EVVTSMGTQRCDAG 295

Query: 198 AA 199
             
Sbjct: 296 VC 297

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 16/173 (9%)

Query: 150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP--PAPRYDHSAALHANRYLI 207
               L++ GG    +  ++ V   D +T  W     +  P     R   ++    +R + 
Sbjct: 13  ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-----SFLPSITRKRRYVASVSLHDR-IY 66

Query: 208 VFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG 267
           V GG       + +  LD   +E         +   R      T+ +  Y+ GG D +  
Sbjct: 67  VIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR 126

Query: 268 CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 320
                  +     WS+L        + +        +  G   +   GGY+G 
Sbjct: 127 HTSMERYDPNIDQWSMLG------DMQTAREGAGLVVASG--VIYCLGGYDGL 171

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  112 bits (283), Expect = 5e-28
 Identities = 54/309 (17%), Positives = 89/309 (28%), Gaps = 56/309 (18%)

Query: 23  ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82
           +   PR  HA  V  + +Y  GG    + LS ++ ++  +  W                 
Sbjct: 11  SGLVPRGSHAPKV-GRLIYTAGG-YFRQSLSYLEAYNPSNGTWLR--------------- 53

Query: 83  GLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFI---DLETN---LCGVM 132
                L  +    S       G  L  +GG       +     +   +  TN    C  M
Sbjct: 54  -----LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM 108

Query: 133 ETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PA 191
                    R    V ++   +   GG        N V   + E   W  V     P   
Sbjct: 109 SVP------RNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLV----APMLT 157

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
            R     A+     L   GG   +   N       + NEW        + T R+G     
Sbjct: 158 RRIGVGVAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIRSGAGVCV 213

Query: 252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
           +    Y  GG D  +        ++    W+ +  +          L +   + +G   +
Sbjct: 214 LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRRSALGIT--VHQG--RI 265

Query: 312 VAFGGYNGK 320
              GGY+G 
Sbjct: 266 YVLGGYDGH 274

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  105 bits (263), Expect = 2e-25
 Identities = 49/232 (21%), Positives = 76/232 (32%), Gaps = 44/232 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
             PR +    V D  +Y VGGS      + V+ ++     W                   
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH------------------ 150

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGK 137
             ++ PM        +      L  +GG    +  +    +   E N   +   M     
Sbjct: 151 --LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY-YPERNEWRMITAM----- 202

Query: 138 VPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDH 196
               R G  V ++ + +   GG D     LN V   D+ET TW  V     P    R   
Sbjct: 203 -NTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFV----APMKHRRSAL 256

Query: 197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 248
              +H  R + V GG     F + +   D  T+ WS       + +GR+G  
Sbjct: 257 GITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWS---EVTRMTSGRSGVG 304

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  104 bits (261), Expect = 4e-25
 Identities = 52/302 (17%), Positives = 87/302 (28%), Gaps = 57/302 (18%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGR----FLSDVQVFDLRSLAWSNL 68
             W+ L        PR   A  V    LY VGG  N        S +  ++  +  WS  
Sbjct: 49  GTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP- 104

Query: 69  RLETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 124
                                PM    +   +      +  +GG +     + + R+ + 
Sbjct: 105 -------------------CAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERY-EP 144

Query: 125 ETN---LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD 181
           E +   L   M T       R G  V ++   L   GG D + + LN       E   W 
Sbjct: 145 ERDEWHLVAPMLTR------RIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEW- 196

Query: 182 AVEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD 239
                        R      +  +  +   GG       N +   D++T  W+       
Sbjct: 197 ----RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAP 248

Query: 240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 299
           +   R+           Y++GG D +         +     WS +T +         G+ 
Sbjct: 249 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVG 304

Query: 300 VC 301
           V 
Sbjct: 305 VA 306

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  110 bits (277), Expect = 3e-27
 Identities = 47/320 (14%), Positives = 87/320 (27%), Gaps = 63/320 (19%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
             W  +         R   A   +D  +YI+GGS     +  +  +++   +W +     
Sbjct: 34  YSWTDIR---CPFEKRRDAACVFWDNVVYILGGS-QLFPIKRMDCYNVVKDSWYS----- 84

Query: 73  ELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN- 127
                                            K+   GG    +S   +    D  T  
Sbjct: 85  ---------------KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129

Query: 128 --LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGED---RSRKLLNDVHFLDLETMTWDA 182
                 M T       R  H +      + + GG      S ++LN     D  T TW  
Sbjct: 130 WHTKPSMLTQ------RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-- 181

Query: 183 VEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
              T+  P    R +H         +   GG +     +++   D++ NEW        +
Sbjct: 182 ---TELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM---VSPM 234

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
                      +    Y++ G          +  N     W   +       + +  ++ 
Sbjct: 235 PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS------KVRAFPVTS 288

Query: 301 CSAIIEGEHHLVAFGGYNGK 320
           C   +      V   G N +
Sbjct: 289 CLICV------VDTCGANEE 302

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  104 bits (261), Expect = 4e-25
 Identities = 46/306 (15%), Positives = 90/306 (29%), Gaps = 60/306 (19%)

Query: 26  SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85
           S   +      D ++ + GGS+        + F+ +  +W++                  
Sbjct: 1   SMGTRPRRKKHDYRIALFGGSQ----PQSCRYFNPKDYSWTD------------------ 38

Query: 86  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKV 138
             +        D   V W   + ILGG          +   ++  +              
Sbjct: 39  --IRCPFEKRRDAACVFWDNVVYILGGSQLFPIKR--MDCYNVVKDSWYSKLGP------ 88

Query: 139 PVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHS 197
           P  R   +      ++   GG +     L      D  T +W             R  H 
Sbjct: 89  PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK----PSMLTQRCSHG 144

Query: 198 AALHANRYLIVFGGC----SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID 253
                N  + V GG           N   V D  T  W++      ++  R  H  + + 
Sbjct: 145 MVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIEARKNHGLVFVK 200

Query: 254 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA 313
           +  + VGG +   G       ++    W +++      P+  +G++V  A +     +  
Sbjct: 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS------PMPWKGVTVKCAAVGS--IVYV 252

Query: 314 FGGYNG 319
             G+ G
Sbjct: 253 LAGFQG 258

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 31/143 (21%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
              R  H       K++ VGG      L +V+ +D++   W                   
Sbjct: 188 IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM----------------- 230

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV 140
              + PM            G+ + +L G         I+ + + ET+       + KV  
Sbjct: 231 ---VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEY-NTETD---KWVANSKVRA 283

Query: 141 TRGGHSVTLVGSRLIIFGGEDRS 163
                 +  V   +   G  + +
Sbjct: 284 FPVTSCLICV---VDTCGANEET 303

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  108 bits (273), Expect = 1e-26
 Identities = 56/284 (19%), Positives = 90/284 (31%), Gaps = 49/284 (17%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
           + W  +      PS R +         ++ VGG      +  V  +D     W++     
Sbjct: 40  ERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS----- 91

Query: 73  ELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN- 127
                          +  M    S          L  +GG    +  S +  + ++++N 
Sbjct: 92  ---------------VANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAY-NIKSNE 135

Query: 128 --LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVE 184
                 M T       R    V +VG  L   GG D  SR+ L+ V   +  T  W    
Sbjct: 136 WFHVAPMNTR------RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW---- 185

Query: 185 VTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 242
            T        R      +  N  L   GG    +    + V D  TN W Q     D+  
Sbjct: 186 -TYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ---VADMNM 240

Query: 243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286
            R       ++   Y+VGG D +         N T   W++++S
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSS 284

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  107 bits (269), Expect = 3e-26
 Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 57/314 (18%)

Query: 26  SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85
           S R +    +   KL +V G +  + +  V+ +D +   W                    
Sbjct: 3   SVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQ------------------ 44

Query: 86  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKV 138
             +  +        MV     +  +GG         +  + D   +       M      
Sbjct: 45  --VAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSY-DPVKDQWTSVANM------ 95

Query: 139 PVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHS 197
              R      ++   L   GG D S   L+ V   ++++  W  V     P    R    
Sbjct: 96  RDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHV----APMNTRRSSVG 150

Query: 198 AALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 255
             +     L   GG   +     + +   +  TNEW+      ++ T R+G     ++  
Sbjct: 151 VGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRSGAGVGVLNNL 206

Query: 256 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEGEHHLVAF 314
            Y VGG D     +   V + T  AW  +  +   R        +     + G   L   
Sbjct: 207 LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-------NAGVCAVNG--LLYVV 257

Query: 315 GGYNG-KYNNEVFV 327
           GG +G      V  
Sbjct: 258 GGDDGSCNLASVEY 271

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 38/150 (25%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
           + W  +       + R      V +  LY VGG         V+V+D  + AW       
Sbjct: 183 NEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR------ 233

Query: 73  ELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN- 127
                          +  M     +  +      L ++GG     + + +  + +  T+ 
Sbjct: 234 --------------QVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYY-NPTTDK 278

Query: 128 ---LCGVMETSGKVPVTRGGHSVTLVGSRL 154
              +   M         R    VT++  RL
Sbjct: 279 WTVVSSCM------STGRSYAGVTVIDKRL 302

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  102 bits (256), Expect = 2e-24
 Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 71/332 (21%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGR------FLSDVQVFDLRSLAWS 66
           +      +S     P+   +    + ++++ GG             +    FD     W 
Sbjct: 23  NECYCASLS--SQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80

Query: 67  NLRLETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMI--VR 120
                                +PP+        + +    + ++GG   K  +  +  V 
Sbjct: 81  G--------------------MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVM 120

Query: 121 FIDLETN---LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 177
             D  +        +      P    GH+V      + + GG+   RK LN +   D + 
Sbjct: 121 CYDRLSFKWGESDPL------PYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK 174

Query: 178 MTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
             W  +     P    R    A +H +  +IV  G + +   +   V  +  N+W+    
Sbjct: 175 FEWKEL----APMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP--- 226

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI---------VLNMTKLAWSILTSV 287
                  R+  + +++    Y +GG          +           N  +  W  +   
Sbjct: 227 FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL-- 284

Query: 288 KGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 319
                  +               L        
Sbjct: 285 ----REIAYAAGATFL----PVRLNVLRLTKM 308

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 21/149 (14%), Positives = 40/149 (26%), Gaps = 27/149 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
            + R    A V D ++ +  G  +    S  +V+ +    W+                  
Sbjct: 184 QTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA------------------ 225

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET---SGK 137
                      S   +V     L  +GG     ++S  +   +L        E     G 
Sbjct: 226 --PFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283

Query: 138 VPVTRGGHSVTLVGSRLIIFGGEDRSRKL 166
           +         T +  RL +      +  L
Sbjct: 284 LREIAYAAGATFLPVRLNVLRLTKMAENL 312

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  101 bits (253), Expect = 8e-24
 Identities = 42/282 (14%), Positives = 70/282 (24%), Gaps = 60/282 (21%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
           + WV L      P     H   V + K Y+ GG     F    +  +      +      
Sbjct: 96  NSWVKLM--SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST------ 147

Query: 73  ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LC 129
                          +  ++ H                    +  ++ F D  T      
Sbjct: 148 --------------AIDKINAHYFD---------KKAEDYFFNKFLLSF-DPSTQQWSYA 183

Query: 130 GVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP 189
           G     G       G +V   G +  +  GE +     + V  LD         ++    
Sbjct: 184 GESPWYG-----TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238

Query: 190 PAPRYDHSAALHANRYLIVFGGCSHS-----------------IFFNDLHVLDLQTNEWS 232
                    A  +N  LI  GG                            +      +W 
Sbjct: 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298

Query: 233 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274
           +    G+L  GRA    +  + +  I+GG           VL
Sbjct: 299 K---SGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 96.9 bits (241), Expect = 3e-22
 Identities = 50/329 (15%), Positives = 85/329 (25%), Gaps = 60/329 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
           P P      A+ +  +YI  GS    +         +   W+ L                
Sbjct: 7   PVPFKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTAL---AAFPG-------- 53

Query: 85  LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIV-----RFIDLETN----LCGVMETS 135
                P            L + GG  K S     V     ++ + +TN    L       
Sbjct: 54  ----GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKY-NPKTNSWVKLMSHA--- 105

Query: 136 GKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195
              P+   GH   +   +  + GG +++         L+       A+       A  +D
Sbjct: 106 ---PMGMAGHVTFVHNGKAYVTGGVNQNI-FNGYFEDLNEAGKDSTAI---DKINAHYFD 158

Query: 196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL-VTGRAGHAGITIDE 254
                                F   L   D  T +WS     G+    G AG A +   +
Sbjct: 159 K--------------KAEDYFFNKFLLSFDPSTQQWSY---AGESPWYGTAGAAVVNKGD 201

Query: 255 NWYIVGGGDNNNG-CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA 313
             +++ G             L+ T             +P    G     +       L+ 
Sbjct: 202 KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS----NDSLIF 257

Query: 314 FGGYNGKYNNEVFVMRLKPRDIPRPKIFQ 342
            GG   K + E +            K + 
Sbjct: 258 AGGAGFKGSRENYQNGKNYAHEGLKKSYS 286

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 44/327 (13%), Positives = 83/327 (25%), Gaps = 58/327 (17%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNG-----RFLSDVQVFDLRSLAWSNLRLETELDADKT 79
             PR +  +A  D  LY+ GG         +  +DV  ++ ++ +W  L           
Sbjct: 53  GGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP------ 106

Query: 80  EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 139
                      M+ H       K  + GG  +   +                        
Sbjct: 107 ---------MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDL------------------ 139

Query: 140 VTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAA 199
              G  S  +       F  +         +   D  T  W      ++P       +  
Sbjct: 140 NEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQW--SYAGESPWYGTAGAAVV 197

Query: 200 LHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHAGITIDENWY 257
                   +  G     +  + +  LD   N     ++       G AG      +++  
Sbjct: 198 NK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLI 256

Query: 258 IVG-----GGDNNNGCQETIVLNMTKLAWSILTSVKGRN------PLASEGLSVCSAIIE 306
             G     G   N    +       K ++S    +           L+       S    
Sbjct: 257 FAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN 316

Query: 307 GEHHLVAFGGYN--GKYNNEVFVMRLK 331
               L+  GG    GK   +  ++ +K
Sbjct: 317 NS--LLIIGGETAGGKAVTDSVLITVK 341

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 22/179 (12%), Positives = 42/179 (23%), Gaps = 26/179 (14%)

Query: 26  SPRYKHAAAVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
                 A      K +++ G ++ G     V   D         +L      D       
Sbjct: 189 YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD------- 241

Query: 85  LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR--------FIDLETNLCGVMETS- 135
                 ++          L+  GG   K S                   +    +     
Sbjct: 242 -----GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296

Query: 136 ----GKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP 190
               G++   R         + L+I GGE    K + D   + ++        +     
Sbjct: 297 WDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH 355

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 99.3 bits (248), Expect = 3e-23
 Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 51/273 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGG------SRNGRFLSDVQVFDLRSLAWSNLRLETELDADK 78
             PR   +      ++Y+VGG      +++    S     D  S  W             
Sbjct: 44  QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG----------- 92

Query: 79  TEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSM-IV-RFIDLETN---LC 129
                    LPP+        + +   K+ ++ G   ++  S+  V  + D         
Sbjct: 93  ---------LPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY-DPVAAKWSEV 142

Query: 130 GVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP 189
             +      P+   GH+V      +   GG+   +K  N V   + +   W  +     P
Sbjct: 143 KNL------PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL----AP 192

Query: 190 -PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 248
              PR     A+H    +++ GG +       +   DL+TN+W       +    R+  +
Sbjct: 193 MKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV---MTEFPQERSSIS 248

Query: 249 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 281
            +++  + Y +GG        +          W
Sbjct: 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIW 281

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 83.2 bits (206), Expect = 8e-18
 Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 60/245 (24%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGS--RNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82
           PS R        D K+Y+V G   +    L  V  +D  +  WS                
Sbjct: 97  PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS---------------- 140

Query: 83  GLLEVLPPM----SDHCMVKWGTKLLILGGHY--KKSSDSMIVRFIDLETN---LCGVME 133
                +  +      H ++     +  LGG    KK ++ +   + + +         M+
Sbjct: 141 ----EVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF-IY-NPKKGDWKDLAPMK 194

Query: 134 TSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAP 192
           T       R    V +   +++I GG      L   V   DL+T  W+ +    T  P  
Sbjct: 195 TP------RSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVM----TEFPQE 243

Query: 193 RYDHSAALHANRYLIVFGGCSH---------SIFFNDLHVLDLQTNEWSQPEIKGDLVTG 243
           R   S    A   L   GG +              ND+   +    EW+       L   
Sbjct: 244 RSSISLVSLAGS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEI 297

Query: 244 RAGHA 248
           R    
Sbjct: 298 RYASG 302

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 83.2 bits (206), Expect = 9e-18
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 48/196 (24%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG 83
           P   Y H     +  +Y +GG  +  +  + V +++ +   W +                
Sbjct: 146 PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD---------------- 189

Query: 84  LLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSG 136
               L PM    S   +     K++I GG  +    + +  F DL+TN   +        
Sbjct: 190 ----LAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAF-DLKTNKWEVMTEF---- 240

Query: 137 KVPVTRGGHSVTLVGSRLIIFGGEDRSRKL--------LNDVHFLDLETMTWDAVEVTQT 188
             P  R   S+  +   L   GG    +          +ND+   + +   W        
Sbjct: 241 --PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW-----AGM 293

Query: 189 PPAPRYDHSAALHANR 204
               RY   A+  A R
Sbjct: 294 LKEIRYASGASCLATR 309

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 27/140 (19%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
            +PR     A+   K+ I GG       + V+ FDL++  W                   
Sbjct: 194 KTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE------------------ 235

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET---SGK 137
             V+       S   +V     L  +GG      +S      ++        +    +G 
Sbjct: 236 --VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293

Query: 138 VPVTRGGHSVTLVGSRLIIF 157
           +   R     + + +RL +F
Sbjct: 294 LKEIRYASGASCLATRLNLF 313

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 28/132 (21%)

Query: 206 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 265
           +++    +   +       D   NE             R   + +T     Y+VGG   +
Sbjct: 18  ILLVNDTAAVAY-------DPMENECYLT--ALAEQIPRNHSSIVTQQNQVYVVGGLYVD 68

Query: 266 NGCQETIV------LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 319
              ++  +      L+     W  L       PL S         ++    +    G + 
Sbjct: 69  EENKDQPLQSYFFQLDNVSSEWVGLP------PLPSARCLFGLGEVDD--KIYVVAGKDL 120

Query: 320 KYNN-----EVF 326
           +          +
Sbjct: 121 QTEASLDSVLCY 132

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 61.1 bits (147), Expect = 4e-10
 Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 36/269 (13%)

Query: 25  PSPRYKHAAAVF-DQKLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82
              R   ++A   D +++ +GGS +G  F  + +V+   S  W++L        +    +
Sbjct: 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL---PNAKVNPMLTA 340

Query: 83  GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTR 142
               +    +   +  W    +   G     S +M   +    T+  G ++++GK    R
Sbjct: 341 DKQGLYRSDNHAWLFGWKKGSVFQAG----PSTAMNWYY----TSGSGDVKSAGKRQSNR 392

Query: 143 GGHSVTLVGS---------RLIIFGG--EDRSRKLLNDVHFLDLETMTWDAVEVTQTP-- 189
           G     + G+         +++ FGG  + +      + H + L         V  +   
Sbjct: 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL 452

Query: 190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVL------DLQTNEWSQPEIKGDLVTG 243
              R  H++ +  +    + GG    I F D   +        + + + +   +      
Sbjct: 453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSIV 509

Query: 244 RAGHAGITIDEN-WYIVGGGDNNNGCQET 271
           R  H+   +  +     GGG     C   
Sbjct: 510 RVYHSISLLLPDGRVFNGGGGLCGDCTTN 538

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 454
           ++    +  S++++ + N   +E+   + ++ S+  K+   +Q  L AER         I
Sbjct: 33  RKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI 92

Query: 455 AELQKMLESSQTIENEVQILRQQKSAFEQEMERA 488
            +LQ  +    +++ EV+ L+      E E + A
Sbjct: 93  GDLQARI---TSLQEEVKHLKHNLEKVEGERKEA 123

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 33/90 (36%)

Query: 401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460
           L+  L E         +    +  +H+E+SK +S ++      + R   LE   ++  K 
Sbjct: 11  LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKD 70

Query: 461 LESSQTIENEVQILRQQKSAFEQEMERATS 490
               Q I    +  R   S    +++   +
Sbjct: 71  YYQLQAILEAERRDRGHDSEMIGDLQARIT 100

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 17/105 (16%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           ++++     ++  K   +    +++      R      +    +L   ++S+Q ++   +
Sbjct: 51  RELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110

Query: 445 SRCFKLEAQIAELQKMLESSQTIENEVQI-LRQQKSAFEQEMERA 488
               K+E +  E Q ML  S+  +N ++I L  +  + +Q +E+ 
Sbjct: 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 74/504 (14%), Positives = 131/504 (25%), Gaps = 173/504 (34%)

Query: 28  RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELD---ADKTEDSGL 84
           +YK   +VF+             F+ +    D++ +  S L  E E+D     K   SG 
Sbjct: 17  QYKDILSVFEDA-----------FVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGT 64

Query: 85  L-------------------EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 125
           L                   EVL       M    T+        ++ S      +I+  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-------QRQPSMMT-RMYIEQR 116

Query: 126 TNLCGVMETSGKVPVTR-----------------------G----GHSVTLVGSRL---- 154
             L    +   K  V+R                       G    G +  +         
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYK 175

Query: 155 -----------IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN 203
                      +     +    +L  +  L  +           +       HS      
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 204 RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG-D-----LVTGRAGHAGITIDENWY 257
           R L          + N L VL    N  +       +     L+T R     +T D    
Sbjct: 236 RLL------KSKPYENCLLVLL---NVQNAKAWNAFNLSCKILLTTR--FKQVT-D---- 279

Query: 258 IVGGGDNNNGCQETIVLNMTK------LAWSILTS-------VKGRNPLASEGLSVCSA- 303
            +      +   +   + +T       L   +          V   NP     LS+ +  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR---LSIIAES 336

Query: 304 IIEGEHHLVAFGGYNG-KYNN--EVFVMRLKPRDIPRPK-----IFQSPAAAAAAASVTA 355
           I +G      +   N  K     E  +  L+P +  R       +F              
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFP------------- 382

Query: 356 AYALAKSEKLDIP-KTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSR 414
                      IP   LS     I  D+ + DV   ++      ++ + SL E + + S 
Sbjct: 383 -------PSAHIPTILLSL----IWFDVIKSDVMVVVN------KLHKYSLVEKQPKEST 425

Query: 415 F---------REKIDEVNSTHSEL 429
                     + K++   + H  +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSI 449

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 360  AKSEKLDIPKTLSSKFAGIGNDLSEK--DVRTDIDAIKEDKRVLELSLTEVRTENSRFRE 417
             + EK      L +K   + ++L  +          +++ KR LE   +++  + +  + 
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081

Query: 418  KIDEVNSTHSELSKELSSVQGQLVAERSRCFK-------LEAQIAELQKMLESSQT---- 466
            +I E+ +  ++  +EL +   +L  E S+          LE+ I++LQ+ LES +     
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 467  IENEVQILRQQKSAFEQEMERATS 490
             E + + L ++  A + E+E    
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 395  KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC------- 447
            + +K   +  + ++  +     ++ +++      L + +S +   L  E  +        
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 448  FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 490
             K E+ I+EL+  L+     E   Q L + K   E E      
Sbjct: 1035 NKHESMISELEVRLKKE---EKSRQELEKIKRKLEGESSDLHE 1074

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 385  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ----- 439
             D+   I  ++     L+  L +   E      ++++  S  +   K++  ++       
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 440  --LVAERSRCFKLEAQ-------IAELQKMLESSQTIENEVQILRQQKSAFEQE 484
              L +E++   K E Q       +  L+  LE +       Q LR      + +
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           +D     + +     ++E  L            K  E+      ++  L S++ Q     
Sbjct: 156 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYS 215

Query: 445 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEMERA 488
            +  K E +I  L   L+ ++T     E  V  L +     E E+   
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450
           +DAIK+  ++L+L                        +L  EL S+Q +L A      K 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 451 EAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERA 488
              + + Q+ LE ++      E +V  L ++   FE+E++RA
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 14/110 (12%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
             ++  + A +++      +L + + +     +K  +  +  + L++ +   + +L   +
Sbjct: 44  VSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103

Query: 445 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEMERATS 490
            R      ++ E +K  + S+     IE+  Q   ++    E +++ A  
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH 153

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 385  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
            K     ++  K+    LE  + +        + KIDE N  +  L +++++++     E 
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQ-------LQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 445  SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 490
                KL + +  L+   E ++   N V  L+++ +   +E+ +  +
Sbjct: 963  E---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.69
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.38
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.08
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.01
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.9
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.87
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.79
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.59
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.58
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.56
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.56
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.54
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.49
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.47
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.45
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.42
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.39
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.37
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.37
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.34
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.32
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.3
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.26
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.23
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.21
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.16
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.12
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.1
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.08
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.07
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.01
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.97
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.88
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	96.84
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.84
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.8
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.76
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.72
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.68
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.66
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.65
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.51
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.5
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.43
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.41
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	96.41
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.23
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.22
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.16
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.13
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.1
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.08
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.08
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.03
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.03
3jro_A	753	Fusion protein of protein transport protein SEC13	96.02
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.98
3jro_A	753	Fusion protein of protein transport protein SEC13	95.98
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.97
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.96
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.96
3ott_A	758	Two-component system sensor histidine kinase; beta	95.92
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	95.92
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.91
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.89
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.88
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.87
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.85
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.82
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.81
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.76
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.75
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.71
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.69
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.68
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.67
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.66
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.66
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.66
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.65
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.62
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.61
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.61
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.6
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.59
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.57
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	95.56
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.54
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.47
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	95.42
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.39
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.36
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	95.36
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.34
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.3
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.29
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	95.24
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.23
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	95.22
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.22
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.16
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.11
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.03
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	95.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.94
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	94.94
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	94.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.89
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.87
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.83
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.79
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.77
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	94.77
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	94.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.75
3ott_A	758	Two-component system sensor histidine kinase; beta	94.72
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	94.68
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.68
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.64
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.62
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	94.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.56
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.55
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.5
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	94.47
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	94.44
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	94.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.38
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	94.33
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.33
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.31
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.29
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.25
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	94.22
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	94.18
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	94.14
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	94.13
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.06
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	94.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	93.98
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	93.97
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	93.86
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.81
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	93.68
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.49
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	93.47
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	93.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.34
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.3
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.29
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	93.27
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	93.08
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	92.94
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.93
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	92.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	92.8
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	92.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	92.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.65
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	92.53
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.47
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.44
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	92.34
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	92.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	92.26
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	92.25
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	92.19
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	92.06
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	92.01
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.85
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	91.76
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.75
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	91.69
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	91.66
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	91.64
2pm7_B	297	Protein transport protein SEC13, protein transport	91.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	91.61
3bas_A	89	Myosin heavy chain, striated muscle/general contro	91.6
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	91.59
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	91.51
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.45
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	91.07
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	91.03
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	90.83
2p4o_A	306	Hypothetical protein; putative lactonase, structur	90.8
1k32_A	1045	Tricorn protease; protein degradation, substrate g	90.74
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.71
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	90.6
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	90.59
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	90.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	90.58
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	90.57
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	90.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	90.35
3lay_A	175	Zinc resistance-associated protein; salmonella typ	90.3
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	90.3
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	90.29
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	90.27
2pm7_B	297	Protein transport protein SEC13, protein transport	90.1
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	90.03
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	89.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	89.82
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	89.78
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	89.72
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	89.51
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	89.44
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	89.35
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	89.33
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	89.29
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.19
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	89.15
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	88.93
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	88.67
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.61
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	88.48
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	88.39
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.14
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	88.12
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	88.1
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	88.01
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	87.93
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	87.74
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	87.66
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	87.58
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	87.34
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	87.29
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	87.24
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	87.2
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	87.07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	86.99
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	86.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	86.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	86.43
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	86.41
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	86.37
3ibp_A	302	Chromosome partition protein MUKB; structural main	86.26
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	86.13
1uix_A	71	RHO-associated kinase; coiled-coil, transferase; H	85.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	85.67
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	85.67
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	85.47
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	85.25
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	85.15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	85.13
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	84.51
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	84.48
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	84.22
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	84.12
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	84.12
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	84.03
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	83.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	83.66
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	83.47
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	83.34
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	83.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	83.17
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	82.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	82.43
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	82.3
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	82.29
3vp9_A	92	General transcriptional corepressor TUP1; four hel	82.29
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	82.14
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	81.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	81.55
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	81.24
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	81.1
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	80.85
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	80.04

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=7.8e-45  Score=352.51  Aligned_cols=289  Identities=19%  Similarity=0.258  Sum_probs=238.6

Q ss_pred             CCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECC
Q 010551           22 GARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT  101 (507)
Q Consensus        22 ~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~  101 (507)
                      ++.|.+|..|+++.+++.||++||. .+...+++++||+.+++|..++.+                |.+|.+|+++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~   71 (308)
T 1zgk_A            9 HSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGG   71 (308)
T ss_dssp             ------------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETT
T ss_pred             ccCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCC----------------CcccccceEEEECC
Confidence            3578889999999999999999998 566789999999999999998643                56799999999999


Q ss_pred             EEEEEeccC---CCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          102 KLLILGGHY---KKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       102 ~lyv~GG~~---~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +||++||..   ......+++++||+.+++|+.+.   ++|.+|..|+++.++++||++||.+.. ...+++++||+.++
T Consensus        72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERD  147 (308)
T ss_dssp             EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTT
T ss_pred             EEEEECCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCC
Confidence            999999984   22234678999999999999997   899999999999999999999998754 35789999999999


Q ss_pred             cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEE
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      +|+.+.   ++|.+|..|+++++ +++||||||.+.....+++++||+.+++|+.+   .++|.+|..|++++++++|||
T Consensus       148 ~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv  220 (308)
T 1zgk_A          148 EWHLVA---PMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNCIYA  220 (308)
T ss_dssp             EEEECC---CCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEE
T ss_pred             eEeECC---CCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---CCCCCccccceEEEECCEEEE
Confidence            999997   47889999999988 56799999998777789999999999999997   578899999999999999999


Q ss_pred             EeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCC
Q 010551          259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPR  337 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~  337 (507)
                      +||.+.....+++++||+.+++|+.++.+|    .++.++  +++++.+  .|||+||.++. ..+++++||+..+.|..
T Consensus       221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p----~~r~~~--~~~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          221 AGGYDGQDQLNSVERYDVETETWTFVAPMK----HRRSAL--GITVHQG--RIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEECCCCS----SCCBSC--EEEEETT--EEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             EeCCCCCCccceEEEEeCCCCcEEECCCCC----CCccce--EEEEECC--EEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            999887767889999999999999987653    334344  4445544  79999998764 57899999999999998


Q ss_pred             CcccCCchh
Q 010551          338 PKIFQSPAA  346 (507)
Q Consensus       338 ~~~~~~~~~  346 (507)
                      ...++.++.
T Consensus       293 ~~~~p~~r~  301 (308)
T 1zgk_A          293 VTRMTSGRS  301 (308)
T ss_dssp             EEECSSCCB
T ss_pred             cCCCCCCcc
Confidence            766665543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1e-43  Score=344.43  Aligned_cols=265  Identities=15%  Similarity=0.196  Sum_probs=236.4

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .++|+||+.+++|..++   ++|.+|.+|+++++++.||++||.. ....+++++||+.+++|..++.+           
T Consensus        24 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~-----------   88 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGP-----------   88 (306)
T ss_dssp             TSEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECC-----------
T ss_pred             ceEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCC-----------
Confidence            46899999999999998   7999999999999999999999987 67789999999999999998754           


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~  162 (507)
                           |.+|.+|++++++++||++||.+......+++++||+.+++|+.+.   ++|.+|..|+++.++++||++||.+.
T Consensus        89 -----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~  160 (306)
T 3ii7_A           89 -----PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLG  160 (306)
T ss_dssp             -----SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEES
T ss_pred             -----CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCC
Confidence                 5579999999999999999998755556889999999999999996   89999999999999999999999875


Q ss_pred             CCC---ccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCC
Q 010551          163 SRK---LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       163 ~~~---~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      ...   ..+++++||+.+++|+.+.   ++|.+|..|+++.+ +++|||+||.+.....+++++||+.+++|+.+   ++
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~---~~  233 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV---SP  233 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC---CC
T ss_pred             CCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC---CC
Confidence            543   2899999999999999997   47889999999998 55699999998777789999999999999997   57


Q ss_pred             CCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceE
Q 010551          240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC  301 (507)
Q Consensus       240 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~  301 (507)
                      +|.+|..|++++++++|||+||.++....+++++||+.+++|+.++.++    .++.+++++
T Consensus       234 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~  291 (306)
T 3ii7_A          234 MPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR----AFPVTSCLI  291 (306)
T ss_dssp             CSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE----CCSCTTCEE
T ss_pred             CCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc----cccceeEEE
Confidence            8899999999999999999999887777889999999999999998774    344455444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=341.98  Aligned_cols=253  Identities=19%  Similarity=0.284  Sum_probs=229.2

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .++|+||+.+++|..++   ++|.+|.+|+++++++.||++||..+....+++++||+.+++|+.++.+           
T Consensus        30 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-----------   95 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM-----------   95 (302)
T ss_dssp             CCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC-----------
T ss_pred             CcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC-----------
Confidence            46899999999999998   7999999999999999999999988777889999999999999998754           


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~  162 (507)
                           |.+|.+|++++++++||++||..... ..+++++||+.+++|+.+.   ++|.+|.+|++++++++||++||.+.
T Consensus        96 -----p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           96 -----RDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             -----SSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             -----CccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCC
Confidence                 45799999999999999999987644 3789999999999999997   88999999999999999999999876


Q ss_pred             CC-CccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCC
Q 010551          163 SR-KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV  241 (507)
Q Consensus       163 ~~-~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p  241 (507)
                      .. ...+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.++....+++++||+.+++|+.+   .++|
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~~  239 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV---ADMN  239 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE---CCCS
T ss_pred             CCCccccEEEEEeCCCCcEEECC---CCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeC---CCCC
Confidence            53 35789999999999999996   47889999999888 55699999998777789999999999999997   5788


Q ss_pred             CCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551          242 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       242 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      .+|..|+++.++++|||+||.+....++++++||+.+++|+.++
T Consensus       240 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          240 MCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred             CccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence            89999999999999999999877667889999999999999986

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.5e-43  Score=343.51  Aligned_cols=255  Identities=18%  Similarity=0.223  Sum_probs=230.8

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCC----CCCccCCceEEEEccCCceeeeccccccCCCc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGS----RNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~----~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~   78 (507)
                      .++|+||+.+++|..++   ++|.+|.+|+++++++.||++||.    .+....+++++||+.+++|+.++++       
T Consensus        39 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-------  108 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM-------  108 (308)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC-------
T ss_pred             ceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC-------
Confidence            46899999999999997   799999999999999999999997    5667789999999999999998754       


Q ss_pred             cccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEc
Q 010551           79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFG  158 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~G  158 (507)
                               |.+|.+|++++++++||++||..... ..+++++||+.+++|+.+.   ++|.+|.+|+++.++++||+||
T Consensus       109 ---------p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~G  175 (308)
T 1zgk_A          109 ---------SVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVG  175 (308)
T ss_dssp             ---------SSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEC
T ss_pred             ---------CcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEe
Confidence                     45799999999999999999987643 3678999999999999997   7999999999999999999999


Q ss_pred             CCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCC
Q 010551          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       159 G~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      |.+.... .+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.+.....+++++||+.+++|+.+   .
T Consensus       176 G~~~~~~-~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~  247 (308)
T 1zgk_A          176 GFDGTNR-LNSAECYYPERNEWRMIT---AMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV---A  247 (308)
T ss_dssp             CBCSSCB-CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC---C
T ss_pred             CCCCCCc-CceEEEEeCCCCeEeeCC---CCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC---C
Confidence            9976543 899999999999999986   47889999999988 56699999998777889999999999999997   4


Q ss_pred             CCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~  288 (507)
                      ++|.+|..|++++++++|||+||.+.....+++++||+.+++|+.++.+|
T Consensus       248 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  297 (308)
T 1zgk_A          248 PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  297 (308)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence            78899999999999999999999887777889999999999999997764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=9e-43  Score=336.88  Aligned_cols=255  Identities=18%  Similarity=0.293  Sum_probs=231.2

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc---eeeeccccccCCCcc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA---WSNLRLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~---W~~~~~~~~~~~~~~   79 (507)
                      .++|+||+.+++|..++   ++|.+|.+|+++++++.||++||..+....+++++||+.+++   |+.++.+        
T Consensus        31 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~--------   99 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM--------   99 (301)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC--------
T ss_pred             eEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC--------
Confidence            46899999999999998   689999999999999999999998877788999999999999   9998654        


Q ss_pred             ccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcC
Q 010551           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGG  159 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG  159 (507)
                              |.+|.+|+++.++++||++||...... .+++++||+.+++|+.+.   ++|.+|.+|++++++++||++||
T Consensus       100 --------p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG  167 (301)
T 2vpj_A          100 --------NVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGG  167 (301)
T ss_dssp             --------SSCCBSCEEEEETTEEEEECCBCSSCB-CCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECC
T ss_pred             --------CCCccceeEEEECCEEEEEcccCCCcc-cceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECC
Confidence                    557999999999999999999886543 789999999999999997   78999999999999999999999


Q ss_pred             CCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCC
Q 010551          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       160 ~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      .+... ..+++++||+.+++|+.+.   ++|.+|..|+++.+ +++|||+||.+.....+++++||+.+++|+.+   .+
T Consensus       168 ~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~  239 (301)
T 2vpj_A          168 YDGLN-ILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV---TS  239 (301)
T ss_dssp             BCSSC-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE---CC
T ss_pred             CCCCc-ccceEEEEeCCCCcEEeCC---CCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC---CC
Confidence            87654 5899999999999999996   47889999999988 55699999998777789999999999999997   57


Q ss_pred             CCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551          240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       240 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~  288 (507)
                      +|.+|..|+++.++++|||+||.+.....+++++||+.+++|+.++.+|
T Consensus       240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~  288 (301)
T 2vpj_A          240 MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG  288 (301)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence            8899999999999999999999877766789999999999999998764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=345.42  Aligned_cols=276  Identities=15%  Similarity=0.202  Sum_probs=232.5

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC------CCccCCceEEEEccCCceeeeccccccCC
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR------NGRFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~------~~~~~~~~~~~d~~~~~W~~~~~~~~~~~   76 (507)
                      .++|+|||.+++|...+.  +.|.+|.+|+++++++.||++||..      .....+++++||+.+++|+.++++     
T Consensus        13 ~~~~~yd~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----   85 (315)
T 4asc_A           13 EGAVAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL-----   85 (315)
T ss_dssp             TEEEEEETTTTEEEEEEC--CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB-----
T ss_pred             CceEEECCCCCeEecCCC--CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC-----
Confidence            468999999999997442  4477999999999999999999951      123345699999999999988754     


Q ss_pred             CccccCCCcCCCCCccceeEEEECCEEEEEeccCC--CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEE
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK--KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRL  154 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~i  154 (507)
                                 |.+|.+|++++++++||++||...  .....+++++||+.+++|+.+.   ++|.+|.+|+++.++++|
T Consensus        86 -----------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i  151 (315)
T 4asc_A           86 -----------PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLV  151 (315)
T ss_dssp             -----------SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEE
T ss_pred             -----------CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEE
Confidence                       557999999999999999999763  3345789999999999999987   799999999999999999


Q ss_pred             EEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          155 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       155 y~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      |+|||.+......+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.+.....+++++||+.+++|+.+
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF  227 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence            999999666667899999999999999987   47889999999988 45699999998777889999999999999997


Q ss_pred             ccCCCCCCCCCccEEEEECCeEEEEeccCCC---------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEE
Q 010551          235 EIKGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII  305 (507)
Q Consensus       235 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~  305 (507)
                         .++|.+|..|+++.++++|||+||.+..         ..++++++||+.+++|+.+.      +.++.++.++  ++
T Consensus       228 ---~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~r~~~~~~--~~  296 (315)
T 4asc_A          228 ---EAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL------REIAYAAGAT--FL  296 (315)
T ss_dssp             ---CCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE------SCSSCCSSCE--EE
T ss_pred             ---CCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc------cCCcCccceE--Ee
Confidence               5788999999999999999999997531         23578999999999999983      2344555544  34


Q ss_pred             cCceEEEEEcc
Q 010551          306 EGEHHLVAFGG  316 (507)
Q Consensus       306 ~~~~~l~v~GG  316 (507)
                      +  +.|++++.
T Consensus       297 ~--~~l~v~~~  305 (315)
T 4asc_A          297 P--VRLNVLRL  305 (315)
T ss_dssp             E--EEECGGGS
T ss_pred             C--CEEEEEEe
Confidence            3  36777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=336.09  Aligned_cols=270  Identities=15%  Similarity=0.258  Sum_probs=233.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      .+.||++||...   .+++++||+.+++|..++.+                |.+|.+|++++++++||++||..  ....
T Consensus        11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~--~~~~   69 (306)
T 3ii7_A           11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCP----------------FEKRRDAACVFWDNVVYILGGSQ--LFPI   69 (306)
T ss_dssp             CCEEEEEECCSS---TTSEEEEETTTTEEEECCCC----------------SCCCBSCEEEEETTEEEEECCBS--SSBC
T ss_pred             cceEEEEeCCCC---CceEEEecCCCCCEecCCCC----------------CcccceeEEEEECCEEEEEeCCC--CCCc
Confidence            478999999765   78999999999999988754                55799999999999999999988  4457


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~  196 (507)
                      +++++||+.+++|+.+.   ++|.+|.+|+++.++++||+|||.+......+++++||+.+++|+.+.   ++|.+|..|
T Consensus        70 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~  143 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSH  143 (306)
T ss_dssp             CEEEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSC
T ss_pred             ceEEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCccee
Confidence            89999999999999997   799999999999999999999999855567899999999999999996   478899999


Q ss_pred             eEEEEcCCEEEEEcCCCCCCC----CCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEE
Q 010551          197 SAALHANRYLIVFGGCSHSIF----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       197 ~~~~~~~~~l~v~GG~~~~~~----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~  272 (507)
                      +++.+ +++|||+||......    .+++++||+.+++|+.+   .++|.+|..|+++.++++|||+||.+.....++++
T Consensus       144 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~  219 (306)
T 3ii7_A          144 GMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL---CPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE  219 (306)
T ss_dssp             EEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEE
T ss_pred             EEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC---CCccchhhcceEEEECCEEEEEeCCCCCCCCceEE
Confidence            99988 556999999876655    89999999999999997   57889999999999999999999987776688999


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCCCcccCCch
Q 010551          273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPA  345 (507)
Q Consensus       273 ~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~  345 (507)
                      +||+.+++|+.++.+|.    ++.+  ++++++.+  .|||+||.++. ..+++++||+..+.|.....++.++
T Consensus       220 ~yd~~~~~W~~~~~~p~----~r~~--~~~~~~~~--~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  285 (306)
T 3ii7_A          220 YYDIKLNEWKMVSPMPW----KGVT--VKCAAVGS--IVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFP  285 (306)
T ss_dssp             EEETTTTEEEECCCCSC----CBSC--CEEEEETT--EEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCS
T ss_pred             EeeCCCCcEEECCCCCC----Cccc--eeEEEECC--EEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccccc
Confidence            99999999999976543    3334  44445544  79999998754 6789999999999999876655544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.1e-42  Score=331.24  Aligned_cols=277  Identities=17%  Similarity=0.240  Sum_probs=231.6

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCC
Q 010551           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK  111 (507)
Q Consensus        32 ~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~  111 (507)
                      ..+.+++.||++||... ...+++++||+.+++|..++.+                |.+|.+|++++++++||++||...
T Consensus        10 ~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~   72 (302)
T 2xn4_A           10 TPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAEL----------------PSRRCRAGMVYMAGLVFAVGGFNG   72 (302)
T ss_dssp             -----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCC----------------SSCCBSCEEEEETTEEEEESCBCS
T ss_pred             cccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccC----------------CcccccceEEEECCEEEEEeCcCC
Confidence            34456889999999764 4678899999999999998644                557999999999999999999875


Q ss_pred             CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          112 KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       112 ~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                      .. ..+++++||+.+++|+.++   ++|.+|..|+++.++++||+|||.+.. ..++++++||+.+++|+.+.   ++|.
T Consensus        73 ~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~  144 (302)
T 2xn4_A           73 SL-RVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVA---PMNT  144 (302)
T ss_dssp             SS-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEEC---CCSS
T ss_pred             Cc-cccceEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecC---CCCC
Confidence            54 3688999999999999998   899999999999999999999998754 35789999999999999996   4788


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCC--CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcc
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~  269 (507)
                      +|..|+++++ +++|||+||.+..  ...+++++||+.+++|+.+   .++|.+|..|++++++++|||+||.++....+
T Consensus       145 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  220 (302)
T 2xn4_A          145 RRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI---AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRK  220 (302)
T ss_dssp             CCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCBSSSSBCC
T ss_pred             cccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC---CCCccccccccEEEECCEEEEECCCCCCcccc
Confidence            9999999888 5569999998655  3578999999999999997   57889999999999999999999988766678


Q ss_pred             eEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCCCc-ccCCch
Q 010551          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPK-IFQSPA  345 (507)
Q Consensus       270 ~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~~~-~~~~~~  345 (507)
                      ++++||+.+++|+.++.++.    ++.+  +.++.+++  .|||+||.++. ..+++++||+..+.|...+ .++.++
T Consensus       221 ~~~~yd~~~~~W~~~~~~~~----~r~~--~~~~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r  290 (302)
T 2xn4_A          221 SVEVYDPTTNAWRQVADMNM----CRRN--AGVCAVNG--LLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGR  290 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSS----CCBS--CEEEEETT--EEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCC
T ss_pred             eEEEEeCCCCCEeeCCCCCC----cccc--CeEEEECC--EEEEECCcCCCcccccEEEEcCCCCeEEECCcccCccc
Confidence            99999999999999986643    3333  34445544  79999998754 5789999999999998765 444443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.8e-42  Score=337.56  Aligned_cols=274  Identities=16%  Similarity=0.234  Sum_probs=231.2

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCC------CccCCceEEEEccCCceeeeccccccCCC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETELDAD   77 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~~~~~~~   77 (507)
                      ++|+|||.+++|...+.  +.|.+|.+|+++++++.||++||...      ....+++++||+.+++|..++.+      
T Consensus        25 ~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~------   96 (318)
T 2woz_A           25 AAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL------   96 (318)
T ss_dssp             EEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB------
T ss_pred             ceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC------
Confidence            47999999999999654  45689999999999999999999531      12234599999999999998754      


Q ss_pred             ccccCCCcCCCCCccceeEEEECCEEEEEeccCC-CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEE
Q 010551           78 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLII  156 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~  156 (507)
                                |.+|.+|++++++++||++||... .....+++++||+.+++|+.+.   ++|.+|.+|++++++++||+
T Consensus        97 ----------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv  163 (318)
T 2woz_A           97 ----------PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYC  163 (318)
T ss_dssp             ----------SSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEE
T ss_pred             ----------CccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEE
Confidence                      457999999999999999999874 3345789999999999999997   89999999999999999999


Q ss_pred             EcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          157 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       157 ~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      |||.+......+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.+.....+++++||+.+++|+.+  
T Consensus       164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--  237 (318)
T 2woz_A          164 LGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM--  237 (318)
T ss_dssp             ECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC--
T ss_pred             EcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEEC--
Confidence            9998766667899999999999999997   47889999999888 45699999998777788999999999999997  


Q ss_pred             CCCCCCCCCccEEEEECCeEEEEeccCCC---------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcC
Q 010551          237 KGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG  307 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~  307 (507)
                       .++|.+|..|+++.++++|||+||.+..         ...+++|+||+.+++|+.+  +    |.++.++.++.  +  
T Consensus       238 -~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~----~~~r~~~~~~~--~--  306 (318)
T 2woz_A          238 -TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--L----KEIRYASGASC--L--  306 (318)
T ss_dssp             -CCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--E----SCCGGGTTCEE--E--
T ss_pred             -CCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--c----cccccccccee--e--
Confidence             5788899999999999999999997642         2368899999999999998  2    33455555443  3  


Q ss_pred             ceEEEEEc
Q 010551          308 EHHLVAFG  315 (507)
Q Consensus       308 ~~~l~v~G  315 (507)
                      ++.|||+.
T Consensus       307 ~~~iyi~~  314 (318)
T 2woz_A          307 ATRLNLFK  314 (318)
T ss_dssp             EEEEEGGG
T ss_pred             CCEEEEEE
Confidence            33677654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.7e-42  Score=331.86  Aligned_cols=282  Identities=19%  Similarity=0.284  Sum_probs=235.9

Q ss_pred             CCCCccccceEEEECCEEEEEcC-CCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECC
Q 010551           23 ARPSPRYKHAAAVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT  101 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~iyi~GG-~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~  101 (507)
                      +.+.||     ..+++.||++|| .......+++++||+.+++|..++.+                |.+|.+|+++.+++
T Consensus         5 ~~~~pr-----~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~   63 (301)
T 2vpj_A            5 PRTRAR-----LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI----------------TRKRRYVASVSLHD   63 (301)
T ss_dssp             -------------CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETT
T ss_pred             cccccc-----ccCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCC----------------ChhhccccEEEECC
Confidence            345566     236889999999 66677889999999999999998754                45799999999999


Q ss_pred             EEEEEeccCCCCCCcceEEEEECCCCc---EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          102 KLLILGGHYKKSSDSMIVRFIDLETNL---CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +||++||..... ..+++++||+.+++   |+.+.   ++|.+|..|+++.++++||++||.+... ..+++++||+.++
T Consensus        64 ~l~v~GG~~~~~-~~~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~  138 (301)
T 2vpj_A           64 RIYVIGGYDGRS-RLSSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNID  138 (301)
T ss_dssp             EEEEECCBCSSC-BCCCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTT
T ss_pred             EEEEEcCCCCCc-cCceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCC
Confidence            999999987443 47889999999999   99996   8999999999999999999999998543 4889999999999


Q ss_pred             cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEE
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      +|+.+..   +|.+|..|+++++ +++|||+||.+.....+++++||+.+++|+.+   .++|.+|..|+++.++++|||
T Consensus       139 ~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v  211 (301)
T 2vpj_A          139 QWSMLGD---MQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV---TPMATKRSGAGVALLNDHIYV  211 (301)
T ss_dssp             EEEEEEE---CSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEE
T ss_pred             eEEECCC---CCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC---CCCCcccccceEEEECCEEEE
Confidence            9999974   6889999999988 55699999998777889999999999999997   578899999999999999999


Q ss_pred             EeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCC
Q 010551          259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPR  337 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~  337 (507)
                      +||.+.....+++++||+.+++|+.++.+|    .++..+  +++.+++  .|||+||.++. ..+++++||+..+.|..
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p----~~r~~~--~~~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMT----TPRCYV--GATVLRG--RLYAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEEECCCS----SCCBSC--EEEEETT--EEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             EeCCCCCcccceEEEEeCCCCcEEECCCCC----Ccccce--eEEEECC--EEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence            999887766889999999999999997654    334344  4445544  79999998754 46899999999999987


Q ss_pred             CcccCCch
Q 010551          338 PKIFQSPA  345 (507)
Q Consensus       338 ~~~~~~~~  345 (507)
                      ...++.++
T Consensus       284 ~~~~~~~r  291 (301)
T 2vpj_A          284 VTSMGTQR  291 (301)
T ss_dssp             EEEEEEEE
T ss_pred             cCCCCccc
Confidence            76555443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=7.2e-41  Score=325.70  Aligned_cols=262  Identities=17%  Similarity=0.260  Sum_probs=221.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccC-----C
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY-----K  111 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-----~  111 (507)
                      .+.||++||       +++++||+.+++|.. +.+              ..|.+|.+|++++++++||++||..     .
T Consensus         4 ~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~--------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~   61 (315)
T 4asc_A            4 QDLIFMISE-------EGAVAYDPAANECYC-ASL--------------SSQVPKNHVSLVTKENQVFVAGGLFYNEDNK   61 (315)
T ss_dssp             EEEEEEEET-------TEEEEEETTTTEEEE-EEC--------------CCCSCSSEEEEECTTCCEEEEEEEEECSSCS
T ss_pred             ceEEEEEcC-------CceEEECCCCCeEec-CCC--------------CCCCCccceEEEEECCEEEEEcCcccCCCCC
Confidence            467999999       679999999999986 322              2356899999999999999999963     2


Q ss_pred             CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCC--CCCCccCcEEEEECCCCcEEEeccCCCC
Q 010551          112 KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGED--RSRKLLNDVHFLDLETMTWDAVEVTQTP  189 (507)
Q Consensus       112 ~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~--~~~~~~n~~~~~d~~t~~W~~~~~~~~~  189 (507)
                      .....+++++||+.+++|+.++   ++|.+|.+|+++.++++||+|||.+  ......+++++||+.+++|+.+.   ++
T Consensus        62 ~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~  135 (315)
T 4asc_A           62 EDPMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PL  135 (315)
T ss_dssp             SSCEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CC
T ss_pred             ccccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CC
Confidence            2223556999999999999987   8999999999999999999999975  23456899999999999999987   47


Q ss_pred             CCCCCCceEEEEcCCEEEEEcCC-CCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCc
Q 010551          190 PAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC  268 (507)
Q Consensus       190 p~~r~~~~~~~~~~~~l~v~GG~-~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~  268 (507)
                      |.+|.+|+++.+++ +||||||. ......+++++||+.+++|+.+   .++|.+|..|++++++++|||+||.+.....
T Consensus       136 p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  211 (315)
T 4asc_A          136 PYVVYGHTVLSHMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL---APMQTARSLFGATVHDGRIIVAAGVTDTGLT  211 (315)
T ss_dssp             SSCCBSCEEEEETT-EEEEECCBCTTSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEEEEECSSSEE
T ss_pred             CCcccceeEEEECC-EEEEEeCCCCCCcccceEEEEeCCCCeEEEC---CCCCCchhceEEEEECCEEEEEeccCCCCcc
Confidence            88999999998854 59999998 5567789999999999999997   5788999999999999999999998877778


Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC----------CcCceEEEEECCCCCCCCC
Q 010551          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRP  338 (507)
Q Consensus       269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~~~~~~~w~~~  338 (507)
                      +++++||+.+++|+.++++|    .+|.++  +++.+.+  .|||+||.++          ...+++|+||+.++.|...
T Consensus       212 ~~~~~yd~~~~~W~~~~~~p----~~r~~~--~~~~~~~--~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          212 SSAEVYSITDNKWAPFEAFP----QERSSL--SLVSLVG--TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEEETTTTEEEEECCCS----SCCBSC--EEEEETT--EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEECCCCeEEECCCCC----Ccccce--eEEEECC--EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            89999999999999997653    344444  4445544  8999999853          3468999999999999876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=2.1e-40  Score=328.31  Aligned_cols=282  Identities=15%  Similarity=0.146  Sum_probs=219.5

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEcc--CCceeeeccccccCCCccccCCCcCCCCCccceeEEEEC
Q 010551           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG  100 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~  100 (507)
                      ++|.+|.+|++++++++|||+||...    +++++||+.  +++|+.++.++               +.+|.+|++++++
T Consensus         5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p---------------~~~R~~~~~~~~~   65 (357)
T 2uvk_A            5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFP---------------GGPRDQATSAFID   65 (357)
T ss_dssp             CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCT---------------TCCCBSCEEEEET
T ss_pred             CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCC---------------CCcCccceEEEEC
Confidence            78999999999999999999999653    589999998  48999987543               1589999999999


Q ss_pred             CEEEEEeccCC----CCCCcceEEEEECCCCcEEEeecCCCCC-CCCcCcEEEEECCEEEEEcCCCCCC-----------
Q 010551          101 TKLLILGGHYK----KSSDSMIVRFIDLETNLCGVMETSGKVP-VTRGGHSVTLVGSRLIIFGGEDRSR-----------  164 (507)
Q Consensus       101 ~~lyv~GG~~~----~~~~~~~~~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~iy~~GG~~~~~-----------  164 (507)
                      ++|||+||...    .....+++++||+.+++|+.+.   +++ .+|.+|++++++++||+|||.+...           
T Consensus        66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECS---CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECC---CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhc
Confidence            99999999822    2235788999999999999998   444 9999999999999999999986431           


Q ss_pred             ----------------------CccCcEEEEECCCCcEEEeccCCCCCCCCC-CceEEEEcCCEEEEEcCCCCC-CCCCc
Q 010551          165 ----------------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHS-IFFND  220 (507)
Q Consensus       165 ----------------------~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~-~~~~~  220 (507)
                                            ...+++++||+.+++|+.+..   +|.++. +|+++++ +++||||||.+.. ...++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~  218 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE---SPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDA  218 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE---CSSCCCBSCEEEEE-TTEEEEECCEEETTEECCC
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC---CCCCCcccccEEEE-CCEEEEEeeecCCCcccCc
Confidence                                  246899999999999999964   565544 4877777 5569999997543 45789


Q ss_pred             EEEEEC--CCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCC-----------------CCcceEEEEECCCCcE
Q 010551          221 LHVLDL--QTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----------------NGCQETIVLNMTKLAW  281 (507)
Q Consensus       221 i~~~d~--~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----------------~~~~~~~~~d~~~~~W  281 (507)
                      ++.||+  .+++|+.+... +.|.+|..|++++++++|||+||.+..                 ..++++++||+.+++|
T Consensus       219 v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W  297 (357)
T 2uvk_A          219 VFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW  297 (357)
T ss_dssp             EEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C
T ss_pred             eEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce
Confidence            999987  89999997432 334446788899999999999996432                 2246799999999999


Q ss_pred             EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC--cCceEEEEECCCCCCCCCc
Q 010551          282 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRDIPRPK  339 (507)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~~~~~~w~~~~  339 (507)
                      +.++.+|.    +|..+  +++.+.+  .||||||++..  ..++++.|++..+.|....
T Consensus       298 ~~~~~~p~----~r~~~--~~~~~~~--~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          298 DKSGELSQ----GRAYG--VSLPWNN--SLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEEEECSS----CCBSS--EEEEETT--EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eeCCCCCC----Ccccc--eeEEeCC--EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            99977643    44444  3444544  79999998753  4689999999999887543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=6.3e-40  Score=319.49  Aligned_cols=271  Identities=16%  Similarity=0.254  Sum_probs=224.9

Q ss_pred             CCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEE
Q 010551           25 PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLL  104 (507)
Q Consensus        25 p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ly  104 (507)
                      ..+|.++..   .+.||++||.       ++++||+.+++|...+.               ..|.+|.+|+++.++++||
T Consensus         6 ~~~r~~~~~---~~~i~~~GG~-------~~~~yd~~~~~W~~~~~---------------~~~~~r~~~~~~~~~~~ly   60 (318)
T 2woz_A            6 DIPRHGMFV---KDLILLVNDT-------AAVAYDPMENECYLTAL---------------AEQIPRNHSSIVTQQNQVY   60 (318)
T ss_dssp             SSCCCCCSE---EEEEEEECSS-------EEEEEETTTTEEEEEEE---------------CTTSCSSEEEEECSSSCEE
T ss_pred             cccccccee---cchhhhcccc-------ceEEECCCCCceecccC---------------CccCCccceEEEEECCEEE
Confidence            456777654   4689999993       48999999999988332               2256899999999999999


Q ss_pred             EEeccCCC-----CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC-CCCccCcEEEEECCCC
Q 010551          105 ILGGHYKK-----SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM  178 (507)
Q Consensus       105 v~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~-~~~~~n~~~~~d~~t~  178 (507)
                      ++||....     ....+++++||+.+++|+.++   ++|.+|..|+++.++++||++||.+. .....+++++||+.++
T Consensus        61 v~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  137 (318)
T 2woz_A           61 VVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAA  137 (318)
T ss_dssp             EEESSCC-------CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTT
T ss_pred             EECCcccCccccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCC
Confidence            99996321     123456999999999999987   89999999999999999999999863 3456899999999999


Q ss_pred             cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEE
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  257 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  257 (507)
                      +|+.+.   ++|.+|.+|+++++ +++||||||.+ .....+++++||+.+++|+.+   .++|.+|..|++++++++||
T Consensus       138 ~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iy  210 (318)
T 2woz_A          138 KWSEVK---NLPIKVYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL---APMKTPRSMFGVAIHKGKIV  210 (318)
T ss_dssp             EEEEEC---CCSSCEESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEE
T ss_pred             CEeECC---CCCCcccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC---CCCCCCcccceEEEECCEEE
Confidence            999997   47889999999887 55699999984 445688999999999999997   57889999999999999999


Q ss_pred             EEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC----------CcCceEEE
Q 010551          258 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFV  327 (507)
Q Consensus       258 v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~  327 (507)
                      |+||.+.....+++++||+.+++|+.++.+|.    ++..+  +++.+.+  .|||+||.+.          ...+++|+
T Consensus       211 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~----~r~~~--~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~~~~v~~  282 (318)
T 2woz_A          211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ----ERSSI--SLVSLAG--SLYAIGGFAMIQLESKEFAPTEVNDIWK  282 (318)
T ss_dssp             EEEEEETTEEEEEEEEEETTTCCEEECCCCSS----CCBSC--EEEEETT--EEEEECCBCCBC----CCBCCBCCCEEE
T ss_pred             EEcCcCCCCccceEEEEECCCCeEEECCCCCC----cccce--EEEEECC--EEEEECCeeccCCCCceeccceeeeEEE
Confidence            99998776667899999999999999976543    34444  4445544  7999999864          34789999


Q ss_pred             EECCCCCCCCC
Q 010551          328 MRLKPRDIPRP  338 (507)
Q Consensus       328 ~~~~~~~w~~~  338 (507)
                      ||+.++.|...
T Consensus       283 yd~~~~~W~~~  293 (318)
T 2woz_A          283 YEDDKKEWAGM  293 (318)
T ss_dssp             EETTTTEEEEE
T ss_pred             EeCCCCEehhh
Confidence            99999999876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=6e-39  Score=317.80  Aligned_cols=260  Identities=19%  Similarity=0.328  Sum_probs=210.8

Q ss_pred             CCCeEeeCC--CCceEEeecCCCCC-CccccceEEEECCEEEEEcCC-C----CCccCCceEEEEccCCceeeecccccc
Q 010551            3 SGSWHLELP--YDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGS-R----NGRFLSDVQVFDLRSLAWSNLRLETEL   74 (507)
Q Consensus         3 ~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~iyi~GG~-~----~~~~~~~~~~~d~~~~~W~~~~~~~~~   74 (507)
                      .++|+||+.  +++|..++   ++| .+|.+|++++++++|||+||. .    .....+++++||+.+++|+.+++++  
T Consensus        31 ~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--  105 (357)
T 2uvk_A           31 TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--  105 (357)
T ss_dssp             TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--
T ss_pred             CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--
Confidence            478999998  49999998   688 899999999999999999997 2    2456899999999999999988653  


Q ss_pred             CCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCC---------------------------------CCcceEEE
Q 010551           75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---------------------------------SDSMIVRF  121 (507)
Q Consensus        75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~---------------------------------~~~~~~~~  121 (507)
                                   |.+|.+|++++++++||++||.+...                                 ...+++++
T Consensus       106 -------------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  172 (357)
T 2uvk_A          106 -------------PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS  172 (357)
T ss_dssp             -------------SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred             -------------CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence                         56899999999999999999986432                                 13578999


Q ss_pred             EECCCCcEEEeecCCCCCCCC-cCcEEEEECCEEEEEcCCCCCCCccCcEEEEEC--CCCcEEEeccCCCCCCCCCCceE
Q 010551          122 IDLETNLCGVMETSGKVPVTR-GGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPAPRYDHSA  198 (507)
Q Consensus       122 yd~~t~~W~~~~~~g~~p~~r-~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~--~t~~W~~~~~~~~~p~~r~~~~~  198 (507)
                      ||+.+++|+.+.   ++|.++ .+|++++++++||+|||.+......+++++||+  .+++|+.+... +.|.+|.+|++
T Consensus       173 yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~  248 (357)
T 2uvk_A          173 FDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFA  248 (357)
T ss_dssp             EETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEE
T ss_pred             EeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceE
Confidence            999999999997   677665 459999999999999998765556889999987  89999999754 23445667778


Q ss_pred             EEEcCCEEEEEcCCCC-----------------CCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEec
Q 010551          199 ALHANRYLIVFGGCSH-----------------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG  261 (507)
Q Consensus       199 ~~~~~~~l~v~GG~~~-----------------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG  261 (507)
                      ++++ ++||||||.+.                 ...++++++||+.+++|+.+   +++|.+|..|+++.++++||||||
T Consensus       249 ~~~~-~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          249 GISN-DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGRAYGVSLPWNNSLLIIGG  324 (357)
T ss_dssp             EEET-TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE---EECSSCCBSSEEEEETTEEEEEEE
T ss_pred             EEEC-CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC---CCCCCCcccceeEEeCCEEEEEee
Confidence            7774 56999999642                 22346899999999999997   578899999999999999999999


Q ss_pred             cCCCCC-cceEEEEECCCCcEEEeccCC
Q 010551          262 GDNNNG-CQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       262 ~~~~~~-~~~~~~~d~~~~~W~~v~~~~  288 (507)
                      .+.... ++++++|++++++|....+.+
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            876544 689999999999999987654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=1.3e-38  Score=340.43  Aligned_cols=284  Identities=14%  Similarity=0.149  Sum_probs=229.5

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeec-cccccCCCccccCCCcCCCCCccceeEEEE--
Q 010551           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLR-LETELDADKTEDSGLLEVLPPMSDHCMVKW--   99 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--   99 (507)
                      ..|.+|++|+++ +++.||++||... ...+++++||+.+++|..++ +.+.           ...|.+|.+|+++++  
T Consensus       384 ~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~-----------~~~p~~R~~hs~~~~~~  450 (695)
T 2zwa_A          384 CPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSS-----------SEVPVARMCHTFTTISR  450 (695)
T ss_dssp             CTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCC-----------SCCCCCCBSCEEEEETT
T ss_pred             CCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCC-----------CCCCccccceEEEEEcc
Confidence            466677776654 8999999999877 77899999999999999988 4321           245789999999999  


Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +++||++||........+++|+||+.+++|+.+.   ++|.+|.+|+++++ +++||+|||.+...    ++++||+.++
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~  523 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEE  523 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCC
Confidence            9999999999876656789999999999999997   89999999999997 99999999987654    8999999999


Q ss_pred             cEEEeccCCCCCCCCCCceEEEEc-C-CEEEEEcCCCCC--CCCCcEEEEECCCCc------EEecccCCCCCCCCCccE
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHA-N-RYLIVFGGCSHS--IFFNDLHVLDLQTNE------WSQPEIKGDLVTGRAGHA  248 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~-~-~~l~v~GG~~~~--~~~~~i~~~d~~~~~------W~~~~~~~~~p~~r~~~~  248 (507)
                      +|+.+.+.+++|.+|.+|++++++ + ++||||||.+..  ...+++++||+.+++      |+.+..  .++.+|.+|+
T Consensus       524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~  601 (695)
T 2zwa_A          524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQ  601 (695)
T ss_dssp             EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCE
T ss_pred             ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccce
Confidence            999999888889999999987765 2 679999998543  677999999999999      887643  2357899999


Q ss_pred             EEEEC-CeEEEEeccCCCC---CcceEEEEECCCCcEEEeccCCCCC----CCCCCCCceEEEEEcCceEEEEEccCC--
Q 010551          249 GITID-ENWYIVGGGDNNN---GCQETIVLNMTKLAWSILTSVKGRN----PLASEGLSVCSAIIEGEHHLVAFGGYN--  318 (507)
Q Consensus       249 ~~~~~-~~l~v~GG~~~~~---~~~~~~~~d~~~~~W~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~l~v~GG~~--  318 (507)
                      +++++ ++|||+||.+...   ..+++++||+.+++|+.+. ++...    ++.+.+|  +++.+.++ .|||+||..  
T Consensus       602 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh--~~~~~~~g-~i~v~GGg~~c  677 (695)
T 2zwa_A          602 IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGF--SLVSTSMG-TIHIIGGGATC  677 (695)
T ss_dssp             EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSC--EEECC----CEEEECCEEEC
T ss_pred             EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceee--eEEEeCCC-EEEEEeCCccC
Confidence            99999 9999999986553   4789999999999999653 33221    1233333  34444332 688999843  


Q ss_pred             ---CCcCceEEEEECCC
Q 010551          319 ---GKYNNEVFVMRLKP  332 (507)
Q Consensus       319 ---~~~~~~~~~~~~~~  332 (507)
                         +...+++|.+|+..
T Consensus       678 fsfGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          678 YGFGSVTNVGLKLIAIA  694 (695)
T ss_dssp             TTSCEEECCCEEEEECC
T ss_pred             cCccccccceEEEEEEc
Confidence               44567999999754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=1.7e-35  Score=316.34  Aligned_cols=254  Identities=19%  Similarity=0.207  Sum_probs=210.6

Q ss_pred             CCCeEeeCCCCceEEee-c--CCCCCCccccceEEEE--CCEEEEEcCCCCCc-cCCceEEEEccCCceeeeccccccCC
Q 010551            3 SGSWHLELPYDLWVTLP-V--SGARPSPRYKHAAAVF--DQKLYIVGGSRNGR-FLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~-~--~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~~~~~~   76 (507)
                      .++|+||+.+++|..++ .  .+.+|.+|.+|+++++  +++|||+||..... .++++++||+.+++|+.++.+     
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~-----  486 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL-----  486 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC-----
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC-----
Confidence            46899999999999998 3  3568999999999999  99999999977643 789999999999999998754     


Q ss_pred             CccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEEC---C
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVG---S  152 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~  152 (507)
                                 |.+|.+|+++++ +++|||+||.+...    ++++||+.+++|+.+.+.|.+|.+|.+|++++++   +
T Consensus       487 -----------p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~  551 (695)
T 2zwa_A          487 -----------SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK  551 (695)
T ss_dssp             -----------SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred             -----------CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence                       558999999997 99999999987655    7999999999999999877899999999988877   8


Q ss_pred             EEEEEcCCCCCC-CccCcEEEEECCCCc------EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC---CCCcEE
Q 010551          153 RLIIFGGEDRSR-KLLNDVHFLDLETMT------WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLH  222 (507)
Q Consensus       153 ~iy~~GG~~~~~-~~~n~~~~~d~~t~~------W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~i~  222 (507)
                      +||+|||..... ..++++++||+.+++      |+.+..  .++.+|.+|+++++++++|||+||.+...   ..++++
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence            999999986543 568999999999999      888865  23578999999999857799999986543   688999


Q ss_pred             EEECCCCcEEecccCCC----CCCCCCccEEEEECC-eEEEEeccCCC----CCcceEEEEECCC
Q 010551          223 VLDLQTNEWSQPEIKGD----LVTGRAGHAGITIDE-NWYIVGGGDNN----NGCQETIVLNMTK  278 (507)
Q Consensus       223 ~~d~~~~~W~~~~~~~~----~p~~r~~~~~~~~~~-~l~v~GG~~~~----~~~~~~~~~d~~~  278 (507)
                      +||+.+++|+.+.....    .++.+.+|+++.+++ ++||+||....    ...+++|.+|+..
T Consensus       630 ~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          630 SLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAIA  694 (695)
T ss_dssp             EEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred             EEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEEc
Confidence            99999999997532211    123578899888876 99999996432    2256788887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=4.6e-33  Score=297.26  Aligned_cols=323  Identities=11%  Similarity=0.047  Sum_probs=230.9

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCc------cCCceEEEEccCCceeeeccccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGR------FLSDVQVFDLRSLAWSNLRLETELD   75 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~------~~~~~~~~d~~~~~W~~~~~~~~~~   75 (507)
                      ++..|||.+++|..++   ++|  |.+|+++++  +++||++||.....      ..+.+++||+.+++|+.++.++   
T Consensus       167 ~~~~~dp~~~~W~~~~---~~P--~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---  238 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTI---DLP--IVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---  238 (656)
T ss_dssp             CCCCCCTTSCEEEEEE---ECS--SCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---
T ss_pred             ccccCCCCCCeeeeec---cCC--CCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---
Confidence            4677999999999987   444  466777777  99999999976432      2347999999999999987653   


Q ss_pred             CCccccCCCcCCCCCccce--eEE-EECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-C
Q 010551           76 ADKTEDSGLLEVLPPMSDH--CMV-KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-G  151 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~--~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~  151 (507)
                                   .+|..|  +++ ..+++||++||....     ++++||+.+++|+.+.   +||.+|..|+++++ +
T Consensus       239 -------------~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~d  297 (656)
T 1k3i_A          239 -------------TKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSD  297 (656)
T ss_dssp             -------------CSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTT
T ss_pred             -------------CCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecC
Confidence                         234333  344 358999999997643     5999999999999987   89999999999999 9


Q ss_pred             CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC----CCCCcEEEEECC
Q 010551          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQ  227 (507)
Q Consensus       152 ~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~  227 (507)
                      ++||++||........+++++||+.+++|+.+...+..|.++..+.++...++++|+|||.++.    ...++++.||+.
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~  377 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  377 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence            9999999964444468899999999999999864432232322232333345669999998654    346789999999


Q ss_pred             CCcEEecccCCCC----CCCCCccEEEE---ECCeEEEEeccCC---CCCcc---eEEEEECCCCcEEEec--cCCCCCC
Q 010551          228 TNEWSQPEIKGDL----VTGRAGHAGIT---IDENWYIVGGGDN---NNGCQ---ETIVLNMTKLAWSILT--SVKGRNP  292 (507)
Q Consensus       228 ~~~W~~~~~~~~~----p~~r~~~~~~~---~~~~l~v~GG~~~---~~~~~---~~~~~d~~~~~W~~v~--~~~~~~~  292 (507)
                      ++.|..+......    +.++..++++.   ++++|||+||...   ...++   .+++||+.++.|..+.  .+    |
T Consensus       378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m----p  453 (656)
T 1k3i_A          378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL----Y  453 (656)
T ss_dssp             TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC----S
T ss_pred             CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC----C
Confidence            9998865322211    22344455553   4899999999643   22234   6889999999999986  33    2


Q ss_pred             CCCCCCceEEEEEcCceEEEEEccCCC-------CcCceEEEEECCCCCCCCCcccCCchhhhhccc---hhHHHHhhcc
Q 010551          293 LASEGLSVCSAIIEGEHHLVAFGGYNG-------KYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAAS---VTAAYALAKS  362 (507)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~l~v~GG~~~-------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~  362 (507)
                      .+  +..++++++.++ .|||+||.+.       ...+++++||+..+.|.....++.++.......   ...++.++|.
T Consensus       454 ~~--R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          454 FA--RTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SC--CBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CC--cccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            33  344444555333 6899999752       346899999999999988766665554332222   3456666664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=2.5e-32  Score=291.54  Aligned_cols=297  Identities=9%  Similarity=0.058  Sum_probs=218.0

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccce--EEE-ECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHA--AAV-FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~--~~~-~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~   80 (507)
                      .+|+||+.+++|..++   .+|.+|..|+  +++ .+++||++||....    ++++||+.+++|..++.+         
T Consensus       220 ~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~---------  283 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDM---------  283 (656)
T ss_dssp             EEEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCC---------
T ss_pred             EEEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCC---------
Confidence            4799999999999998   5666766553  444 48999999997643    799999999999998755         


Q ss_pred             cCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCC--CCCCCCcCcEEEEECCEEEEE
Q 010551           81 DSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG--KVPVTRGGHSVTLVGSRLIIF  157 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~iy~~  157 (507)
                             |.+|.+|+++++ +++||++||........+++++||+.+++|+.+...+  +++.++.. +++..++++|+|
T Consensus       284 -------~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~  355 (656)
T 1k3i_A          284 -------QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLF  355 (656)
T ss_dssp             -------SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEE
T ss_pred             -------CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEE
Confidence                   457999999999 9999999996444445788999999999999985332  34455443 555678999999


Q ss_pred             cCCCCCC---CccCcEEEEECCCCcEEEeccCCCC----CCCCCCceEEEE--cCCEEEEEcCCCC---CCCCC---cEE
Q 010551          158 GGEDRSR---KLLNDVHFLDLETMTWDAVEVTQTP----PAPRYDHSAALH--ANRYLIVFGGCSH---SIFFN---DLH  222 (507)
Q Consensus       158 GG~~~~~---~~~n~~~~~d~~t~~W~~~~~~~~~----p~~r~~~~~~~~--~~~~l~v~GG~~~---~~~~~---~i~  222 (507)
                      ||.++..   ...++++.||+.++.|.........    +.++..++++++  .+++|||+||...   ....+   .++
T Consensus       356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~  435 (656)
T 1k3i_A          356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT  435 (656)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence            9986431   2367899999999998765432111    223445555543  3678999999642   23444   788


Q ss_pred             EEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCC------CCCcceEEEEECCCCcEEEeccCCCCCCCCC
Q 010551          223 VLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN------NNGCQETIVLNMTKLAWSILTSVKGRNPLAS  295 (507)
Q Consensus       223 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~------~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~  295 (507)
                      +||+.++.|..+. .+++|.+|..|+++++ +++|||+||.+.      ....+++++||+.+++|+.+..++    .+|
T Consensus       436 ~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~----~~R  510 (656)
T 1k3i_A          436 LGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS----IVR  510 (656)
T ss_dssp             CCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS----SCC
T ss_pred             cCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC----Ccc
Confidence            9999999999874 2588999999999888 899999999653      233678999999999999987653    344


Q ss_pred             CCCceEEEEEcCceEEEEEccCC-CC---cCceEEEEECC
Q 010551          296 EGLSVCSAIIEGEHHLVAFGGYN-GK---YNNEVFVMRLK  331 (507)
Q Consensus       296 ~~~~~~~~~~~~~~~l~v~GG~~-~~---~~~~~~~~~~~  331 (507)
                      ..|+.  +++..+..|||+||.. +.   ..-++.+|.+.
T Consensus       511 ~~hs~--a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Pp  548 (656)
T 1k3i_A          511 VYHSI--SLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN  548 (656)
T ss_dssp             CTTEE--EEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred             ccccH--hhcCCCcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence            45543  3442233689999853 22   22345666653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.69  E-value=3.1e-05  Score=74.55  Aligned_cols=273  Identities=8%  Similarity=-0.062  Sum_probs=156.3

Q ss_pred             CCCCeEeeCCCCceEEeecC--CCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCcee-eeccccccCCCc
Q 010551            2 DSGSWHLELPYDLWVTLPVS--GARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS-NLRLETELDADK   78 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~-~~~~~~~~~~~~   78 (507)
                      +.++-+||+.+.++..--..  ...+.....+.++..++++|+....     .+.+.++|+.+++-. .++..       
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~-------   83 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGF-------   83 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECC-------
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCC-------
Confidence            45677889998887642100  0234445556777789999998752     357999999987763 33211       


Q ss_pred             cccCCCcCCCCCccceeEEE-ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC-CcCcEEEEECCEEEE
Q 010551           79 TEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVT-RGGHSVTLVGSRLII  156 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~-r~~~~~~~~~~~iy~  156 (507)
                                  ..-+.++. -++++|+....      ...+.++|+.+++-......|..... ..-..++..++++|+
T Consensus        84 ------------~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv  145 (328)
T 3dsm_A           84 ------------TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYV  145 (328)
T ss_dssp             ------------SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEE
T ss_pred             ------------CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEE
Confidence                        11233444 67899998642      34699999999986543332331100 011233346889998


Q ss_pred             EcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCC-----CCcEEEEECCCCcE
Q 010551          157 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF-----FNDLHVLDLQTNEW  231 (507)
Q Consensus       157 ~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-----~~~i~~~d~~~~~W  231 (507)
                      ..-.     ..+.+.++|+.+++....-..+..|     +.++...++.+|+.........     .+.++++|+.+++.
T Consensus       146 ~~~~-----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v  215 (328)
T 3dsm_A          146 NCWS-----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV  215 (328)
T ss_dssp             EECT-----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred             EcCC-----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence            7421     1357999999998865443222222     3344445677777654321111     36799999999876


Q ss_pred             EecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEc-Cc
Q 010551          232 SQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GE  308 (507)
Q Consensus       232 ~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~-~~  308 (507)
                      ...-   ..|.......++..  ++.+|+..+        .++++|+.+.+.......+.      .+.....+.++ .+
T Consensus       216 ~~~~---~~~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~~~~------~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          216 EKQF---KFKLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPFLEF------RDTKYYGLTVNPNN  278 (328)
T ss_dssp             EEEE---ECCTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCSBCC------CSSCEEEEEECTTT
T ss_pred             EEEE---ecCCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeeeecC------CCCceEEEEEcCCC
Confidence            6421   11212223344444  457777633        68999998876421111111      01222333444 35


Q ss_pred             eEEEEEccCCCCcCceEEEEECC
Q 010551          309 HHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       309 ~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      ..|||....+....+.+++||+.
T Consensus       279 g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          279 GEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT
T ss_pred             CeEEEEcccccccCCEEEEECCC
Confidence            67888763222235789999986

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.38  E-value=0.00018  Score=65.15  Aligned_cols=206  Identities=16%  Similarity=0.018  Sum_probs=131.0

Q ss_pred             CccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCc
Q 010551           90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        90 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~  169 (507)
                      .-+-+++...++.||+-.|..+.    +.+.++|+.|++-..-.   ++|....+..++..+++||+....      .+.
T Consensus        20 ~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~~~   86 (243)
T 3mbr_X           20 TAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------NHE   86 (243)
T ss_dssp             TCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSE
T ss_pred             ccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------CCE
Confidence            34556778889999999887653    45999999999876654   556666777788889999998654      467


Q ss_pred             EEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccCCCCCCCC-Ccc
Q 010551          170 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR-AGH  247 (507)
Q Consensus       170 ~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r-~~~  247 (507)
                      +++||+.+.+-..--     +.+..+.+++ .+++.||+.-|      .+.++.+|+.+.+-.. +.+ +..+.+. .--
T Consensus        87 v~v~D~~tl~~~~ti-----~~~~~Gwglt-~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V-~~~g~~~~~lN  153 (243)
T 3mbr_X           87 GFVYDLATLTPRARF-----RYPGEGWALT-SDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKV-TAGGRPLDNLN  153 (243)
T ss_dssp             EEEEETTTTEEEEEE-----ECSSCCCEEE-ECSSCEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEE
T ss_pred             EEEEECCcCcEEEEE-----eCCCCceEEe-eCCCEEEEECC------CCeEEEEeCCCCeEEEEEEE-ccCCcccccce
Confidence            999999987754332     1223445554 45666888654      3579999999977544 222 2222221 222


Q ss_pred             EEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCC-----CCCCceE-EEEEcCceEEEEEccCCCCc
Q 010551          248 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLA-----SEGLSVC-SAIIEGEHHLVAFGGYNGKY  321 (507)
Q Consensus       248 ~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~-----~~~~~~~-~~~~~~~~~l~v~GG~~~~~  321 (507)
                      -+..+++++|+---     ..+++.++|+.++.-...-++.+..+..     ....... .+..+..+.|||.|-    .
T Consensus       154 eLe~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK----~  224 (243)
T 3mbr_X          154 ELEWVNGELLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK----R  224 (243)
T ss_dssp             EEEEETTEEEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET----T
T ss_pred             eeEEeCCEEEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC----C
Confidence            34556888885531     2458999999998755544443322111     1222333 334445678999875    3


Q ss_pred             CceEEEEEC
Q 010551          322 NNEVFVMRL  330 (507)
Q Consensus       322 ~~~~~~~~~  330 (507)
                      ...+|...+
T Consensus       225 wp~~~~v~~  233 (243)
T 3mbr_X          225 WPMLYEIRL  233 (243)
T ss_dssp             CSEEEEEEE
T ss_pred             CCcEEEEEE
Confidence            566666655

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.29  E-value=0.0029  Score=60.49  Aligned_cols=234  Identities=9%  Similarity=-0.003  Sum_probs=134.6

Q ss_pred             CCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           52 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        52 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      -+.+..||+.+++....-....           ...+.....+.++..++++|+....      .+.+.++|+.|++-..
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~-----------n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~   78 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRA-----------NGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVG   78 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHH-----------HSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhh-----------cCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEE
Confidence            4679999999998765321110           0112334456677789999998753      3469999999998643


Q ss_pred             eecCCCCCCCCcCcEEEE-ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC-CCCCceEEEEcCCEEEEE
Q 010551          132 METSGKVPVTRGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~-~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~  209 (507)
                      .-+.+  ..   -+.++. -++++|+....      .+.+.++|+.+++-...-..+.... ...-+.++. .++++||.
T Consensus        79 ~i~~~--~~---p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~  146 (328)
T 3dsm_A           79 RITGF--TS---PRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVN  146 (328)
T ss_dssp             EEECC--SS---EEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEE
T ss_pred             EcCCC--CC---CcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEE
Confidence            22211  11   123333 57799887643      3579999999987553222222000 002223444 67779887


Q ss_pred             cCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCC-----cceEEEEECCCCcEEE
Q 010551          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNG-----CQETIVLNMTKLAWSI  283 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~-----~~~~~~~d~~~~~W~~  283 (507)
                      .-.    ..+.+.++|+.+++....-..+..|     +.++.. ++++|+.........     .+.++++|+.+.+...
T Consensus       147 ~~~----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~  217 (328)
T 3dsm_A          147 CWS----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK  217 (328)
T ss_dssp             ECT----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred             cCC----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence            421    1357999999998765432122222     223333 467777754321111     2579999999887654


Q ss_pred             eccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCC
Q 010551          284 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       284 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~  336 (507)
                      ...++..      ......++.+.+..||+..+       .++.+|+......
T Consensus       218 ~~~~~~g------~~p~~la~~~d~~~lyv~~~-------~v~~~d~~t~~~~  257 (328)
T 3dsm_A          218 QFKFKLG------DWPSEVQLNGTRDTLYWINN-------DIWRMPVEADRVP  257 (328)
T ss_dssp             EEECCTT------CCCEEEEECTTSCEEEEESS-------SEEEEETTCSSCC
T ss_pred             EEecCCC------CCceeEEEecCCCEEEEEcc-------EEEEEECCCCcee
Confidence            3223211      11233334444568888643       7899999766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.22  E-value=0.00046  Score=62.43  Aligned_cols=163  Identities=18%  Similarity=0.137  Sum_probs=106.3

Q ss_pred             cccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEe
Q 010551           28 RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        28 r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~G  107 (507)
                      -+-+.+...++.||+-.|..+   .+.+..+|+.+++=......                +..-.+.+++..+++||+..
T Consensus        21 ~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l----------------~~~~fgeGi~~~~~~ly~lt   81 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEV----------------PPPYFGAGIVAWRDRLIQLT   81 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEE
T ss_pred             cccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeC----------------CCCcceeEEEEeCCEEEEEE
Confidence            344467777999999998543   35799999999876554332                22346678888999999985


Q ss_pred             ccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEE-EeccC
Q 010551          108 GHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVT  186 (507)
Q Consensus       108 G~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~-~~~~~  186 (507)
                      ..      .+.+++||+.|.+-..--+     .+..+.+++.-+++||+.-|       .+.++.+|+.+.+-. .+...
T Consensus        82 w~------~~~v~v~D~~tl~~~~ti~-----~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~  143 (243)
T 3mbr_X           82 WR------NHEGFVYDLATLTPRARFR-----YPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVT  143 (243)
T ss_dssp             SS------SSEEEEEETTTTEEEEEEE-----CSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECE
T ss_pred             ee------CCEEEEEECCcCcEEEEEe-----CCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEc
Confidence            43      4569999999987544322     22356677766778888655       346999999998743 33332


Q ss_pred             CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          187 QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       187 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                       ..+.+...-......++.+|+--     ...++|.+.|+.+++-..
T Consensus       144 -~~g~~~~~lNeLe~~~G~lyanv-----w~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          144 -AGGRPLDNLNELEWVNGELLANV-----WLTSRIARIDPASGKVVA  184 (243)
T ss_dssp             -ETTEECCCEEEEEEETTEEEEEE-----TTTTEEEEECTTTCBEEE
T ss_pred             -cCCcccccceeeEEeCCEEEEEE-----CCCCeEEEEECCCCCEEE
Confidence             22222222222222366677632     235789999999987543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.08  E-value=0.0008  Score=61.41  Aligned_cols=203  Identities=11%  Similarity=-0.002  Sum_probs=124.1

Q ss_pred             ceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEE
Q 010551           93 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        93 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      ..++...++.||+-.|..+    .+.+.++|+.|++-..-.   +++....+..++..+++||+....      .+.+++
T Consensus        45 tqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v  111 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK------NGLGFV  111 (262)
T ss_dssp             EEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEEE
T ss_pred             cceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee------CCEEEE
Confidence            3556666899999988654    345999999999866544   455555666778889999998653      357999


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccCCCCCCCCCc-cEEE
Q 010551          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG-HAGI  250 (507)
Q Consensus       173 ~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~-~~~~  250 (507)
                      ||+.+.+-..--.     .+-.+.+++ .+++.+|+.-|      .+.++.+|+.+.+-.. +.+ +....+... --+.
T Consensus       112 ~D~~t~~~~~ti~-----~~~eG~glt-~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V-~~~g~~~~~lNELe  178 (262)
T 3nol_A          112 WNIRNLRQVRSFN-----YDGEGWGLT-HNDQYLIMSDG------TPVLRFLDPESLTPVRTITV-TAHGEELPELNELE  178 (262)
T ss_dssp             EETTTCCEEEEEE-----CSSCCCCEE-ECSSCEEECCS------SSEEEEECTTTCSEEEEEEC-EETTEECCCEEEEE
T ss_pred             EECccCcEEEEEE-----CCCCceEEe-cCCCEEEEECC------CCeEEEEcCCCCeEEEEEEe-ccCCccccccceeE
Confidence            9999877543221     122444444 45666888544      3579999999877544 222 111111111 1244


Q ss_pred             EECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCC----CCCCCce-EEEEEcCceEEEEEccCCCCcCceE
Q 010551          251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL----ASEGLSV-CSAIIEGEHHLVAFGGYNGKYNNEV  325 (507)
Q Consensus       251 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~----~~~~~~~-~~~~~~~~~~l~v~GG~~~~~~~~~  325 (507)
                      ..++++|+---     ..+++.++|+.+..-...-++++..+.    ....... ..+..+..+.|||.|-.    ...+
T Consensus       179 ~~~G~lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~----Wp~~  249 (262)
T 3nol_A          179 WVDGEIFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL----WPKV  249 (262)
T ss_dssp             EETTEEEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT----CSEE
T ss_pred             EECCEEEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC----CCce
Confidence            55888886421     245799999999876554444432211    1112223 33444556789998753    4556


Q ss_pred             EEEEC
Q 010551          326 FVMRL  330 (507)
Q Consensus       326 ~~~~~  330 (507)
                      |...+
T Consensus       250 ~ev~~  254 (262)
T 3nol_A          250 FEITL  254 (262)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.01  E-value=0.0092  Score=59.42  Aligned_cols=199  Identities=16%  Similarity=0.196  Sum_probs=109.4

Q ss_pred             EEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEEC
Q 010551           96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus        96 ~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~  175 (507)
                      ++..++..++.|+.+.      .+.+||+.++.-....     ........++.+++..++.|+.++      .+.+||+
T Consensus       244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~  306 (445)
T 2ovr_B          244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDV  306 (445)
T ss_dssp             EEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEET
T ss_pred             EEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEEC
Confidence            3444677777776532      3888998877533222     111122334445777777777653      5899999


Q ss_pred             CCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551          176 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  255 (507)
Q Consensus       176 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  255 (507)
                      .+.+-...-.     ...........+++ +++.|+.+     +.+.+||+.++.-...- .+.. .....-..+..++.
T Consensus       307 ~~~~~~~~~~-----~~~~~v~~~~~~~~-~l~~~~~d-----g~i~vwd~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~  373 (445)
T 2ovr_B          307 ETGNCIHTLT-----GHQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL-QGPN-KHQSAVTCLQFNKN  373 (445)
T ss_dssp             TTCCEEEEEC-----CCCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-CSTT-SCSSCEEEEEECSS
T ss_pred             CCCCEEEEEc-----CCcccEEEEEEeCC-EEEEEeCC-----CeEEEEECCCCcEEEEE-ccCC-CCCCCEEEEEECCC
Confidence            8876433211     11112233344555 56666644     36889999876643321 1111 11222233445677


Q ss_pred             EEEEeccCCCCCcceEEEEECCCCcEEE-eccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          256 WYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       256 l~v~GG~~~~~~~~~~~~~d~~~~~W~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +++.|+.++     .+.+||+.+..... +......   .. ......+...++..++++|+.++.....++++|+...
T Consensus       374 ~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~---~~-~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          374 FVITSSDDG-----TVKLWDLKTGEFIRNLVTLESG---GS-GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEETTS-----EEEEEETTTCCEEEEEEECTTG---GG-TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEeCCC-----eEEEEECCCCceeeeeeccccC---CC-CceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            777777443     57899988876443 2111100   00 1122334455566778889888776778888888643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.97  E-value=0.0011  Score=60.58  Aligned_cols=159  Identities=14%  Similarity=0.030  Sum_probs=101.0

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccC
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY  110 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~  110 (507)
                      ..+...++.||+-.|..+   .+.+.++|+.+++=......                ++.-++.+++..+++||+.... 
T Consensus        46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l----------------~~~~FgeGit~~g~~ly~ltw~-  105 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIEL----------------GKRYFGEGISDWKDKIVGLTWK-  105 (262)
T ss_dssp             EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEESS-
T ss_pred             ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEec----------------CCccceeEEEEeCCEEEEEEee-
Confidence            455555889999988443   25789999999875443322                2234567788899999999542 


Q ss_pred             CCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEE-EeccCCCC
Q 010551          111 KKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTP  189 (507)
Q Consensus       111 ~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~-~~~~~~~~  189 (507)
                           .+.+++||+.|.+-..--+     .+-.+..++.-++.||+.-|       .+.++.+|+.+.+-. .+... ..
T Consensus       106 -----~~~v~v~D~~t~~~~~ti~-----~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~-~~  167 (262)
T 3nol_A          106 -----NGLGFVWNIRNLRQVRSFN-----YDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVT-AH  167 (262)
T ss_dssp             -----SSEEEEEETTTCCEEEEEE-----CSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECE-ET
T ss_pred             -----CCEEEEEECccCcEEEEEE-----CCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEec-cC
Confidence                 4569999999987543321     12255666666678888654       356999999987643 33331 11


Q ss_pred             CCCCCCc-eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          190 PAPRYDH-SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       190 p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ..+...- -+... ++.||+--     ...++|.+.|+.+++-..
T Consensus       168 g~~~~~lNELe~~-~G~lyan~-----w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          168 GEELPELNELEWV-DGEIFANV-----WQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEE-----TTSSEEEEECTTTCBEEE
T ss_pred             CccccccceeEEE-CCEEEEEE-----ccCCeEEEEECCCCcEEE
Confidence            1111111 13334 56688622     235789999999987544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.97  E-value=0.00098  Score=66.12  Aligned_cols=270  Identities=10%  Similarity=-0.062  Sum_probs=136.0

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+|.+|+....+..+..   .+.+...++++.. ++.+++.++.+     ..+.++|+.++...........        
T Consensus       102 ~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~--------  165 (433)
T 3bws_A          102 KLIALDKEGITHRFISR---FKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKY--------  165 (433)
T ss_dssp             CEEECCBTTCSEEEEEE---EECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHH--------
T ss_pred             EEEEECCCCCcceEEEE---EcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccc--------
Confidence            67888887776665542   2222222223322 67888877643     3599999998876543322100        


Q ss_pred             CCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEc
Q 010551           83 GLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~G  158 (507)
                           .........+.+  ++.+|+.|+.+      ..+.+||+.+++......    .....-.+++..  +..+|+.+
T Consensus       166 -----~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          166 -----KKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             -----HTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEE
T ss_pred             -----cccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEe
Confidence                 001111222333  67888887643      359999998876543321    011111222332  34676666


Q ss_pred             CCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC---CCCcEEEEECCCCcEEecc
Q 010551          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       159 G~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~  235 (507)
                      +.+      +.+.+||+.+.+....-..     .....+++...++..+++++.....   .-..+++||+.+++.....
T Consensus       231 ~~~------~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~  299 (433)
T 3bws_A          231 WIS------EDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI  299 (433)
T ss_dssp             TTT------TEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred             cCC------CcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence            543      3699999988876443221     1112233333344344444432221   1246999999887654431


Q ss_pred             cCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEE
Q 010551          236 IKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA  313 (507)
Q Consensus       236 ~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v  313 (507)
                      .     .+.....++..  ++.+|+.++.+     ..+.+||+.+..-.......        ......+..+.+..|++
T Consensus       300 ~-----~~~~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~--------~~~~~~~~s~dg~~l~~  361 (433)
T 3bws_A          300 G-----PPGNKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKSIPVF--------DKPNTIALSPDGKYLYV  361 (433)
T ss_dssp             E-----EEECEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEEEECS--------SSEEEEEECTTSSEEEE
T ss_pred             c-----CCCCcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEEecCC--------CCCCeEEEcCCCCEEEE
Confidence            1     01111122222  23577776533     36889999876543322111        11122333344445665


Q ss_pred             EccCCC----------CcCceEEEEECCCC
Q 010551          314 FGGYNG----------KYNNEVFVMRLKPR  333 (507)
Q Consensus       314 ~GG~~~----------~~~~~~~~~~~~~~  333 (507)
                      .+...+          .....++++|+...
T Consensus       362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             EECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             EecCCCccccccccccccceEEEEEECCCC
Confidence            443221          11347899998654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.90  E-value=0.0077  Score=55.39  Aligned_cols=206  Identities=13%  Similarity=-0.025  Sum_probs=122.2

Q ss_pred             eeEEEEC-CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEE
Q 010551           94 HCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        94 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      ++++..+ +.||+..|...    .+.+.++|+.|++=..-.   +++....+..++..+++||+..-.      .+.+++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL------KNIGFI   90 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT------CSEEEE
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec------CCEEEE
Confidence            6666665 79999877532    346999999999865543   233334445667778899998653      457999


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccCCCCCCCC-CccEEE
Q 010551          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR-AGHAGI  250 (507)
Q Consensus       173 ~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r-~~~~~~  250 (507)
                      ||+.+.+=..--+.+ .|   .+.+ ...+++.+|+.-|      .+.++.+|+.+.+-.. +.. +..+.+. ....+.
T Consensus        91 iD~~t~~v~~~i~~g-~~---~g~g-lt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele  158 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQ-MK---DGWG-LATDGKILYGSDG------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELE  158 (266)
T ss_dssp             EETTTTEEEEEEECC-SS---SCCE-EEECSSSEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEE
T ss_pred             EECCCCcEEEEEECC-CC---CeEE-EEECCCEEEEECC------CCeEEEEECCCCcEEEEEEE-CCCCcccccceeEE
Confidence            999987543322112 12   2333 3345667888654      3689999999876543 222 2222221 122344


Q ss_pred             EECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCC------CCCCCCCceEEEEEcCceEEEEEccCCCCcCce
Q 010551          251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN------PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE  324 (507)
Q Consensus       251 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  324 (507)
                      ..++.+|+--.     ..+++.++|+.+++-...-++++..      ..+........+..++.+.+||.|+.    .+.
T Consensus       159 ~~dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~----~~~  229 (266)
T 2iwa_A          159 YINGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL----WPK  229 (266)
T ss_dssp             EETTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT----CSE
T ss_pred             EECCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC----CCe
Confidence            45778886632     2357999999998654333332110      00111122334445556789998874    467


Q ss_pred             EEEEECCCC
Q 010551          325 VFVMRLKPR  333 (507)
Q Consensus       325 ~~~~~~~~~  333 (507)
                      ++..++...
T Consensus       230 v~~i~l~~~  238 (266)
T 2iwa_A          230 LFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            788777544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.89  E-value=0.021  Score=55.39  Aligned_cols=213  Identities=12%  Similarity=0.082  Sum_probs=119.7

Q ss_pred             CCCCeEeeCCCC--ceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCC
Q 010551            2 DSGSWHLELPYD--LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDAD   77 (507)
Q Consensus         2 ~~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~   77 (507)
                      |..+++||+.+.  .|..-...      ....+.++.++.||+..+      ...++.||+.+++  |+......     
T Consensus       112 ~g~l~a~d~~tG~~~W~~~~~~------~~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~-----  174 (376)
T 3q7m_A          112 KAQVYALNTSDGTVAWQTKVAG------EALSRPVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMP-----  174 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECSS------CCCSCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC------
T ss_pred             CCEEEEEECCCCCEEEEEeCCC------ceEcCCEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCC-----
Confidence            345788998766  57654321      112233455888887543      2369999998875  76543211     


Q ss_pred             ccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCC--------cCcEE
Q 010551           78 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTR--------GGHSV  147 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r--------~~~~~  147 (507)
                               ....+...+.+..++.||+ |..      ...++.||+.+++  |+...   ..|...        .....
T Consensus       175 ---------~~~~~~~~~~~~~~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~p  235 (376)
T 3q7m_A          175 ---------SLSLRGESAPTTAFGAAVV-GGD------NGRVSAVLMEQGQMIWQQRI---SQATGSTEIDRLSDVDTTP  235 (376)
T ss_dssp             -------------CCCCCCEEETTEEEE-CCT------TTEEEEEETTTCCEEEEEEC---CC-----------CCCCCC
T ss_pred             ---------ceeecCCCCcEEECCEEEE-EcC------CCEEEEEECCCCcEEEEEec---ccCCCCcccccccccCCCc
Confidence                     0111222344555777776 321      2359999998875  76543   112111        12233


Q ss_pred             EEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEE
Q 010551          148 TLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD  225 (507)
Q Consensus       148 ~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d  225 (507)
                      +..++.+|+.+.       ...++.||+.+++  |.....         ......+.++.+|+....      ..++.||
T Consensus       236 ~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~~---------~~~~~~~~~~~l~~~~~~------g~l~~~d  293 (376)
T 3q7m_A          236 VVVNGVVFALAY-------NGNLTALDLRSGQIMWKRELG---------SVNDFIVDGNRIYLVDQN------DRVMALT  293 (376)
T ss_dssp             EEETTEEEEECT-------TSCEEEEETTTCCEEEEECCC---------CEEEEEEETTEEEEEETT------CCEEEEE
T ss_pred             EEECCEEEEEec-------CcEEEEEECCCCcEEeeccCC---------CCCCceEECCEEEEEcCC------CeEEEEE
Confidence            455778877542       2358999998774  764321         122334457768876432      3699999


Q ss_pred             CCCCc--EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCc--EEE
Q 010551          226 LQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA--WSI  283 (507)
Q Consensus       226 ~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~--W~~  283 (507)
                      +.+++  |....    . ..+...+.++.++.+|+...      ...++.||+.+..  |+.
T Consensus       294 ~~tG~~~w~~~~----~-~~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          294 IDGGVTLWTQSD----L-LHRLLTSPVLYNGNLVVGDS------EGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TTTCCEEEEECT----T-TTSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEE
T ss_pred             CCCCcEEEeecc----c-CCCcccCCEEECCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence            98876  76531    1 11223344556778777532      1258899988875  543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.87  E-value=0.0015  Score=59.69  Aligned_cols=156  Identities=11%  Similarity=0.028  Sum_probs=100.7

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccC
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY  110 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~  110 (507)
                      ..+...++.||+..|..+.     +.++|+.+++=.... ..                ..-++.+++..+++||+.... 
T Consensus        58 qGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l~----------------~~~FgeGit~~g~~Ly~ltw~-  114 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME-RL----------------GNIFAEGLASDGERLYQLTWT-  114 (268)
T ss_dssp             EEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE-EC----------------TTCCEEEEEECSSCEEEEESS-
T ss_pred             ceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-CC----------------CCcceeEEEEeCCEEEEEEcc-
Confidence            4556668999999985432     889999988654332 21                234566788889999998542 


Q ss_pred             CCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEE-eccCCCC
Q 010551          111 KKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-VEVTQTP  189 (507)
Q Consensus       111 ~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~-~~~~~~~  189 (507)
                           .+.+++||+.|.+-..--+     .+-.+.+++.-+..||+.-|       .+.++.+|+.+.+-.. +... ..
T Consensus       115 -----~~~v~V~D~~Tl~~~~ti~-----~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~-~~  176 (268)
T 3nok_A          115 -----EGLLFTWSGMPPQRERTTR-----YSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVK-LR  176 (268)
T ss_dssp             -----SCEEEEEETTTTEEEEEEE-----CSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECE-ET
T ss_pred             -----CCEEEEEECCcCcEEEEEe-----CCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeC-CC
Confidence                 4469999999987554321     12345677777889999765       3479999999976443 3322 22


Q ss_pred             CCCCCCce-EEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          190 PAPRYDHS-AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       190 p~~r~~~~-~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +.+...-. +... ++.||+-     ....++|.+.|+.+++-..
T Consensus       177 g~~v~~lNeLe~~-dG~lyan-----vw~s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYAN-----IWHSSDVLEIDPATGTVVG  215 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEE-----ETTCSEEEEECTTTCBEEE
T ss_pred             CcccccccccEEe-CCEEEEE-----ECCCCeEEEEeCCCCcEEE
Confidence            22221111 2333 5667762     2235689999999987543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.85  E-value=0.0055  Score=56.40  Aligned_cols=202  Identities=10%  Similarity=-0.085  Sum_probs=117.8

Q ss_pred             cceEEEEC-CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEec
Q 010551           30 KHAAAVFD-QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        30 ~~~~~~~~-~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG  108 (507)
                      -|.+++.+ +.||+..|..   ..+.+.++|+.+++=...-..+                ....+.+++..+++||+..-
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~----------------~~~fgeGi~~~g~~lyv~t~   83 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMD----------------DSYFGEGLTLLNEKLYQVVW   83 (266)
T ss_dssp             EEEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEEETTEEEEEET
T ss_pred             cccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecC----------------CCcceEEEEEeCCEEEEEEe
Confidence            46666665 8999987732   1367999999998754432221                12345677888999999854


Q ss_pred             cCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCC
Q 010551          109 HYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  188 (507)
Q Consensus       109 ~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~  188 (507)
                      .      .+.+++||+.|.+=..--+.| +|   .+..++.-++++|+.-|       .+.++.+|+.+.+-..--..+.
T Consensus        84 ~------~~~v~viD~~t~~v~~~i~~g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~  146 (266)
T 2iwa_A           84 L------KNIGFIYDRRTLSNIKNFTHQ-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKY  146 (266)
T ss_dssp             T------CSEEEEEETTTTEEEEEEECC-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEE
T ss_pred             c------CCEEEEEECCCCcEEEEEECC-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECC
Confidence            2      456999999988644332222 22   33445555668888654       4579999999977433322222


Q ss_pred             CCCCCCC-ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccCCC--------CCCCCCccEEEEE--CCeE
Q 010551          189 PPAPRYD-HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGD--------LVTGRAGHAGITI--DENW  256 (507)
Q Consensus       189 ~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~--------~p~~r~~~~~~~~--~~~l  256 (507)
                      .+.+... ..+... ++.+|+--.     ..+.+.+.|+.+++-.. +...+.        .+..-.-.+++..  ++++
T Consensus       147 ~~~p~~~~nele~~-dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          147 NGHRVIRLNELEYI-NGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             CCcccccceeEEEE-CCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence            1222211 233334 667886432     24689999999987443 111110        1111122344444  4589


Q ss_pred             EEEeccCCCCCcceEEEEECCC
Q 010551          257 YIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                      ||.|+..     +.+++.++..
T Consensus       221 fVTgk~~-----~~v~~i~l~~  237 (266)
T 2iwa_A          221 FVTGKLW-----PKLFEIKLHL  237 (266)
T ss_dssp             EEEETTC-----SEEEEEEEEE
T ss_pred             EEECCCC-----CeEEEEEEec
Confidence            9988743     3567766543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.79  E-value=0.02  Score=54.52  Aligned_cols=229  Identities=12%  Similarity=0.041  Sum_probs=115.9

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      .++++|+.+.+-...-..+     ...+.+++.  ++.+|+.++.+     +.+.+||+.++.-...-..... ..    
T Consensus        70 ~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-~~----  134 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHND-----LKPFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDR-KR----  134 (353)
T ss_dssp             EEEEECTTTCCEEEEEEES-----SCCCSEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCC-CC----
T ss_pred             cEEEEcCCCCeEEEEEecC-----CCcceEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCC-cc----
Confidence            4788888887655443211     112334433  45688776532     4799999988765332222110 00    


Q ss_pred             CCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeec-CCCCCCCCcCcEEEEE--CCEEEE
Q 010551           82 SGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET-SGKVPVTRGGHSVTLV--GSRLII  156 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-~g~~p~~r~~~~~~~~--~~~iy~  156 (507)
                         .....+..-++++..  ++.+|+.+...     ...+++||+.+++-....+ .+..     -+.++..  ++.+|+
T Consensus       135 ---~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~  201 (353)
T 3vgz_A          135 ---TEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKM-----STGLALDSEGKRLYT  201 (353)
T ss_dssp             ---CSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTT-----CCCCEEETTTTEEEE
T ss_pred             ---ccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCc-----cceEEECCCCCEEEE
Confidence               000001111223332  45677766322     2359999999887544332 1111     1222222  346666


Q ss_pred             EcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecc
Q 010551          157 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       157 ~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      ...       .+.+++||+.+.+-......+.........+++.. +++.+|+.+..     .+.+++||+.+++.....
T Consensus       202 ~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~  269 (353)
T 3vgz_A          202 TNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKV  269 (353)
T ss_dssp             ECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEE
T ss_pred             EcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEE
Confidence            543       24688999988764433222111111111223333 35557665432     257999999888765432


Q ss_pred             cCCCCCCCCCccEEEEE-C-CeEEEEeccCCCCCcceEEEEECCCCcEEE
Q 010551          236 IKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       236 ~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~  283 (507)
                      ..   +.+   ..++.. + +.+|+.+..+     ..+.++|+.+.....
T Consensus       270 ~~---~~~---~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          270 AA---PES---LAVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVK  308 (353)
T ss_dssp             EC---SSC---CCEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             Ec---CCC---ceEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEE
Confidence            11   122   123333 3 4577765422     368899998876544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.69  E-value=0.0056  Score=59.61  Aligned_cols=257  Identities=13%  Similarity=0.051  Sum_probs=133.3

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~   79 (507)
                      |..++++|+.+.+-...-..   .  ..-++++..  +..||+.|+.+     ..+.++|+.++.........       
T Consensus        11 d~~v~v~d~~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~-------   73 (391)
T 1l0q_A           11 SDNISVIDVTSNKVTATIPV---G--SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAG-------   73 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEEC---S--SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECS-------
T ss_pred             CCEEEEEECCCCeEEEEeec---C--CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECC-------
Confidence            45678889888765544321   1  112333333  44677777532     46999999887654433221       


Q ss_pred             ccCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEE
Q 010551           80 EDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRL  154 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~i  154 (507)
                                 . ....+.+   ++.||+.|..      ...+.+||+.+++-......+     ..-.+++..  +..+
T Consensus        74 -----------~-~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l  130 (391)
T 1l0q_A           74 -----------S-SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG-----KSPLGLALSPDGKKL  130 (391)
T ss_dssp             -----------S-SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEE
T ss_pred             -----------C-CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCC-----CCcceEEECCCCCEE
Confidence                       1 1222233   4456666542      235999999998765443211     111222222  2367


Q ss_pred             EEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          155 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       155 y~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      |+.++.+      +.+++||+.+.+....-..+..     ...++... ++.+|+.++.+     +.+++||+.++....
T Consensus       131 ~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          131 YVTNNGD------KTVSVINTVTKAVINTVSVGRS-----PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVID  194 (391)
T ss_dssp             EEEETTT------TEEEEEETTTTEEEEEEECCSS-----EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEeCCC------CEEEEEECCCCcEEEEEecCCC-----cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEE
Confidence            6776543      4699999998876555332211     12333333 45566665543     469999998876554


Q ss_pred             cccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEE
Q 010551          234 PEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV  312 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (507)
                      ....     .....+++.. ++..+++++...  ....+.+||+.+..-...  ++..      ....+....+.+..|+
T Consensus       195 ~~~~-----~~~~~~~~~~~~g~~l~~~~~~~--~~~~v~~~d~~~~~~~~~--~~~~------~~~~~~~~s~dg~~l~  259 (391)
T 1l0q_A          195 TVKV-----EAAPSGIAVNPEGTKAYVTNVDK--YFNTVSMIDTGTNKITAR--IPVG------PDPAGIAVTPDGKKVY  259 (391)
T ss_dssp             EEEC-----SSEEEEEEECTTSSEEEEEEECS--SCCEEEEEETTTTEEEEE--EECC------SSEEEEEECTTSSEEE
T ss_pred             EEec-----CCCccceEECCCCCEEEEEecCc--CCCcEEEEECCCCeEEEE--EecC------CCccEEEEccCCCEEE
Confidence            3211     1111222222 344444443211  124688999987753322  2111      1112233334455677


Q ss_pred             EEccCCCCcCceEEEEECCCC
Q 010551          313 AFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       313 v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +.++.+    +.+.++|+...
T Consensus       260 ~s~~~d----~~v~v~d~~~~  276 (391)
T 1l0q_A          260 VALSFX----NTVSVIDTATN  276 (391)
T ss_dssp             EEETTT----TEEEEEETTTT
T ss_pred             EEcCCC----CEEEEEECCCC
Confidence            766543    45777776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.62  E-value=0.029  Score=59.51  Aligned_cols=196  Identities=11%  Similarity=-0.047  Sum_probs=96.1

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC-cEEEeccCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~~~~~~~p~~  192 (507)
                      ...++++|+.++.-..+..   ..........+.+  +++.++++..+... ....++.+|+.++ ....+.........
T Consensus       234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeE
Confidence            4679999999987655431   1111112223333  44444444433221 2457999999998 66665421110000


Q ss_pred             CCCceEEEEc--CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCc
Q 010551          193 RYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGC  268 (507)
Q Consensus       193 r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~  268 (507)
                      .....++...  ++.+++.+..++   ...+|.+|........+.. +.    ........+  +++.+++.+.......
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-~~----~~v~~~~~~spdg~~l~~~~~~~~~~~  381 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-GE----WEVTNFAGFDPKGTRLYFESTEASPLE  381 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-SS----SCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred             CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-CC----eEEEeeeEEcCCCCEEEEEecCCCCce
Confidence            0012233344  565655554432   3578888877766666521 11    111121233  3344444333322234


Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      ..+|.+|+.+.....+...         .........+++.. +++...+......++++|+...
T Consensus       382 ~~l~~~d~~~~~~~~l~~~---------~~~~~~~~spdg~~-l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          382 RHFYCIDIKGGKTKDLTPE---------SGMHRTQLSPDGSA-IIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             BEEEEEETTCCCCEESCCS---------SSEEEEEECTTSSE-EEEEEECSSCSCEEEEEESSSC
T ss_pred             EEEEEEEcCCCCceeccCC---------CceEEEEECCCCCE-EEEEecCCCCCcEEEEEECCCC
Confidence            5789999988776665421         11122222333333 4444433344567888887654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=0.0076  Score=65.08  Aligned_cols=268  Identities=10%  Similarity=-0.001  Sum_probs=138.9

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~   80 (507)
                      +.|+++||+....+.........+... -++++.. ++.|+| |..     ...++.||+.++.++......        
T Consensus       382 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~d~~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~~--------  446 (781)
T 3v9f_A          382 GGGINVFENGKRVAIYNKENRELLSNS-VLCSLKDSEGNLWF-GTY-----LGNISYYNTRLKKFQIIELEK--------  446 (781)
T ss_dssp             SSCEEEEETTEEEEECC-----CCCSB-EEEEEECTTSCEEE-EET-----TEEEEEECSSSCEEEECCSTT--------
T ss_pred             CCcEEEEECCCCeEEEccCCCCCCCcc-eEEEEECCCCCEEE-Eec-----cCCEEEEcCCCCcEEEeccCC--------
Confidence            357888888877776553211111111 1222222 566776 321     135899999998887765311        


Q ss_pred             cCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEE
Q 010551           81 DSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~  157 (507)
                             .....-.+++.. ++.|++...        .-+++||+.+++|.........+.......+...  ++.|++-
T Consensus       447 -------~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          447 -------NELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             -------TCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred             -------CCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence                   111112233333 466666421        2399999999998877532111111111222223  3566653


Q ss_pred             cCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcE-EEEECCCCcEEeccc
Q 010551          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL-HVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i-~~~d~~~~~W~~~~~  236 (507)
                       ..+      +-+++||+.+.++........+|.. ...+++.-.++.|++...       +-+ ++||+.++++.....
T Consensus       512 -t~~------~Gl~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~  576 (781)
T 3v9f_A          512 -TFG------GGVGIYTPDMQLVRKFNQYEGFCSN-TINQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQR  576 (781)
T ss_dssp             -ESS------SCEEEECTTCCEEEEECTTTTCSCS-CEEEEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECG
T ss_pred             -EcC------CCEEEEeCCCCeEEEccCCCCCCCC-eeEEEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccc
Confidence             221      2389999999999887643223211 112222223455666322       246 889998888877543


Q ss_pred             CCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEc
Q 010551          237 KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG  315 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~G  315 (507)
                      ...+|.... .+++.. +++|++.+.       +.+..||+.+..+.......+..   ...+...++....+..|+ ||
T Consensus       577 ~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dGl~---~~~f~~~~~~~~~~G~l~-~g  644 (781)
T 3v9f_A          577 KEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNNIP---QGSFISGCVTKDHNGLIY-FG  644 (781)
T ss_dssp             GGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGTCC---SSCEEEEEEEECTTSCEE-EE
T ss_pred             cCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCCcc---ccccccCceEECCCCEEE-EE
Confidence            333343322 344433 456776531       24789999999888765433321   112222233444344444 47


Q ss_pred             cCCCCcCceEEEEECC
Q 010551          316 GYNGKYNNEVFVMRLK  331 (507)
Q Consensus       316 G~~~~~~~~~~~~~~~  331 (507)
                      |.+     -+..|++.
T Consensus       645 ~~~-----Gl~~f~p~  655 (781)
T 3v9f_A          645 SIN-----GLCFFNPD  655 (781)
T ss_dssp             ETT-----EEEEECSC
T ss_pred             CCC-----ceEEEChh
Confidence            743     35666664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.58  E-value=0.051  Score=50.87  Aligned_cols=190  Identities=15%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.-...-...                  ......+.+  ++.+++.|+.+.   
T Consensus        76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~s~~~d~---  129 (312)
T 4ery_A           76 DSNLLVSASDD-----KTLKIWDVSSGKCLKTLKGH------------------SNYVFCCNFNPQSNLIVSGSFDE---  129 (312)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTCCEEEEEECC------------------SSCEEEEEECSSSSEEEEEETTS---
T ss_pred             CCCEEEEECCC-----CEEEEEECCCCcEEEEEcCC------------------CCCEEEEEEcCCCCEEEEEeCCC---
Confidence            45666666643     35888998876532211110                  111112222  455666666543   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                         .+.+||+.+++-...-     +.......++.+  ++.+++.|+.++      .+.+||+.+.+....-....   .
T Consensus       130 ---~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~~~---~  192 (312)
T 4ery_A          130 ---SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLIDDD---N  192 (312)
T ss_dssp             ---CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCSS---C
T ss_pred             ---cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEeccC---C
Confidence               3889999887643322     111112233333  456677777653      58999998876543321111   0


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE-ECCeEEEEeccCCCCCcceE
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~  271 (507)
                      .....+....++..++.|+.+     +.+.+||+.+..-.... .+............. .++.+++.|+.++     .+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~i  261 (312)
T 4ery_A          193 PPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDN-----LV  261 (312)
T ss_dssp             CCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTS-----CE
T ss_pred             CceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCC-----EE
Confidence            111122223344466666643     36899999887644321 111111111122222 2456677766443     47


Q ss_pred             EEEECCCCc
Q 010551          272 IVLNMTKLA  280 (507)
Q Consensus       272 ~~~d~~~~~  280 (507)
                      .++|+.+..
T Consensus       262 ~vwd~~~~~  270 (312)
T 4ery_A          262 YIWNLQTKE  270 (312)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCch
Confidence            889988765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.56  E-value=0.02  Score=56.55  Aligned_cols=268  Identities=13%  Similarity=0.021  Sum_probs=129.3

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~   80 (507)
                      ..++++|+.+.+.......+....+...-..+.+  ++.+|+.|+.+     ..+.+||+.++.....-...        
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~~--------  210 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVFDLKTLAYKATVDLT--------  210 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTTCCEEEEEECS--------
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEEECCCceEEEEEcCC--------
Confidence            3478888888877654321000011111112223  67888887632     46899999876543322111        


Q ss_pred             cCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEE
Q 010551           81 DSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLII  156 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~  156 (507)
                               ...-.+++..  ++.+|+.++.+      ..+.+||+.+++......     ... ....+.+  ++..++
T Consensus       211 ---------~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~-----~~~-~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          211 ---------GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTD-----KIG-LPRGLLLSKDGKELY  269 (433)
T ss_dssp             ---------SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECC-----CCS-EEEEEEECTTSSEEE
T ss_pred             ---------CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEec-----CCC-CceEEEEcCCCCEEE
Confidence                     0111222222  45677766432      359999999887644331     111 1223333  344444


Q ss_pred             EcCCCCCCC--ccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          157 FGGEDRSRK--LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       157 ~GG~~~~~~--~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +++......  .-+.+++||+.+.+-......     +.....++... ++.+|+.++.+     +.+.+||+.+++-..
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-----PGNKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQK  339 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-----EECEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEECCCCccccCCCeEEEEECCCCcEEeeccC-----CCCcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEE
Confidence            444332211  134689999988764433211     01111222222 34677776543     469999998776543


Q ss_pred             cccCCCCCCCCCccEEEEE-CCeEEEEeccCCCC----------CcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEE
Q 010551          234 PEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNN----------GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS  302 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~----------~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~  302 (507)
                      .-.     ......+++.. +++.+++++.....          .-..++++|+.+..........        ......
T Consensus       340 ~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--------~~~~~~  406 (433)
T 3bws_A          340 SIP-----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--------NQPTGL  406 (433)
T ss_dssp             EEE-----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--------SSEEEE
T ss_pred             Eec-----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--------CCCceE
Confidence            211     11112233333 34444444322110          0136899999887654432211        112223


Q ss_pred             EEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          303 AIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       303 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      ...+.+..|++.+..+    ..+.+|++.
T Consensus       407 ~~s~dg~~l~~~~~~d----~~i~v~~~~  431 (433)
T 3bws_A          407 DVSPDNRYLVISDFLD----HQIRVYRRD  431 (433)
T ss_dssp             EECTTSCEEEEEETTT----TEEEEEEET
T ss_pred             EEcCCCCEEEEEECCC----CeEEEEEec
Confidence            3334445665544322    456666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.56  E-value=0.0045  Score=56.48  Aligned_cols=199  Identities=10%  Similarity=-0.045  Sum_probs=118.2

Q ss_pred             ceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEE
Q 010551           93 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        93 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      ..++...++.||+-.|..+.      +.++|+.|++-..-.    +|....+..++..+++||+....      .+.+++
T Consensus        57 tqGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V  120 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLFT  120 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEEE
T ss_pred             cceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEEE
Confidence            35677779999999886532      889999999743322    23334455677778899998653      357999


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-cccCCCCCCCCCc-cEEE
Q 010551          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG-HAGI  250 (507)
Q Consensus       173 ~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~-~~~~  250 (507)
                      ||+.+.+-..--.     .+..+.+++ .+++.||+.-|      .+.++.+|+.+.+-.. +.. +..+.+... --+.
T Consensus       121 ~D~~Tl~~~~ti~-----~~~eGwGLt-~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeLe  187 (268)
T 3nok_A          121 WSGMPPQRERTTR-----YSGEGWGLC-YWNGKLVRSDG------GTMLTFHEPDGFALVGAVQV-KLRGQPVELINELE  187 (268)
T ss_dssp             EETTTTEEEEEEE-----CSSCCCCEE-EETTEEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEE
T ss_pred             EECCcCcEEEEEe-----CCCceeEEe-cCCCEEEEECC------CCEEEEEcCCCCeEEEEEEe-CCCCcccccccccE
Confidence            9999877543321     122344444 45677998755      3589999999987554 222 222222111 2344


Q ss_pred             EECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCC---C--CCCCCCceEEEEE-cCceEEEEEccCCCCcCce
Q 010551          251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN---P--LASEGLSVCSAII-EGEHHLVAFGGYNGKYNNE  324 (507)
Q Consensus       251 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~---~--~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~  324 (507)
                      ..++++|+--     -..+++.++|+.+..-...-++.+..   +  ..........+.+ +..+.|||.|-    ....
T Consensus       188 ~~dG~lyanv-----w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK----~Wp~  258 (268)
T 3nok_A          188 CANGVIYANI-----WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK----LWPR  258 (268)
T ss_dssp             EETTEEEEEE-----TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET----TCSE
T ss_pred             EeCCEEEEEE-----CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC----CCCc
Confidence            5578888542     12457999999998755443332110   0  1111223333344 44678998774    3455


Q ss_pred             EEEEE
Q 010551          325 VFVMR  329 (507)
Q Consensus       325 ~~~~~  329 (507)
                      +|...
T Consensus       259 ~~ev~  263 (268)
T 3nok_A          259 LFEVR  263 (268)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            55543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.54  E-value=0.018  Score=62.25  Aligned_cols=268  Identities=11%  Similarity=0.060  Sum_probs=137.7

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCC----ccccceEEEE-CCE-EEEEcCCCCCccCCceEEEEccCCceeeeccccccCC
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPS----PRYKHAAAVF-DQK-LYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~----~r~~~~~~~~-~~~-iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~   76 (507)
                      .|+++||+.+..+.........+.    ...-++++.- ++. |+| |..     ...+++||+.++.+........   
T Consensus       377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~-----~~Gl~~~d~~~~~~~~~~~~~~---  447 (795)
T 4a2l_A          377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTH-----AGGLSILHRNSGQVENFNQRNS---  447 (795)
T ss_dssp             SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EET-----TTEEEEEETTTCCEEEECTTTS---
T ss_pred             CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeC-----cCceeEEeCCCCcEEEeecCCC---
Confidence            588899999999988763210111    1111233332 455 665 322     1358999999988877653210   


Q ss_pred             CccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCC--cCcEEEEE--C
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTR--GGHSVTLV--G  151 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r--~~~~~~~~--~  151 (507)
                               . .+...-.+++.. ++.|++...        .-+++||+.+++|....... .+...  ....+...  +
T Consensus       448 ---------~-l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~d~~  508 (795)
T 4a2l_A          448 ---------Q-LVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEK-DGTPVVSKQITTLFRDSH  508 (795)
T ss_dssp             ---------C-CSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCT-TCCBCCCCCEEEEEECTT
T ss_pred             ---------C-cCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccc-cccccCCceEEEEEECCC
Confidence                     1 111111222222 456666432        12899999999998875321 11111  11222233  3


Q ss_pred             CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCC-CC-CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-AP-RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       152 ~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p-~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      +.|++-..        +.+++||+.+..+ ........+ .+ ....+++.-.++.|++...       +-+++||+.++
T Consensus       509 g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-------~Gl~~~d~~~~  572 (795)
T 4a2l_A          509 KRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-------EGFYCFNEKDK  572 (795)
T ss_dssp             CCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-------SCEEEEETTTT
T ss_pred             CCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-------CCceeECCCCC
Confidence            56766432        2389999988888 443210001 11 1112222223455666322       24899999999


Q ss_pred             cEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCc
Q 010551          230 EWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE  308 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~  308 (507)
                      .+........+|... ..+++.- ++++++.+.       +.+..||+.+..+.......+..   .......++....+
T Consensus       573 ~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dGl~---~~~f~~~~~~~~~~  641 (795)
T 4a2l_A          573 QIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDGLQ---SNQFNTASYCRTSV  641 (795)
T ss_dssp             EEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGTCS---CSCEEEEEEEECTT
T ss_pred             cEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCCCc---cccCccCceeECCC
Confidence            888764332333322 2233332 456777642       34789999999888765433321   11222233344444


Q ss_pred             eEEEEEccCCCCcCceEEEEECC
Q 010551          309 HHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       309 ~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      ..|+ |||.+     -+..|++.
T Consensus       642 G~l~-~g~~~-----Gl~~~~p~  658 (795)
T 4a2l_A          642 GQMY-FGGIN-----GITTFRPE  658 (795)
T ss_dssp             SCEE-EEETT-----EEEEECGG
T ss_pred             CeEE-EecCC-----ceEEEcHH
Confidence            4454 46643     35556654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.49  E-value=0.082  Score=51.09  Aligned_cols=221  Identities=15%  Similarity=0.155  Sum_probs=119.6

Q ss_pred             CCCeEeeCCCC--ceEEeecCCCC----CCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeecccccc
Q 010551            3 SGSWHLELPYD--LWVTLPVSGAR----PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETEL   74 (507)
Q Consensus         3 ~~~~~~d~~~~--~W~~~~~~~~~----p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~   74 (507)
                      ..+++||+.+.  .|..-......    .......+.++.++.||+...      ...++.||+.+++  |+.....   
T Consensus        63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~---  133 (376)
T 3q7m_A           63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE------KAQVYALNTSDGTVAWQTKVAG---  133 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET------TSEEEEEETTTCCEEEEEECSS---
T ss_pred             CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC------CCEEEEEECCCCCEEEEEeCCC---
Confidence            35788898755  57654421100    012233444556888888653      2469999998875  6543211   


Q ss_pred             CCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECC
Q 010551           75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGS  152 (507)
Q Consensus        75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~  152 (507)
                                      ....+.+..++.+|+..+       ...++.||+.+++  |+..... +....+...+.+..++
T Consensus       134 ----------------~~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~  189 (376)
T 3q7m_A          134 ----------------EALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDM-PSLSLRGESAPTTAFG  189 (376)
T ss_dssp             ----------------CCCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC------CCCCCCEEETT
T ss_pred             ----------------ceEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCC-CceeecCCCCcEEECC
Confidence                            112233455788877543       2359999998886  8765421 1111112233445577


Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCC--CCCCC--CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEEC
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQT--PPAPR--YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL  226 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~--~p~~r--~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~  226 (507)
                      .+|+ |..      ...++.||+.+++  |+.......  ....+  ...+..++.++.+|+.+.      ...++.||+
T Consensus       190 ~v~~-g~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~~~d~  256 (376)
T 3q7m_A          190 AAVV-GGD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY------NGNLTALDL  256 (376)
T ss_dssp             EEEE-CCT------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT------TSCEEEEET
T ss_pred             EEEE-EcC------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec------CcEEEEEEC
Confidence            7665 332      2359999997764  765532100  00000  011222334665766432      136899999


Q ss_pred             CCCc--EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCc--EEE
Q 010551          227 QTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA--WSI  283 (507)
Q Consensus       227 ~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~--W~~  283 (507)
                      .+++  |....  +      ...+.+..++.+|+...      ...++.||+.+..  |+.
T Consensus       257 ~tG~~~w~~~~--~------~~~~~~~~~~~l~~~~~------~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          257 RSGQIMWKREL--G------SVNDFIVDGNRIYLVDQ------NDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             TTCCEEEEECC--C------CEEEEEEETTEEEEEET------TCCEEEEETTTCCEEEEE
T ss_pred             CCCcEEeeccC--C------CCCCceEECCEEEEEcC------CCeEEEEECCCCcEEEee
Confidence            8774  76531  1      12244556778888743      1258899988765  765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.47  E-value=0.055  Score=52.90  Aligned_cols=264  Identities=11%  Similarity=0.096  Sum_probs=129.1

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~   80 (507)
                      |..++++|+.+.....+..   ......-.+++.. ++.+++.|+.+     ..+.+||+.++.-...-..         
T Consensus       112 d~~v~lw~~~~~~~~~~~~---~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~---------  174 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAE---TDESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTKLRTMAG---------  174 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEE---CCTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECC---------
T ss_pred             CCeEEEeeCCCCcEeEeee---cCCCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeEEEEecC---------
Confidence            4456778888887766653   2111111222222 55566666543     3588999887654332211         


Q ss_pred             cCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEc
Q 010551           81 DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~G  158 (507)
                               .......+..++.+++.|+.+      ..+.+||+.+..-......+    ......++.+  ++.+++.|
T Consensus       175 ---------~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          175 ---------HQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG----HSSEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             ---------CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEE
T ss_pred             ---------CCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC----CCCCeeEEEEcCCCCEEEEE
Confidence                     112223344466667777643      34888998754322211111    1112223333  45677777


Q ss_pred             CCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccC
Q 010551          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       159 G~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~  237 (507)
                      +.++      .+.+||+.+..-...-.    .....-.+++... +..+++.||...   -..+.+||+.++.-...-. 
T Consensus       236 ~~d~------~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~-  301 (401)
T 4aez_A          236 GNDN------VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVD-  301 (401)
T ss_dssp             ETTS------CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEE-
T ss_pred             eCCC------eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEe-
Confidence            7643      58999998765332211    1111122333332 344777765211   1368999998876543211 


Q ss_pred             CCCCCCCCccEEEEE--CC-eEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEE
Q 010551          238 GDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAF  314 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~  314 (507)
                          ... ....+.+  ++ .+++.+|...    ..+.+||+.+.....+..+....     ....+....+.+. +++.
T Consensus       302 ----~~~-~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~~h~-----~~v~~~~~s~dg~-~l~s  366 (401)
T 4aez_A          302 ----AGS-QVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIPAHD-----TRVLYSALSPDGR-ILST  366 (401)
T ss_dssp             ----CSS-CEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEECCS-----SCCCEEEECTTSS-EEEE
T ss_pred             ----CCC-cEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEEecCCC-----CCEEEEEECCCCC-EEEE
Confidence                111 1122222  33 4444444322    25788888887666554332221     1122233333333 4555


Q ss_pred             ccCCCCcCceEEEEECCCCC
Q 010551          315 GGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       315 GG~~~~~~~~~~~~~~~~~~  334 (507)
                      ||.+    ..+.++++....
T Consensus       367 ~~~d----g~i~iw~~~~~~  382 (401)
T 4aez_A          367 AASD----ENLKFWRVYDGD  382 (401)
T ss_dssp             ECTT----SEEEEEECCC--
T ss_pred             EeCC----CcEEEEECCCCc
Confidence            6644    467778876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.45  E-value=0.0046  Score=57.06  Aligned_cols=233  Identities=7%  Similarity=-0.040  Sum_probs=117.6

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccC-CceeeeccccccCCCcc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~~~~~~~~~   79 (507)
                      |..+|++|+.+.+...+..   .+  ..-.+++.. ++..+++++      ...++++|+.+ +....+....       
T Consensus        21 ~~~i~~~d~~~~~~~~~~~---~~--~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~-------   82 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQ---TP--ELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF-------   82 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEE---ES--SCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTT-------
T ss_pred             ceeEEEEeCCCCceeeecc---CC--cceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEecccc-------
Confidence            4567899999988776653   11  111122222 455555554      23799999988 7665543221       


Q ss_pred             ccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEE
Q 010551           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~  157 (507)
                              ...........-+++.+++++....  ....++.++..++.-..+..   .. .  ...++.. ++ .|++.
T Consensus        83 --------~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~---~~-~--~~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           83 --------ATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK---NL-P--SYWHGWSPDGKSFTYC  146 (297)
T ss_dssp             --------CCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS---SS-S--EEEEEECTTSSEEEEE
T ss_pred             --------ccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec---CC-C--ccceEECCCCCEEEEE
Confidence                    0111122222224555555553322  24569999998877555431   11 1  1222222 33 55555


Q ss_pred             cCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      ++.+.    ...++.+|+.+.....+...     ......+....+ +.+++.+..++   ...+|.+++.......+..
T Consensus       147 ~~~~~----~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          147 GIRDQ----VFDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EEETT----EEEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCC
T ss_pred             ECCCC----ceEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEec
Confidence            55432    23577788887776655421     111122233334 43444433222   3468888877776665421


Q ss_pred             CCCCCCCCCccEEEEE--CCeEEEEeccCCCC------CcceEEEEECCCCcEEEecc
Q 010551          237 KGDLVTGRAGHAGITI--DENWYIVGGGDNNN------GCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~------~~~~~~~~d~~~~~W~~v~~  286 (507)
                         .  . .....+.+  +++.+++++.....      ....++++|+.+.....+..
T Consensus       215 ---~--~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  266 (297)
T 2ojh_A          215 ---S--A-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD  266 (297)
T ss_dssp             ---C--S-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred             ---C--C-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence               1  1 11112222  44555555433221      12468999999887766543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.42  E-value=0.012  Score=57.16  Aligned_cols=224  Identities=16%  Similarity=0.096  Sum_probs=118.8

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCC
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSS  114 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~  114 (507)
                      +.+|+.|+.+     ..+.++|+.++.-...-...                  . ....+.+   +..||+.|+.+    
T Consensus         2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~------------------~-~~~~~~~s~dg~~l~~~~~~d----   53 (391)
T 1l0q_A            2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG------------------S-NPMGAVISPDGTKVYVANAHS----   53 (391)
T ss_dssp             EEEEEEETTT-----TEEEEEETTTTEEEEEEECS------------------S-SEEEEEECTTSSEEEEEEGGG----
T ss_pred             CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC------------------C-CcceEEECCCCCEEEEECCCC----
Confidence            3567777643     46999999887654322211                  0 1122333   44677776543    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                        ..+.+||+.+++.......+   .   ....+.+   +..||+.+..+      +.+.+||+.+++.......+    
T Consensus        54 --~~i~v~d~~~~~~~~~~~~~---~---~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~----  115 (391)
T 1l0q_A           54 --NDVSIIDTATNNVIATVPAG---S---SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTG----  115 (391)
T ss_dssp             --TEEEEEETTTTEEEEEEECS---S---SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECS----
T ss_pred             --CeEEEEECCCCeEEEEEECC---C---CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeCC----
Confidence              35999999998765543221   1   2223333   33566655432      46999999988765443211    


Q ss_pred             CCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-C-CeEEEEeccCCCCCc
Q 010551          192 PRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGC  268 (507)
Q Consensus       192 ~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~  268 (507)
                       .....++... ++.+|+.++.+     +.+++||+.+++.......+..     ...++.. + ..+++.++.+     
T Consensus       116 -~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~~~-----  179 (391)
T 1l0q_A          116 -KSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGRS-----PKGIAVTPDGTKVYVANFDS-----  179 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCSS-----EEEEEECTTSSEEEEEETTT-----
T ss_pred             -CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCCC-----cceEEECCCCCEEEEEeCCC-----
Confidence             1123333333 44566666543     4799999998876553221211     1233332 2 3566665432     


Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      ..++++|+.+..........        ....+....+.+..|++.+..  .....++++|+...
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~g~~l~~~~~~--~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVE--------AAPSGIAVNPEGTKAYVTNVD--KYFNTVSMIDTGTN  234 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECS--------SEEEEEEECTTSSEEEEEEEC--SSCCEEEEEETTTT
T ss_pred             CEEEEEECCCCeEEEEEecC--------CCccceEECCCCCEEEEEecC--cCCCcEEEEECCCC
Confidence            35889999887654432211        111223333444556654421  12456777887543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.39  E-value=0.012  Score=55.59  Aligned_cols=268  Identities=10%  Similarity=-0.017  Sum_probs=130.3

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCce-eeeccccccCCCcc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAW-SNLRLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~~~~~~   79 (507)
                      ..+.++|+.+.+.......+ . .+   ..+++-  ++.||+.+..+     ..++++|+.++.. .......       
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~-~-~~---~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~-------   82 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLG-Y-DF---VDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEG-------   82 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECC-C-CE---EEEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEEC-------
T ss_pred             CeEEEEeCcccceeeeEEcc-C-Cc---ceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEecccC-------
Confidence            45778899988887665321 1 11   123322  34577776522     3799999998875 2222111       


Q ss_pred             ccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEE
Q 010551           80 EDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLI  155 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy  155 (507)
                              ..++  ++++..  +..|| .+.....   ...+++||+.++.-......+..|     +.++.. ++ .+|
T Consensus        83 --------~~~~--~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~-----~~~~~spdg~~l~  143 (331)
T 3u4y_A           83 --------QSSM--ADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPYDA-----VGIAISPNGNGLI  143 (331)
T ss_dssp             --------SSCC--CCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCTTE-----EEEEECTTSSCEE
T ss_pred             --------CCCc--cceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCCCc-----cceEECCCCCEEE
Confidence                    1112  212222  44566 3322111   226999999998765543322211     233332 33 577


Q ss_pred             EEcCCCCCCCccCc-EEEEECCCCc-EEEeccCCCCCCCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcE-
Q 010551          156 IFGGEDRSRKLLND-VHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEW-  231 (507)
Q Consensus       156 ~~GG~~~~~~~~n~-~~~~d~~t~~-W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W-  231 (507)
                      +.+..+      +. +.+|++.... ....... ..+.......++...+ +++|+.+..+     +.+.+||+.+++. 
T Consensus       144 ~~~~~~------~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          144 LIDRSS------ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENI  211 (331)
T ss_dssp             EEEETT------TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSC
T ss_pred             EEecCC------CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCCC-----CeEEEEECCCCccc
Confidence            665432      34 7777765422 1111000 0111111233333334 4577765432     4699999988775 


Q ss_pred             --EecccCCCCCCCCCccEEEEE-CCe-EEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCC---CCCCCCCceEEEE
Q 010551          232 --SQPEIKGDLVTGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN---PLASEGLSVCSAI  304 (507)
Q Consensus       232 --~~~~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~---~~~~~~~~~~~~~  304 (507)
                        ...-     +.......++.. +++ +|+...     ..+.++++|+.+.....+...+...   +.+.... .....
T Consensus       212 ~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  280 (331)
T 3u4y_A          212 TLLNAV-----GTNNLPGTIVVSRDGSTVYVLTE-----STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA-NQMAL  280 (331)
T ss_dssp             EEEEEE-----ECSSCCCCEEECTTSSEEEEECS-----SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC-CCEEE
T ss_pred             ceeeec-----cCCCCCceEEECCCCCEEEEEEc-----CCCEEEEEECCCCceeeecccccccccCCCCcccc-cceEE
Confidence              2211     111111223333 344 666543     1235889999988775554333221   1111111 12334


Q ss_pred             EcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          305 IEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       305 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      .+.+..|++.++.    .+.+.++|+...
T Consensus       281 spdg~~l~v~~~~----~~~v~v~d~~~~  305 (331)
T 3u4y_A          281 NKTETKLFISANI----SRELKVFTISGK  305 (331)
T ss_dssp             CTTSSEEEEEETT----TTEEEEEETTSC
T ss_pred             CCCCCEEEEecCC----CCcEEEEEecCC
Confidence            4455677775543    356888887643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=0.0089  Score=64.51  Aligned_cols=224  Identities=8%  Similarity=-0.006  Sum_probs=122.4

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      .|+++||+.+.+++.+... ..+. ..-.+++.- ++.|++...       ..+++||+.++.|.........       
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~-~~~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~-------  490 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELE-KNEL-LDVRVFYEDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNS-------  490 (781)
T ss_dssp             EEEEEECSSSCEEEECCST-TTCC-CCEEEEEECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTS-------
T ss_pred             CCEEEEcCCCCcEEEeccC-CCCC-CeEEEEEECCCCCEEEEEC-------CceEEEeCCCCeEEecccCccc-------
Confidence            5788899999999888632 1111 111222222 467766432       4599999999988776532210       


Q ss_pred             CCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEc
Q 010551           82 SGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~G  158 (507)
                          ..+.... .+++.. ++.|++.. ..      .-+++||+.++++........+|..  ...+...  ++.|++-.
T Consensus       491 ----~~~~~~i-~~i~~d~~g~lWigt-~~------~Gl~~~~~~~~~~~~~~~~~~l~~~--~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          491 ----QLLENFV-RSIAQDSEGRFWIGT-FG------GGVGIYTPDMQLVRKFNQYEGFCSN--TINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             ----SCSCSCE-EEEEECTTCCEEEEE-SS------SCEEEECTTCCEEEEECTTTTCSCS--CEEEEEECTTSCEEEEE
T ss_pred             ----cccccee-EEEEEcCCCCEEEEE-cC------CCEEEEeCCCCeEEEccCCCCCCCC--eeEEEEECCCCCEEEEE
Confidence                1111111 222222 45666542 21      1289999999999887642223221  1222223  45676643


Q ss_pred             CCCCCCCccCcE-EEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccC
Q 010551          159 GEDRSRKLLNDV-HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       159 G~~~~~~~~n~~-~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~  237 (507)
                      .        +-+ ++||+.+.++........+|... ..+++.-.++.|++.+.       +-+.+||+.+..+......
T Consensus       557 ~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~  620 (781)
T 3v9f_A          557 G--------EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHS  620 (781)
T ss_dssp             T--------TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGG
T ss_pred             C--------CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEcC-------CceEEEECCCCceEEeccc
Confidence            2        236 89999999888876543444333 24444444566776542       3589999999998876543


Q ss_pred             CCCCCCCCc-cEEEEECCeEEEEeccCCCCCcceEEEEECCC
Q 010551          238 GDLVTGRAG-HAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       238 ~~~p~~r~~-~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                      ..++...+. .+++...+-.+.|||.+      -+..||+..
T Consensus       621 dGl~~~~f~~~~~~~~~~G~l~~g~~~------Gl~~f~p~~  656 (781)
T 3v9f_A          621 NNIPQGSFISGCVTKDHNGLIYFGSIN------GLCFFNPDI  656 (781)
T ss_dssp             GTCCSSCEEEEEEEECTTSCEEEEETT------EEEEECSCC
T ss_pred             CCccccccccCceEECCCCEEEEECCC------ceEEEChhh
Confidence            334433322 23333334445556533      245666543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.37  E-value=0.04  Score=52.00  Aligned_cols=276  Identities=13%  Similarity=0.054  Sum_probs=122.6

Q ss_pred             CCCeEeeCC-CCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEcc--CCceeeeccccccCCC
Q 010551            3 SGSWHLELP-YDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDAD   77 (507)
Q Consensus         3 ~~~~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~   77 (507)
                      ..+++||+. ......+..   .+.....+.++..  +..||+.+..+     ..+.+|++.  ++++..+......   
T Consensus        15 ~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~---   83 (343)
T 1ri6_A           15 QQIHVWNLNHEGALTLTQV---VDVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESALP---   83 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEE---EECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEECS---
T ss_pred             CeEEEEEECCCCcEEEeee---EecCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeeccccccC---
Confidence            446677664 455554432   1122222233332  34466655421     467787776  7777765443211   


Q ss_pred             ccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEE--CC
Q 010551           78 KTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLV--GS  152 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~  152 (507)
                                  ... ..++..  ++.||+.+..      ...+.+||+.++. .......   +....-+.++..  +.
T Consensus        84 ------------~~~-~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~  141 (343)
T 1ri6_A           84 ------------GSL-THISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNR  141 (343)
T ss_dssp             ------------SCC-SEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSS
T ss_pred             ------------CCC-cEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccc---cCCCCceEEEECCCCC
Confidence                        111 122222  3446665432      2347788774332 2222211   111111222222  33


Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCC-CcEEEec--cCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECC-
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLET-MTWDAVE--VTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQ-  227 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t-~~W~~~~--~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~-  227 (507)
                      .||+.+..      .+.+.+||+.+ .+...+.  .. ..+....-..++... ++++|+.+..+     +.+.+||+. 
T Consensus       142 ~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~  209 (343)
T 1ri6_A          142 TLWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKD  209 (343)
T ss_dssp             EEEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSC
T ss_pred             EEEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEecC
Confidence            67665522      24589999987 6665432  10 011111111233333 34566665332     468888884 


Q ss_pred             -CCcEEecccCCCCCCC---CCccEEEEE--CC-eEEEEeccCCCCCcceEEEEECC--CCcEEEeccCCCCCCCCCCCC
Q 010551          228 -TNEWSQPEIKGDLVTG---RAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEGL  298 (507)
Q Consensus       228 -~~~W~~~~~~~~~p~~---r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~d~~--~~~W~~v~~~~~~~~~~~~~~  298 (507)
                       ++.+.........|..   ......+.+  ++ .+|+.+..+     ..+.+||+.  +..+..+..++..      +.
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~~------~~  278 (343)
T 1ri6_A          210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVLSKEGFQPTE------TQ  278 (343)
T ss_dssp             TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCEEEEEEEECS------SS
T ss_pred             CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----CEEEEEEEcCCCCceEEeeeecCC------Cc
Confidence             4544332211222221   111222333  23 566554322     357788877  5566665443321      11


Q ss_pred             ceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCC
Q 010551          299 SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       299 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~  336 (507)
                      .......+.+.+|++.++.++  .-.+|.+|.....+.
T Consensus       279 ~~~~~~s~dg~~l~~~~~~~~--~v~v~~~d~~~g~~~  314 (343)
T 1ri6_A          279 PRGFNVDHSGKYLIAAGQKSH--HISVYEIVGEQGLLH  314 (343)
T ss_dssp             CCCEEECTTSSEEEEECTTTC--EEEEEEEETTTTEEE
T ss_pred             cceEEECCCCCEEEEecCCCC--eEEEEEEcCCCceee
Confidence            122333444556776554322  233555576555443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.34  E-value=0.065  Score=51.23  Aligned_cols=231  Identities=13%  Similarity=0.110  Sum_probs=108.4

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCcccc-ceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYK-HAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~   79 (507)
                      |..+.+||+....|..+..   ....... .+++.. ++.+++.|+.+     ..+.+||+.++.+........      
T Consensus        29 d~~v~i~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~------   94 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHE---LKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILR------   94 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEE---EECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCC------
T ss_pred             CCEEEEEeCCCCcEEeeee---ecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeec------
Confidence            3456778888887655543   1111111 122222 45666666643     358899998888765443221      


Q ss_pred             ccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEE--CCEE
Q 010551           80 EDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLV--GSRL  154 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~i  154 (507)
                                .......+.+  ++..++.|+.+.      .+.+||+.+.. |...... ..+. .....++.+  ++..
T Consensus        95 ----------~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~-~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           95 ----------INRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPI-RSTVLSLDWHPNSVL  156 (372)
T ss_dssp             ----------CSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTC-CSCEEEEEECTTSSE
T ss_pred             ----------CCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-eccc-CCCeeEEEEcCCCCE
Confidence                      0111222333  455666666432      26666655543 3322211 1111 112223333  4566


Q ss_pred             EEEcCCCCCCCccCcEEEEECCCCc----------------EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCC
Q 010551          155 IIFGGEDRSRKLLNDVHFLDLETMT----------------WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF  218 (507)
Q Consensus       155 y~~GG~~~~~~~~n~~~~~d~~t~~----------------W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~  218 (507)
                      ++.|+.++      .+.+||+....                -..+...  ......-.+++...++.+++.|+.+     
T Consensus       157 l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----  223 (372)
T 1k8k_C          157 LAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHD-----  223 (372)
T ss_dssp             EEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETT-----
T ss_pred             EEEEcCCC------CEEEEEcccccccccccccccccccchhhheEec--CCCCCeEEEEEECCCCCEEEEEeCC-----
Confidence            77777543      58888864211                1111110  0001111222233344466666643     


Q ss_pred             CcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCC--CcEEEeccC
Q 010551          219 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK--LAWSILTSV  287 (507)
Q Consensus       219 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~--~~W~~v~~~  287 (507)
                      +.+.+||+.+..-...-. ..   .....+++.. ++.+++.| .++     .+.+|++.+  +.|..+..+
T Consensus       224 ~~i~i~d~~~~~~~~~~~-~~---~~~v~~~~~~~~~~~l~~~-~d~-----~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          224 STVCLADADKKMAVATLA-SE---TLPLLAVTFITESSLVAAG-HDC-----FPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             TEEEEEEGGGTTEEEEEE-CS---SCCEEEEEEEETTEEEEEE-TTS-----SCEEEEEETTTTEEEECCCC
T ss_pred             CEEEEEECCCCceeEEEc-cC---CCCeEEEEEecCCCEEEEE-eCC-----eEEEEEccCcCceEEEeecc
Confidence            358899988766433211 10   1111222332 55655554 322     356777776  888876544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.32  E-value=0.07  Score=52.62  Aligned_cols=239  Identities=10%  Similarity=0.109  Sum_probs=121.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.|...+...++.....++++|+....-..+....                 ..  ...+.+  +++.+++++....  
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~-----------------~~--v~~~~~Spdg~~la~~s~~~~--  201 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-----------------QP--LMSPAWSPDGSKLAYVTFESG--  201 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-----------------SC--EEEEEECTTSSEEEEEECTTS--
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC-----------------Cc--ceeeEEcCCCCEEEEEEecCC--
Confidence            445544443322223367999998765544433211                 01  122222  4555555554322  


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                       ...++++|+.+++...+.   ..+.   ...+..+  ++ .|++.+..+.    ...++.+|+.+.+...+...     
T Consensus       202 -~~~i~~~d~~tg~~~~l~---~~~~---~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~-----  265 (415)
T 2hqs_A          202 -RSALVIQTLANGAVRQVA---SFPR---HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG-----  265 (415)
T ss_dssp             -SCEEEEEETTTCCEEEEE---CCSS---CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCC-----
T ss_pred             -CcEEEEEECCCCcEEEee---cCCC---cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCC-----
Confidence             246999999999877654   2111   1223333  34 5555554432    34699999998887655421     


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcc
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  269 (507)
                      .......+...++..+++++..+.  ...+|.+|+.++.-..+..     .... ...+.+  +++.+++++...  ...
T Consensus       266 ~~~~~~~~~spdg~~l~~~s~~~g--~~~i~~~d~~~~~~~~l~~-----~~~~-~~~~~~spdG~~l~~~~~~~--g~~  335 (415)
T 2hqs_A          266 RSNNTEPTWFPDSQNLAFTSDQAG--RPQVYKVNINGGAPQRITW-----EGSQ-NQDADVSSDGKFMVMVSSNG--GQQ  335 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTSSCCEECCC-----SSSE-EEEEEECTTSSEEEEEEECS--SCE
T ss_pred             CCcccceEECCCCCEEEEEECCCC--CcEEEEEECCCCCEEEEec-----CCCc-ccCeEECCCCCEEEEEECcC--Cce
Confidence            111122222334444444443211  2479999998876554321     1111 112222  455555554322  235


Q ss_pred             eEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       270 ~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      .++++|+.+.....+....         ........+++. .+++++..+. ...+|++|+...
T Consensus       336 ~i~~~d~~~~~~~~l~~~~---------~~~~~~~spdg~-~l~~~s~~~~-~~~l~~~d~~g~  388 (415)
T 2hqs_A          336 HIAKQDLATGGVQVLSSTF---------LDETPSLAPNGT-MVIYSSSQGM-GSVLNLVSTDGR  388 (415)
T ss_dssp             EEEEEETTTCCEEECCCSS---------SCEEEEECTTSS-EEEEEEEETT-EEEEEEEETTSC
T ss_pred             EEEEEECCCCCEEEecCCC---------CcCCeEEcCCCC-EEEEEEcCCC-ccEEEEEECCCC
Confidence            7899999998876653221         122222333333 4444543321 347899998644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.30  E-value=0.071  Score=52.74  Aligned_cols=214  Identities=13%  Similarity=0.140  Sum_probs=108.8

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      |..+.++|..+.+-...-.     .....-.++..++.+++.|+.+     ..+.++|+.++.-...-..          
T Consensus       152 dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~----------  211 (435)
T 1p22_A          152 DNTIKIWDKNTLECKRILT-----GHTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEMLNTLIH----------  211 (435)
T ss_dssp             SSCEEEEESSSCCEEEEEC-----CCSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCCEEEEECC----------
T ss_pred             CCeEEEEeCCCCeEEEEEc-----CCCCcEEEEEECCCEEEEEcCC-----CeEEEEECCCCcEEEEEcC----------
Confidence            3345566666554433321     1111222333467777777744     3588999988754322111          


Q ss_pred             CCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCC
Q 010551           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGED  161 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~  161 (507)
                              .......+.+.+..++.|+.++      .+.+||..++.-.....  ..........++.+++..++.|+.+
T Consensus       212 --------h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d  275 (435)
T 1p22_A          212 --------HCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASGD  275 (435)
T ss_dssp             --------CCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEETT
T ss_pred             --------CCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEEEEEeCC
Confidence                    1112233444555666666432      38888988765321110  0111112223344466666666654


Q ss_pred             CCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCC
Q 010551          162 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV  241 (507)
Q Consensus       162 ~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p  241 (507)
                            +.+.+||+.+.+-...-.     ........+..+++ +++.|+.+     +.+.+||+.++.-...-. +   
T Consensus       276 ------g~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~~-~---  334 (435)
T 1p22_A          276 ------RTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVLE-G---  334 (435)
T ss_dssp             ------SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEEC-C---
T ss_pred             ------CeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCCC-EEEEEeCC-----CeEEEEECCCCCEEEEEe-C---
Confidence                  358899998775433211     01112233444555 66666654     368999998765433210 1   


Q ss_pred             CCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCC
Q 010551          242 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       242 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                       ....-.++..++..++.|+.++     .+.+||+.+
T Consensus       335 -h~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~  365 (435)
T 1p22_A          335 -HEELVRCIRFDNKRIVSGAYDG-----KIKVWDLVA  365 (435)
T ss_dssp             -CSSCEEEEECCSSEEEEEETTS-----CEEEEEHHH
T ss_pred             -CcCcEEEEEecCCEEEEEeCCC-----cEEEEECCC
Confidence             1111223344777788877543     367777644

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.26  E-value=0.068  Score=50.17  Aligned_cols=188  Identities=17%  Similarity=0.040  Sum_probs=97.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++...........                ......+.+  ++..++.|+.+    
T Consensus       108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~d----  162 (337)
T 1gxr_A          108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSS----------------APACYALAISPDSKVCFSCCSD----  162 (337)
T ss_dssp             TSSEEEEEESS-----SEEEEEECCCC--EEEEEEECS----------------SSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEEcCC-----CcEEEEECCCCCcceeeecccC----------------CCceEEEEECCCCCEEEEEeCC----
Confidence            45556666533     4689999988775443332210                111222222  45566666643    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                        ..+.+||+.++.......   ..  .....++.+  ++..++.|+.+      +.+.+||+.+.+-.....   .  .
T Consensus       163 --g~v~~~d~~~~~~~~~~~---~~--~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~--~  224 (337)
T 1gxr_A          163 --GNIAVWDLHNQTLVRQFQ---GH--TDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---F--T  224 (337)
T ss_dssp             --SCEEEEETTTTEEEEEEC---CC--SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---C--S
T ss_pred             --CcEEEEeCCCCceeeeee---cc--cCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---C--C
Confidence              238899999886544321   11  112223333  45566666643      358999998776433321   1  1


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceE
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~  271 (507)
                      ....+++...++.++++|+.+     +.+.+||+.+..-....  .   ....-.++... ++.+++.|+.++     .+
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~~dg-----~i  289 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLH--L---HESCVLSLKFAYCGKWFVSTGKDN-----LL  289 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEEC--C---CSSCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred             CceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEc--C---CccceeEEEECCCCCEEEEecCCC-----cE
Confidence            112233333455566666643     35889998876543321  1   11111122222 456667766432     57


Q ss_pred             EEEECCCCcEE
Q 010551          272 IVLNMTKLAWS  282 (507)
Q Consensus       272 ~~~d~~~~~W~  282 (507)
                      .+||+.+..-.
T Consensus       290 ~~~~~~~~~~~  300 (337)
T 1gxr_A          290 NAWRTPYGASI  300 (337)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCeEE
Confidence            88998877644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.24  E-value=0.092  Score=51.92  Aligned_cols=189  Identities=14%  Similarity=0.155  Sum_probs=102.7

Q ss_pred             EEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCC
Q 010551           34 AVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS  113 (507)
Q Consensus        34 ~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~  113 (507)
                      +..++..++.|+.+     ..+.+||..++.-...-...                  .....++..++.+++.|+.++  
T Consensus       139 ~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h------------------~~~v~~l~~~~~~l~sg~~dg--  193 (435)
T 1p22_A          139 LQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILTGH------------------TGSVLCLQYDERVIITGSSDS--  193 (435)
T ss_dssp             EECCSSEEEEEESS-----SCEEEEESSSCCEEEEECCC------------------SSCEEEEECCSSEEEEEETTS--
T ss_pred             EEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCC------------------CCcEEEEEECCCEEEEEcCCC--
Confidence            33467777777644     46899998876543322111                  112234444777777777543  


Q ss_pred             CCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          114 SDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       114 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                          .+.+||..++.-.....     .......++.+++..++.|+.++      .+.+||+.+..-.....  ......
T Consensus       194 ----~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~  256 (435)
T 1p22_A          194 ----TVRVWDVNTGEMLNTLI-----HHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHR  256 (435)
T ss_dssp             ----CEEEEESSSCCEEEEEC-----CCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCS
T ss_pred             ----eEEEEECCCCcEEEEEc-----CCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCC
Confidence                38899998886543321     11122334444555667777543      58889987654221100  001112


Q ss_pred             CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEE
Q 010551          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIV  273 (507)
Q Consensus       194 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  273 (507)
                      .....+..+++ .++.|+.+     ..+.+||+.+..-...-.     .......++..++.+++.|+.++     .+.+
T Consensus       257 ~~v~~~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~g~~dg-----~i~i  320 (435)
T 1p22_A          257 AAVNVVDFDDK-YIVSASGD-----RTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGSSDN-----TIRL  320 (435)
T ss_dssp             SCEEEEEEETT-EEEEEETT-----SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTEEEEEETTS-----CEEE
T ss_pred             CcEEEEEeCCC-EEEEEeCC-----CeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCCCEEEEEeCCC-----eEEE
Confidence            22233444555 55555543     368899998876443211     11112233344667777777543     4788


Q ss_pred             EECCCCc
Q 010551          274 LNMTKLA  280 (507)
Q Consensus       274 ~d~~~~~  280 (507)
                      ||+.+..
T Consensus       321 wd~~~~~  327 (435)
T 1p22_A          321 WDIECGA  327 (435)
T ss_dssp             EETTTCC
T ss_pred             EECCCCC
Confidence            9988764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.23  E-value=0.26  Score=52.17  Aligned_cols=129  Identities=18%  Similarity=0.153  Sum_probs=74.3

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCC---ccceeEEEECCEEEE
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPP---MSDHCMVKWGTKLLI  105 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~---r~~~~~~~~~~~lyv  105 (507)
                      .+-++.++.||+...      .+.++.+|..+++  |+.-......           ..+..   ....+.++.++.||+
T Consensus        64 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~v~v  126 (689)
T 1yiq_A           64 ATPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRH-----------RAGEACCDAVNRGVAVWKGKVYV  126 (689)
T ss_dssp             CCCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGG-----------GGGGCTTCSCCCCCEEETTEEEE
T ss_pred             ecCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCcc-----------ccccccccCCCCccEEECCEEEE
Confidence            344567999999764      3469999998875  8754322100           00000   112234567888888


Q ss_pred             EeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EE
Q 010551          106 LGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WD  181 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~  181 (507)
                      ...       ...++.+|..|++  |+...............+.++.++.+|+-.+ .........++.||..|++  |+
T Consensus       127 ~~~-------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~-~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          127 GVL-------DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNG-GAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             ECT-------TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEE
T ss_pred             Ecc-------CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeC-CCccCCCCEEEEEECCCCcEEEE
Confidence            642       2359999999886  8765420111111222234556888776322 2111134579999998876  87


Q ss_pred             Eec
Q 010551          182 AVE  184 (507)
Q Consensus       182 ~~~  184 (507)
                      .-.
T Consensus       199 ~~~  201 (689)
T 1yiq_A          199 FYT  201 (689)
T ss_dssp             EES
T ss_pred             ecc
Confidence            653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.21  E-value=0.016  Score=57.28  Aligned_cols=231  Identities=10%  Similarity=-0.027  Sum_probs=119.3

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      ..+|++|+....-..+...   . ... .+.+.. +++.+++++.+++  ...++++|+.++....+....         
T Consensus       159 ~~i~i~d~~g~~~~~l~~~---~-~~v-~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~---------  222 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRS---P-QPL-MSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFP---------  222 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEE---S-SCE-EEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCS---------
T ss_pred             ceEEEEcCCCCCCEEEeCC---C-Ccc-eeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCC---------
Confidence            3467777765554444321   0 011 111211 4555555554332  257999999988776544221         


Q ss_pred             CCCcCCCCCccceeEEEE--CC-EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEE
Q 010551           82 SGLLEVLPPMSDHCMVKW--GT-KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLII  156 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~  156 (507)
                               . ....+.+  ++ .|++.+....    ...++++|+.++....+..   .+   .......+  +++.++
T Consensus       223 ---------~-~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~---~~---~~~~~~~~spdg~~l~  282 (415)
T 2hqs_A          223 ---------R-HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---GR---SNNTEPTWFPDSQNLA  282 (415)
T ss_dssp             ---------S-CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCC---CS---SCEEEEEECTTSSEEE
T ss_pred             ---------C-cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcC---CC---CcccceEECCCCCEEE
Confidence                     1 1222333  34 4555544322    3469999999988765531   11   11222333  444444


Q ss_pred             EcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          157 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       157 ~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      +++...   ....++.+|+.+..-..+...     .......+...++..+++++....  ...++++|+.++....+..
T Consensus       283 ~~s~~~---g~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~  352 (415)
T 2hqs_A          283 FTSDQA---GRPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSS  352 (415)
T ss_dssp             EEECTT---SSCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCC
T ss_pred             EEECCC---CCcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecC
Confidence            443221   134699999988775554321     111122233334444555443221  3479999999988866532


Q ss_pred             CCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccC
Q 010551          237 KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~  287 (507)
                        .   . ...+.+.. +++.+++++....  ...++++|+.......++..
T Consensus       353 --~---~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~~~  396 (415)
T 2hqs_A          353 --T---F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLPAT  396 (415)
T ss_dssp             --S---S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECCCS
T ss_pred             --C---C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEeeCC
Confidence              1   1 11222222 4566666654322  34789999988877776543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.16  E-value=0.068  Score=50.22  Aligned_cols=270  Identities=12%  Similarity=-0.050  Sum_probs=126.3

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCcc-ccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPR-YKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r-~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~   78 (507)
                      |..++++|+.+.+-...-.   .+... ..+.+++.  ++.+|+.+..     ...++++|+.++.-...-.....    
T Consensus        10 ~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~----   77 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVIT---IADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEE---CTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBT----
T ss_pred             CCeEEEEECCCCcEEEEEE---cCCCCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCCc----
Confidence            5568899998876654332   11111 12233333  3467777652     24699999988765432211100    


Q ss_pred             cccCCCcCCCCCccceeEEEE--CCEEEEEeccC---CCCC--CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-
Q 010551           79 TEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHY---KKSS--DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-  150 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~---~~~~--~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-  150 (507)
                             . .....-+.++..  ++.||+.....   ....  ....+++||+.+++.......+..     -..++.. 
T Consensus        78 -------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~  144 (337)
T 1pby_B           78 -------E-ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWAR  144 (337)
T ss_dssp             -------T-EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECT
T ss_pred             -------c-cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECC
Confidence                   0 000011122222  34677764210   0100  135699999998876544322211     1222222 


Q ss_pred             CC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCC-------------C-
Q 010551          151 GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH-------------S-  215 (507)
Q Consensus       151 ~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-------------~-  215 (507)
                      ++ .||+.+         +.++++|+.+.+-...-..+..+.+.    ...-++..+|+.+..+.             . 
T Consensus       145 dg~~l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~----~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T 1pby_B          145 DGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWEAET----YAQPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             TSSCEEEES---------SSEEEEETTTTEEEEEECSTTTTTTT----BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             CCCEEEEeC---------CeEEEEECCCCcEeeeeeccccCCCc----eeCCCccEEeeeccCCCceeeeeecccccccc
Confidence            33 466652         35999999888754332222211111    11112222332221110             0 


Q ss_pred             ----CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CC-eEEEEeccCCCCCcceEEEEECCCCcEEEeccCCC
Q 010551          216 ----IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  289 (507)
Q Consensus       216 ----~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~  289 (507)
                          .....++++|+.+++-..+..   .+.....++++.. ++ .+|+.        ...+++||+.+..-......+.
T Consensus       212 ~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~~  280 (337)
T 1pby_B          212 ADPTAYRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLPH  280 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECSS
T ss_pred             ccccccccceEEEeCCCCCceEeec---CCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCCC
Confidence                011158899998887653221   1111112223332 23 44444        1478999998876433222211


Q ss_pred             CCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          290 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                              ...+....+.+..|++. +.    .+.+.++|+...
T Consensus       281 --------~~~~~~~s~dg~~l~~~-~~----~~~i~v~d~~~~  311 (337)
T 1pby_B          281 --------SYYSVNVSTDGSTVWLG-GA----LGDLAAYDAETL  311 (337)
T ss_dssp             --------CCCEEEECTTSCEEEEE-SB----SSEEEEEETTTC
T ss_pred             --------ceeeEEECCCCCEEEEE-cC----CCcEEEEECcCC
Confidence                    11223334445567664 32    367888998655

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.12  E-value=0.076  Score=54.52  Aligned_cols=273  Identities=14%  Similarity=0.095  Sum_probs=134.1

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEc--cCCceeeeccccccCCCcc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKT   79 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~   79 (507)
                      .+.++|+.+.+-...-..|.     ..|.+++.  +..||+.+. +     +.+.+||+  .+++-...-..+       
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t~~~~~~i~~g-------  221 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAKEPTKVAEIKIG-------  221 (543)
T ss_dssp             EEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEET-T-----SEEEEEETTSSSCEEEEEEECC-------
T ss_pred             eEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEECC-C-----CeEEEEECcCCCCcEEEEEecC-------
Confidence            45667777766543321111     14544443  446666653 1     67999999  555432211111       


Q ss_pred             ccCCCcCCCCCccceeEEEE----CC-EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCC--------CCCCcCcE
Q 010551           80 EDSGLLEVLPPMSDHCMVKW----GT-KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------PVTRGGHS  146 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~----~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~--------p~~r~~~~  146 (507)
                                ....+.+..-    ++ .||+. +..     ...+.++|..+++-........+        |.++....
T Consensus       222 ----------~~p~~va~sp~~~~dg~~l~v~-~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i  285 (543)
T 1nir_A          222 ----------IEARSVESSKFKGYEDRYTIAG-AYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  285 (543)
T ss_dssp             ----------SEEEEEEECCSTTCTTTEEEEE-EEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             ----------CCcceEEeCCCcCCCCCEEEEE-Ecc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEE
Confidence                      1111222222    34 45554 322     23588899988875443322111        11222222


Q ss_pred             EEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEEE
Q 010551          147 VTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       147 ~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~  224 (507)
                      +... +..+|+....      .+.++.+|..+.+-..+..   .+..+.-+.++...+ +++|+.+..     .+.+.++
T Consensus       286 ~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~  351 (543)
T 1nir_A          286 IASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVI  351 (543)
T ss_dssp             EECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEE
T ss_pred             EECCCCCEEEEEECC------CCeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEecC-----CCeEEEE
Confidence            2222 3455544322      3579999987754221111   111233334444434 445554332     2578899


Q ss_pred             ECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCC-----cEEEeccCCCCCCCCCCC
Q 010551          225 DLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL-----AWSILTSVKGRNPLASEG  297 (507)
Q Consensus       225 d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~-----~W~~v~~~~~~~~~~~~~  297 (507)
                      |+.+++-...-..+..|.+-.+... ..  ++.+|+.+....    ..+-++|+.+.     .|+.+..++...     +
T Consensus       352 D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~l~~~g-----~  421 (543)
T 1nir_A          352 DSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAELQGQG-----G  421 (543)
T ss_dssp             ETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSC-----S
T ss_pred             ECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEEEEcCC-----C
Confidence            9999876653333455554333332 22  256777654221    25778887762     377666554321     1


Q ss_pred             CceEEEEEcCceEEEEEccCCCC--cCceEEEEECCCCC
Q 010551          298 LSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRD  334 (507)
Q Consensus       298 ~~~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~~~~~~  334 (507)
                      ........+...+|++-.-.+..  ..+.|.+||+.+..
T Consensus       422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            12223344555677763311211  35689999998765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.10  E-value=0.2  Score=53.97  Aligned_cols=236  Identities=9%  Similarity=0.028  Sum_probs=119.9

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccc-cceEEE-E--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRY-KHAAAV-F--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~-~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~   78 (507)
                      .|+++||+....+..+......+.... ....+. .  ++.|+|- ..     ...+..||+.+..+.........    
T Consensus       282 ~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWig-t~-----~~Gl~~~~~~~~~~~~~~~~~~~----  351 (795)
T 4a2l_A          282 NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLG-TY-----FGGLNYYHPIRNRFKNIRNIPYK----  351 (795)
T ss_dssp             SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEE-ES-----SSCEEEECGGGGSSEEECCCTTS----
T ss_pred             ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEE-EC-----CCCeEEeCCCcccceEEcCCCCC----
Confidence            478899999999998864211111111 111111 1  4566653 21     13488999988877765432210    


Q ss_pred             cccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCC---C-CcCcEEEEE-CC
Q 010551           79 TEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV---T-RGGHSVTLV-GS  152 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~---~-r~~~~~~~~-~~  152 (507)
                             ...+...-.+++.- ++.|++ |...      .-+..||+.++.+.........+.   + ..-++++.- ++
T Consensus       352 -------~~l~~~~V~~i~~d~~g~lWi-Gt~~------~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          352 -------NSLSDNVVSCIVEDKDKNLWI-GTND------GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             -------SSCSCSSEEEEEECTTSCEEE-EESS------SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             -------CCCCCCeeEEEEECCCCCEEE-EECC------CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence                   11111112223322 456666 3221      128899999999887753210111   1 111233332 45


Q ss_pred             E-EEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          153 R-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       153 ~-iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      . |++ |..+      +.+++||+.++++.......+......-.+++...++.|+|-..       +-+++||+.++.|
T Consensus       418 ~~lWi-gt~~------~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~  483 (795)
T 4a2l_A          418 SLVYI-GTHA------GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSF  483 (795)
T ss_dssp             TEEEE-EETT------TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTTEE
T ss_pred             CEEEE-EeCc------CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCCeE
Confidence            6 555 4321      34899999999888875421111111122223233455666322       3589999999999


Q ss_pred             EecccCCC-CCCC-CCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEe
Q 010551          232 SQPEIKGD-LVTG-RAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       232 ~~~~~~~~-~p~~-r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v  284 (507)
                      ........ ...+ ..-.+++.. ++.++|...       ..+++||+.+..+ .+
T Consensus       484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~Gl~~~~~~~~~~-~~  531 (795)
T 4a2l_A          484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------EGLSVFKQEGLDI-QK  531 (795)
T ss_dssp             EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------SCEEEEEEETTEE-EE
T ss_pred             EEccccccccccCCceEEEEEECCCCCEEEEeC-------CceEEEeCCCCeE-EE
Confidence            87642210 0111 111222222 356666432       1388999988887 44

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.08  E-value=0.077  Score=50.47  Aligned_cols=277  Identities=13%  Similarity=0.107  Sum_probs=127.0

Q ss_pred             CeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCC
Q 010551            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      +|.+|+.+.++..+......   .....+++- +++||+.+...   ....+++||+.++.++.+......         
T Consensus        20 v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~---------   84 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAP---------   84 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEE---------
T ss_pred             EEEEcCCCCeEEEeeeeecc---CCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecC---------
Confidence            67778888888776432112   112223332 66777765311   124699999988887766542210         


Q ss_pred             CcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECC-CCcEEEee---cCCCCCCCCcC---cEEEEE--CCE
Q 010551           84 LLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVME---TSGKVPVTRGG---HSVTLV--GSR  153 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~---~~g~~p~~r~~---~~~~~~--~~~  153 (507)
                           .....+.+..- +..||+.+..      ...+.+|++. ++....+.   ..+..|.+|..   ...+.+  +++
T Consensus        85 -----~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~  153 (347)
T 3hfq_A           85 -----GTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR  153 (347)
T ss_dssp             -----SCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC
T ss_pred             -----CCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc
Confidence                 01112222222 3456665431      2347777774 44444332   22223322211   122333  456


Q ss_pred             EEEEcCCCCCCCccCcEEEEECC-CCcEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECC--CC
Q 010551          154 LIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQ--TN  229 (507)
Q Consensus       154 iy~~GG~~~~~~~~n~~~~~d~~-t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~--~~  229 (507)
                      +|+.+..      .+.+.+||+. +++...+.... .+....-..++... ++++|+.+..+     +.+.+|++.  ++
T Consensus       154 l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g  221 (347)
T 3hfq_A          154 LAVIDLG------SDKVYVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTG  221 (347)
T ss_dssp             EEEEETT------TTEEEEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTT
T ss_pred             EEEEeCC------CCEEEEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC
Confidence            6665432      2468899987 56555432110 11111111233333 44577765432     345555544  56


Q ss_pred             cEEecccCCCCCCC---CCccEEEEE--CC-eEEEEeccCCCCCcceEEEEECCC-CcEEEeccCCCCCCCCCCCCceEE
Q 010551          230 EWSQPEIKGDLVTG---RAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCS  302 (507)
Q Consensus       230 ~W~~~~~~~~~p~~---r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~d~~~-~~W~~v~~~~~~~~~~~~~~~~~~  302 (507)
                      .+..+......|..   ......+.+  ++ .+|+.+..     .+.+.+|++.. ..+..+..++...     ......
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~-----~~~~~~  291 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----YNTLAVFAVTADGHLTLIQQISTEG-----DFPRDF  291 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----TTEEEEEEECGGGCEEEEEEEECSS-----SCCCEE
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----CCEEEEEEECCCCcEEEeEEEecCC-----CCcCeE
Confidence            66544322222221   112222333  33 46666432     23577888753 3555544333210     111223


Q ss_pred             EEEcCceEEEEEccCCCCcCceEEEE--ECCCC
Q 010551          303 AIIEGEHHLVAFGGYNGKYNNEVFVM--RLKPR  333 (507)
Q Consensus       303 ~~~~~~~~l~v~GG~~~~~~~~~~~~--~~~~~  333 (507)
                      +..+++.+|++.+..+    +.+.+|  |..+.
T Consensus       292 ~~spdg~~l~v~~~~~----~~v~v~~~d~~tg  320 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQNT----DNATLYARDLTSG  320 (347)
T ss_dssp             EECTTSSEEEEEETTT----TEEEEEEECTTTC
T ss_pred             EECCCCCEEEEEEcCC----CcEEEEEEeCCCC
Confidence            3344455677654422    334445  55444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.07  E-value=0.21  Score=47.20  Aligned_cols=239  Identities=11%  Similarity=-0.037  Sum_probs=122.0

Q ss_pred             CCEEEEEcCCCC-CccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCC
Q 010551           37 DQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKS  113 (507)
Q Consensus        37 ~~~iyi~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~  113 (507)
                      ++.||+...... ......++++|+.++.-...-...                 .. -++++..  ++.+|+.++..   
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------~~-~~~~~~s~dg~~l~v~~~~~---  110 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-----------------LK-PFGATINNTTQTLWFGNTVN---  110 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-----------------SC-CCSEEEETTTTEEEEEETTT---
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-----------------CC-cceEEECCCCCEEEEEecCC---
Confidence            457777653211 112457999999887654332221                 11 1223332  45677776532   


Q ss_pred             CCcceEEEEECCCCcEEEeecCCCCCCC-----CcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEecc-
Q 010551          114 SDSMIVRFIDLETNLCGVMETSGKVPVT-----RGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV-  185 (507)
Q Consensus       114 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~-----r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~-  185 (507)
                         ..+++||+.+++-......+....+     ..-+.++..  ++.+|+.+...     .+.+++||+.+.+-...-. 
T Consensus       111 ---~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          111 ---SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             ---TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECC
T ss_pred             ---CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecC
Confidence               3699999999875433322111110     001222332  34677665222     2459999998876443322 


Q ss_pred             CCCCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEecc
Q 010551          186 TQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGG  262 (507)
Q Consensus       186 ~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~  262 (507)
                      .+     ...+.++.. +++.+|+...      .+.+++||+.+++-......+..........++..  ++.+|+....
T Consensus       183 ~~-----~~~~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          183 TG-----KMSTGLALDSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             CC-----TTCCCCEEETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             CC-----CccceEEECCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence            11     112233333 4455666543      24789999988765432211111111112223333  3456665432


Q ss_pred             CCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          263 DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       263 ~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                           .+.+++||+.+.........+..         ......+.+..+|+.+..    .+.+.++|+...
T Consensus       252 -----~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~  304 (353)
T 3vgz_A          252 -----AAEVLVVDTRNGNILAKVAAPES---------LAVLFNPARNEAYVTHRQ----AGKVSVIDAKSY  304 (353)
T ss_dssp             -----SSEEEEEETTTCCEEEEEECSSC---------CCEEEETTTTEEEEEETT----TTEEEEEETTTT
T ss_pred             -----CCEEEEEECCCCcEEEEEEcCCC---------ceEEECCCCCEEEEEECC----CCeEEEEECCCC
Confidence                 24689999988765443332211         123344445567776542    357888888654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.01  E-value=0.31  Score=48.11  Aligned_cols=226  Identities=16%  Similarity=0.166  Sum_probs=114.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      .+.+++.|+.+     ..+.++|+.++.-...-...                  .....++.+++..++.|+.+      
T Consensus       168 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~l~s~s~d------  218 (445)
T 2ovr_B          168 RDNIIISGSTD-----RTLKVWNAETGECIHTLYGH------------------TSTVRCMHLHEKRVVSGSRD------  218 (445)
T ss_dssp             ETTEEEEEETT-----SCEEEEETTTTEEEEEECCC------------------SSCEEEEEEETTEEEEEETT------
T ss_pred             cCCEEEEEeCC-----CeEEEEECCcCcEEEEECCC------------------CCcEEEEEecCCEEEEEeCC------
Confidence            34566666643     45889999877533221110                  11122333345556666543      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~  196 (507)
                      ..+.+||+.++.-.....     .......++.+++..++.|+.++      .+.+||+.+.+-...-.     ......
T Consensus       219 g~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~-----~~~~~v  282 (445)
T 2ovr_B          219 ATLRVWDIETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPETETCLHTLQ-----GHTNRV  282 (445)
T ss_dssp             SEEEEEESSSCCEEEEEE-----CCSSCEEEEEECSSCEEEEETTS------CEEEEEGGGTEEEEEEC-----CCSSCE
T ss_pred             CEEEEEECCCCcEEEEEc-----CCcccEEEEEECCCEEEEEcCCC------EEEEEECCCCcEeEEec-----CCCCce
Confidence            348899998876433221     11122334445777777777653      58899987765332211     111122


Q ss_pred             eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEEC
Q 010551          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  276 (507)
Q Consensus       197 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~  276 (507)
                      ..+.+++. .++.|+.+     +.+.+||+.++.-...- .+    ..........++..++.|+.++     .+.+||+
T Consensus       283 ~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~-~~----~~~~v~~~~~~~~~l~~~~~dg-----~i~vwd~  346 (445)
T 2ovr_B          283 YSLQFDGI-HVVSGSLD-----TSIRVWDVETGNCIHTL-TG----HQSLTSGMELKDNILVSGNADS-----TVKIWDI  346 (445)
T ss_dssp             EEEEECSS-EEEEEETT-----SCEEEEETTTCCEEEEE-CC----CCSCEEEEEEETTEEEEEETTS-----CEEEEET
T ss_pred             EEEEECCC-EEEEEeCC-----CeEEEEECCCCCEEEEE-cC----CcccEEEEEEeCCEEEEEeCCC-----eEEEEEC
Confidence            33344455 56666654     35889999887644321 11    1112223334566677776443     4788998


Q ss_pred             CCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCC
Q 010551          277 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       277 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  334 (507)
                      .+..-...  +....  . .......+..++  .+++.|+.+    ..+.++|+....
T Consensus       347 ~~~~~~~~--~~~~~--~-~~~~v~~~~~~~--~~l~s~~~d----g~v~iwd~~~~~  393 (445)
T 2ovr_B          347 KTGQCLQT--LQGPN--K-HQSAVTCLQFNK--NFVITSSDD----GTVKLWDLKTGE  393 (445)
T ss_dssp             TTCCEEEE--ECSTT--S-CSSCEEEEEECS--SEEEEEETT----SEEEEEETTTCC
T ss_pred             CCCcEEEE--EccCC--C-CCCCEEEEEECC--CEEEEEeCC----CeEEEEECCCCc
Confidence            77653221  11100  0 011122223333  355566644    467788876553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.97  E-value=0.16  Score=53.59  Aligned_cols=129  Identities=16%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCC---ccceeEEEECCEEEE
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPP---MSDHCMVKWGTKLLI  105 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~---r~~~~~~~~~~~lyv  105 (507)
                      .+.++.++.||+...      .+.++.+|..+++  |+.-......           ..+..   ....+.+..++.||+
T Consensus        71 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~~v~v  133 (677)
T 1kb0_A           71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRS-----------TGFKGCCDVVNRGVALWKGKVYV  133 (677)
T ss_dssp             CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGG-----------GGGGSSSCSCCCCCEEETTEEEE
T ss_pred             eCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcc-----------ccccccccCCCCCceEECCEEEE
Confidence            445667999999875      3579999998875  8764432110           00000   112345567888888


Q ss_pred             EeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EE
Q 010551          106 LGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WD  181 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~  181 (507)
                      ...       ...++.+|..|++  |+.-.............+.++.++.+|+-.+.. .......++.||..+++  |+
T Consensus       134 ~~~-------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~-~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          134 GAW-------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA-EYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ECT-------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEE
T ss_pred             EcC-------CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccc-ccCCCCEEEEEECCCCcEEEE
Confidence            643       2359999999886  876431001111112223445677776643322 11234679999998875  87


Q ss_pred             Eec
Q 010551          182 AVE  184 (507)
Q Consensus       182 ~~~  184 (507)
                      .-.
T Consensus       206 ~~~  208 (677)
T 1kb0_A          206 WFS  208 (677)
T ss_dssp             EES
T ss_pred             ecc
Confidence            654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.97  E-value=0.24  Score=46.18  Aligned_cols=230  Identities=13%  Similarity=0.134  Sum_probs=112.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|..++.....-...                  ......+.+  ++.+++.|+.+    
T Consensus        34 ~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~l~s~~~d----   86 (312)
T 4ery_A           34 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISGH------------------KLGISDVAWSSDSNLLVSASDD----   86 (312)
T ss_dssp             TSSEEEEEETT-----SCEEEEETTTCCEEEEECCC------------------SSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEeeCC-----CeEEEEeCCCcccchhhccC------------------CCceEEEEEcCCCCEEEEECCC----
Confidence            45566666643     35888898877654432211                  111222333  45666666643    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                        ..+.+||+.++.-...-. +    ......++.+  ++.+++.|+.++      .+.+||+.+.+-...-..    ..
T Consensus        87 --~~i~vwd~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~----~~  149 (312)
T 4ery_A           87 --KTLKIWDVSSGKCLKTLK-G----HSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTLPA----HS  149 (312)
T ss_dssp             --SEEEEEETTTCCEEEEEE-C----CSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEECC----CS
T ss_pred             --CEEEEEECCCCcEEEEEc-C----CCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEecC----CC
Confidence              348899998876433221 1    1111222333  346667777653      489999987764332110    01


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcce
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~  270 (507)
                      ..-.++....++.+++.|+.+     ..+.+||+.+.+.........    ......+.+  ++..++.|+.++     .
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~-----~  215 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLIDDD----NPPVSFVKFSPNGKYILAATLDN-----T  215 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECCSS----CCCEEEEEECTTSSEEEEEETTT-----E
T ss_pred             CcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeEEeccC----CCceEEEEECCCCCEEEEEcCCC-----e
Confidence            111122223345567777654     358899998776443211011    011122222  456666666433     5


Q ss_pred             EEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          271 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       271 ~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +.+||+.+..-...  +..... .. .........++ ..+++.|+.+    ..+.++|+...
T Consensus       216 i~iwd~~~~~~~~~--~~~~~~-~~-~~~~~~~~~~~-~~~l~sg~~d----g~i~vwd~~~~  269 (312)
T 4ery_A          216 LKLWDYSKGKCLKT--YTGHKN-EK-YCIFANFSVTG-GKWIVSGSED----NLVYIWNLQTK  269 (312)
T ss_dssp             EEEEETTTTEEEEE--ECSSCC-SS-SCCCEEEECSS-SCEEEECCTT----SCEEEEETTTC
T ss_pred             EEEEECCCCcEEEE--EEecCC-ce-EEEEEEEEeCC-CcEEEEECCC----CEEEEEECCCc
Confidence            78899887653322  111110 00 11111222222 3456667755    45777787544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.91  E-value=0.31  Score=46.93  Aligned_cols=205  Identities=7%  Similarity=-0.025  Sum_probs=97.3

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                      ...++++|+.++....+...   + ....+....- ++ .|++... +........++.+|+.+..+..+...  .+ ..
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~---~-~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~--~~-~~  238 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQD---T-AWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEH--AE-GE  238 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEE---S-SCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCC--CT-TE
T ss_pred             cceEEEEECCCCcEEeeccC---C-cccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeecc--CC-Cc
Confidence            45799999999987766521   1 1111112222 23 4554432 22111235799999988877766431  01 11


Q ss_pred             CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCC--------
Q 010551          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN--------  264 (507)
Q Consensus       194 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~--------  264 (507)
                      .........++..+++...........++++|+.++....+..   .+.  .. ....- +++++++.+...        
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEEEEECCC--------
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEEEecCCcceeecccc
Confidence            1111222234333333332222222349999999887766532   111  11 22222 566666644221        


Q ss_pred             ---CCCcceEEEEECCCCcEEEeccCCCCCC---CCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCC
Q 010551          265 ---NNGCQETIVLNMTKLAWSILTSVKGRNP---LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       265 ---~~~~~~~~~~d~~~~~W~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~  336 (507)
                         ......++++|+.+.....+...+....   ..+..........+.+..|+......  ....+|.+++....+.
T Consensus       313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~--~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE--GVPAIYIADVPESYKH  388 (396)
T ss_dssp             --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--SSCEEEEEECCTTCC-
T ss_pred             ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC--CCceEEEEEEcccccc
Confidence               1123579999998887666543322100   00000011112223334554444322  2457999998766544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.11  Score=49.60  Aligned_cols=191  Identities=10%  Similarity=0.068  Sum_probs=97.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--C--CEEEEEeccCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.+||+...++..+......                ......+.+  +  +.+++.|+.+. 
T Consensus        22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~~l~s~~~dg-   79 (379)
T 3jrp_A           22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGH----------------EGPVWRVDWAHPKFGTILASCSYDG-   79 (379)
T ss_dssp             SSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCC----------------SSCEEEEEECCGGGCSEEEEEETTS-
T ss_pred             CCCEEEEEECC-----CcEEEEecCCCcceeeeEecCC----------------CCcEEEEEeCCCCCCCEEEEeccCC-
Confidence            45566666643     3588999887777665543210                112223333  2  56666666532 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--C--CEEEEEcCCCCCCCccCcEEEEECCCCcE-EEeccCC
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQ  187 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~iy~~GG~~~~~~~~n~~~~~d~~t~~W-~~~~~~~  187 (507)
                           .+.+||+.++.|..+...   ........++.+  +  +.+++.|+.+      ..+.+||+.+..- ......+
T Consensus        80 -----~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           80 -----KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             -----CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC
T ss_pred             -----EEEEEEcCCCceeEeeee---cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC
Confidence                 388899999988766532   212222333333  2  5567777654      3588888876532 1111100


Q ss_pred             CCCCCCCCceEEEEc-------------CCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCCCCc-cEEEE
Q 010551          188 TPPAPRYDHSAALHA-------------NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAG-HAGIT  251 (507)
Q Consensus       188 ~~p~~r~~~~~~~~~-------------~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~-~~~~~  251 (507)
                      .   ...-.+++...             ++.+++.|+.++     .+.+||+.+..  +......   ...... .+++.
T Consensus       146 ~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~---~~h~~~v~~~~~  214 (379)
T 3jrp_A          146 H---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAW  214 (379)
T ss_dssp             C---TTCEEEEEECCCC----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEE
T ss_pred             C---CCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEE---ecccCcEeEEEE
Confidence            0   11111222222             345777777543     57788876543  4332111   111111 12222


Q ss_pred             E-C---CeEEEEeccCCCCCcceEEEEECCCC
Q 010551          252 I-D---ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       252 ~-~---~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      . +   +.+++.|+.++     .+.+||+.+.
T Consensus       215 sp~~~~~~~l~s~~~dg-----~i~iwd~~~~  241 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDR-----TCIIWTQDNE  241 (379)
T ss_dssp             CCCCSSSEEEEEEETTS-----CEEEEEESST
T ss_pred             CCCCCCCCeEEEEeCCC-----EEEEEeCCCC
Confidence            2 3   56777777544     3667777665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.90  E-value=0.064  Score=51.86  Aligned_cols=210  Identities=10%  Similarity=-0.023  Sum_probs=94.5

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~  194 (507)
                      ...++++|+.++.-..+...   + ....+....- +++.+++............++.+|+.+.....+...   .....
T Consensus       167 ~~~l~~~d~~~g~~~~l~~~---~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~  239 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVILQE---N-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGES  239 (388)
T ss_dssp             CEEEEEEETTTCCEEEEEEE---S-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEE
T ss_pred             cceEEEEECCCCceEEeecC---C-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcc
Confidence            46799999999986666421   1 1122222222 344333333222222245799999988776665421   10011


Q ss_pred             CceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCC---CCCCccEEEEECCeEEEEec---cCCCCC
Q 010551          195 DHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV---TGRAGHAGITIDENWYIVGG---GDNNNG  267 (507)
Q Consensus       195 ~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p---~~r~~~~~~~~~~~l~v~GG---~~~~~~  267 (507)
                      ....+...+ +.|+..... .......++++|+.++.-..+.......   ......+...-+..+++...   ......
T Consensus       240 ~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  318 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYL-KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN  318 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEE-TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred             cccceECCCCCEEEEEecC-CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence            111222233 334333222 1111124999999998866543211100   00001111222233333210   001123


Q ss_pred             cceEEEEECCCCcEEEeccCCCCCCC---CCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCC
Q 010551          268 CQETIVLNMTKLAWSILTSVKGRNPL---ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       268 ~~~~~~~d~~~~~W~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w  335 (507)
                      ...++++|+.+.....+.........   .+..........+++..|+......  ....+|.+++....|
T Consensus       319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~--g~~~l~~~~l~~~~~  387 (388)
T 3pe7_A          319 DPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH--GKPALYLATLPESVW  387 (388)
T ss_dssp             CCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--SSCEEEEEECCGGGG
T ss_pred             CCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC--CceeEEEEECChhcc
Confidence            45799999999887776544321000   0000111122233444555544333  245799999876544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.88  E-value=0.36  Score=46.90  Aligned_cols=220  Identities=15%  Similarity=0.126  Sum_probs=112.0

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~  130 (507)
                      ..+.+||..++..........                 ......+.+  ++.+++.|+.++      .+.+||+.++.-.
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~-----------------~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~  169 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDE-----------------STYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKL  169 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCT-----------------TCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred             CeEEEeeCCCCcEeEeeecCC-----------------CCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEE
Confidence            469999999887665443211                 111223333  455666666432      3889999888654


Q ss_pred             EeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551          131 VMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  210 (507)
                      ....     .......++..++.+++.|+.+      ..+.++|+.+..-......+   ....-.++....++.+++.|
T Consensus       170 ~~~~-----~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          170 RTMA-----GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             EEEC-----CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEE
T ss_pred             EEec-----CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEE
Confidence            4321     1122233344466677777754      35889998743322111111   11112223333355577777


Q ss_pred             CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~  288 (507)
                      +.+     +.+.+||+.+..-....  ..  ....-.+++..  +..+++.||+..+   ..+.+||+.+..-.......
T Consensus       236 ~~d-----~~v~iwd~~~~~~~~~~--~~--~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~~  303 (401)
T 4aez_A          236 GND-----NVVQIWDARSSIPKFTK--TN--HNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDAG  303 (401)
T ss_dssp             ETT-----SCEEEEETTCSSEEEEE--CC--CSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEECS
T ss_pred             eCC-----CeEEEccCCCCCccEEe--cC--CcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeCC
Confidence            754     36889999876543321  01  11111233332  3467777753222   25889998876543322111


Q ss_pred             CCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          289 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                              ....+....+....|++.+|..   ...+.++++..
T Consensus       304 --------~~v~~~~~s~~~~~l~~~~g~~---dg~i~v~~~~~  336 (401)
T 4aez_A          304 --------SQVTSLIWSPHSKEIMSTHGFP---DNNLSIWSYSS  336 (401)
T ss_dssp             --------SCEEEEEECSSSSEEEEEECTT---TCEEEEEEEET
T ss_pred             --------CcEEEEEECCCCCeEEEEeecC---CCcEEEEecCC
Confidence                    1122233334455666665543   24566666644

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.88  E-value=0.024  Score=48.22  Aligned_cols=60  Identities=13%  Similarity=0.189  Sum_probs=33.5

Q ss_pred             HHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551          430 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       430 ~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      ++++...+...+.++.++.+||+..-.++++.+...    +++.+..++..+..-++.++++..
T Consensus        94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe  157 (189)
T 2v71_A           94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE  157 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555555555555555554443    566666666666667777766544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.85  E-value=0.11  Score=49.06  Aligned_cols=160  Identities=16%  Similarity=0.085  Sum_probs=78.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+|+.++.     .+.++++|+.++.....-..+..                ..-+.++..  ++.+|+.+..     
T Consensus        10 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~s~dg~~~~v~~~~-----   63 (349)
T 1jmx_B           10 GHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPDK----------------FGPGTAMMAPDNRTAYVLNNH-----   63 (349)
T ss_dssp             TCEEEEEEET-----TTEEEEEETTTTEEEEEEECSSC----------------CSSCEEEECTTSSEEEEEETT-----
T ss_pred             CCEEEEEeCC-----CCeEEEEECCCCcEEEEEecCCC----------------CCCceeEECCCCCEEEEEeCC-----
Confidence            5678887763     35699999998865443222110                011222222  3457777532     


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCC--CCcCcEEEEE-CC-EEEEEcCC--CCCCC---ccCcEEEEECCCCcEEEecc
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPV--TRGGHSVTLV-GS-RLIIFGGE--DRSRK---LLNDVHFLDLETMTWDAVEV  185 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~--~r~~~~~~~~-~~-~iy~~GG~--~~~~~---~~n~~~~~d~~t~~W~~~~~  185 (507)
                       ...+++||+.+++-......+..|.  ...-+.++.. ++ .+|+.+..  .....   ..+.+++||+.+++-.....
T Consensus        64 -~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           64 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence             3459999999987654332211110  1111222222 34 55554321  00000   12579999988743211110


Q ss_pred             CCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       186 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      .  .+.++...+++...++.+|+.++        +++++|+.+++...
T Consensus       143 ~--~~~~~~~~~~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          143 T--FPMPRQVYLMRAADDGSLYVAGP--------DIYKMDVKTGKYTV  180 (349)
T ss_dssp             E--EECCSSCCCEEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred             e--ccCCCcccceeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence            0  11122333444444555776432        48899988776543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=96.84  E-value=0.088  Score=56.06  Aligned_cols=147  Identities=10%  Similarity=-0.021  Sum_probs=69.4

Q ss_pred             cEEEEECCC-CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCC-CCCCc
Q 010551          169 DVHFLDLET-MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV-TGRAG  246 (507)
Q Consensus       169 ~~~~~d~~t-~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~  246 (507)
                      .++++|+.+ .+-..+...  .........++. .++..++++..+......+++++|+.++....+....... .....
T Consensus       264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             EEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence            688889888 776555321  011111122233 3433444443322233457999999998876643211100 00011


Q ss_pred             cEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEE-EEcCceEEEEEccCCCCcCceE
Q 010551          247 HAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEV  325 (507)
Q Consensus       247 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~~  325 (507)
                      .....-++++++.++.+   ....+|.+|.... ...+....        ....... ..+++..|+..+..++.....+
T Consensus       341 ~~~~spdg~~~~~~~~~---g~~~l~~~~~~~~-~~~l~~~~--------~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l  408 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERT---GFQHLYRIDSKGK-AAALTHGN--------WSVDELLAVDEKAGLAYFRAGIESARESQI  408 (741)
T ss_dssp             CCEECTTSCEEEEECTT---SSCEEEEECSSSC-EEESCCSS--------SCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred             ceEECCCCeEEEEecCC---CccEEEEEcCCCC-eeeeeecc--------eEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence            11122255665555432   3467899987766 55553221        1111121 3333445555554333334456


Q ss_pred             EEEEC
Q 010551          326 FVMRL  330 (507)
Q Consensus       326 ~~~~~  330 (507)
                      |.++.
T Consensus       409 ~~~~~  413 (741)
T 2ecf_A          409 YAVPL  413 (741)
T ss_dssp             EEEET
T ss_pred             EEEEc
Confidence            66665

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.84  E-value=0.31  Score=45.44  Aligned_cols=187  Identities=16%  Similarity=0.068  Sum_probs=94.5

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++..++.|+.+      ..+.+||+.++.......   .........++.+  ++..++.|+.+      +.+.+||+.+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCC
Confidence            45566666543      358999999887544331   1111112223333  45666667654      3589999988


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  256 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  256 (507)
                      .+....-.    .......+++...++..++.|+.+     ..+.+||+.+..-.....     .+....+++.. ++..
T Consensus       173 ~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~-----~~~~v~~~~~s~~~~~  238 (337)
T 1gxr_A          173 QTLVRQFQ----GHTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHD-----FTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             TEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE-----CSSCEEEEEECTTSSE
T ss_pred             Cceeeeee----cccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeeec-----CCCceEEEEECCCCCE
Confidence            76443321    011112223333344466666643     368999998876443211     11111222222 4566


Q ss_pred             EEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +++|+.++     .+.+||+.+..-..+....        . ....+....+..+++.|+.+    ..+.++++...
T Consensus       239 l~~~~~~~-----~i~~~~~~~~~~~~~~~~~--------~-~v~~~~~~~~~~~l~~~~~d----g~i~~~~~~~~  297 (337)
T 1gxr_A          239 LAVGMESS-----NVEVLHVNKPDKYQLHLHE--------S-CVLSLKFAYCGKWFVSTGKD----NLLNAWRTPYG  297 (337)
T ss_dssp             EEEEETTS-----CEEEEETTSSCEEEECCCS--------S-CEEEEEECTTSSEEEEEETT----SEEEEEETTTC
T ss_pred             EEEEcCCC-----cEEEEECCCCCeEEEcCCc--------c-ceeEEEECCCCCEEEEecCC----CcEEEEECCCC
Confidence            77766433     4788998877644332211        1 12223333333345556644    45777887654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.077  Score=50.77  Aligned_cols=233  Identities=12%  Similarity=0.112  Sum_probs=112.8

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--C--CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCC
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--D--QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDAD   77 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~--~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~   77 (507)
                      |..+.++|+....+..+..   .......-.++..  +  +.+++.|+.+     ..+.++|+.++.|..+......   
T Consensus        32 dg~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~---  100 (379)
T 3jrp_A           32 DKTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVH---  100 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCC---
T ss_pred             CCcEEEEecCCCcceeeeE---ecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCceeEeeeecCC---
Confidence            3445666666555555442   1111111122222  2  5666777643     3589999999988766544311   


Q ss_pred             ccccCCCcCCCCCccceeEEEE--C--CEEEEEeccCCCCCCcceEEEEECCCCcE-EEeecCCCCCCCCcCcEEEEE--
Q 010551           78 KTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKKSSDSMIVRFIDLETNLC-GVMETSGKVPVTRGGHSVTLV--  150 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~--  150 (507)
                                   ......+.+  +  +.+++.|+.+      ..+.+||+.+..- ......+    ......++.+  
T Consensus       101 -------------~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~----~~~~v~~~~~~~  157 (379)
T 3jrp_A          101 -------------SASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA----HAIGVNSASWAP  157 (379)
T ss_dssp             -------------SSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC----CTTCEEEEEECC
T ss_pred             -------------CcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC----CCCceEEEEEcC
Confidence                         112223333  2  4566666643      2488888877632 1111100    0111112222  


Q ss_pred             -------------CCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcC---CEEEEEcCC
Q 010551          151 -------------GSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHAN---RYLIVFGGC  212 (507)
Q Consensus       151 -------------~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~---~~l~v~GG~  212 (507)
                                   ++.+++.|+.++      .+.+||+.+..  +..+.....  ....-.+++...+   +.+++.|+.
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             CC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             ccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeC
Confidence                         356777777653      47888875543  444332110  1111223333344   567777776


Q ss_pred             CCCCCCCcEEEEECCCCc--EEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECC-CCcEEEeccC
Q 010551          213 SHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSV  287 (507)
Q Consensus       213 ~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~-~~~W~~v~~~  287 (507)
                      ++     .+.+||+.+..  +.... .........-.+++.. ++.++++|+.++     .+.+||+. ...|..+..+
T Consensus       230 dg-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~  297 (379)
T 3jrp_A          230 DR-----TCIIWTQDNEQGPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDN-----KVTLWKENLEGKWEPAGEV  297 (379)
T ss_dssp             TS-----CEEEEEESSTTSCCEEEE-SSSSCCSSCEEEEEECSSSCCEEEEESSS-----SEEEEEEEETTEEEEEEEE
T ss_pred             CC-----EEEEEeCCCCCccceeee-eccccCCCcEEEEEEcCCCCEEEEecCCC-----cEEEEeCCCCCccccccce
Confidence            53     57888887653  11110 0111111111122222 456666666433     36677766 4578776544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.80  E-value=0.12  Score=47.11  Aligned_cols=229  Identities=10%  Similarity=0.005  Sum_probs=112.6

Q ss_pred             CCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCC-CcEE
Q 010551           52 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET-NLCG  130 (507)
Q Consensus        52 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~  130 (507)
                      ...++++|+.++....+....                 .........-+++.+++++       ...++++|+.+ +...
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~l~~~~-------~~~i~~~d~~~~~~~~   76 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTP-----------------ELFEAPNWSPDGKYLLLNS-------EGLLYRLSLAGDPSPE   76 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEES-----------------SCCEEEEECTTSSEEEEEE-------TTEEEEEESSSCCSCE
T ss_pred             ceeEEEEeCCCCceeeeccCC-----------------cceEeeEECCCCCEEEEEc-------CCeEEEEeCCCCCCce
Confidence            467999999988876554321                 1111111222455555554       12599999999 8766


Q ss_pred             EeecCCCCCC-CCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEc-CCEEEE
Q 010551          131 VMETSGKVPV-TRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIV  208 (507)
Q Consensus       131 ~~~~~g~~p~-~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v  208 (507)
                      .+..   .+. ......+..-+++.+++++....  ....++.+++.+..-..+....    .  ...+.... ++.+++
T Consensus        77 ~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~----~--~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           77 KVDT---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNL----P--SYWHGWSPDGKSFTY  145 (297)
T ss_dssp             ECCC---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSS----S--EEEEEECTTSSEEEE
T ss_pred             Eecc---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCC----C--ccceEECCCCCEEEE
Confidence            5541   121 11111122224555555553322  2467999998877755553211    1  22223333 344554


Q ss_pred             EcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccC
Q 010551          209 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       209 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~  287 (507)
                      .++.++.   ..+|.+++.+.....+..   .+  .....+... ++..+++++..  .....+|.+++.......+...
T Consensus       146 ~~~~~~~---~~l~~~~~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~  215 (297)
T 2ojh_A          146 CGIRDQV---FDIYSMDIDSGVETRLTH---GE--GRNDGPDYSPDGRWIYFNSSR--TGQMQIWRVRVDGSSVERITDS  215 (297)
T ss_dssp             EEEETTE---EEEEEEETTTCCEEECCC---SS--SCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTSSCEEECCCC
T ss_pred             EECCCCc---eEEEEEECCCCcceEccc---CC--CccccceECCCCCEEEEEecC--CCCccEEEECCCCCCcEEEecC
Confidence            4443221   367888887777665421   11  111122222 44444444321  1245788888877776665432


Q ss_pred             CCCCCCCCCCCceEEEEE-cCceEEEEEccCCCC------cCceEEEEECCCCC
Q 010551          288 KGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGK------YNNEVFVMRLKPRD  334 (507)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~-~~~~~l~v~GG~~~~------~~~~~~~~~~~~~~  334 (507)
                      .         .....+.. +.+..|++.+...+.      ....++++|+....
T Consensus       216 ~---------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          216 A---------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             S---------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             C---------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence            1         11222233 334444443332111      23568999987653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.76  E-value=0.096  Score=51.54  Aligned_cols=260  Identities=13%  Similarity=0.097  Sum_probs=119.5

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~   79 (507)
                      |.-++++|..+++-..+-.   .......-.++..  ++.+++.|+.+     ..+.++|+.++.-.......       
T Consensus       124 d~tV~lWd~~tg~~~~~~~---~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~~~~h-------  188 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTSH-------  188 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCC-------
T ss_pred             CCEEEEEECCCCCEEEEEE---ecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEEEeCC-------
Confidence            5567788888887766542   1111111112222  56677777644     35889999876543222111       


Q ss_pred             ccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEE
Q 010551           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~  157 (507)
                                 .....++..++.+++.|+.+      ..+..+|..+.........+.    .........  ++..++.
T Consensus       189 -----------~~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h----~~~~~~~~~~~~g~~l~s  247 (420)
T 4gga_A          189 -----------SARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRHLAS  247 (420)
T ss_dssp             -----------SSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECC----SSCEEEEEECTTSSEEEE
T ss_pred             -----------CCceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEeccc----ccceeeeeecCCCCeeee
Confidence                       12233445566677777653      247777776654333221111    111122222  3455566


Q ss_pred             cCCCCCCCccCcEEEEECCCCcE--EEeccCCCCCCCCCCceEEEE---cCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          158 GGEDRSRKLLNDVHFLDLETMTW--DAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t~~W--~~~~~~~~~p~~r~~~~~~~~---~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      |+.+      +.+.++|..+..-  ..+...   ........+...   ..+.+++.||..+    ..|.+||+.++.-.
T Consensus       248 ~~~D------~~v~i~~~~~~~~~~~~~~~~---~~~~~~V~~~~~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~  314 (420)
T 4gga_A          248 GGND------NLVNVWPSAPGEGGWVPLQTF---TQHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACL  314 (420)
T ss_dssp             EETT------SCEEEEESSCCSSCSCCSEEE---CCCSSCEEEEEECTTCTTEEEEEECTTT----CEEEEEETTTTEEE
T ss_pred             eecc------ccceEEeeccccccceeeeee---cccCCceeeeeeCCCcccEEEEEeecCC----CEEEEEeCCccccc
Confidence            6654      3477777765431  111100   001111111111   2343444445432    25888999887655


Q ss_pred             ecccCCCCCCCCCccEEEEE-C-CeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceE
Q 010551          233 QPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH  310 (507)
Q Consensus       233 ~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (507)
                      ......     ....+++.. + +.+++.+|...    ..+.+||..+..  .+..+.+..     +...+ +.+..+..
T Consensus       315 ~~~~~~-----~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~--~v~~l~gH~-----~~V~~-l~~spdg~  377 (420)
T 4gga_A          315 SAVDAH-----SQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMA--KVAELKGHT-----SRVLS-LTMSPDGA  377 (420)
T ss_dssp             EEEECS-----SCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCC--EEEEECCCS-----SCEEE-EEECTTSS
T ss_pred             eeeccc-----cceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCc--EEEEEcCCC-----CCEEE-EEEcCCCC
Confidence            432111     111122222 3 34544445322    247888887654  333332211     11222 23333334


Q ss_pred             EEEEccCCCCcCceEEEEECC
Q 010551          311 LVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       311 l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      +++.||.++    .+.++|+.
T Consensus       378 ~l~S~s~D~----tvriWdv~  394 (420)
T 4gga_A          378 TVASAAADE----TLRLWRCF  394 (420)
T ss_dssp             CEEEEETTT----EEEEECCS
T ss_pred             EEEEEecCC----eEEEEECC
Confidence            556677553    45555553

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.74  E-value=0.22  Score=47.40  Aligned_cols=150  Identities=11%  Similarity=0.091  Sum_probs=77.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.+++.|+.+     ..+.+||+.++.+..+......               ...-.+++.. ++.+++.|+.+     
T Consensus        19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~~~~~d-----   73 (372)
T 1k8k_C           19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEH---------------NGQVTGVDWAPDSNRIVTCGTD-----   73 (372)
T ss_dssp             TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECC---------------SSCEEEEEEETTTTEEEEEETT-----
T ss_pred             CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCC---------------CCcccEEEEeCCCCEEEEEcCC-----
Confidence            55666777643     4699999999877665543211               0111122222 45566666643     


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCc-EEEeccCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~-W~~~~~~~~~p~~  192 (507)
                       ..+.+||+.++.+......   ........++.+  ++..++.|+.+      +.+.+||+.+.. |...... ..+..
T Consensus        74 -g~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~-~~~~~  142 (372)
T 1k8k_C           74 -RNAYVWTLKGRTWKPTLVI---LRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHI-KKPIR  142 (372)
T ss_dssp             -SCEEEEEEETTEEEEEEEC---CCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEE-CTTCC
T ss_pred             -CeEEEEECCCCeeeeeEEe---ecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeee-ecccC
Confidence             2388899988887655421   111222233333  45666677654      247777765543 3322211 01111


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~  227 (507)
                      ..-.+++...++.+++.|+.+     ..+.+||+.
T Consensus       143 ~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~  172 (372)
T 1k8k_C          143 STVLSLDWHPNSVLLAAGSCD-----FKCRIFSAY  172 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEECC
T ss_pred             CCeeEEEEcCCCCEEEEEcCC-----CCEEEEEcc
Confidence            122233333455567777654     357888864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.73  E-value=0.43  Score=45.51  Aligned_cols=114  Identities=7%  Similarity=-0.003  Sum_probs=53.5

Q ss_pred             CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CC-eEEEEeccCCCCCcceEEEEEC--C
Q 010551          203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNM--T  277 (507)
Q Consensus       203 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~d~--~  277 (507)
                      ++.+|+.+..     .+.+.+||+.++.+..+......+........+.+  ++ .+|+.....    .+.+.+|++  .
T Consensus       222 g~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v~~~~~~  292 (361)
T 3scy_A          222 GKFAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAIFKVDET  292 (361)
T ss_dssp             SSEEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEEEEECTT
T ss_pred             CCEEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEEEEEcCC
Confidence            3457765532     24688999888877554332222222222233333  34 455543220    124556555  5


Q ss_pred             CCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          278 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       278 ~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      +..++.+...+..      ..-......+.+.+|++.+..++  .-.+|.+|+.+.
T Consensus       293 ~g~~~~~~~~~~g------~~~~~~~~spdg~~l~~~~~~~~--~v~v~~~d~~~g  340 (361)
T 3scy_A          293 NGTLTKVGYQLTG------IHPRNFIITPNGKYLLVACRDTN--VIQIFERDQATG  340 (361)
T ss_dssp             TCCEEEEEEEECS------SCCCEEEECTTSCEEEEEETTTT--EEEEEEECTTTC
T ss_pred             CCcEEEeeEecCC------CCCceEEECCCCCEEEEEECCCC--CEEEEEEECCCC
Confidence            6676665544321      11122333444556766543221  223455665544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.72  E-value=0.23  Score=52.75  Aligned_cols=253  Identities=10%  Similarity=0.025  Sum_probs=125.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCC--
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKK--  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~--  112 (507)
                      +++.++++....+.....++++|+.++.........                 ..  .+.+.+  +++.++++.....  
T Consensus       135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-----------------~~--~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-----------------VK--FSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-----------------EC--SCCEEECTTSSEEEEEECCCCSS
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-----------------cc--cceEEEEeCCCEEEEEEECCccc
Confidence            555555543333333347999999999876643211                 01  122222  4443333333221  


Q ss_pred             --------CCCcceEEEEECCCCcEE-EeecCCCCCCCCcCcEEEE-ECC-EEEEEcCCCCCCCccCcEEEEECCC----
Q 010551          113 --------SSDSMIVRFIDLETNLCG-VMETSGKVPVTRGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLET----  177 (507)
Q Consensus       113 --------~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~-~~~-~iy~~GG~~~~~~~~n~~~~~d~~t----  177 (507)
                              ......++++++.++.-. .+...+. ..+........ -++ .|++.......  ..++++.+|+.+    
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-DEPKWMGGAELSDDGRYVLLSIREGCD--PVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEEEECSSS--SCCEEEEEEGGGSSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccC-CCCeEEEEEEEcCCCCEEEEEEEccCC--CccEEEEEECcccccc
Confidence                    012456999999887643 1111111 11111122222 234 45544332211  256899999876    


Q ss_pred             --C--cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC---cEEecccCCCCCCCCCccEEE
Q 010551          178 --M--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGI  250 (507)
Q Consensus       178 --~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~  250 (507)
                        .  .+..+....     .........+++.||+.+..+  .....|+.+|+.+.   .|..+..  ..+. .....+.
T Consensus       273 ~~~~~~~~~l~~~~-----~~~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~~-~~~~~~~  342 (710)
T 2xdw_A          273 ITGILKWVKLIDNF-----EGEYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVP--EHEK-DVLEWVA  342 (710)
T ss_dssp             SCSSCCCEEEECSS-----SSCEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEEC--CCSS-CEEEEEE
T ss_pred             cCCccceEEeeCCC-----CcEEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccC--CCCC-CeEEEEE
Confidence              4  577775321     111223444567788776543  22357999999876   4777632  1111 1122334


Q ss_pred             EE-CCeEEEEeccCCCCCcceEEEEECCCCc-EEEeccCCCCCCCCCCCCceEEEEEcCceEE-EEEccCCCCcCceEEE
Q 010551          251 TI-DENWYIVGGGDNNNGCQETIVLNMTKLA-WSILTSVKGRNPLASEGLSVCSAIIEGEHHL-VAFGGYNGKYNNEVFV  327 (507)
Q Consensus       251 ~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~-W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l-~v~GG~~~~~~~~~~~  327 (507)
                      .. ++.+++....+   ....++++|+.++. ...+...        .+........+....+ +.+.+  ......+|.
T Consensus       343 ~~~~~~lv~~~~~~---g~~~l~~~~~~~g~~~~~l~~~--------~~~v~~~~~s~d~~~l~~~~ss--~~~P~~i~~  409 (710)
T 2xdw_A          343 CVRSNFLVLCYLHD---VKNTLQLHDLATGALLKIFPLE--------VGSVVGYSGQKKDTEIFYQFTS--FLSPGIIYH  409 (710)
T ss_dssp             EETTTEEEEEEEET---TEEEEEEEETTTCCEEEEECCC--------SSEEEEEECCTTCSEEEEEEEC--SSCCCEEEE
T ss_pred             EEcCCEEEEEEEEC---CEEEEEEEECCCCCEEEecCCC--------CceEEEEecCCCCCEEEEEEeC--CCCCCEEEE
Confidence            44 56666665432   24568999985554 4444321        1222222122222333 33333  344678999


Q ss_pred             EECCCCC
Q 010551          328 MRLKPRD  334 (507)
Q Consensus       328 ~~~~~~~  334 (507)
                      +|+.+..
T Consensus       410 ~d~~tg~  416 (710)
T 2xdw_A          410 CDLTKEE  416 (710)
T ss_dssp             EETTSSS
T ss_pred             EECCCCc
Confidence            9987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.71  E-value=0.55  Score=46.46  Aligned_cols=146  Identities=11%  Similarity=0.123  Sum_probs=75.8

Q ss_pred             ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       150 ~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      .++.+++.|+.++      .+.+||+.+.+-...-.    .....-.+++...++..++.|+.+     +.+.+||+.++
T Consensus       278 ~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~  342 (464)
T 3v7d_B          278 GHGNIVVSGSYDN------TLIVWDVAQMKCLYILS----GHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENG  342 (464)
T ss_dssp             EETTEEEEEETTS------CEEEEETTTTEEEEEEC----CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTT
T ss_pred             CCCCEEEEEeCCC------eEEEEECCCCcEEEEec----CCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Confidence            3455566666543      58999998766433221    111112233334444466666654     35899999887


Q ss_pred             cEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010551          230 EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  309 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~  309 (507)
                      .-...-     .........+..++..++.|+.++     .+.++|+.+..-.......        .........+.+ 
T Consensus       343 ~~~~~~-----~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~-  403 (464)
T 3v7d_B          343 ELMYTL-----QGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHHT--------NLSAITTFYVSD-  403 (464)
T ss_dssp             EEEEEE-----CCCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEECT--------TCCCEEEEEECS-
T ss_pred             cEEEEE-----eCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecCC--------CCccEEEEEeCC-
Confidence            644321     111222234445677777776543     4778898876522211111        111222223333 


Q ss_pred             EEEEEccCCCCcCceEEEEECCCCC
Q 010551          310 HLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       310 ~l~v~GG~~~~~~~~~~~~~~~~~~  334 (507)
                      .+++.|+ +    ..+.++|+....
T Consensus       404 ~~l~~~~-d----g~i~iwd~~~g~  423 (464)
T 3v7d_B          404 NILVSGS-E----NQFNIYNLRSGK  423 (464)
T ss_dssp             SEEEEEE-T----TEEEEEETTTCC
T ss_pred             CEEEEec-C----CeEEEEECCCCc
Confidence            3555565 2    468888887654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.70  E-value=0.37  Score=49.63  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=73.3

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEc-cCCc--eeeeccccccCCCccccCCCcCCCCC---ccceeEEEECCEEE
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSLA--WSNLRLETELDADKTEDSGLLEVLPP---MSDHCMVKWGTKLL  104 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~-~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~---r~~~~~~~~~~~ly  104 (507)
                      .+.++.++.||+....     ...++.||. .+++  |+.-......           ..+..   ....+.+..++.||
T Consensus        56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~  119 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAS-----------TKAVMCCDVVDRGLAYGAGQIV  119 (571)
T ss_dssp             SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG-----------GGGGCTTCSCCCCCEEETTEEE
T ss_pred             cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCcc-----------ccccccccccccccEEECCEEE
Confidence            4456679999998752     246999999 7764  8764322100           00000   11224556788888


Q ss_pred             EEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCC-CcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--
Q 010551          105 ILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVT-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--  179 (507)
Q Consensus       105 v~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--  179 (507)
                      +...       ...++.+|..|++  |+.-..  ..+.. ....+.++.++.+|+-.+... ......++.||+.+++  
T Consensus       120 v~~~-------dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          120 KKQA-------NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EECT-------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEE
T ss_pred             EEeC-------CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEE
Confidence            8743       2359999999885  875431  11111 112233456888776443211 1123569999998775  


Q ss_pred             EEEec
Q 010551          180 WDAVE  184 (507)
Q Consensus       180 W~~~~  184 (507)
                      |+.-.
T Consensus       190 W~~~~  194 (571)
T 2ad6_A          190 WRAFA  194 (571)
T ss_dssp             EEEES
T ss_pred             EEEcc
Confidence            87553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.68  E-value=0.38  Score=44.14  Aligned_cols=256  Identities=8%  Similarity=-0.042  Sum_probs=127.5

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .++.||+. ..+...+...   .....+++++- ++.||+....     ...++.||+. +.........          
T Consensus        37 ~v~~~d~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~~~~----------   96 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPT---PDAKVMCLTISSDGEVWFTENA-----ANKIGRITKK-GIIKEYTLPN----------   96 (299)
T ss_dssp             EEEEECTT-CCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSS----------
T ss_pred             cEEEEcCC-CCeEEecCCc---ccCceeeEEECCCCCEEEeCCC-----CCeEEEECCC-CcEEEEeCCC----------
Confidence            46778888 7777665311   11223334332 5678877532     2358889886 4554433210          


Q ss_pred             CCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCC
Q 010551           83 GLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGE  160 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~  160 (507)
                            ....-++++.. ++.||+....      ...+++||+ ++.........   ....-..++.- ++.+|+....
T Consensus        97 ------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           97 ------PDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             ------TTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEETT
T ss_pred             ------cCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeCC
Confidence                  01122333333 5678876532      235899998 77766554211   11111222222 4577775421


Q ss_pred             CCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCC
Q 010551          161 DRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  240 (507)
Q Consensus       161 ~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  240 (507)
                            .+.+++||+ +++.........   ...-.+++...++.+|+....     .+.+++||+ ++.+.......  
T Consensus       161 ------~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~--  222 (299)
T 2z2n_A          161 ------NNAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKIPT--  222 (299)
T ss_dssp             ------TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECSS--
T ss_pred             ------CCEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEECCC--
Confidence                  346999999 777766532111   111223344345557775432     246899999 77766532111  


Q ss_pred             CCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC
Q 010551          241 VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       241 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                      + ....++++.. ++++|+....     .+.+++||+ +.....+.. +..     ...-.+.+.  .+..|++...   
T Consensus       223 ~-~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~-~~~-----~~~~~~i~~--~~g~l~v~~~---  284 (299)
T 2z2n_A          223 P-NARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPI-QIK-----SAEPHGICF--DGETIWFAME---  284 (299)
T ss_dssp             T-TCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEEEC-SSS-----SCCEEEEEE--CSSCEEEEET---
T ss_pred             C-CCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEEeC-CCC-----CCccceEEe--cCCCEEEEec---
Confidence            1 1112233333 4577776421     235889998 445444421 111     011222223  3345666432   


Q ss_pred             CcCceEEEEECCCC
Q 010551          320 KYNNEVFVMRLKPR  333 (507)
Q Consensus       320 ~~~~~~~~~~~~~~  333 (507)
                        .+.+.+|++...
T Consensus       285 --~~~l~~~~~~~~  296 (299)
T 2z2n_A          285 --CDKIGKLTLIKD  296 (299)
T ss_dssp             --TTEEEEEEEC--
T ss_pred             --CCcEEEEEcCcc
Confidence              256788887544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.66  E-value=0.43  Score=50.20  Aligned_cols=132  Identities=16%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEe
Q 010551           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        30 ~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~G  107 (507)
                      ..+-++.++.||+...      ...++.+|..+++  |+.-......     ..   ..........+.++.++.||+..
T Consensus        59 ~~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~v~v~~  124 (668)
T 1kv9_A           59 EATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKV-----KA---RTSCCDAVNRGVALWGDKVYVGT  124 (668)
T ss_dssp             CCCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGG-----GG---GGCTTCSCCCCCEEEBTEEEEEC
T ss_pred             ccCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCcc-----cc---ccccccCCccceEEECCEEEEEc
Confidence            3445667999999864      3469999998875  8764322110     00   00000011233456788888764


Q ss_pred             ccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEe
Q 010551          108 GHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  183 (507)
Q Consensus       108 G~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~  183 (507)
                      .       ...++.+|..|++  |+..... .........+.++.++.+|+-.+ +........++.||+.+++  |+.-
T Consensus       125 ~-------dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~-~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          125 L-------DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNG-GAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             T-------TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCB-CTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             C-------CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCC-CCCcCCCCEEEEEECCCCcEEEEec
Confidence            2       2359999999886  8765311 11111222234556788776332 2111234579999998875  8765


Q ss_pred             c
Q 010551          184 E  184 (507)
Q Consensus       184 ~  184 (507)
                      .
T Consensus       196 ~  196 (668)
T 1kv9_A          196 T  196 (668)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.65  E-value=0.18  Score=47.89  Aligned_cols=148  Identities=11%  Similarity=0.035  Sum_probs=73.1

Q ss_pred             ceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEee
Q 010551           54 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME  133 (507)
Q Consensus        54 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~  133 (507)
                      .++.+|..++.+..+......               ......+..-+++||+.+....    ...+++||+.++.++.+.
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~---------------~~p~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~   79 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAAT---------------QNPTYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKLN   79 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC---------------SCCCCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeecc---------------CCcceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEee
Confidence            367778888888765433211               1111122222667777654211    346999999888877665


Q ss_pred             cCCCCCCCCcCcEEEE-ECC-EEEEEcCCCCCCCccCcEEEEECC-CCcEEEec---cCCCCCCCCC----CceEEEEcC
Q 010551          134 TSGKVPVTRGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVE---VTQTPPAPRY----DHSAALHAN  203 (507)
Q Consensus       134 ~~g~~p~~r~~~~~~~-~~~-~iy~~GG~~~~~~~~n~~~~~d~~-t~~W~~~~---~~~~~p~~r~----~~~~~~~~~  203 (507)
                      ..  ......-..++. -++ .||+.+..      .+.+.+||+. +.....+.   ..+..|.+|.    .+.++...+
T Consensus        80 ~~--~~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd  151 (347)
T 3hfq_A           80 TV--VAPGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD  151 (347)
T ss_dssp             EE--EEESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred             ee--ecCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence            31  001111112222 234 56665432      2357888874 33333332   2222222221    223344445


Q ss_pred             CEEEEEcCCCCCCCCCcEEEEECC-CCcEEe
Q 010551          204 RYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQ  233 (507)
Q Consensus       204 ~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~  233 (507)
                      +.+|+.+..+     +.+++|++. ++....
T Consensus       152 g~l~v~~~~~-----~~v~~~~~~~~g~~~~  177 (347)
T 3hfq_A          152 NRLAVIDLGS-----DKVYVYNVSDAGQLSE  177 (347)
T ss_dssp             SCEEEEETTT-----TEEEEEEECTTSCEEE
T ss_pred             CcEEEEeCCC-----CEEEEEEECCCCcEEE
Confidence            5576654322     468899987 555554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.55  E-value=0.34  Score=45.37  Aligned_cols=236  Identities=9%  Similarity=-0.004  Sum_probs=116.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+|+.++.     .+.+.+||+.++........+                  ....+++..  ++.+|+.+..     
T Consensus         9 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~s~dg~~l~~~~~~-----   60 (331)
T 3u4y_A            9 SNFGIVVEQH-----LRRISFFSTDTLEILNQITLG------------------YDFVDTAITSDCSNVVVTSDF-----   60 (331)
T ss_dssp             CCEEEEEEGG-----GTEEEEEETTTCCEEEEEECC------------------CCEEEEEECSSSCEEEEEEST-----
T ss_pred             CCEEEEEecC-----CCeEEEEeCcccceeeeEEcc------------------CCcceEEEcCCCCEEEEEeCC-----
Confidence            4677877652     357999999998875544322                  111122221  3457776652     


Q ss_pred             CcceEEEEECCCCcE-EEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          115 DSMIVRFIDLETNLC-GVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                       ...+++||+.++.. ......+..|    .++++..  +..+| .+..+.   ....+.+||+.+++.......+.   
T Consensus        61 -~~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~---  128 (331)
T 3u4y_A           61 -CQTLVQIETQLEPPKVVAIQEGQSS----MADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIPIPY---  128 (331)
T ss_dssp             -TCEEEEEECSSSSCEEEEEEECSSC----CCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEECCT---
T ss_pred             -CCeEEEEECCCCceeEEecccCCCC----ccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEECCC---
Confidence             23699999999875 3322222211    1212222  33566 332221   12379999999887655433222   


Q ss_pred             CCCCceEEEEcCC-EEEEEcCCCCCCCCCc-EEEEECCCCc-EEecccCCCCCCCCCccEEEEE-CC-eEEEEeccCCCC
Q 010551          192 PRYDHSAALHANR-YLIVFGGCSHSIFFND-LHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNN  266 (507)
Q Consensus       192 ~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~-i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~  266 (507)
                        ..+.++...++ ++|+.+..+     +. +++|++.... ...... ...+.......++.. ++ .+|+.+..    
T Consensus       129 --~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~----  196 (331)
T 3u4y_A          129 --DAVGIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQ-EFISGGTRPFNITFTPDGNFAFVANLI----  196 (331)
T ss_dssp             --TEEEEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEE-EEECSSSSEEEEEECTTSSEEEEEETT----
T ss_pred             --CccceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCC-ccccCCCCccceEECCCCCEEEEEeCC----
Confidence              12444444443 577665432     35 7777765432 111100 001111112233332 33 46666532    


Q ss_pred             CcceEEEEECCCCcE-EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCC
Q 010551          267 GCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       267 ~~~~~~~~d~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w  335 (507)
                       .+.+.+||+.+... ..+..++..      .........+++.+||+....    .+.++++|+.....
T Consensus       197 -~~~v~v~d~~~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~----~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          197 -GNSIGILETQNPENITLLNAVGTN------NLPGTIVVSRDGSTVYVLTES----TVDVFNFNQLSGTL  255 (331)
T ss_dssp             -TTEEEEEECSSTTSCEEEEEEECS------SCCCCEEECTTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred             -CCeEEEEECCCCcccceeeeccCC------CCCceEEECCCCCEEEEEEcC----CCEEEEEECCCCce
Confidence             23688999987764 112122111      111223344445567765431    34588888876543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.51  E-value=0.24  Score=50.95  Aligned_cols=274  Identities=15%  Similarity=0.067  Sum_probs=138.7

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEcc--CCceeeeccccccCCCc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~   78 (507)
                      ..++++|+.+.+-...-..|     ...|.+++.  +..+|+.+.      .+.+.+||+.  +.+  .+.....     
T Consensus       177 ~~V~viD~~t~~v~~~i~~g-----~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~t~~--~v~~i~~-----  238 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGR------DGKVNMIDLWMKEPT--TVAEIKI-----  238 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEET------TSEEEEEETTSSSCC--EEEEEEC-----
T ss_pred             CeEEEEECCCCeEEEEEeCC-----CCccceEECCCCCEEEEEcC------CCeEEEEECCCCCCc--EeEEEec-----
Confidence            45778888887655322122     233444443  557787642      2469999995  442  2221110     


Q ss_pred             cccCCCcCCCCCccceeEEE-----ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCC--------CCCCcCc
Q 010551           79 TEDSGLLEVLPPMSDHCMVK-----WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------PVTRGGH  145 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~-----~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~--------p~~r~~~  145 (507)
                              ...||  +.++.     -+..+|+..-.      .+.+.++|..|.+=....+++.+        |.+|...
T Consensus       239 --------G~~P~--~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          239 --------GSEAR--SIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             --------CSEEE--EEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             --------CCCCc--eeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence                    01122  22222     23456665432      34588899888765443322222        1223222


Q ss_pred             EEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEE
Q 010551          146 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       146 ~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~  224 (507)
                      ..+..++..+++-=.     ..+.++..|..+.+...+..   .+..+.-|.+..-. ++++|+...     ..|.+.++
T Consensus       303 i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~Vi  369 (567)
T 1qks_A          303 ILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVI  369 (567)
T ss_dssp             EEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEE
T ss_pred             EEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeee---eeccccccCceECCCCCEEEEEeC-----CCCeEEEE
Confidence            222222222332211     24578888887766544432   23344445544433 345555332     24679999


Q ss_pred             ECCCCcEEecccC-CCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCC-----cEEEeccCCCCCCCCCC
Q 010551          225 DLQTNEWSQPEIK-GDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL-----AWSILTSVKGRNPLASE  296 (507)
Q Consensus       225 d~~~~~W~~~~~~-~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~-----~W~~v~~~~~~~~~~~~  296 (507)
                      |+.+++-...-.. +..|.|..+... ..  ++.+|+.+-..    ...+.++|..+.     .|+.+..++...     
T Consensus       370 D~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----  439 (567)
T 1qks_A          370 DTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPALG-----  439 (567)
T ss_dssp             ETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSC-----
T ss_pred             ECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEecCC-----
Confidence            9999875543334 556665433332 23  24666654211    135778887763     377765554321     


Q ss_pred             CCceEEEEEcCceEEEEEccCCCC--cCceEEEEECCCC
Q 010551          297 GLSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPR  333 (507)
Q Consensus       297 ~~~~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~~~~~  333 (507)
                      ..+......++..++||---.+..  ..+.+.+||+.+.
T Consensus       440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            122223344556688884322211  3568899998655

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.38  Score=46.54  Aligned_cols=145  Identities=12%  Similarity=0.044  Sum_probs=72.3

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      +..++.|+.+      ..+.+||+.++.-....   .... ..-.+++.. ++.+++.|+.+      ..+.+||+.+..
T Consensus       217 ~~~~~~~~~~------g~i~~~d~~~~~~~~~~---~~~~-~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~  280 (425)
T 1r5m_A          217 DDKFVIPGPK------GAIFVYQITEKTPTGKL---IGHH-GPISVLEFNDTNKLLLSASDD------GTLRIWHGGNGN  280 (425)
T ss_dssp             TTEEEEECGG------GCEEEEETTCSSCSEEE---CCCS-SCEEEEEEETTTTEEEEEETT------SCEEEECSSSBS
T ss_pred             CCEEEEEcCC------CeEEEEEcCCCceeeee---ccCC-CceEEEEECCCCCEEEEEcCC------CEEEEEECCCCc
Confidence            3445666543      34899999886432221   1111 111122222 45566666654      358889887654


Q ss_pred             EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEE
Q 010551          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYI  258 (507)
Q Consensus       180 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v  258 (507)
                      ....-.    .......+++...++ +++.|+.+     ..+.+||+.+..-..... .   ......+++.. ++.+++
T Consensus       281 ~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~-~---~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          281 SQNCFY----GHSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSI-V---DGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             CSEEEC----CCSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEE-C---TTCCEEEEEECTTSSEEE
T ss_pred             cceEec----CCCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecc-c---CCccEEEEEEcCCCCEEE
Confidence            322211    111222334444566 66666644     368999998776443211 1   01111122222 456777


Q ss_pred             EeccCCCCCcceEEEEECCCCc
Q 010551          259 VGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      +|+.++     .+.+||+.+..
T Consensus       347 ~~~~dg-----~i~i~~~~~~~  363 (425)
T 1r5m_A          347 VAFMDG-----QVNVYDLKKLN  363 (425)
T ss_dssp             EEETTS-----CEEEEECHHHH
T ss_pred             EEECCC-----eEEEEECCCCc
Confidence            766433     47788876554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.43  E-value=0.65  Score=43.93  Aligned_cols=135  Identities=15%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      .+.+||+.++.-...-. +  .  .....++.+  ++.+++.|+.++      .+.++|+.+..-...-. +   ....-
T Consensus       165 ~i~~wd~~~~~~~~~~~-~--h--~~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~~-~---h~~~v  229 (340)
T 1got_B          165 TCALWDIETGQQTTTFT-G--H--TGDVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTFT-G---HESDI  229 (340)
T ss_dssp             CEEEEETTTTEEEEEEC-C--C--SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEEC-C---CSSCE
T ss_pred             cEEEEECCCCcEEEEEc-C--C--CCceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEEc-C---CcCCE
Confidence            48899998886443221 1  1  111222333  456777777653      58889988765432211 0   01111


Q ss_pred             ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEE
Q 010551          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIV  273 (507)
Q Consensus       196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~  273 (507)
                      .+++...++.+++.|+.+     ..+.+||+.+..-....  . .+........+.+  ++.+++.|+.++     .+.+
T Consensus       230 ~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~--~-~~~~~~~v~~~~~s~~g~~l~~g~~d~-----~i~v  296 (340)
T 1got_B          230 NAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTY--S-HDNIICGITSVSFSKSGRLLLAGYDDF-----NCNV  296 (340)
T ss_dssp             EEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE--C-CTTCCSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred             EEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEE--c-cCCcccceEEEEECCCCCEEEEECCCC-----eEEE
Confidence            223333455577777754     35888998876533211  1 1111112222333  456777776443     4788


Q ss_pred             EECCCCc
Q 010551          274 LNMTKLA  280 (507)
Q Consensus       274 ~d~~~~~  280 (507)
                      ||+.+..
T Consensus       297 wd~~~~~  303 (340)
T 1got_B          297 WDALKAD  303 (340)
T ss_dssp             EETTTCC
T ss_pred             EEcccCc
Confidence            8876654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.41  E-value=1  Score=46.45  Aligned_cols=123  Identities=16%  Similarity=0.146  Sum_probs=70.4

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCcc---ceeEEEECCEEEE
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMS---DHCMVKWGTKLLI  105 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~---~~~~~~~~~~lyv  105 (507)
                      .+.++.++.||+....      +.++.+|..+++  |+.-......             ..+.+   ..+.+..++.||+
T Consensus        62 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~-------------~~~~~~~~~~g~a~~~~~v~~  122 (582)
T 1flg_A           62 SQAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDD-------------IRPCCDVVNRGAAIYGDKVFF  122 (582)
T ss_dssp             CCCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTT-------------CCCSSCSCCCCCEEETTEEEE
T ss_pred             eccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcc-------------cccccccCCCccEEECCEEEE
Confidence            3456679999998753      249999998875  8764432110             00111   2344567888888


Q ss_pred             EeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCC--cCcEEEEECC------EEEEEcCCCCCCCccCcEEEEEC
Q 010551          106 LGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTR--GGHSVTLVGS------RLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r--~~~~~~~~~~------~iy~~GG~~~~~~~~n~~~~~d~  175 (507)
                      ...       ...++.+|..|++  |+.-..   .+...  ...+-++.++      .+| +|...........++.||+
T Consensus       123 ~t~-------dg~l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~  191 (582)
T 1flg_A          123 GTL-------DASVVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDP  191 (582)
T ss_dssp             EET-------TTEEEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECT
T ss_pred             EeC-------CCEEEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEEC
Confidence            532       2359999999986  876431   11111  1112234455      444 4443211112457999999


Q ss_pred             CCCc--EEEe
Q 010551          176 ETMT--WDAV  183 (507)
Q Consensus       176 ~t~~--W~~~  183 (507)
                      .+++  |+..
T Consensus       192 ~tG~~~W~~~  201 (582)
T 1flg_A          192 DTGEEIWMRP  201 (582)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEeecC
Confidence            8875  9754

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=96.41  E-value=0.1  Score=40.02  Aligned_cols=71  Identities=15%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             hccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010551          423 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQT  493 (507)
Q Consensus       423 ~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~~~~~~~~  493 (507)
                      ......+++++...+...+.++.++.+||+..-.++++.+...    +++.+..+.-.+..-++.|+++...++.
T Consensus        34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~  108 (111)
T 2v66_B           34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLV  108 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566777888888888888999999999988888877665    7778888888888888999887655543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.36  E-value=0.11  Score=48.40  Aligned_cols=231  Identities=7%  Similarity=0.011  Sum_probs=109.5

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-C-CEEEEEcCCCCCccCCceEEEEccCCceeee-ccccccCCCcc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-D-QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL-RLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~~~~~~~~~   79 (507)
                      .++++||+.+.++..+............++++.. + +.||+....      +.+++||+. ++...+ .....      
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~------  112 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEIAKKDSE------  112 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-SCEEECCSBCTT------
T ss_pred             CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEEEeccCC------
Confidence            3578889888888876530000011122333333 4 688887641      369999998 776554 32110      


Q ss_pred             ccCCCcCCCCCccceeEEE-ECCEEEEEeccC---------CCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE
Q 010551           80 EDSGLLEVLPPMSDHCMVK-WGTKLLILGGHY---------KKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL  149 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~---------~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~  149 (507)
                            ..+..+. +.++. -++++|+.....         ........+++||+. ++...+......|     ..++.
T Consensus       113 ------~~~~~~~-~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-----~~i~~  179 (314)
T 1pjx_A          113 ------GRRMQGC-NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP-----NGIAV  179 (314)
T ss_dssp             ------SCBCBCC-CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE-----EEEEE
T ss_pred             ------CccccCC-cCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc-----ceEEE
Confidence                  0111111 22222 256788765432         111123579999987 6665543211111     22233


Q ss_pred             E-----CC-EEEEEcCCCCCCCccCcEEEEECC-CCcEEEeccCCCCCCC--CCCceEEEEcCCEEEEEcCCCCCCCCCc
Q 010551          150 V-----GS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAP--RYDHSAALHANRYLIVFGGCSHSIFFND  220 (507)
Q Consensus       150 ~-----~~-~iy~~GG~~~~~~~~n~~~~~d~~-t~~W~~~~~~~~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~~  220 (507)
                      .     ++ .+|+....      .+.+++||+. +++..........+..  ..-..++.-.++.+|+....     .+.
T Consensus       180 ~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~  248 (314)
T 1pjx_A          180 RHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSH  248 (314)
T ss_dssp             EECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTE
T ss_pred             ecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCE
Confidence            3     23 46665432      2468899876 4443322111011111  11123333345667775322     136


Q ss_pred             EEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCe-EEEEeccCCCCCcceEEEEECCCC
Q 010551          221 LHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       221 i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      +.+||+.++......   ..+. ....+++.. +++ ||+.....     ..++.|++...
T Consensus       249 i~~~d~~~g~~~~~~---~~~~-~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~~~  300 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRI---RCPF-EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQRN  300 (314)
T ss_dssp             EEEECTTCBSCSEEE---ECSS-SCEEEEEECTTSSEEEEEETTT-----TEEEEEECSSC
T ss_pred             EEEEcCCCCcEeEEE---eCCC-CCceeEEECCCCCEEEEEeCCC-----CeEEEEeCCCC
Confidence            899998755432110   1111 122233322 334 66664322     36888887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.23  E-value=0.022  Score=59.37  Aligned_cols=9  Identities=33%  Similarity=0.475  Sum_probs=3.5

Q ss_pred             EEEEECCCC
Q 010551          119 VRFIDLETN  127 (507)
Q Consensus       119 ~~~yd~~t~  127 (507)
                      +..+++..+
T Consensus       125 L~~L~L~~n  133 (597)
T 3oja_B          125 LTVLVLERN  133 (597)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEEeeCC
Confidence            333444333

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.22  E-value=1.1  Score=44.29  Aligned_cols=183  Identities=11%  Similarity=0.067  Sum_probs=93.0

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++.+++.|+.+.      .+.+||+.++.-....   ...  .....++.+  ++..++.|+.++      .+.+||+.+
T Consensus       279 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~--~~~v~~~~~~~~~~~l~sg~~dg------~i~vwd~~~  341 (464)
T 3v7d_B          279 HGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGH--TDRIYSTIYDHERKRCISASMDT------TIRIWDLEN  341 (464)
T ss_dssp             ETTEEEEEETTS------CEEEEETTTTEEEEEE---CCC--SSCEEEEEEETTTTEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCC--CCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Confidence            455566665432      3899999887644322   111  111222222  445666676543      599999987


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  257 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  257 (507)
                      .+-...-.     ........+...++ .++.|+.+     ..+.+||+.+..-.....    ........+...++.++
T Consensus       342 ~~~~~~~~-----~h~~~v~~~~~~~~-~l~s~s~d-----g~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l  406 (464)
T 3v7d_B          342 GELMYTLQ-----GHTALVGLLRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNIL  406 (464)
T ss_dssp             TEEEEEEC-----CCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEE
T ss_pred             CcEEEEEe-----CCCCcEEEEEEcCC-EEEEEeCC-----CcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEE
Confidence            75332211     11222234445555 56666654     358899988765332210    11112223344466777


Q ss_pred             EEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEEC
Q 010551          258 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       258 v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~  330 (507)
                      +.|+ +     ..+.+||+.+..-......+.       ......+..+ +..+++.|+.++  ..-++.+|.
T Consensus       407 ~~~~-d-----g~i~iwd~~~g~~~~~~~~~~-------~~~v~~v~~~-~~~l~~~~~~~g--~~~i~~ldf  463 (464)
T 3v7d_B          407 VSGS-E-----NQFNIYNLRSGKLVHANILKD-------ADQIWSVNFK-GKTLVAAVEKDG--QSFLEILDF  463 (464)
T ss_dssp             EEEE-T-----TEEEEEETTTCCEEESCTTTT-------CSEEEEEEEE-TTEEEEEEEETT--EEEEEEEEC
T ss_pred             EEec-C-----CeEEEEECCCCcEEehhhccC-------CCcEEEEEec-CCEEEEEEEeCC--eEEEEEeec
Confidence            7765 2     258899998876543211111       1112222333 346666665443  344566664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.16  E-value=0.87  Score=47.94  Aligned_cols=203  Identities=15%  Similarity=0.124  Sum_probs=104.8

Q ss_pred             CCCeEeeCCCC--ceEEeecCCCCCCc-----cccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccc
Q 010551            3 SGSWHLELPYD--LWVTLPVSGARPSP-----RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~~~~--~W~~~~~~~~~p~~-----r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~   73 (507)
                      ..++++|..+.  .|+.-........+     ....+.++.++.||+...      ...++.+|..+++  |+.-.....
T Consensus        87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~  160 (677)
T 1kb0_A           87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRLIALDAATGKEVWHQNTFEGQ  160 (677)
T ss_dssp             GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEETTTTC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEEEEEECCCCCEEeeecCCcCc
Confidence            34688888765  68765521110000     122345557888888653      2469999998875  765432000


Q ss_pred             cCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCC--CC---------
Q 010551           74 LDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV--PV---------  140 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~--p~---------  140 (507)
                                   ........+.++.++.||+..+... ......++.||..|++  |+.-......  |.         
T Consensus       161 -------------~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~  226 (677)
T 1kb0_A          161 -------------KGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA  226 (677)
T ss_dssp             -------------CSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             -------------CcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence                         0001122234456888877544222 1124569999999886  8765421111  00         


Q ss_pred             ------CC-----c---CcEEEEE---CCEEEEEcCCC------------CCCCccCcEEEEECCCCc--EEEeccCCCC
Q 010551          141 ------TR-----G---GHSVTLV---GSRLIIFGGED------------RSRKLLNDVHFLDLETMT--WDAVEVTQTP  189 (507)
Q Consensus       141 ------~r-----~---~~~~~~~---~~~iy~~GG~~------------~~~~~~n~~~~~d~~t~~--W~~~~~~~~~  189 (507)
                            ..     .   ......+   ++.+|+-.|..            ++..+.+.++.+|+.|++  |..-....+.
T Consensus       227 ~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~  306 (677)
T 1kb0_A          227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN  306 (677)
T ss_dssp             TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred             ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc
Confidence                  00     0   0012222   45666654432            334456789999999875  8755432211


Q ss_pred             CCCCCCceEEEEc---CC---EEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          190 PAPRYDHSAALHA---NR---YLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       190 p~~r~~~~~~~~~---~~---~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      .........++.+   ++   .+++++..+     ..++.+|..+++
T Consensus       307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~-----G~l~~lD~~tG~  348 (677)
T 1kb0_A          307 WDYTSTQPMILADIKIAGKPRKVILHAPKN-----GFFFVLDRTNGK  348 (677)
T ss_dssp             SCCCCCSCCEEEEEEETTEEEEEEEECCTT-----SEEEEEETTTCC
T ss_pred             cccccCCCcEEEecccCCcEeeEEEEECCC-----CEEEEEECCCCC
Confidence            1111112222222   22   456665543     368888888775

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.13  E-value=0.85  Score=43.09  Aligned_cols=229  Identities=15%  Similarity=0.101  Sum_probs=108.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|..++.-...-...                  ......+.+  ++.+++.||.+    
T Consensus        66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~s~~~d----  118 (340)
T 1got_B           66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLR------------------SSWVMTCAYAPSGNYVACGGLD----  118 (340)
T ss_dssp             TSSEEEEEETT-----TEEEEEETTTCCEEEEEECS------------------SSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCcceEeecC------------------CccEEEEEECCCCCEEEEEeCC----
Confidence            45566666644     35888898776532221111                  111122222  45566667653    


Q ss_pred             CcceEEEEECCCCc--EEEeecCCCCCCCCcCcE-EEE-ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCC
Q 010551          115 DSMIVRFIDLETNL--CGVMETSGKVPVTRGGHS-VTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~-~~~-~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p  190 (507)
                        ..+.+||+.+..  ......   +........ +.. -++. ++.|+.+      ..+.++|+.+..-...-. +   
T Consensus       119 --~~v~iw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~~~-~---  182 (340)
T 1got_B          119 --NICSIYNLKTREGNVRVSRE---LAGHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTTFT-G---  182 (340)
T ss_dssp             --CEEEEEETTTCSBSCEEEEE---EECCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEEEC-C---
T ss_pred             --CeEEEEECccCCCcceeEEE---ecCCCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEEEc-C---
Confidence              347888887653  111110   000011112 222 2455 4455543      358899998876443211 1   


Q ss_pred             CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcc
Q 010551          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~  269 (507)
                      ....-.+++...++.+++.|+.++     .+.+||+.++.-...-. +   ....-.+++.. ++.+++.|+.++     
T Consensus       183 h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~~~~~~~~-~---h~~~v~~v~~~p~~~~l~s~s~d~-----  248 (340)
T 1got_B          183 HTGDVMSLSLAPDTRLFVSGACDA-----SAKLWDVREGMCRQTFT-G---HESDINAICFFPNGNAFATGSDDA-----  248 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCSEEEEEC-C---CSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred             CCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEc-C---CcCCEEEEEEcCCCCEEEEEcCCC-----
Confidence            111122333334555777777543     58889988765433210 1   01111122222 456777776543     


Q ss_pred             eEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       270 ~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      .+.+||+.+..-......+..      ......+....+..+++.|+.+    ..+.++|...
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~g~~d----~~i~vwd~~~  301 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDNI------ICGITSVSFSKSGRLLLAGYDD----FNCNVWDALK  301 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTC------CSCEEEEEECTTSSEEEEEETT----SEEEEEETTT
T ss_pred             cEEEEECCCCcEEEEEccCCc------ccceEEEEECCCCCEEEEECCC----CeEEEEEccc
Confidence            377888877643221111110      1122333444444556667654    4577777644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.10  E-value=0.42  Score=50.51  Aligned_cols=245  Identities=10%  Similarity=-0.032  Sum_probs=118.1

Q ss_pred             CeEeeCCCCceEEeecCCCCCCc---cccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            5 SWHLELPYDLWVTLPVSGARPSP---RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~---r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      .|..+.....|..+.....+...   ........-+++.+++.-...+.....++++|+.++.........         
T Consensus        96 l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---------  166 (695)
T 2bkl_A           96 LYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE---------  166 (695)
T ss_dssp             EEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS---------
T ss_pred             EEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC---------
Confidence            47777666677776521111000   111111112555555543222333457999999998764111100         


Q ss_pred             CCCcCCCCCccceeEEEECCEEEEEeccCCCC-------CCcceEEEEECCCCcEE--EeecCCCCCCCCcCcEEEEE--
Q 010551           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS-------SDSMIVRFIDLETNLCG--VMETSGKVPVTRGGHSVTLV--  150 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-------~~~~~~~~yd~~t~~W~--~~~~~g~~p~~r~~~~~~~~--  150 (507)
                             .......+..-+++.++++......       .....++++++.++.-.  .+.   ..+..........+  
T Consensus       167 -------~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~Sp  236 (695)
T 2bkl_A          167 -------GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSR  236 (695)
T ss_dssp             -------CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECT
T ss_pred             -------cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECC
Confidence                   0111111222255555555543321       12456999999887632  222   11111112222233  


Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      +++.++++..+..  ..++++.+|..+..|..+....     ......+..+++ +|+....+  .....|+.+|+.+..
T Consensus       237 DG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~-----~~~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          237 DGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKGV-----GAKYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPA  306 (695)
T ss_dssp             TSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEECS-----SCCEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCS
T ss_pred             CCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecCC-----CceEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCC
Confidence            3443444433221  2567898988778888886421     111222234455 66654432  223579999987764


Q ss_pred             ---EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEe
Q 010551          231 ---WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       231 ---W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v  284 (507)
                         |..+..  ..+. .....+...++.+++....+   ....++++++....-..+
T Consensus       307 ~~~~~~l~~--~~~~-~~l~~~~~~~~~lv~~~~~d---g~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          307 RASWKEIVP--EDSS-ASLLSVSIVGGHLSLEYLKD---ATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             GGGCEEEEC--CCSS-CEEEEEEEETTEEEEEEEET---TEEEEEEEETTCCEEEEC
T ss_pred             ccCCeEEec--CCCC-CeEEEEEEECCEEEEEEEEC---CEEEEEEEeCCCCeeEEe
Confidence               776532  1111 11122333477777765432   345788898765544444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.08  E-value=0.41  Score=50.09  Aligned_cols=150  Identities=13%  Similarity=-0.023  Sum_probs=82.6

Q ss_pred             cceEEEEECC-CC---cEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCC-
Q 010551          116 SMIVRFIDLE-TN---LCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT-  188 (507)
Q Consensus       116 ~~~~~~yd~~-t~---~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~-  188 (507)
                      ...++++|+. ++   ....+...   .  ........+  ++++|+.+..++    ...++.+|+.+.++..+..... 
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~---~--~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGG---P--EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEE---T--TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSB
T ss_pred             CcEEEEEEECCCCcccccEEeCCC---C--CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeeccccccc
Confidence            4679999999 67   44444311   0  111122222  567776665442    3469999998888887754211 


Q ss_pred             C--CCCCC-CceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEE-EEECCeEEEEeccCC
Q 010551          189 P--PAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG-ITIDENWYIVGGGDN  264 (507)
Q Consensus       189 ~--p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~l~v~GG~~~  264 (507)
                      .  |.-.. ....+...++.+++.+..    ....+|.+|+.++....+..    +. .....+ ..-++.+++..+.. 
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~~----~~-~~~~~~~s~~~~~~~~~~~~~-  356 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK----GAAVLGILDPESGELVDAAG----PW-TEWAATLTVSGTRAVGVAASP-  356 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS----SSCEEEEEETTTTEEEECCS----SC-CEEEEEEEEETTEEEEEEEET-
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc----CccEEEEEECCCCcEEEecC----CC-CeEEEEEecCCCEEEEEEcCC-
Confidence            0  10010 122333445556665543    23578999998888766532    11 111222 33456666554422 


Q ss_pred             CCCcceEEEEECCCCcEEEec
Q 010551          265 NNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       265 ~~~~~~~~~~d~~~~~W~~v~  285 (507)
                       .....+|.+|+.+...+.+.
T Consensus       357 -~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          357 -RTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             -TEEEEEEEEETTTCCEEEEE
T ss_pred             -CCCCEEEEEECCCCceEEee
Confidence             23457899999888877764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.08  E-value=0.78  Score=44.02  Aligned_cols=116  Identities=12%  Similarity=0.031  Sum_probs=55.3

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCC-CC-CCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ-TP-PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~-~~-p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                      ++ +++.|+.+      ..+.+||+.+.+-...-... .. +....-.+++...++.+++.|+.++  ....+.+||+.+
T Consensus       197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~  267 (397)
T 1sq9_A          197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEF  267 (397)
T ss_dssp             TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTT
T ss_pred             Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCC
Confidence            45 66666654      35899999877543322110 00 0011122233333444666666431  113688999887


Q ss_pred             CcEEecccCCCCCC--------CCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          229 NEWSQPEIKGDLVT--------GRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       229 ~~W~~~~~~~~~p~--------~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ..-...-.....+.        ....-..+.+  ++.+++.|+.++     .+.+||+.+..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  324 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-----KLRFWDVKTKE  324 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTE
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCc
Confidence            65333211000000        1111122223  456677766433     57889987764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.07  E-value=1  Score=42.82  Aligned_cols=135  Identities=12%  Similarity=0.019  Sum_probs=70.2

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE----CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                      .+.+||+.++.-...-. +.  .  ....++.+    ++.+++.|+.++      .+.++|+.+.+....-. +   ...
T Consensus       177 ~v~lwd~~~~~~~~~~~-~h--~--~~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~-~---h~~  241 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFH-GH--G--ADVLCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAFE-T---HES  241 (354)
T ss_dssp             EEEEEETTTCCEEEEEE-CC--S--SCEEEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEEC-C---CSS
T ss_pred             cEEEEeCCCCeEEEEEc-CC--C--CCeEEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEec-C---CCC
Confidence            48889998886543221 11  0  11122222    246777787653      58999998877543321 0   011


Q ss_pred             CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceE
Q 010551          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       194 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~  271 (507)
                      .-.+++...++.+++.|+.++     .+.+||+.+..-.....   ..........+.+  ++.+++.|+.++     .+
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d~-----~i  308 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYS---KESIIFGASSVDFSLSGRLLFAGYNDY-----TI  308 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTS-----CE
T ss_pred             CeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEc---CCCcccceeEEEEeCCCCEEEEEECCC-----cE
Confidence            112223333455777777543     58889988765333211   1111122223333  456777766433     47


Q ss_pred             EEEECCCCc
Q 010551          272 IVLNMTKLA  280 (507)
Q Consensus       272 ~~~d~~~~~  280 (507)
                      .+||+.+..
T Consensus       309 ~vwd~~~~~  317 (354)
T 2pbi_B          309 NVWDVLKGS  317 (354)
T ss_dssp             EEEETTTCS
T ss_pred             EEEECCCCc
Confidence            888886654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.04  E-value=0.87  Score=41.59  Aligned_cols=214  Identities=9%  Similarity=-0.041  Sum_probs=107.9

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .++.||+. .....+...   ......+++++. ++.||+....     ...+++||+ ++.........          
T Consensus        79 ~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~----------  138 (299)
T 2z2n_A           79 KIGRITKK-GIIKEYTLP---NPDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPN----------  138 (299)
T ss_dssp             EEEEECTT-SCEEEEECS---STTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSS----------
T ss_pred             eEEEECCC-CcEEEEeCC---CcCCCceeeEECCCCCEEEEecC-----CceEEEECC-CCCEEEecCCC----------
Confidence            36677765 555555421   112223344443 5678886532     246889998 66655433211          


Q ss_pred             CCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcC
Q 010551           83 GLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGG  159 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG  159 (507)
                            ....-++++.. ++++|+....      ...+++||+ +++......    +..........+  ++.||+...
T Consensus       139 ------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~  201 (299)
T 2z2n_A          139 ------KGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFKI----PTPASGPVGITKGNDDALWFVEI  201 (299)
T ss_dssp             ------TTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEET
T ss_pred             ------CCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEeeC----CCCCCcceeEEECCCCCEEEEcc
Confidence                  01112233333 5678875421      345999999 887776532    111122222333  357776543


Q ss_pred             CCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCC
Q 010551          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       160 ~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      .      .+.+.+||+ ++..........   ...-.+++.-.++.+|+....     .+.+++||+ ++..........
T Consensus       202 ~------~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~  265 (299)
T 2z2n_A          202 I------GNKIGRITT-SGEITEFKIPTP---NARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPIQIK  265 (299)
T ss_dssp             T------TTEEEEECT-TCCEEEEECSST---TCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEEECSSS
T ss_pred             C------CceEEEECC-CCcEEEEECCCC---CCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEEeCCCC
Confidence            2      346999999 777766532111   111223333345567775421     246899998 455544321111


Q ss_pred             CCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       240 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                         ....++++.-++.+|+...      .+.+..|++.+.
T Consensus       266 ---~~~~~~i~~~~g~l~v~~~------~~~l~~~~~~~~  296 (299)
T 2z2n_A          266 ---SAEPHGICFDGETIWFAME------CDKIGKLTLIKD  296 (299)
T ss_dssp             ---SCCEEEEEECSSCEEEEET------TTEEEEEEEC--
T ss_pred             ---CCccceEEecCCCEEEEec------CCcEEEEEcCcc
Confidence               1122344444456776642      135778887664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.03  E-value=0.91  Score=41.79  Aligned_cols=235  Identities=10%  Similarity=-0.106  Sum_probs=117.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.||+.+..     ...++.||+.++ ...+....                  ..-++++.. +++||+....      
T Consensus        39 g~~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~~------------------~~~~~l~~~~dg~l~v~~~~------   88 (296)
T 3e5z_A           39 RSAVIFSDVR-----QNRTWAWSDDGQ-LSPEMHPS------------------HHQNGHCLNKQGHLIACSHG------   88 (296)
T ss_dssp             GTEEEEEEGG-----GTEEEEEETTSC-EEEEESSC------------------SSEEEEEECTTCCEEEEETT------
T ss_pred             CCEEEEEeCC-----CCEEEEEECCCC-eEEEECCC------------------CCcceeeECCCCcEEEEecC------
Confidence            3458887753     246999999987 55443211                  111233322 5677765421      


Q ss_pred             cceEEEEECCCCcEEEeecC-CCCCCCCcCcEEEEECCEEEEE----cCCCC-------CCCccCcEEEEECCCCcEEEe
Q 010551          116 SMIVRFIDLETNLCGVMETS-GKVPVTRGGHSVTLVGSRLIIF----GGEDR-------SRKLLNDVHFLDLETMTWDAV  183 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~-g~~p~~r~~~~~~~~~~~iy~~----GG~~~-------~~~~~n~~~~~d~~t~~W~~~  183 (507)
                      ...+.+||+.+++...+... ...+..+....++.-++.+|+.    |..+.       .....+.+++||+. ++...+
T Consensus        89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (296)
T 3e5z_A           89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP  167 (296)
T ss_dssp             TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred             CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence            23599999999988766421 0111111112222235678875    43110       01113479999987 555554


Q ss_pred             ccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC-CCcE-EecccCCCCCCCCCccEEEEE-CCeEEEEe
Q 010551          184 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEW-SQPEIKGDLVTGRAGHAGITI-DENWYIVG  260 (507)
Q Consensus       184 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W-~~~~~~~~~p~~r~~~~~~~~-~~~l~v~G  260 (507)
                      ..  ...   .-.+++...++.+++.+..     .+.+++||+. ++.. ...... ... .....+++.- ++++||..
T Consensus       168 ~~--~~~---~~~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~-~~~-~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          168 IR--DRV---KPNGLAFLPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHF-TVE-PGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             EC--CCS---SEEEEEECTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEE-CCS-SSCCCSEEEBTTSCEEEEE
T ss_pred             ec--CCC---CCccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEe-eCC-CCCCCeEEECCCCCEEEEc
Confidence            32  111   1123333334445544332     2479999986 5555 221111 111 1111123333 56788775


Q ss_pred             ccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCC
Q 010551          261 GGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       261 G~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w  335 (507)
                      +       ..+.+||+.......+.. +.       +...+.+.-++...|++...      ..+|.|++.+..-
T Consensus       236 ~-------~~v~~~~~~g~~~~~~~~-~~-------~~~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~~  289 (296)
T 3e5z_A          236 G-------DGVHVLTPDGDELGRVLT-PQ-------TTSNLCFGGPEGRTLYMTVS------TEFWSIETNVRGL  289 (296)
T ss_dssp             T-------TEEEEECTTSCEEEEEEC-SS-------CCCEEEEESTTSCEEEEEET------TEEEEEECSCCBC
T ss_pred             C-------CeEEEECCCCCEEEEEEC-CC-------CceeEEEECCCCCEEEEEcC------CeEEEEEcccccc
Confidence            1       358899988655554432 21       11111111233356777442      4689999876643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.03  E-value=0.65  Score=43.27  Aligned_cols=114  Identities=19%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCC--CCcCcEEEEE-CC-EEEEEcCC---CCCCC--ccCcE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV--TRGGHSVTLV-GS-RLIIFGGE---DRSRK--LLNDV  170 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~--~r~~~~~~~~-~~-~iy~~GG~---~~~~~--~~n~~  170 (507)
                      ++.+|+.++.      ...+++||+.+++-......+. +.  ...-+.++.. ++ .+|+....   .....  ..+.+
T Consensus        45 g~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i  117 (337)
T 1pby_B           45 GRIAYATVNK------SESLVKIDLVTGETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV  117 (337)
T ss_dssp             SSEEEEEETT------TTEEEEEETTTCCEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             CCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence            3467776642      2459999999887554322111 00  0011222222 33 66665311   00000  13679


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          171 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       171 ~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ++||+.+.+....-..+.     ..+.++...+ +++|+.+        +.++++|+.+++-..
T Consensus       118 ~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~--------~~i~~~d~~~~~~~~  168 (337)
T 1pby_B          118 ALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG--------RDLHVMDPEAGTLVE  168 (337)
T ss_dssp             EEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES--------SSEEEEETTTTEEEE
T ss_pred             EEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC--------CeEEEEECCCCcEee
Confidence            999998877554332221     1233343333 4466652        479999999887553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.063  Score=57.54  Aligned_cols=231  Identities=12%  Similarity=0.100  Sum_probs=111.1

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE--C--CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--D--QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~--~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~   78 (507)
                      ..+.++|+....+..+..   .......-.++..  +  +.+++.|+.+     ..+.++|+.++.|..+......    
T Consensus        31 g~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~h----   98 (753)
T 3jro_A           31 KTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVH----   98 (753)
T ss_dssp             TEEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCC----
T ss_pred             CcEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCcccccccccCC----
Confidence            345566666666665543   1111222222222  2  5677777644     3589999999887766543211    


Q ss_pred             cccCCCcCCCCCccceeEEEE--C--CEEEEEeccCCCCCCcceEEEEECCCCcEEE-eecCCCCCCCCcCcEEEEE---
Q 010551           79 TEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVTRGGHSVTLV---  150 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r~~~~~~~~---  150 (507)
                                  ......+.+  +  +.+++.|+.++      .+.+||+.++.-.. .... ..+   ....++.+   
T Consensus        99 ------------~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~-~~~---~~v~~l~~~p~  156 (753)
T 3jro_A           99 ------------SASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIID-AHA---IGVNSASWAPA  156 (753)
T ss_dssp             ------------SSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEE-CCS---SCEEEEEECCC
T ss_pred             ------------CCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEee-cCC---CceEEEEecCc
Confidence                        112223333  2  56777776432      48888887762111 1100 011   11122222   


Q ss_pred             ------------CCEEEEEcCCCCCCCccCcEEEEECCCC--cEEEeccCCCCCCCCCCceEEEEcC---CEEEEEcCCC
Q 010551          151 ------------GSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHAN---RYLIVFGGCS  213 (507)
Q Consensus       151 ------------~~~iy~~GG~~~~~~~~n~~~~~d~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~---~~l~v~GG~~  213 (507)
                                  ++.+++.|+.++      .+.+||+.+.  .+..+.....  ....-.+++...+   +.+++.||.+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             C---------CGGGCCEEEEETTS------CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             ccccccccccCCCCCEEEEEECCC------eEEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecC
Confidence                        245666776543      4788877554  3443322111  1111223333344   5678887765


Q ss_pred             CCCCCCcEEEEECCCCc--EEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCC-CcEEEecc
Q 010551          214 HSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK-LAWSILTS  286 (507)
Q Consensus       214 ~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~-~~W~~v~~  286 (507)
                      +     .+.+||+.+..  +.... .........-.+++.. ++..++.||.++     .+.+||+.+ ..|..+..
T Consensus       229 g-----~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~  294 (753)
T 3jro_A          229 R-----TCIIWTQDNEQGPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDN-----KVTLWKENLEGKWEPAGE  294 (753)
T ss_dssp             S-----CEEEEEESSSSSCCBCCB-SSSSCCSSCCCCEEECTTTCCEEEECSSS-----CEECCBCCSSSCCBCCCC
T ss_pred             C-----EEEEecCCCCCCcceeEE-eccCCCCCceEEEEEcCCCCEEEEEcCCC-----EEEEEecCCCCCcccccc
Confidence            3     57888887653  11110 0010111111122222 456777776543     366777763 45655443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.00  E-value=0.2  Score=48.02  Aligned_cols=151  Identities=11%  Similarity=0.136  Sum_probs=71.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.|..+......                ......+.+  ++.+++.|+.+.   
T Consensus        22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~s~d~---   77 (377)
T 3dwl_C           22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDH----------------DKIVTCVDWAPKSNRIVTCSQDR---   77 (377)
T ss_dssp             SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCC----------------SSCEEEEEECTTTCCEEEEETTS---
T ss_pred             CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecC----------------CceEEEEEEeCCCCEEEEEeCCC---
Confidence            55666777643     4588999998887766544211                111222333  456666666432   


Q ss_pred             CcceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCc-EEEeccCCCCC
Q 010551          115 DSMIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~-W~~~~~~~~~p  190 (507)
                         .+.+||+.++. |.....   .........++.+  ++.+++.|+.+.      .+.+||+.+.+ |..+.... .+
T Consensus        78 ---~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~-~~  144 (377)
T 3dwl_C           78 ---NAYVYEKRPDGTWKQTLV---LLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLK-RP  144 (377)
T ss_dssp             ---SEEEC------CCCCEEE---CCCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEEC-SS
T ss_pred             ---eEEEEEcCCCCceeeeeE---ecccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEee-cc
Confidence               38888888876 544331   1111112223333  456666776543      47888887654 32221110 11


Q ss_pred             CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ....-.+++...++.+++.|+.+     ..+.+||+.+.
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  178 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCAD-----RKAYVLSAYVR  178 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESS-----SCEEEEEECCS
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCC-----CEEEEEEEEec
Confidence            11222233333455577777754     35788887543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.00  E-value=1.3  Score=43.23  Aligned_cols=225  Identities=12%  Similarity=0.108  Sum_probs=107.9

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~  130 (507)
                      +.|+++|..++.-..+.....                ......++.+  ++.+++.|+.+.      .+.+||+.+++-.
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~----------------~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~  182 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRL  182 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEEecC----------------CCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEE
Confidence            468999999887655433211                1112233333  456677776543      3889999888643


Q ss_pred             EeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551          131 VMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  210 (507)
                      ...   ...  .....+...++.+++.|+.+.      .+..+|............+.   ...........++..++.|
T Consensus       183 ~~~---~~h--~~~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h---~~~~~~~~~~~~g~~l~s~  248 (420)
T 4gga_A          183 RNM---TSH--SARVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASG  248 (420)
T ss_dssp             EEE---CCC--SSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEE
T ss_pred             EEE---eCC--CCceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEeccc---ccceeeeeecCCCCeeeee
Confidence            322   111  122334455667777777543      47777776544332221111   1111122222344456666


Q ss_pred             CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE---CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccC
Q 010551          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~  287 (507)
                      +.+     +.+.+++..++.-..... ...........+...   +..+++.||+..+.   .+.++|+.+..-......
T Consensus       249 ~~D-----~~v~i~~~~~~~~~~~~~-~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~---~I~iwd~~t~~~~~~~~~  319 (420)
T 4gga_A          249 GND-----NLVNVWPSAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCSGACLSAVDA  319 (420)
T ss_dssp             ETT-----SCEEEEESSCCSSCSCCS-EEECCCSSCEEEEEECTTCTTEEEEEECTTTC---EEEEEETTTTEEEEEEEC
T ss_pred             ecc-----ccceEEeeccccccceee-eeecccCCceeeeeeCCCcccEEEEEeecCCC---EEEEEeCCccccceeecc
Confidence            544     356777776543111000 000001111111122   34566555433322   477889888764432221


Q ss_pred             CCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          288 KGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      .        .........+....+++.+|..   .+.+.++|+...
T Consensus       320 ~--------~~v~~~~~~~~~~~lv~~sg~~---d~~I~iwd~~~~  354 (420)
T 4gga_A          320 H--------SQVCSILWSPHYKELISGHGFA---QNQLVIWKYPTM  354 (420)
T ss_dssp             S--------SCEEEEEEETTTTEEEEEECTT---TCCEEEEETTTC
T ss_pred             c--------cceeeeeecCCCCeEEEEEecC---CCEEEEEECCCC
Confidence            1        1122233344455666665643   345778887543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.98  E-value=0.022  Score=59.36  Aligned_cols=6  Identities=17%  Similarity=0.329  Sum_probs=2.3

Q ss_pred             EECCCC
Q 010551          328 MRLKPR  333 (507)
Q Consensus       328 ~~~~~~  333 (507)
                      +++..+
T Consensus       350 L~l~~N  355 (597)
T 3oja_B          350 LTLSHN  355 (597)
T ss_dssp             EECCSS
T ss_pred             EEeeCC
Confidence            344333

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.98  E-value=1.1  Score=42.22  Aligned_cols=149  Identities=13%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCC-CcEE-EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLET-MTWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t-~~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                      ++..++.|+.+      ..+.+||+.+ ..-. .+..     ....-.+++...++.+++.|+.+     ..+.+||+.+
T Consensus       186 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~  249 (369)
T 3zwl_B          186 KGKYIIAGHKD------GKISKYDVSNNYEYVDSIDL-----HEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVST  249 (369)
T ss_dssp             GGCEEEEEETT------SEEEEEETTTTTEEEEEEEC-----CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCcEeEEEEec-----CCCceeEEEECCCCCEEEEecCC-----ceEEEEECCC
Confidence            34566666654      3589999987 3322 2221     11112233333355466666543     3689999988


Q ss_pred             CcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCC---------cceEEEEECCCCcEEEeccCCCCCCCCCCCC
Q 010551          229 NEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNG---------CQETIVLNMTKLAWSILTSVKGRNPLASEGL  298 (507)
Q Consensus       229 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~---------~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~  298 (507)
                      ........     .......++.. ++..+++|+..+...         ...+.+||..+..-...  +...      ..
T Consensus       250 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~------~~  316 (369)
T 3zwl_B          250 LQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR--VQGH------FG  316 (369)
T ss_dssp             CCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE--EECC------SS
T ss_pred             Cceeeeec-----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh--eecc------cC
Confidence            76554321     11111122222 345666655433211         12477888776642221  1111      11


Q ss_pred             ceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          299 SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       299 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      ....+....+..+++.||.+    ..+.++++..
T Consensus       317 ~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~  346 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGED----GFIRLHHFEK  346 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred             cEEEEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence            12223333333456667654    3566666643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.24  Score=52.97  Aligned_cols=106  Identities=12%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--C--CEEEEEeccCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~  112 (507)
                      ++.+++.||.+     ..+.+||+...++..+......                ......+.+  +  +.+++.|+.++ 
T Consensus        20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h----------------~~~V~~l~~s~~~~~~~l~s~s~Dg-   77 (753)
T 3jro_A           20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGH----------------EGPVWRVDWAHPKFGTILASCSYDG-   77 (753)
T ss_dssp             SSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCC----------------SSCEEEEEECCTTSCSEEEEEETTS-
T ss_pred             CCCeEEEEECC-----CcEEEEecCCCCCccceeccCC----------------cCceEEEEecCCCCCCEEEEEeCCC-
Confidence            45566666643     3588999887777766543211                112223333  2  56667776532 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--C--CEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                           .+.+||+.++.|..+...   ........++.+  +  +.+++.|+.++      .+.+||+.+.
T Consensus        78 -----~I~vwd~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~  133 (753)
T 3jro_A           78 -----KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKEN  133 (753)
T ss_dssp             -----CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSS
T ss_pred             -----eEEEEECCCCcccccccc---cCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecC
Confidence                 388899999988766532   222222333333  2  56777777653      5888888765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.97  E-value=0.86  Score=42.51  Aligned_cols=164  Identities=7%  Similarity=-0.037  Sum_probs=77.2

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCC-CcEEEee--cCCCCCCCCcCcEEEEE--CC-EEEEEcCCCCCCCccCcEEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLET-NLCGVME--TSGKVPVTRGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~--~~g~~p~~r~~~~~~~~--~~-~iy~~GG~~~~~~~~n~~~~~  173 (507)
                      ++.||+.+..      ...+.+||+.+ ++.....  .. ..+... ....+.+  ++ .+|+.+..      .+.+.+|
T Consensus       140 g~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~pdg~~l~~~~~~------~~~i~~~  205 (343)
T 1ri6_A          140 NRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGA-GPRHMVFHPNEQYAYCVNEL------NSSVDVW  205 (343)
T ss_dssp             SSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTC-CEEEEEECTTSSEEEEEETT------TTEEEEE
T ss_pred             CCEEEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCC-CcceEEECCCCCEEEEEeCC------CCEEEEE
Confidence            3467766522      23588999887 7665432  11 111111 1112233  33 57766543      2468888


Q ss_pred             ECC--CCcEEEeccCCCCCCC---CCCc-eEEEEc-CCEEEEEcCCCCCCCCCcEEEEECC--CCcEEecccCCCCCCCC
Q 010551          174 DLE--TMTWDAVEVTQTPPAP---RYDH-SAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQ--TNEWSQPEIKGDLVTGR  244 (507)
Q Consensus       174 d~~--t~~W~~~~~~~~~p~~---r~~~-~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~--~~~W~~~~~~~~~p~~r  244 (507)
                      |+.  +..+.........+..   .... .++... ++++|+.+..+     +.+.+||+.  ++.+..+...   +...
T Consensus       206 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~~~~~~~~~~~~---~~~~  277 (343)
T 1ri6_A          206 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVLSKEGFQ---PTET  277 (343)
T ss_dssp             ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCEEEEEEE---ECSS
T ss_pred             EecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----CEEEEEEEcCCCCceEEeeee---cCCC
Confidence            884  4555433221112221   1111 233333 34666655322     468888887  5555554221   1111


Q ss_pred             CccEEEEE-CCe-EEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551          245 AGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       245 ~~~~~~~~-~~~-l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~  288 (507)
                      ....++.. +++ +|+.++.+   ..-.+|.+|..+..++.+..++
T Consensus       278 ~~~~~~~s~dg~~l~~~~~~~---~~v~v~~~d~~~g~~~~~~~~~  320 (343)
T 1ri6_A          278 QPRGFNVDHSGKYLIAAGQKS---HHISVYEIVGEQGLLHEKGRYA  320 (343)
T ss_dssp             SCCCEEECTTSSEEEEECTTT---CEEEEEEEETTTTEEEEEEEEE
T ss_pred             ccceEEECCCCCEEEEecCCC---CeEEEEEEcCCCceeeEccccc
Confidence            11122322 344 55543222   2233555688888888776543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.96  E-value=0.13  Score=39.20  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=37.0

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH----
Q 010551          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS----  464 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~----  464 (507)
                      ..+..|+.++..........       +..+...+....+.+.++..++..++.++..+.+.+..+.+...++...    
T Consensus         9 kKm~~lk~e~e~a~drae~~-------e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~   81 (101)
T 3u1c_A            9 KKMQMLKLDKENALDRAEQA-------EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555555555544433333       3333333333333333344434444433333333333333333333322    


Q ss_pred             HHHHHHHHHHHHhHHHHH
Q 010551          465 QTIENEVQILRQQKSAFE  482 (507)
Q Consensus       465 ~~le~e~~~~~~~~~~~~  482 (507)
                      .+.+.++.-+.++++.++
T Consensus        82 ~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           82 AKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            244445666666555544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.96  E-value=1.2  Score=46.08  Aligned_cols=128  Identities=17%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEc-cCCc--eeeeccccccCCCccccCCCcCCCCCc---cceeEEE--ECCE
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSLA--WSNLRLETELDADKTEDSGLLEVLPPM---SDHCMVK--WGTK  102 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~-~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r---~~~~~~~--~~~~  102 (507)
                      .+.++.++.||+.+..     .+.++.||. .+++  |+.-......           ..+..+   ...+.++  .++.
T Consensus        56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~-----------~~~~~~~~~~~~g~av~p~~g~  119 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPA-----------ARAVACCDLVNRGLAYWPGDGK  119 (599)
T ss_dssp             SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG-----------GGGGCSSCSCCCCCEEECCCSS
T ss_pred             eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCcc-----------ccccccccccccceEEEecCCc
Confidence            4556679999998752     246999999 7774  8764432110           000011   1123344  4666


Q ss_pred             ----EEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCC-CcCcEEEEECCEEEEEcCCCCCCCccCcEEEEEC
Q 010551          103 ----LLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVT-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       103 ----lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~  175 (507)
                          ||+...       ...++.+|..|++  |+.-..  ..... ....+-++.++.+|+-.+.. .......++.||.
T Consensus       120 ~~~rV~v~t~-------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~g~-e~g~~g~v~A~D~  189 (599)
T 1w6s_A          120 TPALILKTQL-------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSSGA-ELGVRGYLTAYDV  189 (599)
T ss_dssp             SCCEEEEECT-------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCBCG-GGTCCCEEEEEET
T ss_pred             ceeEEEEEcC-------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEECCEEEEEeccc-ccCCCCeEEEEEC
Confidence                777532       2359999999886  876431  11111 11223345688776533211 1112457999999


Q ss_pred             CCCc--EEEec
Q 010551          176 ETMT--WDAVE  184 (507)
Q Consensus       176 ~t~~--W~~~~  184 (507)
                      .+++  |+.-.
T Consensus       190 ~TG~~~W~~~~  200 (599)
T 1w6s_A          190 KTGEQVWRAYA  200 (599)
T ss_dssp             TTCCEEEEEES
T ss_pred             CCCcEEEEEcC
Confidence            8875  87654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.96  E-value=0.55  Score=50.31  Aligned_cols=188  Identities=14%  Similarity=0.059  Sum_probs=92.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++..++.|+.+     ..+.+||..++.........                  ......+.+  ++..++.|+.+    
T Consensus        66 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~d----  118 (814)
T 3mkq_A           66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEAH------------------PDYIRSIAVHPTKPYVLSGSDD----  118 (814)
T ss_dssp             GGTEEEEEETT-----SEEEEEETTTCCEEEEEECC------------------SSCEEEEEECSSSSEEEEEETT----
T ss_pred             CCCEEEEEeCC-----CeEEEEECCCCcEEEEEecC------------------CCCEEEEEEeCCCCEEEEEcCC----
Confidence            45556666542     46899999887654332211                  111122222  44455555532    


Q ss_pred             CcceEEEEECCCC-cEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          115 DSMIVRFIDLETN-LCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                        ..+.+||..++ ....... +   ....-.+++..  ++.+++.|+.++      .+.+||+.+..-......   ..
T Consensus       119 --g~i~vw~~~~~~~~~~~~~-~---~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~~---~~  183 (814)
T 3mkq_A          119 --LTVKLWNWENNWALEQTFE-G---HEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLTT---GQ  183 (814)
T ss_dssp             --SEEEEEEGGGTSEEEEEEE-C---CSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEEC---CC
T ss_pred             --CEEEEEECCCCceEEEEEc-C---CCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEec---CC
Confidence              34888898776 3322221 1   11111222333  346777777653      588999866542222111   11


Q ss_pred             CCCCceEEEEc--CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCC
Q 010551          192 PRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNG  267 (507)
Q Consensus       192 ~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~  267 (507)
                      ......++...  ++.+++.|+.+     ..+.+||+.++.-...-. +    .......+.+  ++.+++.|+.++   
T Consensus       184 ~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~~~~~dg---  250 (814)
T 3mkq_A          184 ERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATLE-G----HMSNVSFAVFHPTLPIIISGSEDG---  250 (814)
T ss_dssp             TTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEEEE-C----CSSCEEEEEECSSSSEEEEEETTS---
T ss_pred             CCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEEEc-C----CCCCEEEEEEcCCCCEEEEEeCCC---
Confidence            12222233332  45467777654     368899988766433210 1    1111122222  345677776443   


Q ss_pred             cceEEEEECCCCcE
Q 010551          268 CQETIVLNMTKLAW  281 (507)
Q Consensus       268 ~~~~~~~d~~~~~W  281 (507)
                        .+.+||+.+..-
T Consensus       251 --~v~vwd~~~~~~  262 (814)
T 3mkq_A          251 --TLKIWNSSTYKV  262 (814)
T ss_dssp             --CEEEEETTTCSE
T ss_pred             --eEEEEECCCCcE
Confidence              377888876543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.92  E-value=0.55  Score=50.18  Aligned_cols=186  Identities=12%  Similarity=0.066  Sum_probs=94.8

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCC-c-cccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCC------cee---eecc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPS-P-RYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSL------AWS---NLRL   70 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~-~-r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~------~W~---~~~~   70 (507)
                      .|+++||+.+++++.......... + ..-++++.- ++.|+|- ...     ..+++||+.+.      .+.   ....
T Consensus       392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig-T~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~  465 (758)
T 3ott_A          392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIS-TCL-----GGIFVVDKHKLMQSTSGQYIAEQNYSV  465 (758)
T ss_dssp             TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEE-ESS-----SCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred             CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEE-ECC-----CceEEEccccccccCCcceeccccccc
Confidence            478899999999987753111111 1 111222222 4677763 211     24889987641      121   0010


Q ss_pred             ccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE
Q 010551           71 ETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL  149 (507)
Q Consensus        71 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~  149 (507)
                      ..             + .+...-.+++.- ++.|+++||...      -+++||+.+++++.+... ..+. .....+..
T Consensus       466 ~~-------------~-l~~~~i~~i~~d~~g~lWi~~~t~~------Gl~~~d~~~~~~~~~~~~-~~~~-~~~~~~i~  523 (758)
T 3ott_A          466 HN-------------G-LSGMFINQIIPDNEGNVWVLLYNNK------GIDKINPRTREVTKLFAD-ELTG-EKSPNYLL  523 (758)
T ss_dssp             GG-------------T-CSCSCEEEEEECTTSCEEEEETTCS------SEEEEETTTTEEEEECTT-TSCG-GGCEEEEE
T ss_pred             cc-------------c-cccceeeeEEEcCCCCEEEEccCCC------CcEEEeCCCCceEEecCC-CcCC-CcccceEE
Confidence            00             1 111111222222 467888666432      289999999999887421 1111 11222333


Q ss_pred             E--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC
Q 010551          150 V--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       150 ~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~  227 (507)
                      .  ++.|++ |..       +-+.+||+.+.++..... ..+|. ...++++ .+++.|++...       +-+.+||+.
T Consensus       524 ~d~~g~lWi-gt~-------~Gl~~~~~~~~~~~~~~~-~gl~~-~~i~~i~-~~~g~lWi~t~-------~Gl~~~~~~  585 (758)
T 3ott_A          524 CDEDGLLWV-GFH-------GGVMRINPKDESQQSISF-GSFSN-NEILSMT-CVKNSIWVSTT-------NGLWIIDRK  585 (758)
T ss_dssp             ECTTSCEEE-EET-------TEEEEECC--CCCCBCCC-CC----CCEEEEE-EETTEEEEEES-------SCEEEEETT
T ss_pred             ECCCCCEEE-Eec-------CceEEEecCCCceEEecc-cCCCc-cceEEEE-ECCCCEEEECC-------CCeEEEcCC
Confidence            3  357775 332       238999998888766542 22332 2222333 34676777442       358999999


Q ss_pred             CCcEEec
Q 010551          228 TNEWSQP  234 (507)
Q Consensus       228 ~~~W~~~  234 (507)
                      +.+....
T Consensus       586 ~~~~~~~  592 (758)
T 3ott_A          586 TMDARQQ  592 (758)
T ss_dssp             TCCEEEC
T ss_pred             CceeEEe
Confidence            9887753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=95.92  E-value=0.5  Score=50.04  Aligned_cols=223  Identities=10%  Similarity=0.042  Sum_probs=106.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      |+.+|.+-- ..+.....+|+.+...+.|+.+-.....          ..  ..........+  +++.++++.......
T Consensus        83 G~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lld~~~l----------~~--~~~~~~~~~~~SPDg~~la~~~~~~G~~  149 (710)
T 2xdw_A           83 GKRYFYFYN-TGLQNQRVLYVQDSLEGEARVFLDPNIL----------SD--DGTVALRGYAFSEDGEYFAYGLSASGSD  149 (710)
T ss_dssp             TTEEEEEEE-CSSCSSCEEEEESSTTSCCEEEECGGGG----------CT--TSCEEEEEEEECTTSSEEEEEEEETTCS
T ss_pred             CCEEEEEEE-cCCceEEEEEEEcCCCCCcEEEECHHHh----------cc--CCCEEEEEEEECCCCCEEEEEEcCCCCc
Confidence            555554421 1223345678887777777655322110          00  00111122222  455555544332221


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCC----------CCccCcEEEEECCCCcEE--
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRS----------RKLLNDVHFLDLETMTWD--  181 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~----------~~~~n~~~~~d~~t~~W~--  181 (507)
                       ...++++|+.++........+    .. ....+.. +++.++++..+..          ......++++++.+....  
T Consensus       150 -~~~i~v~d~~tg~~~~~~~~~----~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~  223 (710)
T 2xdw_A          150 -WVTIKFMKVDGAKELPDVLER----VK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI  223 (710)
T ss_dssp             -CEEEEEEETTTTEEEEEEEEE----EC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred             -eEEEEEEECCCCCCCcccccC----cc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce
Confidence             346999999999887643211    11 1122222 4444444433221          123456999999887642  


Q ss_pred             EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC------C--cEEecccCCCCCCCCCccEEEEEC
Q 010551          182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------N--EWSQPEIKGDLVTGRAGHAGITID  253 (507)
Q Consensus       182 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~------~--~W~~~~~~~~~p~~r~~~~~~~~~  253 (507)
                      .+..  ....+........-.++..+++.........++++++|+.+      .  .+..+...    ...........+
T Consensus       224 ~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~dg  297 (710)
T 2xdw_A          224 LCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN----FEGEYDYVTNEG  297 (710)
T ss_dssp             EEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS----SSSCEEEEEEET
T ss_pred             EEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC----CCcEEEEEeccC
Confidence            2211  11112222233333444344443322222257899999876      4  56665321    111111222335


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCCC---cEEEecc
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTKL---AWSILTS  286 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~~---~W~~v~~  286 (507)
                      +.+|+.+...  .....++++|+.+.   .|+.+..
T Consensus       298 ~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          298 TVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             TEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             CEEEEEECCC--CCCCEEEEEeCCCCCcccceeccC
Confidence            6777775432  22457999998875   5887743

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.91  E-value=0.23  Score=47.61  Aligned_cols=139  Identities=14%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCc-eeeeccccccCCCc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLA-WSNLRLETELDADK   78 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~~~~~~~~   78 (507)
                      |..+.+||+....|..+..   .......-.++..  ++.+++.|+.+     ..+.+||+.++. |.........    
T Consensus        32 d~~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~~~~~----   99 (377)
T 3dwl_C           32 TNQVELYEQDGNGWKHART---FSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRPDGTWKQTLVLLRL----   99 (377)
T ss_dssp             SSCBCEEEEETTEEEECCC---BCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC------CCCCEEECCCC----
T ss_pred             CCEEEEEEccCCceEEEEE---EecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEeccc----
Confidence            4557778888877776653   2222222222222  45666777643     358899998876 5544332210    


Q ss_pred             cccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEE--CCE
Q 010551           79 TEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLV--GSR  153 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~  153 (507)
                                  ......+.+  ++.+++.|+.+.      .+.+||+.++. |...... ..+. .....++.+  ++.
T Consensus       100 ------------~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~  159 (377)
T 3dwl_C          100 ------------NRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHL-KRPL-RSTILSLDWHPNNV  159 (377)
T ss_dssp             ------------SSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEE-CSSC-CSCEEEEEECTTSS
T ss_pred             ------------CCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEe-eccc-CCCeEEEEEcCCCC
Confidence                        111222222  455666666432      37788887764 3222210 1111 112223333  456


Q ss_pred             EEEEcCCCCCCCccCcEEEEECCCC
Q 010551          154 LIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       154 iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +++.|+.++      .+.+||+.+.
T Consensus       160 ~l~~~~~d~------~i~iwd~~~~  178 (377)
T 3dwl_C          160 LLAAGCADR------KAYVLSAYVR  178 (377)
T ss_dssp             EEEEEESSS------CEEEEEECCS
T ss_pred             EEEEEeCCC------EEEEEEEEec
Confidence            777777653      4888887543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.91  E-value=1.1  Score=41.51  Aligned_cols=247  Identities=11%  Similarity=0.034  Sum_probs=117.3

Q ss_pred             CCEEEEEcCCC--CCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-C-CEEEEEeccCCC
Q 010551           37 DQKLYIVGGSR--NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~iyi~GG~~--~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~  112 (507)
                      ++.||+..+..  .+.....+++||+.++.+..+.....            . .....-++++.. + ++||+....   
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~-~~~~~~~~i~~~~~~g~l~v~~~~---   91 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------------N-GYGGIPAGCQCDRDANQLFVADMR---   91 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------------T-TEECCEEEEEECSSSSEEEEEETT---
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc------------C-CCCCCCceEEEecCCCcEEEEECC---
Confidence            56788871100  01123469999998888876543100            0 000111233332 4 688887541   


Q ss_pred             CCCcceEEEEECCCCcEEEe-ecCCCCCCCCcCcEEEEE--CCEEEEEcCCC---------CCCCccCcEEEEECCCCcE
Q 010551          113 SSDSMIVRFIDLETNLCGVM-ETSGKVPVTRGGHSVTLV--GSRLIIFGGED---------RSRKLLNDVHFLDLETMTW  180 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~-~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~---------~~~~~~n~~~~~d~~t~~W  180 (507)
                          ..+++||+. ++...+ ... ....+......+.+  ++.+|+....+         ......+.+++||+. .+.
T Consensus        92 ----~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           92 ----LGLLVVQTD-GTFEEIAKKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             ----TEEEEEETT-SCEEECCSBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             ----CCEEEEeCC-CCEEEEEecc-CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence                259999998 877655 321 11111111222333  45787765432         111123569999987 665


Q ss_pred             EEeccCCCCCCCCCCceEEEE----cCC-EEEEEcCCCCCCCCCcEEEEECC-CCcEEecccCCCCCCC--CCccEEEEE
Q 010551          181 DAVEVTQTPPAPRYDHSAALH----ANR-YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTG--RAGHAGITI  252 (507)
Q Consensus       181 ~~~~~~~~~p~~r~~~~~~~~----~~~-~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~--r~~~~~~~~  252 (507)
                      ..+.....     ....++..    .++ .+|+....     .+.+++||+. ++...........+..  .....++..
T Consensus       165 ~~~~~~~~-----~~~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          165 IQVDTAFQ-----FPNGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             EEEEEEES-----SEEEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             EEeccCCC-----CcceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence            54422101     11233334    444 46665432     2468899876 4444321111111111  111223332


Q ss_pred             -CCeEEEEeccCCCCCcceEEEEECCCCcE-EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEEC
Q 010551          253 -DENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~~~~~~d~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~  330 (507)
                       ++++||.....     ..+.+||+.+... ..+. .+.       ....+.+..+....||+....    .+.+++|++
T Consensus       235 ~~G~l~v~~~~~-----~~i~~~d~~~g~~~~~~~-~~~-------~~~~~i~~~~dg~~l~v~~~~----~~~l~~~~~  297 (314)
T 1pjx_A          235 EDNNLLVANWGS-----SHIEVFGPDGGQPKMRIR-CPF-------EKPSNLHFKPQTKTIFVTEHE----NNAVWKFEW  297 (314)
T ss_dssp             TTCCEEEEEETT-----TEEEEECTTCBSCSEEEE-CSS-------SCEEEEEECTTSSEEEEEETT----TTEEEEEEC
T ss_pred             CCCCEEEEEcCC-----CEEEEEcCCCCcEeEEEe-CCC-------CCceeEEECCCCCEEEEEeCC----CCeEEEEeC
Confidence             46777764321     2588899875432 2222 211       112222232334457765432    257889998


Q ss_pred             CCC
Q 010551          331 KPR  333 (507)
Q Consensus       331 ~~~  333 (507)
                      ...
T Consensus       298 ~~~  300 (314)
T 1pjx_A          298 QRN  300 (314)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.90  E-value=0.81  Score=43.91  Aligned_cols=155  Identities=6%  Similarity=0.007  Sum_probs=74.8

Q ss_pred             EEEEEeccCCCCCCcceEEEEECCCCc------EEEeecCCCCCCC--CcC-cEEEEE-----CCEE-EEEcCCCCCCCc
Q 010551          102 KLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVPVT--RGG-HSVTLV-----GSRL-IIFGGEDRSRKL  166 (507)
Q Consensus       102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~------W~~~~~~g~~p~~--r~~-~~~~~~-----~~~i-y~~GG~~~~~~~  166 (507)
                      .+++.|+.+.      .+.+||+.++.      +..+..   .+..  ... .+++..     ++.. ++.|+.+     
T Consensus        82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----  147 (397)
T 1sq9_A           82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----  147 (397)
T ss_dssp             EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETT-----
T ss_pred             cEEEEEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----
Confidence            6777776532      37888877776      555541   1100  111 223333     3455 7777754     


Q ss_pred             cCcEEEEECCC------Cc---EE---Eecc--CCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          167 LNDVHFLDLET------MT---WD---AVEV--TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       167 ~n~~~~~d~~t------~~---W~---~~~~--~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                       +.+.+||+.+      ..   |.   .+..  ...........++....++ +++.|+.+     ..+.+||+.+....
T Consensus       148 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~  220 (397)
T 1sq9_A          148 -GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPL  220 (397)
T ss_dssp             -SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEE
T ss_pred             -CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCcee
Confidence             3477887765      22   11   1110  0000112223344445566 77777654     36899999877644


Q ss_pred             ecccCCC--C-CCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          233 QPEIKGD--L-VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       233 ~~~~~~~--~-p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ..-. ..  . +....-.+++.. ++.+++.|+.++  ....+.+||+.+..
T Consensus       221 ~~~~-~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          221 YNFE-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGE  269 (397)
T ss_dssp             EEEE-CCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCC
T ss_pred             EEEe-ccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCc
Confidence            3211 10  0 001111222222 456777766431  11358899987764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.89  E-value=1.1  Score=41.38  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCcccc-ceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCcee
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYK-HAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWS   66 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~   66 (507)
                      |..+.++|+.+.+-..+-.   ....... .+++.. ++..++.|+.+     ..+.++|..++.-.
T Consensus        44 D~tV~iWd~~tg~~~~~~~---~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~~  102 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRL  102 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCCEEEEEE---ecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCceeE
Confidence            4556777888777665432   1111111 122222 55667777644     35888998887543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.88  E-value=0.79  Score=43.62  Aligned_cols=185  Identities=11%  Similarity=0.081  Sum_probs=88.5

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      ++..++.|+.+.      .+.++|+.+++-...- .|    -.....++.+   +..+++.|+.+.      .+.++|+.
T Consensus       138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-~~----h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~  200 (344)
T 4gqb_B          138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-RA----HAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTR  200 (344)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC----CSSCEEEEEECSSCTTEEEEEETTS------CEEEEETT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE-cC----cCCceEEEEecCCCCCceeeecccc------cccccccc
Confidence            566666676543      3889999888643321 11    1111222333   235777777653      48899998


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  252 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  252 (507)
                      +.+-...-.   ..........+.+  .+..+++.|+.+     ..+.+||+.+++-...     .......-..+.+  
T Consensus       201 ~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~~~~-----~~~h~~~v~~v~fsp  267 (344)
T 4gqb_B          201 CPKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSCVLS-----SAVHSQCVTGLVFSP  267 (344)
T ss_dssp             SSSCEEECC-------CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--CCEE-----EECCSSCEEEEEECS
T ss_pred             ccceeeeee---cceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcEEEE-----EcCCCCCEEEEEEcc
Confidence            776433211   0111111122222  244577777654     3588899876542211     0011111122223  


Q ss_pred             C-CeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          253 D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       253 ~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      + .++++.|+.++     .+.++|..+..-..+....        +...++...+.+..|++.||.++    .+..+++.
T Consensus       268 ~g~~~lasgs~D~-----~i~vwd~~~~~~~~~~~H~--------~~V~~v~~sp~~~~llas~s~D~----~v~~w~v~  330 (344)
T 4gqb_B          268 HSVPFLASLSEDC-----SLAVLDSSLSELFRSQAHR--------DFVRDATWSPLNHSLLTTVGWDH----QVVHHVVP  330 (344)
T ss_dssp             SSSCCEEEEETTS-----CEEEECTTCCEEEEECCCS--------SCEEEEEECSSSTTEEEEEETTS----CEEEEECC
T ss_pred             CCCeEEEEEeCCC-----eEEEEECCCCcEEEEcCCC--------CCEEEEEEeCCCCeEEEEEcCCC----eEEEEECC
Confidence            2 35666666443     3778888877533321110        11222222233446777788764    34455543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.87  E-value=1.4  Score=45.39  Aligned_cols=110  Identities=12%  Similarity=0.094  Sum_probs=60.8

Q ss_pred             CCCeEeeC-CCC--ceEEeecCCCCCCc-----cccceEEEECCEEEEEcCCCCCccCCceEEEEccCC--ceeeecccc
Q 010551            3 SGSWHLEL-PYD--LWVTLPVSGARPSP-----RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLET   72 (507)
Q Consensus         3 ~~~~~~d~-~~~--~W~~~~~~~~~p~~-----r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~   72 (507)
                      ..++++|. .+.  .|+.-........+     ....+.++.++.||+...      ...++.+|..++  .|+.-....
T Consensus        73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~  146 (571)
T 2ad6_A           73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLALDAKTGKINWEVEVCDP  146 (571)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCCG
T ss_pred             CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEEEECCCCCEEEEecCCCC
Confidence            34788998 554  68875421100000     112344566889988753      246999999887  486532211


Q ss_pred             ccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEee
Q 010551           73 ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVME  133 (507)
Q Consensus        73 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~  133 (507)
                      .              .......+.++.++.||+-.+.... .....++.||+.|++  |+.-.
T Consensus       147 ~--------------~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          147 K--------------VGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             G--------------GTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEES
T ss_pred             C--------------ccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEcc
Confidence            0              0001122334568888775432111 113469999999885  87543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.85  E-value=0.1  Score=39.85  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=10.3

Q ss_pred             HhhHHHhhhhhhhhHHHHHHHHHHHH
Q 010551          437 QGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      +.++.....+..+.+.++..++++++
T Consensus        29 e~~~k~~e~~~~~~E~Ei~sL~kk~~   54 (101)
T 3u1c_A           29 EADKKAAEERSKQLEDDIVQLEKQLR   54 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33333333333444444444444433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.82  E-value=1.1  Score=40.95  Aligned_cols=218  Identities=9%  Similarity=-0.005  Sum_probs=111.5

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+..||+. .+...++...   .....+++++- ++.||+....     ...++.||+. +.+.......          
T Consensus        42 ~v~~~~~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~----------  101 (300)
T 2qc5_A           42 KISSLDQS-GRIKEFEVPT---PDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQ----------  101 (300)
T ss_dssp             EEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSS----------
T ss_pred             eEEEECCC-CceEEEECCC---CCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCeEEecCCC----------
Confidence            45677777 6776655311   11222333333 5678886532     2458999988 6765443211          


Q ss_pred             CCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcC
Q 010551           83 GLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGG  159 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG  159 (507)
                            ....-++++.. ++.+|+....      ...++.||+. ++......    +..........+  ++++|+...
T Consensus       102 ------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A          102 ------PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDL----PNKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             ------TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEEC----SSTTCCEEEEEECTTSSEEEEET
T ss_pred             ------CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccC----CCCCCCceeEEECCCCCEEEEec
Confidence                  01112333333 5778876432      2358999988 76665432    211112222333  356776543


Q ss_pred             CCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCC
Q 010551          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       160 ~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      .      .+.+++||+ +++...+...+..   ..-.+++.-.++.+|+....     .+.+++||+ ++.+.....   
T Consensus       165 ~------~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~---  225 (300)
T 2qc5_A          165 Q------NNSIGRITN-TGKLEEYPLPTNA---AAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDI---  225 (300)
T ss_dssp             T------TTEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC---
T ss_pred             C------CCeEEEECC-CCcEEEeeCCCCC---CCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEEC---
Confidence            2      246899998 6777665431111   11123333335557775432     236889998 566655321   


Q ss_pred             CCCCCCc-cEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEe
Q 010551          240 LVTGRAG-HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       240 ~p~~r~~-~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v  284 (507)
                       +..... ++++.- ++++|+....     .+.+.+||+ +......
T Consensus       226 -~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~  265 (300)
T 2qc5_A          226 -PTPNARPHAITAGKNSEIWFTEWG-----ANQIGRITN-DNTIQEY  265 (300)
T ss_dssp             -SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-TSCEEEE
T ss_pred             -CCCCCCceEEEECCCCCEEEeccC-----CCeEEEECC-CCcEEEE
Confidence             111112 233332 4577776421     235888988 4555544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.81  E-value=0.67  Score=45.25  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=36.0

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++..++.|+.+      ..+.+||+.++.-...-. +.    .....++.+  ++.+++.|+.++      .+.++|+.+
T Consensus       203 ~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~h----~~~v~~~~~~~~g~~l~s~s~D~------~v~vwd~~~  265 (410)
T 1vyh_C          203 NGDHIVSASRD------KTIKMWEVQTGYCVKTFT-GH----REWVRMVRPNQDGTLIASCSNDQ------TVRVWVVAT  265 (410)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTCCEEEEEE-CC----SSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEe-CC----CccEEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence            45556666643      348899998886433211 11    111222233  456777777653      478888877


Q ss_pred             CcEE
Q 010551          178 MTWD  181 (507)
Q Consensus       178 ~~W~  181 (507)
                      ....
T Consensus       266 ~~~~  269 (410)
T 1vyh_C          266 KECK  269 (410)
T ss_dssp             CCEE
T ss_pred             Ccee
Confidence            6543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.76  E-value=0.32  Score=46.24  Aligned_cols=139  Identities=9%  Similarity=0.031  Sum_probs=68.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|..+..+..+......                ......+.+  ++.+++.|+.+.   
T Consensus        72 ~g~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~h----------------~~~v~~v~~sp~~~~l~s~s~D~---  127 (345)
T 3fm0_A           72 CGNYLASASFD-----ATTCIWKKNQDDFECVTTLEGH----------------ENEVKSVAWAPSGNLLATCSRDK---  127 (345)
T ss_dssp             TSSEEEEEETT-----SCEEEEEECCC-EEEEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS---
T ss_pred             CCCEEEEEECC-----CcEEEEEccCCCeEEEEEccCC----------------CCCceEEEEeCCCCEEEEEECCC---
Confidence            45666677644     3577888877776554433210                111222333  456667776542   


Q ss_pred             CcceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          115 DSMIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                         .+.+||+.+.. +..+...   ........++.+  ++.+++.|+.+.      .+.+||..+..|..+......  
T Consensus       128 ---~v~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~h--  193 (345)
T 3fm0_A          128 ---SVWVWEVDEEDEYECVSVL---NSHTQDVKHVVWHPSQELLASASYDD------TVKLYREEEDDWVCCATLEGH--  193 (345)
T ss_dssp             ---CEEEEEECTTSCEEEEEEE---CCCCSCEEEEEECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECCC--
T ss_pred             ---eEEEEECCCCCCeEEEEEe---cCcCCCeEEEEECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecCC--
Confidence               37788876653 3332211   111111222333  456667777653      488888888887654321110  


Q ss_pred             CCCCceEEEEcCCEEEEEcCCC
Q 010551          192 PRYDHSAALHANRYLIVFGGCS  213 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~  213 (507)
                      ...-.+++...++.+++.|+.+
T Consensus       194 ~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          194 ESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEEECCCCCEEEEEeCC
Confidence            1111222333445566677654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.75  E-value=2.4  Score=44.48  Aligned_cols=194  Identities=14%  Similarity=0.022  Sum_probs=96.3

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCC-cE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETN-LC  129 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W  129 (507)
                      ..++++|+.++.-..+....                ........+.+  +++.++++..+... ....++.+|+.++ ..
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~  297 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGE----------------PKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFV  297 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCS----------------CTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEE
T ss_pred             eEEEEEECCCCceEeeccCC----------------CCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCcee
Confidence            56899999887654443211                01112222333  44444444333222 2567999999998 77


Q ss_pred             EEeecCCCCC-CCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE--cCC
Q 010551          130 GVMETSGKVP-VTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH--ANR  204 (507)
Q Consensus       130 ~~~~~~g~~p-~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~  204 (507)
                      ..+....... .......+..-  ++++++.+..++    ...++.+|........+.. +    .........+  +++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~-~----~~~v~~~~~~spdg~  368 (706)
T 2z3z_A          298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTK-G----EWEVTNFAGFDPKGT  368 (706)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCC-S----SSCEEEEEEECTTSS
T ss_pred             eEEEEccCCCeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCC-C----CeEEEeeeEEcCCCC
Confidence            6654211110 00001112222  567665555442    4568888877666666632 1    1111111222  234


Q ss_pred             EEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       205 ~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .||+.+.. .......+|.+|+.++....+..      ....++++.. +++.+++.... ......++++|+.+..
T Consensus       369 ~l~~~~~~-~~~~~~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~-~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          369 RLYFESTE-ASPLERHFYCIDIKGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQS-PTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEESS-SCTTCBEEEEEETTCCCCEESCC------SSSEEEEEECTTSSEEEEEEEC-SSCSCEEEEEESSSCE
T ss_pred             EEEEEecC-CCCceEEEEEEEcCCCCceeccC------CCceEEEEECCCCCEEEEEecC-CCCCcEEEEEECCCCe
Confidence            45554443 32233579999998877655421      1112232222 44555554322 2234568899988776

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.72  E-value=0.78  Score=42.47  Aligned_cols=199  Identities=8%  Similarity=-0.041  Sum_probs=97.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      ++.||+....     ...++.||+.++........                  .+..+.+..-++++|+..        .
T Consensus        24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~------------------~~~~~i~~~~dG~l~v~~--------~   72 (297)
T 3g4e_A           24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTMD------------------APVSSVALRQSGGYVATI--------G   72 (297)
T ss_dssp             TTEEEEEETT-----TTEEEEEETTTCCEEEEECS------------------SCEEEEEEBTTSSEEEEE--------T
T ss_pred             CCEEEEEECC-----CCEEEEEECCCCcEEEEeCC------------------CceEEEEECCCCCEEEEE--------C
Confidence            4678887642     24689999998765443221                  121222222255665542        2


Q ss_pred             ceEEEEECCCCcEEEeecCCC-CCCCCcCcEEEEECCEEEEEcCCCCC------CCccCcEEEEECCCCcEEEeccCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGK-VPVTRGGHSVTLVGSRLIIFGGEDRS------RKLLNDVHFLDLETMTWDAVEVTQTP  189 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~-~p~~r~~~~~~~~~~~iy~~GG~~~~------~~~~n~~~~~d~~t~~W~~~~~~~~~  189 (507)
                      ..+++||+.+++++.+..... .+..+....++.-++++|+- .....      ......++++|+. .+...+...  .
T Consensus        73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~--~  148 (297)
T 3g4e_A           73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ--V  148 (297)
T ss_dssp             TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE--E
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECC-CCEEEEeec--c
Confidence            359999999999887753211 11112211122224576653 22111      0123568888875 333333211  1


Q ss_pred             CCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEEC--CCCcEEecccCCCCCC-CCCccEEEEE-CCeEEEEeccCC
Q 010551          190 PAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDL--QTNEWSQPEIKGDLVT-GRAGHAGITI-DENWYIVGGGDN  264 (507)
Q Consensus       190 p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~--~~~~W~~~~~~~~~p~-~r~~~~~~~~-~~~l~v~GG~~~  264 (507)
                         ....+++... ++.+|+....     .+.|++||+  .++...........+. ......+++- ++++||..... 
T Consensus       149 ---~~pngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-  219 (297)
T 3g4e_A          149 ---DISNGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-  219 (297)
T ss_dssp             ---SBEEEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-
T ss_pred             ---ccccceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-
Confidence               1112333333 4457776442     246888886  4555432111011111 1111233332 46788764211 


Q ss_pred             CCCcceEEEEECCCCcEEE
Q 010551          265 NNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       265 ~~~~~~~~~~d~~~~~W~~  283 (507)
                          ..+++||+.+.....
T Consensus       220 ----~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          220 ----GRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             ----TEEEEECTTTCCEEE
T ss_pred             ----CEEEEEcCCCceEEE
Confidence                258899998766543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.71  E-value=0.78  Score=43.96  Aligned_cols=201  Identities=12%  Similarity=0.017  Sum_probs=96.7

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECC-EEEEEeccCCCCCCcceEEEEECCCCcEEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~  131 (507)
                      ..++++|+.++.-..+......               .... ....-++ .|++...       ...++.+|+.++.-..
T Consensus        60 ~~l~~~d~~~g~~~~lt~~~~~---------------~~~~-~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           60 WNYYLLDLNTQVATQLTEGRGD---------------NTFG-GFLSPDDDALFYVKD-------GRNLMRVDLATLEENV  116 (388)
T ss_dssp             CEEEEEETTTCEEEECCCSSCB---------------CSSS-CEECTTSSEEEEEET-------TTEEEEEETTTCCEEE
T ss_pred             ceEEEEeCCCCceEEeeeCCCC---------------Cccc-eEEcCCCCEEEEEeC-------CCeEEEEECCCCccee
Confidence            4699999998877665432210               1111 1122234 4544432       1369999999988666


Q ss_pred             eecCCCCCCCCcCcEEEEE--CCEEEE-Ec--CCCC-------------CCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          132 METSGKVPVTRGGHSVTLV--GSRLII-FG--GEDR-------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~--~~~iy~-~G--G~~~-------------~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                      +.   ..|...........  ++..++ +-  +.+.             .......++.+|+.+++-..+....    ..
T Consensus       117 ~~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~  189 (388)
T 3pe7_A          117 VY---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN----QW  189 (388)
T ss_dssp             EE---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES----SC
T ss_pred             ee---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC----cc
Confidence            54   23332221121222  233222 11  0000             0112367999999988766664311    11


Q ss_pred             CCceEEEEc-CCEEEEEcCCCC-CCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcc
Q 010551          194 YDHSAALHA-NRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       194 ~~~~~~~~~-~~~l~v~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  269 (507)
                       ........ ++..+++..... ......+|.+|+.+.....+..   ...... ......  +++.+++..........
T Consensus       190 -~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~  264 (388)
T 3pe7_A          190 -LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGES-CTHEFWVPDGSALVYVSYLKGSPDR  264 (388)
T ss_dssp             -EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEE-EEEEEECTTSSCEEEEEEETTCCCE
T ss_pred             -ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcc-cccceECCCCCEEEEEecCCCCCcc
Confidence             12223333 444444433221 2234589999998776665521   111001 111222  44433332222222223


Q ss_pred             eEEEEECCCCcEEEeccCC
Q 010551          270 ETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       270 ~~~~~d~~~~~W~~v~~~~  288 (507)
                      .++++|+.+..-+.+...+
T Consensus       265 ~l~~~d~~~g~~~~l~~~~  283 (388)
T 3pe7_A          265 FIYSADPETLENRQLTSMP  283 (388)
T ss_dssp             EEEEECTTTCCEEEEEEEC
T ss_pred             eEEEEecCCCceEEEEcCC
Confidence            5999999998876665443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.69  E-value=1.4  Score=41.27  Aligned_cols=186  Identities=12%  Similarity=0.120  Sum_probs=92.3

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE-ECCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      +.+++.|+.+      ..+.++|+.+++-......+  +..  ..+++. -++..++.|+.+      ..+.+||+.+..
T Consensus        92 ~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~~--~~~--~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~  155 (321)
T 3ow8_A           92 LPIAASSSLD------AHIRLWDLENGKQIKSIDAG--PVD--AWTLAFSPDSQYLATGTHV------GKVNIFGVESGK  155 (321)
T ss_dssp             SSEEEEEETT------SEEEEEETTTTEEEEEEECC--TTC--CCCEEECTTSSEEEEECTT------SEEEEEETTTCS
T ss_pred             CCEEEEEeCC------CcEEEEECCCCCEEEEEeCC--Ccc--EEEEEECCCCCEEEEEcCC------CcEEEEEcCCCc
Confidence            4455555543      34888999888654332211  111  112222 245666777654      358888987765


Q ss_pred             EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEE
Q 010551          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYI  258 (507)
Q Consensus       180 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v  258 (507)
                      -...-.    .......+++...++.+++.|+.+     ..+.+||+.+++-...- .+.   ...-.+++.. ++.+++
T Consensus       156 ~~~~~~----~~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~-~~h---~~~v~~l~~spd~~~l~  222 (321)
T 3ow8_A          156 KEYSLD----TRGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTL-EGH---AMPIRSLTFSPDSQLLV  222 (321)
T ss_dssp             EEEEEE----CSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE-CCC---SSCCCEEEECTTSCEEE
T ss_pred             eeEEec----CCCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-ccc---CCceeEEEEcCCCCEEE
Confidence            332211    011112233333455577777754     35889999887644321 110   0011122222 456777


Q ss_pred             EeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      .|+.++     .+.+||+.+......  +.+..     .. ...+....+..+++.|+.+    ..+.++|+..
T Consensus       223 s~s~dg-----~i~iwd~~~~~~~~~--~~~h~-----~~-v~~~~~sp~~~~l~s~s~D----~~v~iwd~~~  279 (321)
T 3ow8_A          223 TASDDG-----YIKIYDVQHANLAGT--LSGHA-----SW-VLNVAFCPDDTHFVSSSSD----KSVKVWDVGT  279 (321)
T ss_dssp             EECTTS-----CEEEEETTTCCEEEE--ECCCS-----SC-EEEEEECTTSSEEEEEETT----SCEEEEETTT
T ss_pred             EEcCCC-----eEEEEECCCcceeEE--EcCCC-----Cc-eEEEEECCCCCEEEEEeCC----CcEEEEeCCC
Confidence            776543     377889877654322  21110     11 2222333333455667655    3466677654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.68  E-value=0.027  Score=63.44  Aligned_cols=6  Identities=0%  Similarity=-0.158  Sum_probs=2.7

Q ss_pred             CceEEe
Q 010551           13 DLWVTL   18 (507)
Q Consensus        13 ~~W~~~   18 (507)
                      .-|...
T Consensus        41 ~~~~~~   46 (1184)
T 1i84_S           41 HGFEAA   46 (1184)
T ss_dssp             TSSEEE
T ss_pred             CCeEEE
Confidence            345543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.67  E-value=0.18  Score=47.98  Aligned_cols=185  Identities=9%  Similarity=0.058  Sum_probs=91.0

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++.+++.||.+.      .+.+||..++.|......  ...-.....++.+  ++..++.|+.+.      .+.++|..+
T Consensus        27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVL--SEGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS------CEEEEEEETTEEEEEEEE--CSSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECC
T ss_pred             CCCEEEEEcCCC------eEEEEEcCCCcceeeeee--ccccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccC
Confidence            566777777543      378888888887643311  0011112233333  456777777653      477788777


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc-EEecccCCCCCCCCCccEEEEE--CC
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI--DE  254 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~--~~  254 (507)
                      ..+..+.....  ....-.+++...++.+++.|+.++     .+.++|+.+.. +..+....   ........+..  ++
T Consensus        93 ~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           93 DDFECVTTLEG--HENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVLN---SHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             C-EEEEEEECC--CSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEEC---CCCSCEEEEEECSSS
T ss_pred             CCeEEEEEccC--CCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEec---CcCCCeEEEEECCCC
Confidence            76654432111  011112233334555777777543     57888876542 32221111   11111122222  35


Q ss_pred             eEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCC
Q 010551          255 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       255 ~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                      .+++.|+.++     .+.+||..+..|..+..+.+..     . ....+....+..+++.|+.++
T Consensus       163 ~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~h~-----~-~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          163 ELLASASYDD-----TVKLYREEEDDWVCCATLEGHE-----S-TVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             SCEEEEETTS-----CEEEEEEETTEEEEEEEECCCS-----S-CEEEEEECTTSSEEEEEETTS
T ss_pred             CEEEEEeCCC-----cEEEEEecCCCEEEEEEecCCC-----C-ceEEEEECCCCCEEEEEeCCC
Confidence            6667766443     3678888888776554443221     1 122233333334556676553

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.67  E-value=0.073  Score=58.80  Aligned_cols=14  Identities=14%  Similarity=0.605  Sum_probs=6.6

Q ss_pred             CeEeeCCCCceEEee
Q 010551            5 SWHLELPYDLWVTLP   19 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~   19 (507)
                      +|+-|+. ..|..-.
T Consensus        13 vwv~~~~-~~~~~~~   26 (1080)
T 2dfs_A           13 VWIPDPE-EVWKSAE   26 (1080)
T ss_dssp             EEEEETT-TEEEEEE
T ss_pred             EEEECCC-CceEEEE
Confidence            3443432 4566544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.66  E-value=0.21  Score=47.88  Aligned_cols=185  Identities=12%  Similarity=0.051  Sum_probs=88.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      ++..++.|+.+.      .+.+||..++.-...-.   .  ......++.+   ++.+++.||.++      .+.++|+.
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~---~--h~~~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN---A--HSSEVNCVAACPGKDTIFLSCGEDG------RILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEEEC---C--CSSCEEEEEECTTCSSCEEEEETTS------CEEECCTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---C--CCCCEEEEEEccCCCceeeeeccCC------ceEEEECC
Confidence            456666666432      38889999886543321   1  1111222333   235677777553      48888887


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  252 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  252 (507)
                      +.+-.....   ..........+.+  .++.+++.|+.+     ..+.+||+.+..-...     ..........+.+  
T Consensus       213 ~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~~~~~-----~~~~~~~v~~l~~sp  279 (357)
T 4g56_B          213 KPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPDSAQT-----SAVHSQNITGLAYSY  279 (357)
T ss_dssp             SSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGGGCEE-----ECCCSSCEEEEEECS
T ss_pred             CCceeeeee---eccccccccchhhhhcccceEEEeecc-----cceeEEECCCCcEeEE-----EeccceeEEEEEEcC
Confidence            765322211   1111111222333  234477777654     3588899876542211     0111111122223  


Q ss_pred             C-CeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          253 D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       253 ~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      + .++++.|+.++     .+.++|+.+..-.......        ....+++..+.+..+++.||.++    .+.++++.
T Consensus       280 ~~~~~lasgs~D~-----~i~iwd~~~~~~~~~~~H~--------~~V~~vafsP~d~~~l~s~s~Dg----~v~iW~~~  342 (357)
T 4g56_B          280 HSSPFLASISEDC-----TVAVLDADFSEVFRDLSHR--------DFVTGVAWSPLDHSKFTTVGWDH----KVLHHHLP  342 (357)
T ss_dssp             SSSCCEEEEETTS-----CEEEECTTSCEEEEECCCS--------SCEEEEEECSSSTTEEEEEETTS----CEEEEECC
T ss_pred             CCCCEEEEEeCCC-----EEEEEECCCCcEeEECCCC--------CCEEEEEEeCCCCCEEEEEcCCC----eEEEEECC
Confidence            2 35666666433     3778898877543321110        11122222222334666777653    46666664

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.66  E-value=1.1  Score=41.68  Aligned_cols=103  Identities=14%  Similarity=0.168  Sum_probs=52.7

Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      .+++.||.+.      .+.+||+.+.+....-. +   ....-.+++...++.+++.|+.+     ..+.+||+.+..-.
T Consensus       186 ~~~~s~~~d~------~i~i~d~~~~~~~~~~~-~---h~~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~  250 (340)
T 4aow_A          186 PIIVSCGWDK------LVKVWNLANCKLKTNHI-G---HTGYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKHL  250 (340)
T ss_dssp             CEEEEEETTS------CEEEEETTTTEEEEEEC-C---CSSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEE
T ss_pred             cEEEEEcCCC------EEEEEECCCCceeeEec-C---CCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCcee
Confidence            4556666542      48889998876543321 1   11111223333455577777754     35888898876543


Q ss_pred             ecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          233 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       233 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .... .    ...-.+++...+..++.++.+     ..+.++|+.+..
T Consensus       251 ~~~~-~----~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~  288 (340)
T 4aow_A          251 YTLD-G----GDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKI  288 (340)
T ss_dssp             EEEE-C----SSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTE
T ss_pred             eeec-C----CceEEeeecCCCCceeeccCC-----CEEEEEECCCCe
Confidence            3211 1    111122233334445555533     247788887764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.66  E-value=1  Score=43.13  Aligned_cols=178  Identities=10%  Similarity=0.004  Sum_probs=89.1

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEEC--CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcc
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD--QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~   79 (507)
                      |..+.++|+...........  ......-.+++...  +.+++.|+.+     ..+.++|+.+.....+.....      
T Consensus        95 dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~------  161 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVFAKTDS------  161 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEEECCCC------
T ss_pred             CCeEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEEeccCC------
Confidence            44567778887777665421  01111112233333  3666666643     358899998765554443210      


Q ss_pred             ccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCE-E
Q 010551           80 EDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSR-L  154 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-i  154 (507)
                                .......+.+  ++.+++.|+.+      ..+.+||+....-..+..      ......++.+  ++. +
T Consensus       162 ----------~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~------h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          162 ----------WDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL------HKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             ----------SSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC------SSSCEEEEEECSSCTTE
T ss_pred             ----------CCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc------CCCcEEEEEECCCCCCE
Confidence                      0111112222  45566666543      358899985443333321      1112223333  233 7


Q ss_pred             EEEcCCCCCCCccCcEEEEECCC----CcEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          155 IIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       155 y~~GG~~~~~~~~n~~~~~d~~t----~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ++.|+.+.      .+.+||+.+    ........     ....-.+++... ++.+++.|+.+     +.+.+||+.+.
T Consensus       220 l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~  283 (383)
T 3ei3_B          220 MATSSVDA------TVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDW  283 (383)
T ss_dssp             EEEEETTS------EEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBT
T ss_pred             EEEEeCCC------EEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCC
Confidence            77777643      588899876    33322211     111122233333 45566666654     36889998765


Q ss_pred             c
Q 010551          230 E  230 (507)
Q Consensus       230 ~  230 (507)
                      .
T Consensus       284 ~  284 (383)
T 3ei3_B          284 S  284 (383)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.65  E-value=0.15  Score=48.31  Aligned_cols=106  Identities=19%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEE-----ECCEEEEEcCCCCCCCccCcEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTL-----VGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~-----~~~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      ++.+++.|+.+.      .+.+||+.++.  ...+... .....+.-.+++.     .++.+++.|+.+      ..+.+
T Consensus       128 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i  194 (357)
T 3i2n_A          128 GAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKL  194 (357)
T ss_dssp             CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEE
T ss_pred             CccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEE
Confidence            455666666432      38889988765  3333210 0000111112221     355667777654      35899


Q ss_pred             EECCCCcEEEeccCCCCCCCCCCceEEEEc---CCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       173 ~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~---~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                      ||+.+..-......     .....++....   ++..++.|+.+     ..+.+||+.+
T Consensus       195 ~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  243 (357)
T 3i2n_A          195 FDLRNMALRWETNI-----KNGVCSLEFDRKDISMNKLVATSLE-----GKFHVFDMRT  243 (357)
T ss_dssp             EETTTTEEEEEEEC-----SSCEEEEEESCSSSSCCEEEEEEST-----TEEEEEEEEE
T ss_pred             EECccCceeeecCC-----CCceEEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcC
Confidence            99988764333211     11122233332   44466666644     3577787654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.62  E-value=1.6  Score=41.42  Aligned_cols=111  Identities=10%  Similarity=0.044  Sum_probs=51.7

Q ss_pred             EEEEcCCCCCccCCc--eEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCc
Q 010551           40 LYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDS  116 (507)
Q Consensus        40 iyi~GG~~~~~~~~~--~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~  116 (507)
                      .+++|.+..+. ...  ++.+|+.++.+..+... ..               ....+.+..- +..||+.+.... ....
T Consensus        15 ~~~vg~y~~~~-~~~i~~~~~d~~~g~~~~~~~~-~~---------------~~p~~l~~spdg~~l~~~~~~~~-~~~~   76 (361)
T 3scy_A           15 TMLVGTYTSGN-SKGIYTFRFNEETGESLPLSDA-EV---------------ANPSYLIPSADGKFVYSVNEFSK-DQAA   76 (361)
T ss_dssp             EEEEEECCSSS-CCEEEEEEEETTTCCEEEEEEE-EC---------------SCCCSEEECTTSSEEEEEECCSS-TTCE
T ss_pred             EEEEEeccCCC-CCCEEEEEEeCCCCCEEEeecc-cC---------------CCCceEEECCCCCEEEEEEccCC-CCCc
Confidence            34456544321 233  45557778887766543 11               1111111122 345666654321 1113


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      -.+|.++..++..+.+..   .+..........+++ .||+....      .+.+.+|++.+
T Consensus        77 v~~~~~~~~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~  129 (361)
T 3scy_A           77 VSAFAFDKEKGTLHLLNT---QKTMGADPCYLTTNGKNIVTANYS------GGSITVFPIGQ  129 (361)
T ss_dssp             EEEEEEETTTTEEEEEEE---EECSSSCEEEEEECSSEEEEEETT------TTEEEEEEBCT
T ss_pred             EEEEEEeCCCCcEEEeeE---eccCCCCcEEEEECCCEEEEEECC------CCEEEEEEeCC
Confidence            345666777788776652   111111112222255 56654432      24588888864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.61  E-value=1.2  Score=42.00  Aligned_cols=197  Identities=11%  Similarity=0.057  Sum_probs=92.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.-...-...                  ......+.+  ++..++.|+.+    
T Consensus        43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~l~s~~~d----   95 (369)
T 3zwl_B           43 EGDLLFSCSKD-----SSASVWYSLNGERLGTLDGH------------------TGTIWSIDVDCFTKYCVTGSAD----   95 (369)
T ss_dssp             TSCEEEEEESS-----SCEEEEETTTCCEEEEECCC------------------SSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEEeCC-----CEEEEEeCCCchhhhhhhhc------------------CCcEEEEEEcCCCCEEEEEeCC----
Confidence            45666666533     35889998876543221110                  111222233  45566666543    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCc----EEEeccCC-
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT----WDAVEVTQ-  187 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~----W~~~~~~~-  187 (507)
                        ..+.+||+.++.-.....   .+.   ...++.+  ++..++.++.+.. .....+.+||+.+..    +....... 
T Consensus        96 --g~i~iwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B           96 --YSIKLWDVSNGQCVATWK---SPV---PVKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             --TEEEEEETTTCCEEEEEE---CSS---CEEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             --CeEEEEECCCCcEEEEee---cCC---CeEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeeccccccee
Confidence              358999998887554432   111   1122222  3455555544311 113467777765432    22211100 


Q ss_pred             -CC--CCCC-CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC-CcEEecccCCCCCCCCCccEEEEE-CCeEEEEec
Q 010551          188 -TP--PAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGG  261 (507)
Q Consensus       188 -~~--p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG  261 (507)
                       ..  .... ...+++...++.+++.|+.+     ..+.+||+.+ ..-..... .   ....-.+++.. ++.+++.|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSID-L---HEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEE-C---CSSCEEEEEECTTSSEEEEEE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEe-c---CCCceeEEEECCCCCEEEEec
Confidence             00  0000 11222223344466666643     3689999987 33322110 1   11111222222 456666665


Q ss_pred             cCCCCCcceEEEEECCCCcEEE
Q 010551          262 GDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       262 ~~~~~~~~~~~~~d~~~~~W~~  283 (507)
                      .++     .+.+||+.+.....
T Consensus       238 ~d~-----~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          238 RDT-----NSFLVDVSTLQVLK  254 (369)
T ss_dssp             TTS-----EEEEEETTTCCEEE
T ss_pred             CCc-----eEEEEECCCCceee
Confidence            432     58899988766443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.61  E-value=0.031  Score=61.74  Aligned_cols=17  Identities=12%  Similarity=0.429  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 010551          466 TIENEVQILRQQKSAFE  482 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~  482 (507)
                      .|+++.+.+++|++.++
T Consensus      1027 ~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1027 ELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444555555444444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.60  E-value=0.41  Score=38.37  Aligned_cols=24  Identities=8%  Similarity=0.260  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 010551          466 TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      .|..+...++++.+.+.+++++..
T Consensus       101 ~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A          101 ELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444555555555555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.59  E-value=0.77  Score=49.15  Aligned_cols=189  Identities=11%  Similarity=0.047  Sum_probs=93.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      ++.+++.|+.+     ..+.+||..++.....-....                .........-++..++.|+.+      
T Consensus        24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~d------   76 (814)
T 3mkq_A           24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDD------   76 (814)
T ss_dssp             SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEETT------
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCceEEEEecCC----------------CcEEEEEEeCCCCEEEEEeCC------
Confidence            45556666532     468899998876543222110                111111112245566666642      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC-cEEEeccCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPR  193 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~~~~~~~p~~r  193 (507)
                      ..+.+||..++........   .  .....++.+  ++..++.|+.+      ..+.+||+.++ .....-. +.   ..
T Consensus        77 g~i~vw~~~~~~~~~~~~~---~--~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~~---~~  141 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFEA---H--PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE-GH---EH  141 (814)
T ss_dssp             SEEEEEETTTCCEEEEEEC---C--SSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-CC---SS
T ss_pred             CeEEEEECCCCcEEEEEec---C--CCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-CC---CC
Confidence            3489999998876543311   1  111222333  34555566643      35888998765 3322211 11   11


Q ss_pred             CCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE---CCeEEEEeccCCCCCcc
Q 010551          194 YDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       194 ~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~  269 (507)
                      .-.+++... ++.+++.|+.+     ..+.+||+.+..-..... ..  .......++..   ++.++++|+.++     
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~l~~~~~dg-----  208 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLT-TG--QERGVNYVDYYPLPDKPYMITASDDL-----  208 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEE-CC--CTTCCCEEEECCSTTCCEEEEECTTS-----
T ss_pred             cEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEe-cC--CCCCEEEEEEEECCCCCEEEEEeCCC-----
Confidence            122233333 45577777654     368899986644221110 11  11111222222   456777776443     


Q ss_pred             eEEEEECCCCc
Q 010551          270 ETIVLNMTKLA  280 (507)
Q Consensus       270 ~~~~~d~~~~~  280 (507)
                      .+.+||+.+..
T Consensus       209 ~i~~~d~~~~~  219 (814)
T 3mkq_A          209 TIKIWDYQTKS  219 (814)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            57888887765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.57  E-value=1.6  Score=46.06  Aligned_cols=155  Identities=9%  Similarity=-0.011  Sum_probs=71.2

Q ss_pred             ceEEEEECCC-CcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551          117 MIVRFIDLET-NLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~  194 (507)
                      ..++++|+.+ +.-..+... . +....-..++.-++ .|++.......  ....++.+|+.+.+...+...........
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~~pDg~~l~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLG-K-EQDIYLARVNWRDPQHLSFQRQSRDQ--KKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCC-S-CSSEEEEEEEEEETTEEEEEEEETTS--SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eEEEEEECCCCCceEEecCC-C-CcceEEEEEEeCCCCEEEEEEecccC--CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence            3788999988 775554311 0 11111111111333 45544321111  24679999999988776643211000001


Q ss_pred             CceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEE
Q 010551          195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       195 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~  272 (507)
                      ....+...++.+++.++.++   ...+|.+|+... ...+.. +    .......+.+  +++.+++.+.........+|
T Consensus       339 ~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~-~----~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~  409 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH-G----NWSVDELLAVDEKAGLAYFRAGIESARESQIY  409 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC-S----SSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred             CCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee-c----ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence            12233334555666555432   357888887665 544421 1    1111122212  44444443333222244577


Q ss_pred             EEECCCCcEEEe
Q 010551          273 VLNMTKLAWSIL  284 (507)
Q Consensus       273 ~~d~~~~~W~~v  284 (507)
                      ..+.....-..+
T Consensus       410 ~~~~~g~~~~~l  421 (741)
T 2ecf_A          410 AVPLQGGQPQRL  421 (741)
T ss_dssp             EEETTCCCCEEC
T ss_pred             EEEcCCCCeeec
Confidence            777655443444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=95.56  E-value=0.94  Score=41.69  Aligned_cols=221  Identities=10%  Similarity=0.005  Sum_probs=109.9

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      .+++.||+... ...+...    . ...++++.- ++.||+....     ...+++||+.++....+.....        
T Consensus        50 ~~i~~~~~~~~-~~~~~~~----~-~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~--------  110 (296)
T 3e5z_A           50 NRTWAWSDDGQ-LSPEMHP----S-HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFE--------  110 (296)
T ss_dssp             TEEEEEETTSC-EEEEESS----C-SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEET--------
T ss_pred             CEEEEEECCCC-eEEEECC----C-CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccC--------
Confidence            35678888877 6555521    1 112333332 5677776531     2469999998888766543211        


Q ss_pred             CCCcCCCCCccceeEEEECCEEEEE----eccCC-------CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE
Q 010551           82 SGLLEVLPPMSDHCMVKWGTKLLIL----GGHYK-------KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV  150 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~lyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~  150 (507)
                          ..+..+....++.-+++||+.    |....       .......++.|++. ++...+..  ....+   ..++..
T Consensus       111 ----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s  180 (296)
T 3e5z_A          111 ----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFL  180 (296)
T ss_dssp             ----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEEC
T ss_pred             ----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEEC
Confidence                011112222223336778886    43210       01113479999988 66555432  11111   122222


Q ss_pred             -CCEEEEEcCCCCCCCccCcEEEEECC-CCcE-EEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC
Q 010551          151 -GSRLIIFGGEDRSRKLLNDVHFLDLE-TMTW-DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       151 -~~~iy~~GG~~~~~~~~n~~~~~d~~-t~~W-~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~  227 (507)
                       ++++++....      .+.+++||+. +++. ...... ... ...-.+++.-.++.+|+..+       +.|.+||+.
T Consensus       181 ~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~-~~~-~~~p~~i~~d~~G~l~v~~~-------~~v~~~~~~  245 (296)
T 3e5z_A          181 PSGNLLVSDTG------DNATHRYCLNARGETEYQGVHF-TVE-PGKTDGLRVDAGGLIWASAG-------DGVHVLTPD  245 (296)
T ss_dssp             TTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEE-CCS-SSCCCSEEEBTTSCEEEEET-------TEEEEECTT
T ss_pred             CCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEe-eCC-CCCCCeEEECCCCCEEEEcC-------CeEEEECCC
Confidence             4555544332      3469999986 5555 222111 111 11112344445666887651       469999987


Q ss_pred             CCcEEecccCCCCCCCCCccEEEEEC---CeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          228 TNEWSQPEIKGDLVTGRAGHAGITID---ENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       228 ~~~W~~~~~~~~~p~~r~~~~~~~~~---~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ......+..    |..  ..+++.-+   +.|||...       ..++.|++.+..
T Consensus       246 g~~~~~~~~----~~~--~~~~~f~~~d~~~L~v~t~-------~~l~~~~~~~~~  288 (296)
T 3e5z_A          246 GDELGRVLT----PQT--TSNLCFGGPEGRTLYMTVS-------TEFWSIETNVRG  288 (296)
T ss_dssp             SCEEEEEEC----SSC--CCEEEEESTTSCEEEEEET-------TEEEEEECSCCB
T ss_pred             CCEEEEEEC----CCC--ceeEEEECCCCCEEEEEcC-------CeEEEEEccccc
Confidence            554444321    111  11222212   25666532       258889887765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.54  E-value=1.8  Score=41.43  Aligned_cols=237  Identities=11%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.-........                +.........  ++.+++.|+.+.   
T Consensus       111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~---  166 (408)
T 4a11_B          111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNFEE----------------TVYSHHMSPVSTKHCLVAVGTRGP---  166 (408)
T ss_dssp             CTTCEEEEETT-----SEEEEEETTTTEEEEEEECSS----------------CEEEEEECSSCSSCCEEEEEESSS---
T ss_pred             CCcEEEEEeCC-----CeEEEeeCCCCccceeccCCC----------------ceeeeEeecCCCCCcEEEEEcCCC---
Confidence            44566666633     458899998876544332210                1111111111  334666665432   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--C-CEEEEEcCCCCCCCccCcEEEEECCCCc--EEEeccCC--
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQ--  187 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~-~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~--  187 (507)
                         .+.+||+.++.-....     ........++.+  + ..+++.|+.++      .+.+||+.+..  ...+....  
T Consensus       167 ---~v~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~  232 (408)
T 4a11_B          167 ---KVQLCDLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGK  232 (408)
T ss_dssp             ---SEEEEESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTC
T ss_pred             ---eEEEEeCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccc
Confidence               3888998876533221     111112223333  2 24777777653      48888886643  22221100  


Q ss_pred             ---CC----CCCCCC-ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEE--EECCeEE
Q 010551          188 ---TP----PAPRYD-HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI--TIDENWY  257 (507)
Q Consensus       188 ---~~----p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~--~~~~~l~  257 (507)
                         ..    ...... .+++...++..++.|+.+     +.+.+||+.++.-...................  ...+..+
T Consensus       233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             cceeeccccccccCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence               00    011111 122233344466666654     35889998876543321111111111111111  1123334


Q ss_pred             EEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          258 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       258 v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      ++++.+     ..+.+||+.+..-...  +.+..     ....+....+.+ .+++.||.++    .+.++++...
T Consensus       308 ~~~~~~-----~~i~v~d~~~~~~~~~--~~~~~-----~~v~~~~~s~~~-~~l~s~~~dg----~i~iw~~~~~  366 (408)
T 4a11_B          308 VFVPYG-----STIAVYTVYSGEQITM--LKGHY-----KTVDCCVFQSNF-QELYSGSRDC----NILAWVPSLY  366 (408)
T ss_dssp             EEEEET-----TEEEEEETTTCCEEEE--ECCCS-----SCEEEEEEETTT-TEEEEEETTS----CEEEEEECC-
T ss_pred             EEEecC-----CEEEEEECcCCcceee--eccCC-----CeEEEEEEcCCC-CEEEEECCCC----eEEEEeCCCC
Confidence            444322     2578899877653322  21110     122233333333 4455676553    4666676544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.51  E-value=1.6  Score=40.81  Aligned_cols=145  Identities=12%  Similarity=0.081  Sum_probs=76.5

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++..++.|+..      ..+.+||..++.-.....   .  ......++.+  +++.++.|+.++      .+.+||+.+
T Consensus       133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~---~--~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~  195 (321)
T 3ow8_A          133 DSQYLATGTHV------GKVNIFGVESGKKEYSLD---T--RGKFILSIAYSPDGKYLASGAIDG------IINIFDIAT  195 (321)
T ss_dssp             TSSEEEEECTT------SEEEEEETTTCSEEEEEE---C--SSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCceeEEec---C--CCceEEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence            45566666543      348888888776433221   0  1111222333  456677777653      589999988


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCe
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  255 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  255 (507)
                      .+-...-. +.   ...-.+++...++.+++.|+.++     .+.+||+.+......-     ......-..+.+  ++.
T Consensus       196 ~~~~~~~~-~h---~~~v~~l~~spd~~~l~s~s~dg-----~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          196 GKLLHTLE-GH---AMPIRSLTFSPDSQLLVTASDDG-----YIKIYDVQHANLAGTL-----SGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             TEEEEEEC-CC---SSCCCEEEECTTSCEEEEECTTS-----CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSS
T ss_pred             CcEEEEEc-cc---CCceeEEEEcCCCCEEEEEcCCC-----eEEEEECCCcceeEEE-----cCCCCceEEEEECCCCC
Confidence            76432211 11   11122334444555777777543     5888998876644321     111111122223  456


Q ss_pred             EEEEeccCCCCCcceEEEEECCCCc
Q 010551          256 WYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       256 l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .++.|+.++     .+.++|+.+..
T Consensus       262 ~l~s~s~D~-----~v~iwd~~~~~  281 (321)
T 3ow8_A          262 HFVSSSSDK-----SVKVWDVGTRT  281 (321)
T ss_dssp             EEEEEETTS-----CEEEEETTTTE
T ss_pred             EEEEEeCCC-----cEEEEeCCCCE
Confidence            777776543     37788887764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.48  E-value=1.3  Score=41.52  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=34.1

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceee
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSN   67 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~   67 (507)
                      |..++++|+.+.+....-.   .+.....+.+++.  ++.+|+.+..     ...+++||+.++.-..
T Consensus        20 ~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCcEEE
Confidence            4567899998887654432   1111122334433  3467777642     2469999998876543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.47  E-value=3.1  Score=43.79  Aligned_cols=110  Identities=17%  Similarity=0.107  Sum_probs=61.0

Q ss_pred             CCCeEeeCCCC--ceEEeecCCCCCC-----ccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccc
Q 010551            3 SGSWHLELPYD--LWVTLPVSGARPS-----PRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~~~~--~W~~~~~~~~~p~-----~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~   73 (507)
                      ..++++|..+.  .|+.-+.......     .....+.++.++.||+...      ...++.+|..+++  |+.......
T Consensus        80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l~AlDa~TG~~~W~~~~~~~~  153 (689)
T 1yiq_A           80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRLEAIDAKTGQRAWSVDTRADH  153 (689)
T ss_dssp             GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCSCT
T ss_pred             CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEEEEEECCCCCEeeeecCcCCC
Confidence            35778887654  6876542110000     0112234556888888653      2469999998875  876432010


Q ss_pred             cCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEe
Q 010551           74 LDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVM  132 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~  132 (507)
                                   ........+.++.++.+|+..+... ......++.||..|++  |+.-
T Consensus       154 -------------~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          154 -------------KRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             -------------TSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred             -------------CCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEec
Confidence                         0011222334556888877433211 1124569999999986  8765

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=95.42  E-value=0.17  Score=38.30  Aligned_cols=34  Identities=9%  Similarity=0.230  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhc
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNS  424 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  424 (507)
                      +.-|+.+....++.+.....+..+|++++.....
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~   59 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI   59 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555544443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.39  E-value=2  Score=41.20  Aligned_cols=190  Identities=10%  Similarity=0.006  Sum_probs=89.3

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCC-----------CCcCcEEEEECCEEEEEcCCCCCCCccC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV-----------TRGGHSVTLVGSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~-----------~r~~~~~~~~~~~iy~~GG~~~~~~~~n  168 (507)
                      ++..++.|+.+      ..+.+||+.++...........+.           +....+++...+..++.|+.+      +
T Consensus       160 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g  227 (425)
T 1r5m_A          160 DGTHIISMDVE------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------G  227 (425)
T ss_dssp             TSSEEEEEETT------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------G
T ss_pred             CCCEEEEEecC------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------C
Confidence            45555555543      238899998887554332111110           000222333333445666654      3


Q ss_pred             cEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccE
Q 010551          169 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  248 (507)
Q Consensus       169 ~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  248 (507)
                      .+.+||+.+..-...-.    .....-.+++...++.+++.|+.+     ..+.+||+.+.......  .  .....-.+
T Consensus       228 ~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~  294 (425)
T 1r5m_A          228 AIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCF--Y--GHSQSIVS  294 (425)
T ss_dssp             CEEEEETTCSSCSEEEC----CCSSCEEEEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEE--C--CCSSCEEE
T ss_pred             eEEEEEcCCCceeeeec----cCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEe--c--CCCccEEE
Confidence            59999998764322111    111112233334444466666643     35888888765422211  0  01111223


Q ss_pred             EEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEE
Q 010551          249 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM  328 (507)
Q Consensus       249 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  328 (507)
                      ++...+.+++.|+.++     .+.+||+.+..-.......        ......+.+..+..++++|+.+    ..+.++
T Consensus       295 ~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~d----g~i~i~  357 (425)
T 1r5m_A          295 ASWVGDDKVISCSMDG-----SVRLWSLKQNTLLALSIVD--------GVPIFAGRISQDGQKYAVAFMD----GQVNVY  357 (425)
T ss_dssp             EEEETTTEEEEEETTS-----EEEEEETTTTEEEEEEECT--------TCCEEEEEECTTSSEEEEEETT----SCEEEE
T ss_pred             EEECCCCEEEEEeCCC-----cEEEEECCCCcEeEecccC--------CccEEEEEEcCCCCEEEEEECC----CeEEEE
Confidence            3333333666665432     5888998776533321111        1112223333333455566644    357777


Q ss_pred             ECC
Q 010551          329 RLK  331 (507)
Q Consensus       329 ~~~  331 (507)
                      |+.
T Consensus       358 ~~~  360 (425)
T 1r5m_A          358 DLK  360 (425)
T ss_dssp             ECH
T ss_pred             ECC
Confidence            764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.36  E-value=0.43  Score=47.02  Aligned_cols=150  Identities=7%  Similarity=0.089  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.+++.|+.+     ..+.++|+.++....+.....               ......++... ++.+++.|+.++    
T Consensus       176 ~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~g~~dg----  231 (435)
T 4e54_B          176 NTNQFYASSME-----GTTRLQDFKGNILRVFASSDT---------------INIWFCSLDVSASSRMVVTGDNVG----  231 (435)
T ss_dssp             CTTEEEEECSS-----SCEEEEETTSCEEEEEECCSS---------------CSCCCCCEEEETTTTEEEEECSSS----
T ss_pred             CCCEEEEEeCC-----CEEEEeeccCCceeEEeccCC---------------CCccEEEEEECCCCCEEEEEeCCC----
Confidence            45566666644     358888988766554433221               11111222222 566777776432    


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                        .+.+||+.+..-.      .+..-.....++.+   ++.+++.|+.+.      .+.+||+.+..-...... .....
T Consensus       232 --~i~~wd~~~~~~~------~~~~h~~~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~~~~~-~~~h~  296 (435)
T 4e54_B          232 --NVILLNMDGKELW------NLRMHKKKVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKASFLY-SLPHR  296 (435)
T ss_dssp             --BEEEEESSSCBCC------CSBCCSSCEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSSCCSB-CCBCS
T ss_pred             --cEeeeccCcceeE------EEecccceEEeeeecCCCceEEEEecCcc------eeeEEecccccccceEEE-eeecc
Confidence              4888887654211      11111112233333   235677777653      467788765432111000 00000


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ..-.+++...++..++.|+.+     +.+.+||+.+..
T Consensus       297 ~~v~~~~~spdg~~l~s~~~D-----~~i~iwd~~~~~  329 (435)
T 4e54_B          297 HPVNAACFSPDGARLLTTDQK-----SEIRVYSASQWD  329 (435)
T ss_dssp             SCEEECCBCTTSSEEEEEESS-----SCEEEEESSSSS
T ss_pred             ccccceeECCCCCeeEEEcCC-----CEEEEEECCCCc
Confidence            000111112344466666654     358888887654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=95.36  E-value=1.8  Score=40.53  Aligned_cols=101  Identities=12%  Similarity=0.056  Sum_probs=53.4

Q ss_pred             cceEEEEECCCCcE-EEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCC--c-cCcEEEEECCCCcEEEeccCCCCCC
Q 010551          116 SMIVRFIDLETNLC-GVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRK--L-LNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       116 ~~~~~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~--~-~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                      ...++++|+.++.. ..+..    +   .....+...+.+++.+..+....  . ...++.+|  +.++..+...     
T Consensus       151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----  216 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-----  216 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----
T ss_pred             cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-----
Confidence            35799999999987 65542    2   22233333333555554332111  2 45788888  7777766431     


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCC--CCCCCcEEEEECCCCcEEec
Q 010551          192 PRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~~~  234 (507)
                        .......-+++.|++.+....  ......++.+|  ++.+..+
T Consensus       217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l  257 (347)
T 2gop_A          217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI  257 (347)
T ss_dssp             --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred             --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence              112222334454544443221  12345799998  6666654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.34  E-value=1.6  Score=42.50  Aligned_cols=147  Identities=11%  Similarity=0.087  Sum_probs=75.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|..++.....-...                  ......+.+  ++.+++.||.+.   
T Consensus       119 ~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h------------------~~~V~~v~~~~~~~~l~sgs~D~---  172 (410)
T 1vyh_C          119 VFSVMVSASED-----ATIKVWDYETGDFERTLKGH------------------TDSVQDISFDHSGKLLASCSADM---  172 (410)
T ss_dssp             SSSEEEEEESS-----SCEEEEETTTCCCCEEECCC------------------SSCEEEEEECTTSSEEEEEETTS---
T ss_pred             CCCEEEEEeCC-----CeEEEEECCCCcEEEEEecc------------------CCcEEEEEEcCCCCEEEEEeCCC---
Confidence            34566677643     35889998876543221110                  111122222  456777777543   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                         .+.+||+.+..-...     +........++.+  ++..++.|+.+      ..+.+||+.+..-...-. +.   .
T Consensus       173 ---~i~iwd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~h---~  234 (410)
T 1vyh_C          173 ---TIKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFT-GH---R  234 (410)
T ss_dssp             ---CCCEEETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEE-CC---S
T ss_pred             ---eEEEEeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEe-CC---C
Confidence               266778877643221     1111122233333  44566677754      358899998776432211 11   1


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      .....+....++.+++.|+.+     +.+.+||+.+....
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D-----~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSND-----QTVRVWVVATKECK  269 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEE
T ss_pred             ccEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcee
Confidence            111122223345577777654     35788888776544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.30  E-value=2.2  Score=41.13  Aligned_cols=106  Identities=9%  Similarity=0.047  Sum_probs=57.6

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++.+++.|+.+.      .+.+||+.++.-....     ........++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~  170 (420)
T 3vl1_A          108 QMRRFILGTTEG------DIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKD  170 (420)
T ss_dssp             SSCEEEEEETTS------CEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEECCC------CEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCC
Confidence            566777776532      3888998877544331     111122233333  45666677654      3589999876


Q ss_pred             CcEE-EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          178 MTWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       178 ~~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      .+-. .+..     ....-.+++...++.+++.|+.++     .+.+||+.+++-.
T Consensus       171 ~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~  216 (420)
T 3vl1_A          171 GSNPRTLIG-----HRATVTDIAIIDRGRNVLSASLDG-----TIRLWECGTGTTI  216 (420)
T ss_dssp             CCCCEEEEC-----CSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEE
T ss_pred             CcCceEEcC-----CCCcEEEEEEcCCCCEEEEEcCCC-----cEEEeECCCCcee
Confidence            5422 1210     011122333344554666666543     5888998877544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.29  E-value=1.3  Score=41.31  Aligned_cols=145  Identities=15%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      .+++.||.+      ..+.+||..++.......   ...  ....++.+  ++.+++.|+.++      .+.+||+.+..
T Consensus       186 ~~~~s~~~d------~~i~i~d~~~~~~~~~~~---~h~--~~v~~~~~s~~~~~l~s~s~Dg------~i~iwd~~~~~  248 (340)
T 4aow_A          186 PIIVSCGWD------KLVKVWNLANCKLKTNHI---GHT--GYLNTVTVSPDGSLCASGGKDG------QAMLWDLNEGK  248 (340)
T ss_dssp             CEEEEEETT------SCEEEEETTTTEEEEEEC---CCS--SCEEEEEECTTSSEEEEEETTC------EEEEEETTTTE
T ss_pred             cEEEEEcCC------CEEEEEECCCCceeeEec---CCC--CcEEEEEECCCCCEEEEEeCCC------eEEEEEeccCc
Confidence            355555543      238889998886544321   111  11223333  456777777653      58889988765


Q ss_pred             EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc----EEEEE--C
Q 010551          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH----AGITI--D  253 (507)
Q Consensus       180 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~----~~~~~--~  253 (507)
                      -...-..     .....+++...++ .++.++.+     +.+.+||+.+..-...............|    ..+.+  +
T Consensus       249 ~~~~~~~-----~~~v~~~~~~~~~-~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  317 (340)
T 4aow_A          249 HLYTLDG-----GDIINALCFSPNR-YWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD  317 (340)
T ss_dssp             EEEEEEC-----SSCEEEEEECSSS-SEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred             eeeeecC-----CceEEeeecCCCC-ceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence            4332211     1111222223344 44555543     35888898876543211101111111111    12222  4


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCCC
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      +..++.||.++     .+.++|++++
T Consensus       318 g~~l~sgs~Dg-----~v~iW~~~tG  338 (340)
T 4aow_A          318 GQTLFAGYTDN-----LVRVWQVTIG  338 (340)
T ss_dssp             SSEEEEEETTS-----CEEEEEEEC-
T ss_pred             CCEEEEEeCCC-----EEEEEeCCCc
Confidence            56777777543     3667776654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.26  E-value=1.4  Score=46.94  Aligned_cols=252  Identities=11%  Similarity=0.027  Sum_probs=121.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCC---
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKK---  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~---  112 (507)
                      +++.++++...++.....++++|+.++.........                 .... +++-. ++.||+ +.....   
T Consensus       173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~-----------------~~~~-~~~wspD~~l~~-~~~~~~~~~  233 (741)
T 1yr2_A          173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW-----------------VKFS-GLAWLGNDALLY-SRFAEPKEG  233 (741)
T ss_dssp             TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE-----------------EESC-CCEESTTSEEEE-EECCCC---
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC-----------------ceec-cEEEECCCEEEE-EEecCcccc
Confidence            555555554332332357999999999875542111                 0101 11111 323333 332221   


Q ss_pred             -----CCCcceEEEEECCCCcEE-EeecCCCCCCCCcCcEEEEE--CC-EEEEEcCCCCCCCccCcEEEEECCCC--c-E
Q 010551          113 -----SSDSMIVRFIDLETNLCG-VMETSGKVPVTRGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETM--T-W  180 (507)
Q Consensus       113 -----~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~--~~-~iy~~GG~~~~~~~~n~~~~~d~~t~--~-W  180 (507)
                           ......++.+++.++.-. .+... ....+.. ...+.+  ++ .|++......+  ..++++++|+.+.  . |
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFA-TPELPKR-GHGASVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEEC-CTTCTTC-EEEEEECTTSCEEEEEEECTTC--SCCEEEEEEEETTEECCC
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEec-cCCCCeE-EEEEEECCCCCEEEEEEEccCC--CcceEEEEECCCCCCccc
Confidence                 112446888888776521 11111 1111111 222223  44 45544432211  2578999999877  6 8


Q ss_pred             EEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC--CcEEecccCCCCCCCCCccEEEEECCeEEE
Q 010551          181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       181 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      ..+....     ......+..+++.||+....+  .....|+.+|+.+  ..|..+..  ....  ....+...++.+++
T Consensus       310 ~~l~~~~-----~~~~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~--~~~~--~l~~~~~~~~~lv~  378 (741)
T 1yr2_A          310 TALIPDL-----KAQWDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVP--ESKD--NLESVGIAGNRLFA  378 (741)
T ss_dssp             EEEECSS-----SSCEEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEEC--CCSS--EEEEEEEEBTEEEE
T ss_pred             EEecCCC-----CceEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEec--CCCC--eEEEEEEECCEEEE
Confidence            8875321     112222334567677765432  2235799999988  57887632  1111  11122334677776


Q ss_pred             EeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCc-eEEEEEccCCCCcCceEEEEECCCCC
Q 010551          259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~  334 (507)
                      ....+   ....++++++....-..+. .+..      +........+.. ..++.+.+  ......+|.+|+.+..
T Consensus       379 ~~~~d---g~~~l~~~~~~g~~~~~l~-~~~~------~~v~~~~~s~d~~~l~~~~ss--~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          379 SYIHD---AKSQVLAFDLDGKPAGAVS-LPGI------GSASGLSGRPGDRHAYLSFSS--FTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEET---TEEEEEEEETTSCEEEECB-CSSS------CEEEEEECCBTCSCEEEEEEE--TTEEEEEEEEETTTTE
T ss_pred             EEEEC---CEEEEEEEeCCCCceeecc-CCCC------eEEEEeecCCCCCEEEEEEcC--CCCCCEEEEEECCCCc
Confidence            65432   3456889997655444443 2111      111111111222 23333333  3346778888876543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.24  E-value=0.21  Score=50.41  Aligned_cols=34  Identities=9%  Similarity=0.267  Sum_probs=14.7

Q ss_pred             HHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccch
Q 010551          394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS  427 (507)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  427 (507)
                      ++.++.++++.+.+.++...++++.+++...+.+
T Consensus       365 l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e  398 (487)
T 3oja_A          365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE  398 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence            3334444444444444444444444444444333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.23  E-value=0.25  Score=36.67  Aligned_cols=47  Identities=17%  Similarity=0.272  Sum_probs=19.6

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      ++.++..++.++...+.++.....++..++.+....|.....+++++
T Consensus        10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El   56 (97)
T 2eqb_B           10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV   56 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444443333333333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=95.22  E-value=0.28  Score=37.40  Aligned_cols=17  Identities=29%  Similarity=0.303  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 010551          466 TIENEVQILRQQKSAFE  482 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~  482 (507)
                      +.+.++.-++++++.++
T Consensus        83 ~AE~evasLnRriqllE   99 (101)
T 3u59_A           83 DAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            44455555666555443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.22  E-value=1  Score=42.11  Aligned_cols=195  Identities=11%  Similarity=-0.012  Sum_probs=93.9

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      .++|+||+...+...+...    ....-++++.- ++.+|+.+... ......+++||+.++....+.....        
T Consensus        66 ~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~--------  132 (333)
T 2dg1_A           66 GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDLS--------  132 (333)
T ss_dssp             CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSSS--------
T ss_pred             CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEEEEEEccCc--------
Confidence            4578888888887776421    11222333333 56787765322 1122469999998876653321110        


Q ss_pred             CCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEEc
Q 010551           82 SGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIFG  158 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~G  158 (507)
                            +..+. ..++.. ++.+|+.............++.||+.+++...+...  ..   ....++.. ++ .||+..
T Consensus       133 ------~~~~~-~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~i~~~~dg~~l~v~~  200 (333)
T 2dg1_A          133 ------TAYCI-DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIALSTDEKVLWVTE  200 (333)
T ss_dssp             ------SCCCE-EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEECTTSSEEEEEE
T ss_pred             ------cCCcc-cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CC---cccceEECCCCCEEEEEe
Confidence                  11111 122222 567777543221112245699999988777665321  10   01122222 33 577654


Q ss_pred             CCCCCCCccCcEEEEECCC--CcEEEeccC--CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          159 GEDRSRKLLNDVHFLDLET--MTWDAVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       159 G~~~~~~~~n~~~~~d~~t--~~W~~~~~~--~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ..      .+.+++||+.+  .....+...  ...+....-..++.-.++.+|+....     .+.+.+||+.......
T Consensus       201 ~~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~~  268 (333)
T 2dg1_A          201 TT------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQ  268 (333)
T ss_dssp             GG------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEE
T ss_pred             CC------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEEE
Confidence            32      34689999854  233322100  00110011122333345557775422     1368899986444333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.16  E-value=2.3  Score=41.77  Aligned_cols=111  Identities=12%  Similarity=0.048  Sum_probs=55.8

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEE-eecCCCCCCCCcCcEE--EEEC---CEEEEEcCCCCCCCccCcEEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVTRGGHSV--TLVG---SRLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r~~~~~--~~~~---~~iy~~GG~~~~~~~~n~~~~~  173 (507)
                      ++..++.|+.      ...++.++..+..... ...  .+........+  ..-+   +.+++.|+.+      ..+.+|
T Consensus       160 ~~~~l~~~~~------~g~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vw  225 (450)
T 2vdu_B          160 DDTTVIIADK------FGDVYSIDINSIPEEKFTQE--PILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKIS  225 (450)
T ss_dssp             TSSEEEEEET------TSEEEEEETTSCCCSSCCCC--CSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEE
T ss_pred             CCCEEEEEeC------CCcEEEEecCCcccccccce--eeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEE
Confidence            4556666653      2348888887664321 000  01001111122  2235   6777778765      358899


Q ss_pred             ECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          174 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       174 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      |+.+.........+.    ......+.+.++.+++.|+.+     +.+.+||+.+++...
T Consensus       226 d~~~~~~~~~~~~~h----~~~v~~~~~sd~~~l~s~~~d-----~~v~vwd~~~~~~~~  276 (450)
T 2vdu_B          226 HYPQCFIVDKWLFGH----KHFVSSICCGKDYLLLSAGGD-----DKIFAWDWKTGKNLS  276 (450)
T ss_dssp             EESCTTCEEEECCCC----SSCEEEEEECSTTEEEEEESS-----SEEEEEETTTCCEEE
T ss_pred             ECCCCceeeeeecCC----CCceEEEEECCCCEEEEEeCC-----CeEEEEECCCCcEee
Confidence            988766443311111    111122222244466666643     368899998876443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.15  E-value=1.9  Score=39.45  Aligned_cols=148  Identities=8%  Similarity=0.051  Sum_probs=71.6

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ++..++.|+.++      .+..||.... -..+.    .+......+++...++. ++.|+.+     ..+.+||+.+..
T Consensus       154 ~~~~l~~~~~d~------~i~i~d~~~~-~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~  216 (313)
T 3odt_A          154 SENKFLTASADK------TIKLWQNDKV-IKTFS----GIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGD  216 (313)
T ss_dssp             TTTEEEEEETTS------CEEEEETTEE-EEEEC----SSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCC
T ss_pred             CCCEEEEEECCC------CEEEEecCce-EEEEe----ccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchh
Confidence            556666666543      4888883321 11221    11122223344445665 5566543     368999998765


Q ss_pred             EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceE
Q 010551          231 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH  310 (507)
Q Consensus       231 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (507)
                      -...-. +   ....-.+++...+..++.|+.++     .+.+||+.+......-..+.       . ....+....+..
T Consensus       217 ~~~~~~-~---~~~~i~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~-------~-~i~~~~~~~~~~  279 (313)
T 3odt_A          217 VLRTYE-G---HESFVYCIKLLPNGDIVSCGEDR-----TVRIWSKENGSLKQVITLPA-------I-SIWSVDCMSNGD  279 (313)
T ss_dssp             EEEEEE-C---CSSCEEEEEECTTSCEEEEETTS-----EEEEECTTTCCEEEEEECSS-------S-CEEEEEECTTSC
T ss_pred             hhhhhh-c---CCceEEEEEEecCCCEEEEecCC-----EEEEEECCCCceeEEEeccC-------c-eEEEEEEccCCC
Confidence            433211 1   11111223333232355555332     58899988876443322211       1 122233333333


Q ss_pred             EEEEccCCCCcCceEEEEECCCCCCCC
Q 010551          311 LVAFGGYNGKYNNEVFVMRLKPRDIPR  337 (507)
Q Consensus       311 l~v~GG~~~~~~~~~~~~~~~~~~w~~  337 (507)
                      ++ .|+.+    ..+.++++....+..
T Consensus       280 ~~-~~~~d----g~i~iw~~~~~~~~~  301 (313)
T 3odt_A          280 II-VGSSD----NLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EE-EEETT----SCEEEEESCGGGCCC
T ss_pred             EE-EEeCC----CcEEEEeCCCCceee
Confidence            44 46654    468888887665543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.11  E-value=2.5  Score=40.62  Aligned_cols=198  Identities=14%  Similarity=0.114  Sum_probs=91.9

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcE-----EEeecCCCCCCCCcCcEEEEE--C-CEEEEEcCCCCCCCccCcEEE
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLC-----GVMETSGKVPVTRGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W-----~~~~~~g~~p~~r~~~~~~~~--~-~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      +.+++.|+.+.      .+.+||+.++.=     ..... +..........++.+  + +.+++.|+.++      .+.+
T Consensus       126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~i  192 (416)
T 2pm9_A          126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASI  192 (416)
T ss_dssp             TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEE
T ss_pred             CCEEEEEcCCC------eEEEEECCCCcccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEE
Confidence            56777776432      388888887640     01110 011111111222333  2 46777777643      5999


Q ss_pred             EECCCCcEEEeccCCCCCCC-CCCceEEEE-cC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCC-CCCCccE
Q 010551          173 LDLETMTWDAVEVTQTPPAP-RYDHSAALH-AN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHA  248 (507)
Q Consensus       173 ~d~~t~~W~~~~~~~~~p~~-r~~~~~~~~-~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~~~  248 (507)
                      ||+.+.+-...-........ ......+.+ .+ ..+++.|+.++.  ...+.+||+.+..-..    .... .......
T Consensus       193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~~----~~~~~~~~~~v~  266 (416)
T 2pm9_A          193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTPL----QTLNQGHQKGIL  266 (416)
T ss_dssp             EETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSCS----BCCCSCCSSCEE
T ss_pred             EECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCCc----EEeecCccCcee
Confidence            99988765433221000000 122222233 33 246666665431  1257888887643111    0111 1111112


Q ss_pred             EEEE---CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceE
Q 010551          249 GITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEV  325 (507)
Q Consensus       249 ~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  325 (507)
                      .+.+   ++.+++.|+.++     .+.+||+.+..-..  .+....     ....+....+.+..+++.|+.+    ..+
T Consensus       267 ~~~~s~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~--~~~~~~-----~~v~~~~~s~~~~~~l~s~~~d----~~i  330 (416)
T 2pm9_A          267 SLDWCHQDEHLLLSSGRDN-----TVLLWNPESAEQLS--QFPARG-----NWCFKTKFAPEAPDLFACASFD----NKI  330 (416)
T ss_dssp             EEEECSSCSSCEEEEESSS-----EEEEECSSSCCEEE--EEECSS-----SCCCCEEECTTCTTEEEECCSS----SEE
T ss_pred             EEEeCCCCCCeEEEEeCCC-----CEEEeeCCCCccce--eecCCC-----CceEEEEECCCCCCEEEEEecC----CcE
Confidence            2222   456777776443     47888887764322  111110     1112222333332566777754    457


Q ss_pred             EEEECCCC
Q 010551          326 FVMRLKPR  333 (507)
Q Consensus       326 ~~~~~~~~  333 (507)
                      .++++...
T Consensus       331 ~iw~~~~~  338 (416)
T 2pm9_A          331 EVQTLQNL  338 (416)
T ss_dssp             EEEESCCC
T ss_pred             EEEEccCC
Confidence            77787654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.07  E-value=0.13  Score=41.75  Aligned_cols=65  Identities=14%  Similarity=0.243  Sum_probs=30.6

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~  486 (507)
                      .-+++++.+.++.++++..+++.....++...+.+.+.+++++.          ++++++..+++++..++.+++
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~----------~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK----------ELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444433333          344445555555555555554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.03  E-value=2.6  Score=44.38  Aligned_cols=149  Identities=13%  Similarity=0.049  Sum_probs=81.0

Q ss_pred             cceEEEEECCCC--cEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCC---cEEEeccCCCCC
Q 010551          116 SMIVRFIDLETN--LCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM---TWDAVEVTQTPP  190 (507)
Q Consensus       116 ~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~---~W~~~~~~~~~p  190 (507)
                      .+.+|++|+.+.  .|..+..    +...........++.||+....+..   ...++.+|+.+.   .|+.+.+...  
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~--  328 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPERQ--  328 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCCS--
T ss_pred             CcEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecCCC--
Confidence            357999998776  6877752    1111112234457899988765432   346999998764   4887754221  


Q ss_pred             CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--C-CeEEEEeccCCCCC
Q 010551          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--D-ENWYIVGGGDNNNG  267 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~  267 (507)
                        .. . .....+++|++..-.++   ...++++|+.......+.    .|..... .....  + +.+++...  +...
T Consensus       329 --~~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~----~p~~~~~-~~~~~~~d~~~l~~~~s--s~~t  394 (693)
T 3iuj_A          329 --QV-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREVA----LPGLGSV-SGFNGKHDDPALYFGFE--NYAQ  394 (693)
T ss_dssp             --SC-E-EEEEETTEEEEEEEETT---EEEEEEECTTSCEEEEEC----CSSSSEE-EECCCCTTCSCEEEEEE--CSSS
T ss_pred             --CE-E-EEEEECCEEEEEEEECC---eeEEEEEECCCCeeEEee----cCCCceE-EeeecCCCCCEEEEEec--CCCC
Confidence              11 1 33344565655433222   246889998866555442    2221111 11111  2 33443322  2223


Q ss_pred             cceEEEEECCCCcEEEeccC
Q 010551          268 CQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       268 ~~~~~~~d~~~~~W~~v~~~  287 (507)
                      -..++.||+.+...+.+...
T Consensus       395 P~~l~~~d~~~g~~~~l~~~  414 (693)
T 3iuj_A          395 PPTLYRFEPKSGAISLYRAS  414 (693)
T ss_dssp             CCEEEEECTTTCCEEEEECC
T ss_pred             CCEEEEEECCCCeEEEEEeC
Confidence            35789999988887776543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=95.00  E-value=2.7  Score=40.46  Aligned_cols=201  Identities=8%  Similarity=-0.001  Sum_probs=94.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeec--CCCCCCCCcCcEEEEE--CC-EEEEEcCCCCCCCccCcEEEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET--SGKVPVTRGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~g~~p~~r~~~~~~~~--~~-~iy~~GG~~~~~~~~n~~~~~d  174 (507)
                      ++.+++.|+.+      ..+.+||..++.......  ...+........++.+  ++ .+++.|+.++      .+.++|
T Consensus        93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd  160 (402)
T 2aq5_A           93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWD  160 (402)
T ss_dssp             CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEE
T ss_pred             CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEE
Confidence            55677777643      248888888774311000  0000001111222333  22 4677777553      589999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-C
Q 010551          175 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D  253 (507)
Q Consensus       175 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~  253 (507)
                      +.+.+....-..  ......-.+++...++.+++.|+.+     ..+.+||+.++.-......+  ........++.. +
T Consensus       161 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          161 VGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRP--HEGTRPVHAVFVSE  231 (402)
T ss_dssp             TTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECS--SCSSSCCEEEECST
T ss_pred             CCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccC--CCCCcceEEEEcCC
Confidence            988765433210  0111112233333355466666644     36999999887654321001  111111222222 5


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCCCcE-EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      +.+++.|....  .-..+.+||+.+..- ..+..+...      ....+....+.+..|++.|+.+    ..+.+|++..
T Consensus       232 ~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~g~~d----g~i~i~d~~~  299 (402)
T 2aq5_A          232 GKILTTGFSRM--SERQVALWDTKHLEEPLSLQELDTS------SGVLLPFFDPDTNIVYLCGKGD----SSIRYFEITS  299 (402)
T ss_dssp             TEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECCCC------SSCEEEEEETTTTEEEEEETTC----SCEEEEEECS
T ss_pred             CcEEEEeccCC--CCceEEEEcCccccCCceEEeccCC------CceeEEEEcCCCCEEEEEEcCC----CeEEEEEecC
Confidence            66666662111  123578899876431 011111111      1223334445556777777544    3466666654


Q ss_pred             C
Q 010551          333 R  333 (507)
Q Consensus       333 ~  333 (507)
                      .
T Consensus       300 ~  300 (402)
T 2aq5_A          300 E  300 (402)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.98  E-value=2.6  Score=40.17  Aligned_cols=186  Identities=9%  Similarity=0.058  Sum_probs=95.9

Q ss_pred             EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCc-EEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGH-SVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      .+++.|+.+.      .+.+||+.++.......   ........ +++..  ++.+++.|+.+      ..+.++|+.+.
T Consensus        87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG------DIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS------CEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSC
T ss_pred             CEEEEEcCCC------eEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCC
Confidence            5777776532      38899999888766542   11111222 23333  33677777654      35889999887


Q ss_pred             cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCe-
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN-  255 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~-  255 (507)
                      ....+.....  ......+++...++.+++.|+.+     ..+.+||+.......+..      .......+.+  ++. 
T Consensus       152 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~------h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          152 VIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKL------HKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEEECCCC--SSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEEC------SSSCEEEEEECSSCTT
T ss_pred             ceEEEeccCC--CCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEecc------CCCcEEEEEECCCCCC
Confidence            6666643211  11122233344455567777654     368899985443333211      1111122223  233 


Q ss_pred             EEEEeccCCCCCcceEEEEECCC----CcEEEeccCCCCCCCCCCCCceEEEEEcC-ceEEEEEccCCCCcCceEEEEEC
Q 010551          256 WYIVGGGDNNNGCQETIVLNMTK----LAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       256 l~v~GG~~~~~~~~~~~~~d~~~----~~W~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~  330 (507)
                      +++.|+.++     .+.+||+.+    ..........        . ....+.... +..+++.|+.+    ..+.++|+
T Consensus       219 ~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~--------~-~v~~~~~s~~~~~~l~~~~~d----~~i~iwd~  280 (383)
T 3ei3_B          219 LMATSSVDA-----TVKLWDLRNIKDKNSYIAEMPHE--------K-PVNAAYFNPTDSTKLLTTDQR----NEIRVYSS  280 (383)
T ss_dssp             EEEEEETTS-----EEEEEEGGGCCSTTCEEEEEECS--------S-CEEEEEECTTTSCEEEEEESS----SEEEEEET
T ss_pred             EEEEEeCCC-----EEEEEeCCCCCcccceEEEecCC--------C-ceEEEEEcCCCCCEEEEEcCC----CcEEEEEC
Confidence            777776443     477888876    3332221111        1 122233333 33455566644    46777887


Q ss_pred             CCC
Q 010551          331 KPR  333 (507)
Q Consensus       331 ~~~  333 (507)
                      ...
T Consensus       281 ~~~  283 (383)
T 3ei3_B          281 YDW  283 (383)
T ss_dssp             TBT
T ss_pred             CCC
Confidence            544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.94  E-value=0.36  Score=54.69  Aligned_cols=178  Identities=11%  Similarity=0.046  Sum_probs=84.5

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ..+.+||+.+..-.....   .........+..-++..++.|+.+     ..+.++|..++.........          
T Consensus       983 g~i~i~d~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~---------- 1044 (1249)
T 3sfz_A          983 GAIKIIELPNNRVFSSGV---GHKKAVRHIQFTADGKTLISSSED-----SVIQVWNWQTGDYVFLQAHQ---------- 1044 (1249)
T ss_dssp             SCCEEEETTTTSCEEECC---CCSSCCCCEEECSSSSCEEEECSS-----SBEEEEETTTTEEECCBCCS----------
T ss_pred             CCEEEEEcCCCceeeecc---cCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCceEEEecCC----------
Confidence            445667776665443321   111112222222255566666643     35889999887765433211          


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~  162 (507)
                              ..-.+++...+..++.|+.+      ..+.+||..++.-.....   .........+..-++..++.|+.++
T Consensus      1045 --------~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A         1045 --------ETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIERDFT---CHQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp             --------SCEEEEEECSSSEEEEEESS------SEEEEEETTTTCCCEEEE---CCSSCCCCEEECSSSSSCEEECCSS
T ss_pred             --------CcEEEEEEcCCCcEEEEECC------CcEEEEECCCCceeEEEc---ccCCcEEEEEECCCCCEEEEEcCCC
Confidence                    11112222233334445432      348899998876433221   1111111112222456667777653


Q ss_pred             CCCccCcEEEEECCCCcEEEeccCCCCCCCCCC-ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       163 ~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                            .+.+||+.+..-  +.   ........ .+++...++.+++.|+.++     .+.+||+.++..
T Consensus      1108 ------~v~iwd~~~~~~--~~---~l~~h~~~v~~~~~s~dg~~lat~~~dg-----~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1108 ------TAKIWSFDLLSP--LH---ELKGHNGCVRCSAFSLDGILLATGDDNG-----EIRIWNVSDGQL 1161 (1249)
T ss_dssp             ------CCCEECSSSSSC--SB---CCCCCSSCEEEEEECSSSSEEEEEETTS-----CCCEEESSSSCC
T ss_pred             ------cEEEEECCCcce--ee---eeccCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCce
Confidence                  467778765541  11   11111111 1223334555777777543     477888877653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=94.94  E-value=2.5  Score=39.66  Aligned_cols=235  Identities=13%  Similarity=0.028  Sum_probs=117.9

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCC--cE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETN--LC  129 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W  129 (507)
                      +.++++|+.+++........               .. ..-++++.. +++||+....      ...+.+||+...  .-
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~---------------~~-~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~  126 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKN---------------LF-YLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPL  126 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTT---------------TC-SSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCS
T ss_pred             CcEEEEECCCCeEEeccCCC---------------cc-CCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEE
Confidence            46999999887764322111               00 111223322 5678887542      345999998765  22


Q ss_pred             EEeecC---CCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCC----CCCCC-CceE
Q 010551          130 GVMETS---GKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP----PAPRY-DHSA  198 (507)
Q Consensus       130 ~~~~~~---g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~----p~~r~-~~~~  198 (507)
                      ..+...   |..+........+.+   ++.||+..++.     .+.+.+||+....-..+...+..    +.... -+.+
T Consensus       127 ~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gi  201 (329)
T 3fvz_A          127 LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL  201 (329)
T ss_dssp             EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEE
T ss_pred             EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEE
Confidence            233211   111111222233333   46899987632     24689999654443444322211    11111 2234


Q ss_pred             EEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCC--CCCcceEEEEE
Q 010551          199 ALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN--NNGCQETIVLN  275 (507)
Q Consensus       199 ~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~d  275 (507)
                      ++-.+ +.|||....+     +.|.+||+.+++....-.  .........+++...+.+++..|...  +.....+.++|
T Consensus       202 a~d~~~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~--~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~  274 (329)
T 3fvz_A          202 ALVPHLDQLCVADREN-----GRIQCFKTDTKEFVREIK--HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN  274 (329)
T ss_dssp             EEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEC--CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CEEEEEECCCCcEEEEEe--ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE
Confidence            44444 7788876432     469999998777654311  11111122233334466666666322  22234688999


Q ss_pred             CCCCcEEEecc-CCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          276 MTKLAWSILTS-VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       276 ~~~~~W~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      +.+......-. .+.     .... ...+.++.+..|||....    .+.+++|++.
T Consensus       275 ~~~g~~~~~~~~~~~-----~~~~-p~~ia~~~dG~lyvad~~----~~~I~~~~~~  321 (329)
T 3fvz_A          275 FSSGEIIDVFKPVRK-----HFDM-PHDIVASEDGTVYIGDAH----TNTVWKFTLT  321 (329)
T ss_dssp             TTTCCEEEEECCSSS-----CCSS-EEEEEECTTSEEEEEESS----SCCEEEEEEE
T ss_pred             cCCCeEEEEEcCCCC-----ccCC-eeEEEECCCCCEEEEECC----CCEEEEEeCC
Confidence            88876554311 111     1111 223344444477876543    3577888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=94.92  E-value=1.6  Score=45.99  Aligned_cols=250  Identities=13%  Similarity=0.023  Sum_probs=124.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECC-EEEEEeccCCC---
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKK---  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~---  112 (507)
                      +++.++++-...+.....++++|+.++.........                 .+....+.. ++ .||+.......   
T Consensus       139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-----------------~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD-----------------VKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE-----------------EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC-----------------ceeccEEEe-CCCEEEEEEecCccccc
Confidence            555555543222333457999999999875543211                 112223334 54 45544332210   


Q ss_pred             ---CCCcceEEEEECCCCcEE--EeecCCCCCC--CCcCcEEEE-ECC-EEEEEcCCCCCCCccCcEEEEECCCC--cEE
Q 010551          113 ---SSDSMIVRFIDLETNLCG--VMETSGKVPV--TRGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--TWD  181 (507)
Q Consensus       113 ---~~~~~~~~~yd~~t~~W~--~~~~~g~~p~--~r~~~~~~~-~~~-~iy~~GG~~~~~~~~n~~~~~d~~t~--~W~  181 (507)
                         ......++.+++.+..=.  .+.   ..+.  +....++.. -++ .|++....+.   ..++++.+|+.+.  .|.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCE
T ss_pred             ccccCCCcEEEEEECCCCcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceE
Confidence               022456888888776431  221   1111  111112222 234 4544433222   2368999998766  688


Q ss_pred             EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC---cEEecccCCCCCCCCCccEEEEECCeEEE
Q 010551          182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       182 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      .+...     ...........++.+|+....+.  ....|+.+|+.+.   .|+.+..  ....  .. +....++.|++
T Consensus       275 ~l~~~-----~~~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~--~~~~--~~-~~s~~g~~lv~  342 (693)
T 3iuj_A          275 TVQGD-----LDADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIP--ERQQ--VL-TVHSGSGYLFA  342 (693)
T ss_dssp             EEECS-----SSSCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEEC--CCSS--CE-EEEEETTEEEE
T ss_pred             EEeCC-----CCceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEec--CCCC--EE-EEEEECCEEEE
Confidence            77531     11222224455777888766432  2457999998774   3776532  1111  11 44445666665


Q ss_pred             EeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEE--cCceEEEEEccCCCCcCceEEEEECCCCCC
Q 010551          259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w  335 (507)
                      ..-.   .....++++|+.......+. ++..      +. ...+..  +++..++.+.++  .....+|.+|+.....
T Consensus       343 ~~~~---~g~~~l~~~d~~g~~~~~l~-~p~~------~~-~~~~~~~~d~~~l~~~~ss~--~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          343 EYMV---DATARVEQFDYEGKRVREVA-LPGL------GS-VSGFNGKHDDPALYFGFENY--AQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEE---TTEEEEEEECTTSCEEEEEC-CSSS------SE-EEECCCCTTCSCEEEEEECS--SSCCEEEEECTTTCCE
T ss_pred             EEEE---CCeeEEEEEECCCCeeEEee-cCCC------ce-EEeeecCCCCCEEEEEecCC--CCCCEEEEEECCCCeE
Confidence            5322   23457889998876655553 2211      11 111111  222333444433  3456788888865543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.91  E-value=0.33  Score=46.52  Aligned_cols=106  Identities=12%  Similarity=0.133  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                      ++..++.|+.+.      .+.++|+.+.+-...-.     ........+.+  .++.+++.||.++     .+.+||+.+
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg-----~v~~wd~~~  213 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN-----AHSSEVNCVAACPGKDTIFLSCGEDG-----RILLWDTRK  213 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTCSSCEEEEETTS-----CEEECCTTS
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEEc-----CCCCCEEEEEEccCCCceeeeeccCC-----ceEEEECCC
Confidence            456667777653      48899998876443321     01111122222  2333666666542     477888876


Q ss_pred             CcEEecccCCCCCCCCCccEEEEE---CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          229 NEWSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       229 ~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .+-....   ...........+.+   ++.+++.|+.++     .+.+||+.+..
T Consensus       214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~~  260 (357)
T 4g56_B          214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNPD  260 (357)
T ss_dssp             SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCGG
T ss_pred             Cceeeee---eeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCCc
Confidence            5432210   11111111222333   346777776443     37788887654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.89  E-value=0.58  Score=43.35  Aligned_cols=187  Identities=7%  Similarity=-0.087  Sum_probs=89.8

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .++.||+....-..+..    +. + -.+++.. ++.||+..       .+.+++||+.++.++.+.....         
T Consensus        36 ~i~~~d~~~~~~~~~~~----~~-~-~~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~~~~~~---------   93 (297)
T 3g4e_A           36 KVCRWDSFTKQVQRVTM----DA-P-VSSVALRQSGGYVATI-------GTKFCALNWKEQSAVVLATVDN---------   93 (297)
T ss_dssp             EEEEEETTTCCEEEEEC----SS-C-EEEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEEEEECCT---------
T ss_pred             EEEEEECCCCcEEEEeC----CC-c-eEEEEECCCCCEEEEE-------CCeEEEEECCCCcEEEEEecCC---------
Confidence            45677777766555442    11 1 1222222 55566543       2469999999998877654321         


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCC------CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEE
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKK------SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRL  154 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~i  154 (507)
                         ..+..+....++.-++++|+.. ....      ......++.+++. +....+......|     ..++..  +..+
T Consensus        94 ---~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~p-----ngi~~spdg~~l  163 (297)
T 3g4e_A           94 ---DKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDIS-----NGLDWSLDHKIF  163 (297)
T ss_dssp             ---TCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBE-----EEEEECTTSCEE
T ss_pred             ---CCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECC-CCEEEEeeccccc-----cceEEcCCCCEE
Confidence               1111222222222256776632 2111      1124568889875 3443332110111     122222  3367


Q ss_pred             EEEcCCCCCCCccCcEEEEEC--CCCcEEEeccCCCCCC-CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          155 IIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       155 y~~GG~~~~~~~~n~~~~~d~--~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      |+....      .+.+++||.  .++...........+. ...-.+++.-.++.||+....+     +.|++||+.+++.
T Consensus       164 yv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~  232 (297)
T 3g4e_A          164 YYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKR  232 (297)
T ss_dssp             EEEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCE
T ss_pred             EEecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceE
Confidence            776543      346888876  4554432111000110 1111234444456688754221     3599999987765


Q ss_pred             Ee
Q 010551          232 SQ  233 (507)
Q Consensus       232 ~~  233 (507)
                      ..
T Consensus       233 ~~  234 (297)
T 3g4e_A          233 LQ  234 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.87  E-value=0.38  Score=36.68  Aligned_cols=11  Identities=27%  Similarity=0.329  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHH
Q 010551          391 IDAIKEDKRVL  401 (507)
Q Consensus       391 ~~~l~~~~~~~  401 (507)
                      +..|+.++...
T Consensus        11 m~~lk~e~e~a   21 (101)
T 3u59_A           11 MQMLKLDKENA   21 (101)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.87  E-value=4.5  Score=42.35  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=59.9

Q ss_pred             CCeEeeCCCC--ceEEeecCCCCCC-----ccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeecccccc
Q 010551            4 GSWHLELPYD--LWVTLPVSGARPS-----PRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETEL   74 (507)
Q Consensus         4 ~~~~~d~~~~--~W~~~~~~~~~p~-----~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~   74 (507)
                      .++++|..+.  .|+.-+.......     .....+.++.++.||+...      ...++.+|..+++  |+....... 
T Consensus        77 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~~-  149 (668)
T 1kv9_A           77 RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRLIALDAKTGKAIWSQQTTDPA-  149 (668)
T ss_dssp             EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEEEEEETTTCCEEEEEECSCTT-
T ss_pred             eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEEEEEECCCCCEeeeeccCCCC-
Confidence            3677787654  6876542110000     0112334556888887653      2469999998875  876432110 


Q ss_pred             CCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEee
Q 010551           75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVME  133 (507)
Q Consensus        75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~  133 (507)
                                   .......+.++.++.||+..+... ......++.||..|++  |+.-.
T Consensus       150 -------------~~~~~~~~P~v~~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          150 -------------KPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             -------------SSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred             -------------CcceecCCCEEECCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEecc
Confidence                         011222334556888877433211 1124569999999886  87643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.83  E-value=2.6  Score=39.32  Aligned_cols=206  Identities=10%  Similarity=0.015  Sum_probs=102.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.||+.+...     ..+++||+.++....+....                 ...-++++.. ++++|+.+.....  .
T Consensus        55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-----------------~~~~~~i~~~~dg~l~v~~~~~~~--~  110 (333)
T 2dg1_A           55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-----------------KANPAAIKIHKDGRLFVCYLGDFK--S  110 (333)
T ss_dssp             TSCEEEEETTT-----CEEEEECTTTCCEEEEEECS-----------------SSSEEEEEECTTSCEEEEECTTSS--S
T ss_pred             CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-----------------CCCcceEEECCCCcEEEEeCCCCC--C
Confidence            56788876532     46999999988876654211                 1111233332 5677776532211  1


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                      ...+++||+.++....+...  .+.. .....+.+  ++.+|+....+........+++||+.+.+...+...  .   .
T Consensus       111 ~~~i~~~d~~~~~~~~~~~~--~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~  182 (333)
T 2dg1_A          111 TGGIFAATENGDNLQDIIED--LSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I---S  182 (333)
T ss_dssp             CCEEEEECTTSCSCEEEECS--SSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E---S
T ss_pred             CceEEEEeCCCCEEEEEEcc--CccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C---C
Confidence            24699999998876644321  1111 11222333  457777543221111245699999887776655321  0   1


Q ss_pred             CCceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCC--CcEEeccc--CCCCCCCCCccEEEEE-CCeEEEEeccCCCCC
Q 010551          194 YDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEI--KGDLVTGRAGHAGITI-DENWYIVGGGDNNNG  267 (507)
Q Consensus       194 ~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~--~~W~~~~~--~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~  267 (507)
                      ...+++...+ +.+|+....     .+.+++||+.+  .....+..  ....+.......++.- ++++|+....+    
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~----  253 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ----  253 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT----
T ss_pred             cccceEECCCCCEEEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC----
Confidence            1122333334 457775432     24689999854  22322110  0001111111122332 45777764321    


Q ss_pred             cceEEEEECCCCcEEEe
Q 010551          268 CQETIVLNMTKLAWSIL  284 (507)
Q Consensus       268 ~~~~~~~d~~~~~W~~v  284 (507)
                       ..+.+||+.......+
T Consensus       254 -~~v~~~d~~g~~~~~~  269 (333)
T 2dg1_A          254 -GRVLVFNKRGYPIGQI  269 (333)
T ss_dssp             -TEEEEECTTSCEEEEE
T ss_pred             -CEEEEECCCCCEEEEE
Confidence             3588899865544444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.82  E-value=2.6  Score=39.42  Aligned_cols=157  Identities=13%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCC--CcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEEC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~  175 (507)
                      ++..++.|+.+.      .+.+||+..  ..+..+..   +........++.+  ++.+++.|+.+.      .+.++|.
T Consensus       118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred             CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence            456666666432      378888743  23443331   1111112223333  456677777653      4778887


Q ss_pred             CCCcEEEeccCCCCCCCCCCceEEEEcC--CEEEEEcCCCCCCCCCcEEEEECCCC------cEEecccCCCCCCCCCcc
Q 010551          176 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTN------EWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       176 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~~------~W~~~~~~~~~p~~r~~~  247 (507)
                      .+..|..+......  ...-.++....+  ...++.|+.++     .+.++|+...      .|..+.... ......-.
T Consensus       183 ~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~  254 (330)
T 2hes_X          183 YDDDWECVAVLNGH--EGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVY  254 (330)
T ss_dssp             ETTEEEEEEEECCC--SSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEE
T ss_pred             CCCCeeEEEEccCC--CCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeecc-cccccceE
Confidence            77777655432110  001111222222  33555666442     3556665332      344332111 00111222


Q ss_pred             EEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEe
Q 010551          248 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       248 ~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v  284 (507)
                      +++...+.+++.||.++     .+.+||..+..|..+
T Consensus       255 ~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~  286 (330)
T 2hes_X          255 NVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVF  286 (330)
T ss_dssp             EEEECTTSCEEEEETTS-----CEEEEEEETTEEEEE
T ss_pred             EEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEE
Confidence            33333445666666443     367788878777654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.79  E-value=0.62  Score=44.67  Aligned_cols=200  Identities=7%  Similarity=-0.014  Sum_probs=96.3

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCE-EEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQK-LYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~-iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~   80 (507)
                      ..+|.+|+...+...+...    .....+....- ++. |++............++.+|+.+..+..+....        
T Consensus       168 ~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~--------  235 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA--------  235 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCC--------
T ss_pred             ceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccC--------
Confidence            3578899988887777621    11122222222 243 444432111112357999999887766554310        


Q ss_pred             cCCCcCCCCCccceeEEEE--CCE-EEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEE
Q 010551           81 DSGLLEVLPPMSDHCMVKW--GTK-LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLII  156 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~  156 (507)
                               +........+  +++ |++.+ ..... ....++++|+.++....+..   .+.  .. .+..- ++++++
T Consensus       236 ---------~~~~~~~~~~spdg~~l~~~~-~~~~~-~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~  298 (396)
T 3c5m_A          236 ---------EGESCTHEFWIPDGSAMAYVS-YFKGQ-TDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMV  298 (396)
T ss_dssp             ---------TTEEEEEEEECTTSSCEEEEE-EETTT-CCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEE
T ss_pred             ---------CCccccceEECCCCCEEEEEe-cCCCC-ccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEE
Confidence                     0111112222  344 44443 22211 12459999999998776652   221  11 22223 566666


Q ss_pred             EcCCCCC----------CCccCcEEEEECCCCcEEEeccCCCCC------CCCCCceEEEE-cCCEEEEEcCCCCCCCCC
Q 010551          157 FGGEDRS----------RKLLNDVHFLDLETMTWDAVEVTQTPP------APRYDHSAALH-ANRYLIVFGGCSHSIFFN  219 (507)
Q Consensus       157 ~GG~~~~----------~~~~n~~~~~d~~t~~W~~~~~~~~~p------~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~  219 (507)
                      +++.+..          ......++.+|+.+.....+.......      ........+.. +++.|++.....+   ..
T Consensus       299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~---~~  375 (396)
T 3c5m_A          299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG---VP  375 (396)
T ss_dssp             EEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SC
T ss_pred             EecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC---Cc
Confidence            5443210          012357999999888776664321100      00001112222 3444544433222   24


Q ss_pred             cEEEEECCCCcEEec
Q 010551          220 DLHVLDLQTNEWSQP  234 (507)
Q Consensus       220 ~i~~~d~~~~~W~~~  234 (507)
                      .+|.+|+.+..++.+
T Consensus       376 ~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          376 AIYIADVPESYKHLE  390 (396)
T ss_dssp             EEEEEECCTTCC---
T ss_pred             eEEEEEEcccccccc
Confidence            699999888776653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.77  E-value=3.1  Score=40.06  Aligned_cols=105  Identities=13%  Similarity=0.046  Sum_probs=53.3

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCE-EEEEcCCCCCCCCCcEEEEECCCC
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ++.+++.|+.++      .+.+||+.+..-......   .......+++...++. +++.|+.+     ..+.+||+.+.
T Consensus       258 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~  323 (420)
T 3vl1_A          258 YGKYVIAGHVSG------VITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSP  323 (420)
T ss_dssp             TTEEEEEEETTS------CEEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCC
Confidence            456677776543      489999987763332211   1111122233333443 66666654     36889998875


Q ss_pred             cE--EecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCC
Q 010551          230 EW--SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       230 ~W--~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                      .-  ..+..  .  ....-.++...++.+++.|+.++     .+.++|+..
T Consensus       324 ~~~~~~~~~--~--~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~~  365 (420)
T 3vl1_A          324 ECPVGEFLI--N--EGTPINNVYFAAGALFVSSGFDT-----SIKLDIISD  365 (420)
T ss_dssp             TSCSEEEEE--S--TTSCEEEEEEETTEEEEEETTTE-----EEEEEEECC
T ss_pred             cCchhhhhc--c--CCCCceEEEeCCCCEEEEecCCc-----cEEEEeccC
Confidence            32  22211  0  11111233334677777776443     366666554

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=94.77  E-value=3.6  Score=40.72  Aligned_cols=188  Identities=16%  Similarity=0.187  Sum_probs=97.2

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      ++++|+|-|.        ..|.||..+++.....-.| +|  . --++....+++|+|-|.        ..++||..+.+
T Consensus       158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~g-i~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~  217 (460)
T 1qhu_A          158 DEGILFFQGN--------RKWFWDLTTGTKKERSWPA-VG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE  217 (460)
T ss_dssp             SSEEEEEETT--------EEEEEETTTTEEEEECCTT-SC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred             CCeEEEEecc--------cEEEEecccceeecccCCC-CC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence            6788999873        3899999988765432222 22  2 23555567899999884        36777765432


Q ss_pred             ------------EEEeccCCC---------------CCCCC-CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          180 ------------WDAVEVTQT---------------PPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       180 ------------W~~~~~~~~---------------~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                                  |..+...|.               .+.+. ..-+++...++.+|+|-|.       ..|++|.....+
T Consensus       218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~-------~yWR~~~~~~~~  290 (460)
T 1qhu_A          218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS-------HYWRLDTNRDGW  290 (460)
T ss_dssp             CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT-------EEEECTTGGGCC
T ss_pred             ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC-------EEEEEecCCCCc
Confidence                        222111110               01111 2223333246678988773       466666543322


Q ss_pred             Eeccc---CCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCC------CCCC--CCCCce
Q 010551          232 SQPEI---KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR------NPLA--SEGLSV  300 (507)
Q Consensus       232 ~~~~~---~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~------~~~~--~~~~~~  300 (507)
                      .....   -+.+|.  .--++...++.+|+|=|       +.+|+|+..+. .+.++..|..      .|..  ..+.. 
T Consensus       291 ~p~~Is~~WpglP~--~IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~ID-  359 (460)
T 1qhu_A          291 HSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVD-  359 (460)
T ss_dssp             CCEEGGGTCTTSCS--SCSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCC-
T ss_pred             CccchhhhccCCCC--CCcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCccc-
Confidence            11111   122333  23455556789999965       35788886532 2222211111      0111  11122 


Q ss_pred             EEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       301 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      +++....+..+|+|-|      +..|.||..
T Consensus       360 AA~~~~~~~ktyfFkG------~~ywryd~~  384 (460)
T 1qhu_A          360 AAFVCPGSSRLHIMAG------RRLWWLDLK  384 (460)
T ss_dssp             EEECCTTCCEEEEEET------TEEEEEEGG
T ss_pred             EEEEeCCCCEEEEEEC------CEEEEEECC
Confidence            2223334567888876      568899976

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=94.75  E-value=2.8  Score=41.21  Aligned_cols=159  Identities=9%  Similarity=-0.006  Sum_probs=78.4

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      +.+++.|+.+      ..+.+||+.++........+.  .  ....++.+ ++.+++.|+.+      +.+.+||+.+++
T Consensus       210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h--~--~~v~~~~~sd~~~l~s~~~d------~~v~vwd~~~~~  273 (450)
T 2vdu_B          210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFGH--K--HFVSSICCGKDYLLLSAGGD------DKIFAWDWKTGK  273 (450)
T ss_dssp             CEEEEEEETT------SCEEEEEESCTTCEEEECCCC--S--SCEEEEEECSTTEEEEEESS------SEEEEEETTTCC
T ss_pred             CcEEEEEcCC------CcEEEEECCCCceeeeeecCC--C--CceEEEEECCCCEEEEEeCC------CeEEEEECCCCc
Confidence            6677777653      248888988776443321111  1  11122222 66667777754      368999998876


Q ss_pred             EEEeccCCC----------C-----------CCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEEC--CC-CcEEecc
Q 010551          180 WDAVEVTQT----------P-----------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL--QT-NEWSQPE  235 (507)
Q Consensus       180 W~~~~~~~~----------~-----------p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~--~~-~~W~~~~  235 (507)
                      ....-..+.          .           +.......++...++.++++++...    +.+.+|++  .+ ..+..+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d----~~i~iw~~~~~~~~~l~~~~  349 (450)
T 2vdu_B          274 NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT----KCIIILEMSEKQKGDLALKQ  349 (450)
T ss_dssp             EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC----SEEEEEEECSSSTTCEEEEE
T ss_pred             EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC----CeEEEEEeccCCCCceeecc
Confidence            433221100          0           0011111222233333444443211    46888888  33 3444432


Q ss_pred             cCCCCCCCCCccEEEEECCeEEEEeccCCC----CCcceEEEEECCCCcEE
Q 010551          236 IKGDLVTGRAGHAGITIDENWYIVGGGDNN----NGCQETIVLNMTKLAWS  282 (507)
Q Consensus       236 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~----~~~~~~~~~d~~~~~W~  282 (507)
                      ..   +.+....+++...+.+++..+....    ...-.+|.++..++.|.
T Consensus       350 ~~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          350 II---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             EE---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             Ee---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence            21   1112223444556677776654321    22346788888888775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.75  E-value=1.7  Score=39.03  Aligned_cols=213  Identities=12%  Similarity=0.006  Sum_probs=99.8

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+++||+.......++.    ......+++++. ++.||+...      ...+++||+.......+....          
T Consensus        47 ~i~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~~----------  106 (270)
T 1rwi_B           47 RVVKLATGSTGTTVLPF----NGLYQPQGLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFDG----------  106 (270)
T ss_dssp             EEEEECC-----EECCC----CSCCSCCCEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCCS----------
T ss_pred             cEEEecCCCcccceEee----CCcCCcceeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecCC----------
Confidence            34555655544443331    111223344443 467888764      236889998876544332111          


Q ss_pred             CCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCC
Q 010551           83 GLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGE  160 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~  160 (507)
                             ...-++++.. +++||+....      ...+++|+..+......... ...   .-..++.- ++++|+....
T Consensus       107 -------~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~~---~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          107 -------LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-GLN---DPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             -------CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-SCC---SCCCEEECTTCCEEEEEGG
T ss_pred             -------cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-cCC---CceeEEEeCCCCEEEEECC
Confidence                   0111233333 5678886532      23588887766654432211 111   11222222 4577776442


Q ss_pred             CCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCC
Q 010551          161 DRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  240 (507)
Q Consensus       161 ~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  240 (507)
                            .+.+.+||+.+..-...... ..   ..-.+++...++.+|+....+     +.+++||+....-.....    
T Consensus       170 ------~~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~~~~~~~~~~----  230 (270)
T 1rwi_B          170 ------NNRVVKLEAESNNQVVLPFT-DI---TAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLPF----  230 (270)
T ss_dssp             ------GTEEEEECTTTCCEEECCCS-SC---CSEEEEEECTTCCEEEEETTT-----SCEEEECTTCSCCEECCC----
T ss_pred             ------CCEEEEEecCCCceEeeccc-CC---CCceEEEECCCCCEEEEECCC-----CcEEEEcCCCCcceeecc----
Confidence                  24689999887654433211 11   112233333455688765422     468899987654332210    


Q ss_pred             CCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECC
Q 010551          241 VTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       241 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~  277 (507)
                      .......+++.- ++++|+....+     +.+.+|++.
T Consensus       231 ~~~~~p~~i~~~~~g~l~v~~~~~-----~~v~~~~~~  263 (270)
T 1rwi_B          231 TGLNTPLAVAVDSDRTVYVADRGN-----DRVVKLTSL  263 (270)
T ss_dssp             CSCSCEEEEEECTTCCEEEEEGGG-----TEEEEECCC
T ss_pred             CCCCCceeEEECCCCCEEEEECCC-----CEEEEEcCC
Confidence            001112233332 35777775432     246666644

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.72  E-value=5.3  Score=42.44  Aligned_cols=198  Identities=6%  Similarity=0.028  Sum_probs=99.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.|+|-.  .     ..+++||+.++++.........           ...+...-++++.- ++.|++ |....    
T Consensus       383 ~g~lWigt--~-----~GL~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~i~~d~~g~lWi-gT~~~----  439 (758)
T 3ott_A          383 EQQLWIAT--D-----GSINRYDYATRQFIHYNIVDNT-----------GTYNTNWTYYIFEDTAGQLWI-STCLG----  439 (758)
T ss_dssp             TSCEEEEE--T-----TEEEEEETTTTEEEEEEEECCC-------------CBSSSEEEEEECTTSEEEE-EESSS----
T ss_pred             CCCEEEEe--C-----CcHhhcCcCCCcEEEeecCCCc-----------CCCCCceEEEEEEcCCCCEEE-EECCC----
Confidence            45676632  1     3589999999988876532210           00111112233332 466766 32211    


Q ss_pred             cceEEEEECCC------CcEE---EeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEec
Q 010551          116 SMIVRFIDLET------NLCG---VMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  184 (507)
Q Consensus       116 ~~~~~~yd~~t------~~W~---~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~  184 (507)
                        -+++||+.+      ..+.   .......++..  ...+...  ++.|+++||..      +-+++||+.+.++..+.
T Consensus       440 --Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~  509 (758)
T 3ott_A          440 --GIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM--FINQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLF  509 (758)
T ss_dssp             --CEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS--CEEEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEEC
T ss_pred             --ceEEEccccccccCCcceecccccccccccccc--eeeeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEec
Confidence              277887653      2232   11111112211  1122222  45788866653      24999999999998874


Q ss_pred             cCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCC
Q 010551          185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       185 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                      .. ..+......+++.-.++.|++ |..      +-+.+||+.++.+..... ..+|. ...++++.-++.|++...   
T Consensus       510 ~~-~~~~~~~~~~i~~d~~g~lWi-gt~------~Gl~~~~~~~~~~~~~~~-~gl~~-~~i~~i~~~~g~lWi~t~---  576 (758)
T 3ott_A          510 AD-ELTGEKSPNYLLCDEDGLLWV-GFH------GGVMRINPKDESQQSISF-GSFSN-NEILSMTCVKNSIWVSTT---  576 (758)
T ss_dssp             TT-TSCGGGCEEEEEECTTSCEEE-EET------TEEEEECC--CCCCBCCC-CC----CCEEEEEEETTEEEEEES---
T ss_pred             CC-CcCCCcccceEEECCCCCEEE-Eec------CceEEEecCCCceEEecc-cCCCc-cceEEEEECCCCEEEECC---
Confidence            32 111111112233333565775 332      248999998887765431 22332 223334444667777532   


Q ss_pred             CCCcceEEEEECCCCcEEEe
Q 010551          265 NNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       265 ~~~~~~~~~~d~~~~~W~~v  284 (507)
                          +.+..||+.+......
T Consensus       577 ----~Gl~~~~~~~~~~~~~  592 (758)
T 3ott_A          577 ----NGLWIIDRKTMDARQQ  592 (758)
T ss_dssp             ----SCEEEEETTTCCEEEC
T ss_pred             ----CCeEEEcCCCceeEEe
Confidence                2478999999887654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=94.68  E-value=1.9  Score=39.90  Aligned_cols=229  Identities=11%  Similarity=0.059  Sum_probs=104.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      ++.+++.|+.+     ..+.++|..++.-...-...               . .........-++++++.|+.+      
T Consensus        24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~---------------~-~~v~~~~~~~~~~~l~s~s~d------   76 (304)
T 2ynn_A           24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQVT---------------E-TPVRAGKFIARKNWIIVGSDD------   76 (304)
T ss_dssp             SSSEEEEEETT-----SEEEEEETTTTEEEEEEECC---------------S-SCEEEEEEEGGGTEEEEEETT------
T ss_pred             CCCEEEEEcCC-----CcEEEEECCCCceeEEeecc---------------C-CcEEEEEEeCCCCEEEEECCC------
Confidence            45566666643     35888998876533221111               0 011111122245556666543      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~  194 (507)
                      ..+.+||+.++.-...-. +    -.....++.+  ++.+++.|+.+.      .+.++|+.+..=......+    ...
T Consensus        77 ~~i~vwd~~~~~~~~~~~-~----h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~~----h~~  141 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFE-A----HPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNWALEQTFEG----HEH  141 (304)
T ss_dssp             SEEEEEETTTCCEEEEEE-C----CSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTTEEEEEECC----CCS
T ss_pred             CEEEEEECCCCcEEEEEe-C----CCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCcchhhhhcc----cCC
Confidence            348889998876332210 1    1111222333  345666777653      4888888665211111111    111


Q ss_pred             CceEEEE-c-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE----CCeEEEEeccCCCCCc
Q 010551          195 DHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYIVGGGDNNNGC  268 (507)
Q Consensus       195 ~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~  268 (507)
                      .-..+.+ . +..+++.|+.+     ..+.+||+.+..-......+   ..+ ....+.+    ++.+++.|+.++    
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~~~l~s~s~D~----  208 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTTG---QER-GVNYVDYYPLPDKPYMITASDDL----  208 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETT-----SEEEEEETTCSSCSEEEECC---CTT-CEEEEEECCSTTCCEEEEEETTS----
T ss_pred             cEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCccceeccC---CcC-cEEEEEEEEcCCCCEEEEEcCCC----
Confidence            1122233 2 44467777755     35888887653211100000   001 1111222    345666666433    


Q ss_pred             ceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       269 ~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                       .+.++|+.+..-  +..+.+.      ......+...++..+++.|+.++    .+.++|+.+.
T Consensus       209 -~i~iWd~~~~~~--~~~~~~h------~~~v~~~~~~p~~~~l~s~s~Dg----~i~iWd~~~~  260 (304)
T 2ynn_A          209 -TIKIWDYQTKSC--VATLEGH------MSNVSFAVFHPTLPIIISGSEDG----TLKIWNSSTY  260 (304)
T ss_dssp             -EEEEEETTTTEE--EEEEECC------SSCEEEEEECSSSSEEEEEETTS----CEEEEETTTC
T ss_pred             -eEEEEeCCCCcc--ceeeCCC------CCCEEEEEECCCCCEEEEEcCCC----eEEEEECCCC
Confidence             477888877642  2222211      11122233333334566677553    4666776544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.68  E-value=5.1  Score=45.22  Aligned_cols=190  Identities=11%  Similarity=0.080  Sum_probs=91.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE----CCEEEEEeccCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.++|+.++.....-...                  .....++.+    ++.+++.|+.+  
T Consensus       668 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~l~sg~~d--  722 (1249)
T 3sfz_A          668 DDSYIATCSAD-----KKVKIWDSATGKLVHTYDEH------------------SEQVNCCHFTNKSNHLLLATGSND--  722 (1249)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTCCEEEEEECC------------------SSCEEEEEECSSSSCCEEEEEETT--
T ss_pred             CCCEEEEEeCC-----CeEEEEECCCCceEEEEcCC------------------CCcEEEEEEecCCCceEEEEEeCC--
Confidence            45566666533     35889999887543322111                  111223333    23345555532  


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCC--
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT--  188 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~--  188 (507)
                          ..+.+||+.++.-.....   .  ......++.+  ++..++.|+.+      +.+.++|+.+..-........  
T Consensus       723 ----~~v~vwd~~~~~~~~~~~---~--h~~~v~~~~~sp~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          723 ----FFLKLWDLNQKECRNTMF---G--HTNSVNHCRFSPDDELLASCSAD------GTLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             ----SCEEEEETTSSSEEEEEC---C--CSSCEEEEEECSSTTEEEEEESS------SEEEEEEGGGTEEEEEEECCCCC
T ss_pred             ----CeEEEEECCCcchhheec---C--CCCCEEEEEEecCCCEEEEEECC------CeEEEEeCCCCcccceecccccc
Confidence                238899998887543321   1  1111222333  45566667654      358888887664332211100  


Q ss_pred             ----CC---CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEE-ECCeEEEEe
Q 010551          189 ----PP---APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVG  260 (507)
Q Consensus       189 ----~p---~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~G  260 (507)
                          .+   ......+++...++..+++++.      +.+.+||+.+.........+.   .....+++. -++.++++|
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~------~~v~~~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~  858 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAK------NKVLLFDIHTSGLLAEIHTGH---HSTIQYCDFSPYDHLAVIA  858 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEET------TEEEEEETTTCCEEEEEECSS---SSCCCEEEECSSTTEEEEE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcC------CcEEEEEecCCCceeEEcCCC---CCceEEEEEcCCCCEEEEE
Confidence                00   0011112222234445555542      478999998877554321111   111112222 245677777


Q ss_pred             ccCCCCCcceEEEEECCCCc
Q 010551          261 GGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       261 G~~~~~~~~~~~~~d~~~~~  280 (507)
                      +.++     .+.++|+.+..
T Consensus       859 ~~dg-----~v~vwd~~~~~  873 (1249)
T 3sfz_A          859 LSQY-----CVELWNIDSRL  873 (1249)
T ss_dssp             CSSS-----CEEEEETTTTE
T ss_pred             eCCC-----eEEEEEcCCCc
Confidence            6543     37788887764

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.64  E-value=0.7  Score=36.97  Aligned_cols=90  Identities=18%  Similarity=0.238  Sum_probs=36.0

Q ss_pred             HHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHH
Q 010551          397 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQ  472 (507)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~  472 (507)
                      +...++..+........+|......+..+...+..+|+..+..+....+++..+..+-.+++.++..+.    +.+....
T Consensus        21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~  100 (129)
T 2fxo_A           21 EFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA  100 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333334444444444444444344444333333334444444333344444444333    2233334


Q ss_pred             HHHHhHHHHHHHHH
Q 010551          473 ILRQQKSAFEQEME  486 (507)
Q Consensus       473 ~~~~~~~~~~~~~~  486 (507)
                      .+...+..++.+..
T Consensus       101 ~L~~~kkkle~e~~  114 (129)
T 2fxo_A          101 ELTAKKRKLEDECS  114 (129)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.62  E-value=0.56  Score=38.77  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=17.2

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHHHhhHHHhh
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAER  444 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~  444 (507)
                      ..+|+..+..++.....+++++..++.++++++
T Consensus        50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr   82 (168)
T 3o0z_A           50 NRELQERNRILENSKSQTDKDYYQLQAILEAER   82 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555556666666666554

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=94.57  E-value=0.7  Score=34.72  Aligned_cols=41  Identities=20%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             hHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551          405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       405 ~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~  445 (507)
                      +.....+...|.++|.+++++.+.+..++...+.+...+..
T Consensus        13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~   53 (96)
T 3q8t_A           13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ   53 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            33334455555555666666655555555555554444433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.56  E-value=3.7  Score=42.39  Aligned_cols=110  Identities=13%  Similarity=0.086  Sum_probs=58.9

Q ss_pred             CCCeEeeC-CCC--ceEEeecCCCCCC--c---cccceEEE--ECCE----EEEEcCCCCCccCCceEEEEccCCc--ee
Q 010551            3 SGSWHLEL-PYD--LWVTLPVSGARPS--P---RYKHAAAV--FDQK----LYIVGGSRNGRFLSDVQVFDLRSLA--WS   66 (507)
Q Consensus         3 ~~~~~~d~-~~~--~W~~~~~~~~~p~--~---r~~~~~~~--~~~~----iyi~GG~~~~~~~~~~~~~d~~~~~--W~   66 (507)
                      ..++++|. .+.  .|+.-+.......  +   ....+.++  .++.    ||+...      ...++.+|..+++  |+
T Consensus        73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------dg~l~AlDa~TG~~~W~  146 (599)
T 1w6s_A           73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------DGNVAALNAETGETVWK  146 (599)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------TSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------CCEEEEEECCCCCEEEe
Confidence            34788888 554  6887553111000  1   11223444  4666    877643      2469999998875  87


Q ss_pred             eeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEee
Q 010551           67 NLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVME  133 (507)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~  133 (507)
                      .-.....              .......+-++.++.||+-++... ......++.||..|++  |+.-.
T Consensus       147 ~~~~~~~--------------~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          147 VENSDIK--------------VGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EECCCGG--------------GTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred             ecCCCCC--------------ccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEcC
Confidence            5322110              000112233456888776443211 1123469999999886  87653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.55  E-value=4  Score=42.79  Aligned_cols=189  Identities=12%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|+.++.-...-...                  ......+.+  ++..++.|+.+.   
T Consensus       441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~h------------------~~~v~~~~~s~~~~~l~s~s~D~---  494 (694)
T 3dm0_A          441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFVGH------------------TKDVLSVAFSLDNRQIVSASRDR---  494 (694)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTTEEEEEEECC------------------SSCEEEEEECTTSSCEEEEETTS---
T ss_pred             CCCEEEEEeCC-----CcEEEEECCCCcceeEEeCC------------------CCCEEEEEEeCCCCEEEEEeCCC---
Confidence            55666666643     45888998876433221110                  011122222  455556665432   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEEC--C--EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVG--S--RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~--~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p  190 (507)
                         .+.+||.....-..+..  .....+....++.+.  +  .+++.|+.+.      .+.++|+.+.+-...-. +.  
T Consensus       495 ---~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~-~h--  560 (694)
T 3dm0_A          495 ---TIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTLA-GH--  560 (694)
T ss_dssp             ---CEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEEC-CC--
T ss_pred             ---EEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEEc-CC--
Confidence               37778876543222221  111111222333342  2  4566666543      58899998766433211 00  


Q ss_pred             CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcce
Q 010551          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~  270 (507)
                       ...-.+++...++.+++.|+.+     ..+.++|+.++.-...     .......++++...+..+++++..     ..
T Consensus       561 -~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~-----~~  624 (694)
T 3dm0_A          561 -TGYVSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGKKLYS-----LEANSVIHALCFSPNRYWLCAATE-----HG  624 (694)
T ss_dssp             -SSCEEEEEECTTSSEEEEEETT-----SBCEEEETTTTEEEEC-----CBCSSCEEEEEECSSSSEEEEEET-----TE
T ss_pred             -CCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEEE-----ecCCCcEEEEEEcCCCcEEEEEcC-----CC
Confidence             1111223333455577777754     3588899887764321     111112233333334334444422     23


Q ss_pred             EEEEECCCCcE
Q 010551          271 TIVLNMTKLAW  281 (507)
Q Consensus       271 ~~~~d~~~~~W  281 (507)
                      +.++|+.+..-
T Consensus       625 i~iwd~~~~~~  635 (694)
T 3dm0_A          625 IKIWDLESKSI  635 (694)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCCC
Confidence            78888887653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.50  E-value=3.5  Score=39.44  Aligned_cols=142  Identities=13%  Similarity=0.035  Sum_probs=72.1

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcC-cEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCCC--cEEEeccCCCCCC
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGG-HSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPA  191 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t~--~W~~~~~~~~~p~  191 (507)
                      .+.+||+.++.-...... ..+.+... ..++.+   ++.+++.|+.+.      .+.+||+...  .-..+..     .
T Consensus       181 ~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~-----h  248 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYHG-----H  248 (380)
T ss_dssp             CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEECC-----C
T ss_pred             cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEECC-----c
Confidence            488899988875443211 12222222 122233   457888888764      4888888632  1222211     0


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCC--CCCC-ccEEEE-ECCeEEEEeccCCCCC
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--TGRA-GHAGIT-IDENWYIVGGGDNNNG  267 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--~~r~-~~~~~~-~~~~l~v~GG~~~~~~  267 (507)
                      ...-.+++...++..++.|+.++     .+.+||+.++.-...-......  .... -.+++. .++.+++.|+.++   
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---  320 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---  320 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS---
T ss_pred             CCCeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC---
Confidence            11122333444555777777653     5889999887644321111110  0011 112222 2567777776443   


Q ss_pred             cceEEEEECCCCcE
Q 010551          268 CQETIVLNMTKLAW  281 (507)
Q Consensus       268 ~~~~~~~d~~~~~W  281 (507)
                        .+.++|+.+..-
T Consensus       321 --~i~vwd~~~~~~  332 (380)
T 3iz6_a          321 --DCYVWDTLLAEM  332 (380)
T ss_dssp             --CEEEEETTTCCE
T ss_pred             --CEEEEECCCCce
Confidence              478899876653

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=94.47  E-value=3.5  Score=39.30  Aligned_cols=203  Identities=16%  Similarity=0.274  Sum_probs=117.8

Q ss_pred             CeEe--eCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEc-------cCCceeeeccccccC
Q 010551            5 SWHL--ELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-------RSLAWSNLRLETELD   75 (507)
Q Consensus         5 ~~~~--d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~-------~~~~W~~~~~~~~~~   75 (507)
                      .|.+  .+....|..-. .|..|..-.-|+.+.+++.=|.+|=.+++..-..+-++-.       ....=+.++..    
T Consensus       260 ~W~~~T~F~~spW~~t~-L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se----  334 (670)
T 3ju4_A          260 NWHMGTSFHKSPWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE----  334 (670)
T ss_dssp             EEEEEECSTTSCCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG----
T ss_pred             eeeeeeeeccCCceecc-cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh----
Confidence            3554  45667887655 3457777888999999988888873333322222222211       11112222221    


Q ss_pred             CCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC--CcCcEEEEECCE
Q 010551           76 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVT--RGGHSVTLVGSR  153 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~--r~~~~~~~~~~~  153 (507)
                                 ..+.....++-..++.||+.--.......-+++.+-+.....|+.+..    |..  ....-.+.+++.
T Consensus       335 -----------y~~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf----p~nvHhtnlPFakvgD~  399 (670)
T 3ju4_A          335 -----------YEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF----PHNVHHTTLPFAKVGDD  399 (670)
T ss_dssp             -----------GCTTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC----TTCCCSSCCCEEEETTE
T ss_pred             -----------hccccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheec----cccccccCCCcceeCCE
Confidence                       112334455666799999986554444445667777778888999863    322  233346778999


Q ss_pred             EEEEcCCCC---------CCCc---cCcEEE--EEC-----CCCcEEEecc---CCCCCCCCCCceEEEEcCCEE-EEEc
Q 010551          154 LIIFGGEDR---------SRKL---LNDVHF--LDL-----ETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFG  210 (507)
Q Consensus       154 iy~~GG~~~---------~~~~---~n~~~~--~d~-----~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~G  210 (507)
                      ||+||-.-.         +..+   ....++  .++     +.-.|..+..   .|.....-.+.+.+++.++.| ||||
T Consensus       400 l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFG  479 (670)
T 3ju4_A          400 LIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFG  479 (670)
T ss_dssp             EEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEec
Confidence            999986321         1111   122333  233     3345776643   355566666777788888876 7889


Q ss_pred             CCC-----------------CCCCCCcEEEEECC
Q 010551          211 GCS-----------------HSIFFNDLHVLDLQ  227 (507)
Q Consensus       211 G~~-----------------~~~~~~~i~~~d~~  227 (507)
                      |-+                 +.....|+|.|.+.
T Consensus       480 gEd~~np~s~gdN~~k~~~~~~Ghp~dlY~~ri~  513 (670)
T 3ju4_A          480 GEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMK  513 (670)
T ss_dssp             EBCSCCCCTTTTTTTCCTTSTTCCCCEEEEEEEE
T ss_pred             CcccCCccccccccccCccccCCCCcceEEEEEE
Confidence            854                 12344578888754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.46  E-value=0.78  Score=45.13  Aligned_cols=147  Identities=7%  Similarity=0.055  Sum_probs=76.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      ++.+++.|+.++      .+.+||+.++.-.....   .........++.+   ++.+++.|+.++      .+.++|+.
T Consensus       131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~---~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIK---GIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS------CEEEECSSCCSCCEEEC---CCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETT
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCCceeEEE---ccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeecc
Confidence            456777777543      38888888776443321   1111112223333   456667777653      48889998


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE---C
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---D  253 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~  253 (507)
                      +.....+.....  ......++....++.+++.|+.+     ..+.++|+....-..+      ......-..+.+   +
T Consensus       196 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~------~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          196 GNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKELWNL------RMHKKKVTHVALNPCC  262 (435)
T ss_dssp             SCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCBCCCS------BCCSSCEEEEEECTTC
T ss_pred             CCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcceeEEE------ecccceEEeeeecCCC
Confidence            877665543211  12222334444555577777754     3588888865432111      111111122233   2


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCCC
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      +.+++.|+.++     .+.+||+.+.
T Consensus       263 ~~~~~s~s~d~-----~v~iwd~~~~  283 (435)
T 4e54_B          263 DWFLATASVDQ-----TVKIWDLRQV  283 (435)
T ss_dssp             SSEEEEEETTS-----BCCEEETTTC
T ss_pred             ceEEEEecCcc-----eeeEEecccc
Confidence            35676766443     3557777654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=94.44  E-value=2.1  Score=45.00  Aligned_cols=242  Identities=10%  Similarity=-0.033  Sum_probs=113.9

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCC--------ccCCceEEEEccCCcee--eecccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNG--------RFLSDVQVFDLRSLAWS--NLRLET   72 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~--------~~~~~~~~~d~~~~~W~--~~~~~~   72 (507)
                      ..+|++|+.+++.....   ..+.......+-.-+++.++++..+..        .....++.+++.++.-.  .+....
T Consensus       147 ~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~  223 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT  223 (695)
T ss_dssp             CEEEEEETTTCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred             EEEEEEECCCCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence            34678888887764111   122222122222225555555544322        23456899998876532  221111


Q ss_pred             ccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEEC
Q 010551           73 ELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVG  151 (507)
Q Consensus        73 ~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~  151 (507)
                                     ..+....+.... +++..+++.....  ..+.++.+|..++.|..+...    .. .....+..+
T Consensus       224 ---------------~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~----~~-~~~~~~~~~  281 (695)
T 2bkl_A          224 ---------------GDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG----VG-AKYEVHAWK  281 (695)
T ss_dssp             ---------------CCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC----SS-CCEEEEEET
T ss_pred             ---------------CCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC----CC-ceEEEEecC
Confidence                           001111222222 3443333332221  256789998888888887632    11 112223345


Q ss_pred             CEEEEEcCCCCCCCccCcEEEEECCCCc---EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          152 SRLIIFGGEDRSRKLLNDVHFLDLETMT---WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       152 ~~iy~~GG~~~~~~~~n~~~~~d~~t~~---W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                      +.+|+....+.   ....++.+|+.+..   |..+....    +......+.+.++.+++....++   ...++.+++..
T Consensus       282 g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g  351 (695)
T 2bkl_A          282 DRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPED----SSASLLSVSIVGGHLSLEYLKDA---TSEVRVATLKG  351 (695)
T ss_dssp             TEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCC----SSCEEEEEEEETTEEEEEEEETT---EEEEEEEETTC
T ss_pred             CcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCC----CCCeEEEEEEECCEEEEEEEECC---EEEEEEEeCCC
Confidence            56555544322   13569999987765   88875421    11111122233666776654332   24688888765


Q ss_pred             CcEEecccCCCCCCCCCccEEEE-ECC-eEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551          229 NEWSQPEIKGDLVTGRAGHAGIT-IDE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       229 ~~W~~~~~~~~~p~~r~~~~~~~-~~~-~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      ..-..+.    .|.......+.. -++ .+++...  +...-..++.||+.++..+.+.
T Consensus       352 ~~~~~l~----~~~~~~v~~~~~s~d~~~l~~~~s--s~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          352 KPVRTVQ----LPGVGAASNLMGLEDLDDAYYVFT--SFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             CEEEECC----CSSSSEECCCBSCTTCSEEEEEEE--ETTEEEEEEEEETTTCCEEEEE
T ss_pred             CeeEEec----CCCCeEEEEeecCCCCCEEEEEEc--CCCCCCEEEEEECCCCcEEEEe
Confidence            4333331    111111000000 123 3333321  1122346889999887766554

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=94.38  E-value=3.4  Score=39.41  Aligned_cols=128  Identities=16%  Similarity=0.138  Sum_probs=73.5

Q ss_pred             ccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEEC-----CCCcEEEeecCCCCCCCCcCcEEEEECC
Q 010551           78 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL-----ETNLCGVMETSGKVPVTRGGHSVTLVGS  152 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~-----~t~~W~~~~~~g~~p~~r~~~~~~~~~~  152 (507)
                      |+.-.+++..|....-|+.+.+++.-|.+|-++++.....--..|-+     ....-++..+. .........++-.+++
T Consensus       271 pW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s-ey~~~AsEPCvkyYdg  349 (670)
T 3ju4_A          271 PWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS-EYEPDASEPCIKYYDG  349 (670)
T ss_dssp             CCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG-GGCTTEEEEEEEEETT
T ss_pred             CceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechh-hhccccccchhhhhCC
Confidence            33334456667777889999999999999988776553222222211     11222222111 1112222334455799


Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCce---EEEEcCCEEEEEcCC
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS---AALHANRYLIVFGGC  212 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~---~~~~~~~~l~v~GG~  212 (507)
                      .||+.--.......-..+++-+.....|+.+..    | ...+|+   .+.+ ++.|||||--
T Consensus       350 vLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf----p-~nvHhtnlPFakv-gD~l~mFgsE  406 (670)
T 3ju4_A          350 VLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF----P-HNVHHTTLPFAKV-GDDLIMFGSE  406 (670)
T ss_dssp             EEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC----T-TCCCSSCCCEEEE-TTEEEEEEEC
T ss_pred             EEEEEecCcCCCCCcceeeeecccCCchhheec----c-ccccccCCCccee-CCEEEEEecc
Confidence            999985433333345678888888889999964    3 222332   3445 5559999864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.38  E-value=2.5  Score=43.91  Aligned_cols=156  Identities=8%  Similarity=-0.039  Sum_probs=76.4

Q ss_pred             ceEEEEECC--C-CcEEEeecCCCCCC--CCcCcEEEEE--CCEEEEEcCCCC----CCCccCcEEEEECCC------Cc
Q 010551          117 MIVRFIDLE--T-NLCGVMETSGKVPV--TRGGHSVTLV--GSRLIIFGGEDR----SRKLLNDVHFLDLET------MT  179 (507)
Q Consensus       117 ~~~~~yd~~--t-~~W~~~~~~g~~p~--~r~~~~~~~~--~~~iy~~GG~~~----~~~~~n~~~~~d~~t------~~  179 (507)
                      ..+|.+++.  + +.-..+.   ..+.  .........+  +++.+++...+.    .......++.+|+.+      ..
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLT---PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECS---CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred             CeEEEEcCCCCCCCCCEecc---CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence            359999987  4 6655554   2221  1111122222  454444443321    112246799999988      66


Q ss_pred             EEEec-cCCCCCCCCCCceEEEEcCCEEEEEcCCCCC-C--CCCcEEEEECC-CC---cEEecccCCCCCCCCCccEEEE
Q 010551          180 WDAVE-VTQTPPAPRYDHSAALHANRYLIVFGGCSHS-I--FFNDLHVLDLQ-TN---EWSQPEIKGDLVTGRAGHAGIT  251 (507)
Q Consensus       180 W~~~~-~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-~--~~~~i~~~d~~-~~---~W~~~~~~~~~p~~r~~~~~~~  251 (507)
                      -..+. ..     .........-.++..+++...+.. .  ..++++++|+. ++   ....+...   . .......+.
T Consensus       179 ~~~l~~~~-----~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~  249 (662)
T 3azo_A          179 VRELSDDA-----HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEW  249 (662)
T ss_dssp             SEESSCSC-----SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEE
T ss_pred             eeEEEecC-----CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---C-CceEcceEE
Confidence            65553 21     111112222234434444332221 1  23579999998 56   34433210   0 111112222


Q ss_pred             E-CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccC
Q 010551          252 I-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       252 ~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~  287 (507)
                      . ++++|+.+..+   ....+|.+|+.+..+..+...
T Consensus       250 spdg~l~~~~~~~---~~~~l~~~~~~~~~~~~l~~~  283 (662)
T 3azo_A          250 APDGSLIVATDRT---GWWNLHRVDPATGAATQLCRR  283 (662)
T ss_dssp             CTTSCEEEEECTT---SSCEEEEECTTTCCEEESSCC
T ss_pred             CCCCeEEEEECCC---CCeEEEEEECCCCceeecccc
Confidence            2 56666665432   234799999988888887543

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=94.33  E-value=0.47  Score=35.89  Aligned_cols=35  Identities=3%  Similarity=0.144  Sum_probs=20.2

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~  445 (507)
                      +...|..+|..+++.+.+...++...+.++.+.++
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~   59 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI   59 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666665555555555555444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.33  E-value=0.21  Score=40.46  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             HHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          408 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       408 ~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      .+.+...|++++++..+++..+.+++...+.+++..++...+++.++.++++++.+++
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666666666666666666666666666666665555543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.31  E-value=1.4  Score=42.68  Aligned_cols=156  Identities=17%  Similarity=0.085  Sum_probs=77.8

Q ss_pred             EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                      .+++.|+.+.      .+.+||+.++.......   .........++.+  ++.+++.|+.+      +.+.+||+.+.+
T Consensus       145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  209 (402)
T 2aq5_A          145 NVLLSAGCDN------VILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGT  209 (402)
T ss_dssp             TEEEEEETTS------CEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTE
T ss_pred             CEEEEEcCCC------EEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCc
Confidence            4677776532      38999999886544321   0111112233333  45666777654      359999998876


Q ss_pred             EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcE--EecccCCCCCCCCCccEEEEE-CC-e
Q 010551          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW--SQPEIKGDLVTGRAGHAGITI-DE-N  255 (507)
Q Consensus       180 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W--~~~~~~~~~p~~r~~~~~~~~-~~-~  255 (507)
                      -...-..+  ........++...++.+++.|...  ..-..+.+||+.+..-  ...    .........+++.. ++ .
T Consensus       210 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~  281 (402)
T 2aq5_A          210 VVAEKDRP--HEGTRPVHAVFVSEGKILTTGFSR--MSERQVALWDTKHLEEPLSLQ----ELDTSSGVLLPFFDPDTNI  281 (402)
T ss_dssp             EEEEEECS--SCSSSCCEEEECSTTEEEEEEECT--TCCEEEEEEETTBCSSCSEEE----ECCCCSSCEEEEEETTTTE
T ss_pred             eeeeeccC--CCCCcceEEEEcCCCcEEEEeccC--CCCceEEEEcCccccCCceEE----eccCCCceeEEEEcCCCCE
Confidence            43332111  111112344445567677776211  1124688999876432  111    01111112222333 33 4


Q ss_pred             EEEEeccCCCCCcceEEEEECCCCc--EEEec
Q 010551          256 WYIVGGGDNNNGCQETIVLNMTKLA--WSILT  285 (507)
Q Consensus       256 l~v~GG~~~~~~~~~~~~~d~~~~~--W~~v~  285 (507)
                      +++.|+.++     .+.+||+.+..  ...+.
T Consensus       282 l~~~g~~dg-----~i~i~d~~~~~~~~~~l~  308 (402)
T 2aq5_A          282 VYLCGKGDS-----SIRYFEITSEAPFLHYLS  308 (402)
T ss_dssp             EEEEETTCS-----CEEEEEECSSTTCEEEEE
T ss_pred             EEEEEcCCC-----eEEEEEecCCCcceEeec
Confidence            555664333     47788877765  44443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.29  E-value=3.9  Score=41.87  Aligned_cols=198  Identities=12%  Similarity=0.049  Sum_probs=99.9

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccC-CCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT-QTPPAP  192 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~-~~~p~~  192 (507)
                      ...+++.|..+.....+.   ..+.++.-|....- ++ ++|+...      ..|.+.++|+.+++-...-.. |..|.+
T Consensus       319 ~g~v~~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Php  389 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHP  389 (567)
T ss_dssp             TTEEEEEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred             CCeEEEEecCCCccceee---eeeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence            446888888877654444   23344444443332 23 4444332      146799999999875544444 555555


Q ss_pred             CCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCc-----EEecccCCCCCCCCCccEEEEE--CCeEEEEeccCC
Q 010551          193 RYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE-----WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDN  264 (507)
Q Consensus       193 r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~-----W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~  264 (507)
                      ..+..+ ... .+.+|+.+-.+    .+.+.++|..+..     |+.+....... ....+ +...  +.++||---.+.
T Consensus       390 g~g~~~-~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-~g~~~-i~~~p~~~~l~v~~~~~~  462 (567)
T 1qks_A          390 GRGANF-VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPALG-GGSLF-IKTHPNSQYLYVDATLNP  462 (567)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCC-EECCTTCSEEEEECTTCS
T ss_pred             ccceee-ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEecCC-CCCEE-EEeCCCCCeEEEecCCCC
Confidence            433332 333 35577654322    1368888887633     76653321111 11111 1122  246777532221


Q ss_pred             C-CCcceEEEEECCCC-------cEEEecc-----CCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          265 N-NGCQETIVLNMTKL-------AWSILTS-----VKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       265 ~-~~~~~~~~~d~~~~-------~W~~v~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      + ...+.+.+||+.+.       .+..++.     ++..     ..+.........+.++++.-+......+.+.++|..
T Consensus       463 ~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~  537 (567)
T 1qks_A          463 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG-----QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  537 (567)
T ss_dssp             SHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS-----CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CcccCceEEEEECCcccccccCCCcEEeccccccccCCC-----CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence            1 11357889998766       2344421     2111     122233334444556776522112246788899987


Q ss_pred             CCC
Q 010551          332 PRD  334 (507)
Q Consensus       332 ~~~  334 (507)
                      +..
T Consensus       538 t~~  540 (567)
T 1qks_A          538 TLE  540 (567)
T ss_dssp             TTE
T ss_pred             Cce
Confidence            653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.25  E-value=1.7  Score=41.21  Aligned_cols=149  Identities=9%  Similarity=0.053  Sum_probs=71.0

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC-CcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVT-RGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~-r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      .+..++.|+.+      ..+.+||+.++.-.....  ....+ .....++.+  +++.++.|+.+.      .+.++|+.
T Consensus        92 ~d~~l~~~s~d------g~v~lWd~~~~~~~~~~~--~~~~~H~~~V~~v~~spdg~~l~sgs~d~------~i~iwd~~  157 (344)
T 4gqb_B           92 GERGILVASDS------GAVELWELDENETLIVSK--FCKYEHDDIVSTVSVLSSGTQAVSGSKDI------CIKVWDLA  157 (344)
T ss_dssp             TTTEEEEEETT------SEEEEEEECTTSSCEEEE--EEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT
T ss_pred             CCCeEEEEECC------CEEEEEeccCCCceeEee--ccccCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECC
Confidence            44444555533      248888888775322110  00001 111223333  456777777653      48899998


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  252 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  252 (507)
                      +++-...-. +    ....-..+.+  ++..+++.|+.+     +.+.+||+.+.+-...-   ...........+..  
T Consensus       158 ~~~~~~~~~-~----h~~~V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          158 QQVVLSSYR-A----HAAQVTCVAASPHKDSVFLSCSED-----NRILLWDTRCPKPASQI---GCSAPGYLPTSLAWHP  224 (344)
T ss_dssp             TTEEEEEEC-C----CSSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTSSSCEEEC---C----CCCEEEEEECS
T ss_pred             CCcEEEEEc-C----cCCceEEEEecCCCCCceeeeccc-----cccccccccccceeeee---ecceeeccceeeeecC
Confidence            875433211 1    1111112222  233467777654     35888998876543310   11111111122222  


Q ss_pred             -CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          253 -DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                       ++++++.|+.++     .+.++|+.+..
T Consensus       225 ~~~~~l~sg~~dg-----~v~~wd~~~~~  248 (344)
T 4gqb_B          225 QQSEVFVFGDENG-----TVSLVDTKSTS  248 (344)
T ss_dssp             SCTTEEEEEETTS-----EEEEEESCC--
T ss_pred             CCCcceEEeccCC-----cEEEEECCCCc
Confidence             346777776443     47788887653

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=94.22  E-value=0.22  Score=48.52  Aligned_cols=37  Identities=5%  Similarity=0.130  Sum_probs=16.2

Q ss_pred             hHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       428 e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ++++.++.++.+++.+-.+++-||..|+++..++|++
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL  150 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL  150 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444433333

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=94.18  E-value=2.1  Score=45.40  Aligned_cols=222  Identities=11%  Similarity=0.053  Sum_probs=105.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEcc---CCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLR---SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYK  111 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~---~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~  111 (507)
                      |+.+|.+-- ..+.....+|+.+..   .+.|+.+-.....          ...  .........+  +++.++++....
T Consensus       118 G~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l----------~~~--~~~~~~~~~~SPDG~~la~~~~~~  184 (741)
T 1yr2_A          118 GASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTW----------AKD--GATALDAWAASDDGRLLAYSVQDG  184 (741)
T ss_dssp             TTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGC----------C------EEEEEEEECTTSSEEEEEEEET
T ss_pred             CCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHh----------ccC--CCEEEEeEEECCCCCEEEEEEcCC
Confidence            566655432 222224667888876   6677765322110          000  0011122222  555555554332


Q ss_pred             CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCC--------CCccCcEEEEECCCCcE--E
Q 010551          112 KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRS--------RKLLNDVHFLDLETMTW--D  181 (507)
Q Consensus       112 ~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~--------~~~~n~~~~~d~~t~~W--~  181 (507)
                      ... ...++++|+.++........    .... ...+...++.++++..+..        ......++.+++.+..-  .
T Consensus       185 G~e-~~~i~v~dl~tg~~~~~~~~----~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~  258 (741)
T 1yr2_A          185 GSD-WRTVKFVGVADGKPLADELK----WVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ  258 (741)
T ss_dssp             TCS-EEEEEEEETTTCCEEEEEEE----EEES-CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE
T ss_pred             CCc-eEEEEEEECCCCCCCCccCC----Ccee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE
Confidence            221 35699999999987654211    1110 1112211233333333221        11245688899877652  1


Q ss_pred             EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC--c-EEecccCCCCCCCCCccEEEEECCeEEE
Q 010551          182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN--E-WSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       182 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~--~-W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      .+..  ....+........-.+++.+++.........+++|++|+.+.  . |..+....   ... .......++.+++
T Consensus       259 lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~-~~~~~~dg~~l~~  332 (741)
T 1yr2_A          259 PVFA--TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL---KAQ-WDFVDGVGDQLWF  332 (741)
T ss_dssp             EEEC--CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS---SSC-EEEEEEETTEEEE
T ss_pred             EEec--cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC---Cce-EEEEeccCCEEEE
Confidence            2211  111112222333334443344433322223578999999877  6 77763211   111 1122234566776


Q ss_pred             EeccCCCCCcceEEEEECCC--CcEEEec
Q 010551          259 VGGGDNNNGCQETIVLNMTK--LAWSILT  285 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~--~~W~~v~  285 (507)
                      ....  ......++++|+.+  ..|..+.
T Consensus       333 ~s~~--~~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          333 VSGD--GAPLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             EECT--TCTTCEEEEEECSSSSCEEEEEE
T ss_pred             EECC--CCCCCEEEEEeCCCCccccEEEe
Confidence            6432  22245799999988  5788875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=94.14  E-value=3.5  Score=37.98  Aligned_cols=148  Identities=14%  Similarity=0.056  Sum_probs=70.3

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      ++.+++.|+.+.      .+.+||..++.=......+    ......++.+   ++.+++.|+.+.      .+.++|+.
T Consensus       108 ~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~~----h~~~v~~v~~~p~~~~~l~sgs~D~------~v~iwd~~  171 (304)
T 2ynn_A          108 TKPYVLSGSDDL------TVKLWNWENNWALEQTFEG----HEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLG  171 (304)
T ss_dssp             SSSEEEEEETTS------CEEEEEGGGTTEEEEEECC----CCSCEEEEEECTTCTTEEEEEETTS------EEEEEETT
T ss_pred             CCCEEEEECCCC------eEEEEECCCCcchhhhhcc----cCCcEEEEEECCCCCCEEEEEeCCC------eEEEEECC
Confidence            445566666432      3788887765311111111    1111223333   346777777653      58888876


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEE---cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-  252 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~---~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-  252 (507)
                      +..-......+    .......+.+   .++.+++.|+.+     ..+.++|+.+..-...- .+    ....-..+.+ 
T Consensus       172 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~-~~----h~~~v~~~~~~  237 (304)
T 2ynn_A          172 QSTPNFTLTTG----QERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATL-EG----HMSNVSFAVFH  237 (304)
T ss_dssp             CSSCSEEEECC----CTTCEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEEEEE-EC----CSSCEEEEEEC
T ss_pred             CCCccceeccC----CcCcEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccceee-CC----CCCCEEEEEEC
Confidence            54311111000    0111112222   244466666654     36888998876543211 01    1111122233 


Q ss_pred             -CCeEEEEeccCCCCCcceEEEEECCCCcEE
Q 010551          253 -DENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  282 (507)
                       ++.+++.|+.++     .+.++|+.+..-.
T Consensus       238 p~~~~l~s~s~Dg-----~i~iWd~~~~~~~  263 (304)
T 2ynn_A          238 PTLPIIISGSEDG-----TLKIWNSSTYKVE  263 (304)
T ss_dssp             SSSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred             CCCCEEEEEcCCC-----eEEEEECCCCcee
Confidence             345677776543     3778888876543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=94.13  E-value=1.7  Score=40.72  Aligned_cols=234  Identities=13%  Similarity=-0.052  Sum_probs=113.2

Q ss_pred             CCCeEeeCCCCceEEeecCCCC---------------CCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCce
Q 010551            3 SGSWHLELPYDLWVTLPVSGAR---------------PSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAW   65 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~---------------p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W   65 (507)
                      ..++.||+....+..+...+..               +.....+++++.  ++.|||....      ..+..||+.++..
T Consensus        40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~  113 (322)
T 2fp8_A           40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA  113 (322)
T ss_dssp             SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred             CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence            3567778877777765431110               000123455555  5789987431      2488999887766


Q ss_pred             eeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCC-----------CCCcceEEEEECCCCcEEEe
Q 010551           66 SNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKK-----------SSDSMIVRFIDLETNLCGVM  132 (507)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~-----------~~~~~~~~~yd~~t~~W~~~  132 (507)
                      +.+.....            ..+..+ -..++..  ++.||+.-.....           ......+++||+.++....+
T Consensus       114 ~~~~~~~~------------~~~~~~-p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          114 TQLATSVD------------GVPFKW-LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             EEEESEET------------TEECSC-EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             EEecccCC------------CCcccc-cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence            55432210            001111 1223332  4678886422110           01235699999998876654


Q ss_pred             ecCCCCCCCCcCcEEEEE-C-CEEEEEcCCCCCCCccCcEEEEECCC---CcEEEeccCCCCCCCCCCceEEEEcCCEEE
Q 010551          133 ETSGKVPVTRGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET---MTWDAVEVTQTPPAPRYDHSAALHANRYLI  207 (507)
Q Consensus       133 ~~~g~~p~~r~~~~~~~~-~-~~iy~~GG~~~~~~~~n~~~~~d~~t---~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~  207 (507)
                      ......|.     .++.- + +.||+.-..      .+.+++|++..   .....+..   .+.   -..++.-.++.||
T Consensus       181 ~~~~~~p~-----gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~---~~g---P~gi~~d~~G~l~  243 (322)
T 2fp8_A          181 LKELHVPG-----GAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVK---IPN---PGNIKRNADGHFW  243 (322)
T ss_dssp             EEEESCCC-----EEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEE---CSS---EEEEEECTTSCEE
T ss_pred             ccCCccCc-----ceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEe---CCC---CCCeEECCCCCEE
Confidence            32111121     22222 2 357775322      35699999875   23443321   111   1234444455688


Q ss_pred             EEcCCCCC-----CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCC
Q 010551          208 VFGGCSHS-----IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       208 v~GG~~~~-----~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                      |.......     ...+.+.+||+.......+......+ .....+++..+++|||....     .+.+.+|++..
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~-----~~~i~~~~~~~  313 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLF-----HGSVGILVYDK  313 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSS-----CSEEEEEEC--
T ss_pred             EEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecC-----CCceEEEeccc
Confidence            76432100     01245889998654444432211111 12222344457788876421     23567777643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.06  E-value=2.2  Score=43.56  Aligned_cols=161  Identities=14%  Similarity=0.083  Sum_probs=79.9

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCC-----cEEEeccCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM-----TWDAVEVTQTP  189 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~-----~W~~~~~~~~~  189 (507)
                      .+.+.++|+.+++-......|..|.+-.+.....- ++.+|+.+..+     .+.+.++|+.+.     .|+.+..... 
T Consensus       345 ~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~-  418 (543)
T 1nir_A          345 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQG-  418 (543)
T ss_dssp             GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEEC-
T ss_pred             CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEc-
Confidence            34588899999986665555555654333332222 35777766533     246888998772     2655543211 


Q ss_pred             CCCCCCceEEEE-cCCEEEEEcCCCCC-CCCCcEEEEECCCCcEE--ecccC---C-CCCCCCCccEEEEECC-eEEEEe
Q 010551          190 PAPRYDHSAALH-ANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWS--QPEIK---G-DLVTGRAGHAGITIDE-NWYIVG  260 (507)
Q Consensus       190 p~~r~~~~~~~~-~~~~l~v~GG~~~~-~~~~~i~~~d~~~~~W~--~~~~~---~-~~p~~r~~~~~~~~~~-~l~v~G  260 (507)
                      +.... ..+... ++++||+-.-.+.. ...+.|.+||+.+.+-.  .+...   + .....|..|....-++ .+++. 
T Consensus       419 ~g~~~-~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s-  496 (543)
T 1nir_A          419 QGGGS-LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS-  496 (543)
T ss_dssp             SCSCC-CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE-
T ss_pred             CCCCc-eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE-
Confidence            11111 122223 34556652211110 12457999999987632  11110   0 1112233332222234 45543 


Q ss_pred             ccCCCCCcceEEEEECCCCcEEEe
Q 010551          261 GGDNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       261 G~~~~~~~~~~~~~d~~~~~W~~v  284 (507)
                      -+++...-+.+.++|..+..-.+.
T Consensus       497 ~~~~~~~~~~i~v~D~~t~~~~~~  520 (543)
T 1nir_A          497 VWNGKNDSSALVVVDDKTLKLKAV  520 (543)
T ss_dssp             EECCTTSCCEEEEEETTTTEEEEE
T ss_pred             eecCCCCCCeEEEEECCCceEEEe
Confidence            222222345788999998875543

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=94.00  E-value=0.75  Score=45.13  Aligned_cols=20  Identities=10%  Similarity=0.290  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~  485 (507)
                      .|+..++.+.++++.++..+
T Consensus       172 ~L~~~~~~l~~ki~~l~~~~  191 (464)
T 1m1j_B          172 VLRAVIDSLHKKIQKLENAI  191 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=93.98  E-value=2  Score=40.33  Aligned_cols=107  Identities=17%  Similarity=0.115  Sum_probs=57.7

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      +.+++.|+.++      .+.+||+.++.-.....     .......++.+   ++.+++.|+.++      .+.+||+.+
T Consensus        85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSRG------IIRIINPITMQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETTC------EEEEECTTTCCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTT
T ss_pred             CCEEEEecCCC------EEEEEEchhceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeec
Confidence            56777777542      48899988876433221     01112223333   456777777643      599999988


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      .+-...-.. .......-.+++...++..++.|+.+     +.+.+||+.+..
T Consensus       148 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  194 (366)
T 3k26_A          148 DTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKR  194 (366)
T ss_dssp             TEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHH
T ss_pred             CeEEEEecc-cccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCc
Confidence            765443210 00111112223333444466677654     368889987653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=93.97  E-value=3.2  Score=43.58  Aligned_cols=68  Identities=7%  Similarity=-0.101  Sum_probs=34.6

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCC----ccCCceEEEEccCCceeeec
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNG----RFLSDVQVFDLRSLAWSNLR   69 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~----~~~~~~~~~d~~~~~W~~~~   69 (507)
                      |..+|++|+.+.+-..+.................-+++.++++.....    .....++++|+.++.-..+.
T Consensus        36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  107 (723)
T 1xfd_A           36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD  107 (723)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred             CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence            345677788777665554211110001111222225555555543221    22468999999988765554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.90  E-value=0.35  Score=58.93  Aligned_cols=13  Identities=8%  Similarity=0.337  Sum_probs=9.3

Q ss_pred             eEeeCCCCceEEe
Q 010551            6 WHLELPYDLWVTL   18 (507)
Q Consensus         6 ~~~d~~~~~W~~~   18 (507)
                      |.+|+..+.|...
T Consensus      1252 y~~~~~~~~w~~W 1264 (3245)
T 3vkg_A         1252 YSVSIDDANWSLW 1264 (3245)
T ss_dssp             EEECTTTCSEEET
T ss_pred             EEEECCCCeeeeh
Confidence            5567778888764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=93.86  E-value=1.7  Score=40.78  Aligned_cols=189  Identities=14%  Similarity=0.092  Sum_probs=90.3

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--C---CEEEEEeccCCC
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G---TKLLILGGHYKK  112 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~---~~lyv~GG~~~~  112 (507)
                      ..+++.|+...  ....+.+||+.++..........                 .....++.+  +   +.+++.|+.+. 
T Consensus        31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~l~~~~~dg-   90 (357)
T 3i2n_A           31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEK-----------------AKPIKCGTFGATSLQQRYLATGDFGG-   90 (357)
T ss_dssp             SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEE-----------------SSCEEEEECTTCCTTTCCEEEEETTS-
T ss_pred             ceEEEecCccC--CCcEEEEEeCCCCcccceeeecc-----------------cCcEEEEEEcCCCCCCceEEEecCCC-
Confidence            36667776421  12468899998887654433221                 111122223  2   36666666432 


Q ss_pred             CCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEE-------ECCEEEEEcCCCCCCCccCcEEEEECCCCc--EE
Q 010551          113 SSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTL-------VGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WD  181 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~-------~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~  181 (507)
                           .+.+||..++.  -..+.  +. ..+  -.++..       -++..++.|+.++      .+.+||+.+..  ..
T Consensus        91 -----~i~iwd~~~~~~~~~~~~--~~-~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           91 -----NLHIWNLEAPEMPVYSVK--GH-KEI--INAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVA  154 (357)
T ss_dssp             -----CEEEECTTSCSSCSEEEC--CC-SSC--EEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSE
T ss_pred             -----eEEEEeCCCCCccEEEEE--ec-ccc--eEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcce
Confidence                 38888888765  11121  00 000  111111       2455666776543      58899987764  33


Q ss_pred             EeccCCCCCCCCCCceEE----EEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE----C
Q 010551          182 AVEVTQTPPAPRYDHSAA----LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----D  253 (507)
Q Consensus       182 ~~~~~~~~p~~r~~~~~~----~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~  253 (507)
                      .+..... ...+...+++    ...++.+++.|+.+     ..+.+||+.+..-.....     ....-.+++..    +
T Consensus       155 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          155 NMEPVQG-ENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETN-----IKNGVCSLEFDRKDIS  223 (357)
T ss_dssp             EECCCTT-SCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEE-----CSSCEEEEEESCSSSS
T ss_pred             eccccCC-CCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecC-----CCCceEEEEcCCCCCC
Confidence            3322100 0011111222    11344466666643     368999998876533211     11112233332    3


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCC
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                      +..+++|+.++     .+.+||+.+
T Consensus       224 ~~~l~~~~~dg-----~i~i~d~~~  243 (357)
T 3i2n_A          224 MNKLVATSLEG-----KFHVFDMRT  243 (357)
T ss_dssp             CCEEEEEESTT-----EEEEEEEEE
T ss_pred             CCEEEEECCCC-----eEEEEeCcC
Confidence            56667765433     466777654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.81  E-value=3.9  Score=37.35  Aligned_cols=224  Identities=9%  Similarity=0.024  Sum_probs=106.6

Q ss_pred             CCCeEeeCCCC--ceEEeecCCCCCCccccceEEE-ECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCC
Q 010551            3 SGSWHLELPYD--LWVTLPVSGARPSPRYKHAAAV-FDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDAD   77 (507)
Q Consensus         3 ~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~-~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~   77 (507)
                      ..+.++|+.+.  .|+.-..     .....|.+.+ .++.||+.+       .+.++.||+ ++.  |+.....      
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~~~W~~~~~~------   75 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLE-----KGWECNSVAATKAGEILFSY-------SKGAKMITR-DGRELWNIAAPA------   75 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECC-----TTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSCEEEEEECCT------
T ss_pred             CEEEEEECCCCeEEEEeCCC-----ccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCCEEEEEcCCC------
Confidence            44567777655  4554431     1112344443 377788743       245999999 553  5432210      


Q ss_pred             ccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCc-EEEeecCC-CCCCCCcCcEEEEECCEE
Q 010551           78 KTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSG-KVPVTRGGHSVTLVGSRL  154 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g-~~p~~r~~~~~~~~~~~i  154 (507)
                                  ...-+++..+ ++++++.....     ...++.+|+.... |+.....+ ..+...........++.+
T Consensus        76 ------------~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           76 ------------GCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY  138 (276)
T ss_dssp             ------------TCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE
T ss_pred             ------------CccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE
Confidence                        1112333333 55555553321     2358888874432 44322111 011111112223334555


Q ss_pred             EEEcCCCCCCCccCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--
Q 010551          155 IIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--  230 (507)
Q Consensus       155 y~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--  230 (507)
                      ++....      .+.+..||+. ++  |+.-..  .     ..+++....++.++|.+..+     +.+..||+.+++  
T Consensus       139 lv~~~~------~~~v~~~d~~-G~~~w~~~~~--~-----~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~  199 (276)
T 3no2_A          139 LVPLFA------TSEVREIAPN-GQLLNSVKLS--G-----TPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIV  199 (276)
T ss_dssp             EEEETT------TTEEEEECTT-SCEEEEEECS--S-----CCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEE
T ss_pred             EEEecC------CCEEEEECCC-CCEEEEEECC--C-----CccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEE
Confidence            554332      2458999987 43  654321  1     12345555566577766542     358999998765  


Q ss_pred             EEecccCCCCCCCCC-c-cEEEEE-CCeEEEEe--ccCCCC---CcceEEEEECCCC-cEEE
Q 010551          231 WSQPEIKGDLVTGRA-G-HAGITI-DENWYIVG--GGDNNN---GCQETIVLNMTKL-AWSI  283 (507)
Q Consensus       231 W~~~~~~~~~p~~r~-~-~~~~~~-~~~l~v~G--G~~~~~---~~~~~~~~d~~~~-~W~~  283 (507)
                      |+.-.  ...+..+. . .+++.. ++.+||..  |.....   ....++.+|.+.+ .|+.
T Consensus       200 w~~~~--~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          200 RRVNA--NDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             EEEEG--GGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             EEecC--CCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence            66532  11122122 1 233333 66888776  432200   1223555655433 4653

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=93.68  E-value=0.62  Score=33.82  Aligned_cols=44  Identities=20%  Similarity=0.255  Sum_probs=18.2

Q ss_pred             HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551          418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      +++.++.+.+.....+.+...++.....+..+.+..+..+++++
T Consensus         7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi   50 (81)
T 1ic2_A            7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKL   50 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33333333333333333444444444444444444444444433

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.49  E-value=5.6  Score=38.19  Aligned_cols=148  Identities=16%  Similarity=0.144  Sum_probs=72.5

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      +++.++.|+.+.      .+.+||+.+++-..... +  .  .....++.+  ++..++.|+.+      ..+.++|+.+
T Consensus       134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~~-~--h--~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAEDR------LIRIWDIENRKIVMILQ-G--H--EQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEEC-C--C--SSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEEEc-c--C--CCCEEEEEEcCCCCEEEEecCC------CcEEEEECCC
Confidence            566667776432      48899998886543321 1  1  111222333  34555666654      3588899988


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCC--CCCCCccEEEEE--
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL--VTGRAGHAGITI--  252 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~--p~~r~~~~~~~~--  252 (507)
                      ......-..     .....+++... ++.+++.|+.++     .+.+||+.++.-.........  ......-..+.+  
T Consensus       197 ~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~  266 (393)
T 1erj_A          197 GQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  266 (393)
T ss_dssp             TEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             CeeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC
Confidence            765433211     11112222222 555777777543     588899887764432100000  001111122222  


Q ss_pred             CCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          253 DENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       253 ~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      ++..++.|+.++     .+.++|+.+.
T Consensus       267 ~g~~l~s~s~d~-----~v~~wd~~~~  288 (393)
T 1erj_A          267 DGQSVVSGSLDR-----SVKLWNLQNA  288 (393)
T ss_dssp             TSSEEEEEETTS-----EEEEEEC---
T ss_pred             CCCEEEEEeCCC-----EEEEEECCCC
Confidence            456677776443     4667776543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=93.47  E-value=0.68  Score=45.19  Aligned_cols=19  Identities=16%  Similarity=0.169  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHhHHHHHH
Q 010551          465 QTIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       465 ~~le~e~~~~~~~~~~~~~  483 (507)
                      +.|+.-++.++.++++||-
T Consensus       134 rvLQsnLedq~~kIQRLEv  152 (562)
T 3ghg_A          134 QLLQKNVRAQLVDMKRLEV  152 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=93.35  E-value=5.5  Score=37.66  Aligned_cols=145  Identities=14%  Similarity=0.075  Sum_probs=70.5

Q ss_pred             CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE---cCCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       152 ~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                      +..++.|+.+      ..+.++|+.+.+-...-. +.    ......+.+   .++.+++.|+.++     .+.+||+.+
T Consensus       166 ~~~l~t~s~D------~~v~lwd~~~~~~~~~~~-~h----~~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~  229 (354)
T 2pbi_B          166 DMQILTASGD------GTCALWDVESGQLLQSFH-GH----GADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRS  229 (354)
T ss_dssp             SSEEEEEETT------SEEEEEETTTCCEEEEEE-CC----SSCEEEEEECCCSSCCEEEEEETTS-----CEEEEETTT
T ss_pred             CCEEEEEeCC------CcEEEEeCCCCeEEEEEc-CC----CCCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCC
Confidence            3445555544      358889998876433211 10    011111222   1334777777653     588999988


Q ss_pred             CcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEc
Q 010551          229 NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE  306 (507)
Q Consensus       229 ~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~  306 (507)
                      ++....-.     .....-..+.+  ++.+++.|+.++     .+.+||+.+..-..+......      ......+...
T Consensus       230 ~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~~~~------~~~~~~~~~s  293 (354)
T 2pbi_B          230 GQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSKESI------IFGASSVDFS  293 (354)
T ss_dssp             CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCTTC------CSCEEEEEEC
T ss_pred             CcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCCCc------ccceeEEEEe
Confidence            76544211     11111122223  456777777543     367888877642222111110      1122233333


Q ss_pred             CceEEEEEccCCCCcCceEEEEECCC
Q 010551          307 GEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       307 ~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      .+..+++.|+.+    ..+.++|+..
T Consensus       294 ~~g~~l~~g~~d----~~i~vwd~~~  315 (354)
T 2pbi_B          294 LSGRLLFAGYND----YTINVWDVLK  315 (354)
T ss_dssp             TTSSEEEEEETT----SCEEEEETTT
T ss_pred             CCCCEEEEEECC----CcEEEEECCC
Confidence            333455556644    4577777744

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.34  E-value=6.1  Score=40.55  Aligned_cols=108  Identities=12%  Similarity=0.019  Sum_probs=57.1

Q ss_pred             CCeEeeCCCC--ceEEeecCCCCCCcc---ccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCC
Q 010551            4 GSWHLELPYD--LWVTLPVSGARPSPR---YKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDA   76 (507)
Q Consensus         4 ~~~~~d~~~~--~W~~~~~~~~~p~~r---~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~   76 (507)
                      +++++|..+.  .|+.-........+.   ...+.++.++.||+...      ...++.+|..+++  |+........  
T Consensus        79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~~TG~~~W~~~~~~~~~--  150 (582)
T 1flg_A           79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNKNTGKVVWKKKFADHGA--  150 (582)
T ss_dssp             EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEESSSCCEEEEEECSCGGG--
T ss_pred             CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEECCCCCEEeeecCCCCCc--
Confidence            4788888765  688755321111111   12334567888888542      2469999998885  8754321100  


Q ss_pred             CccccCCCcCCCCCccceeEEEECC------EEEEEeccCCCCCCcceEEEEECCCCc--EEEe
Q 010551           77 DKTEDSGLLEVLPPMSDHCMVKWGT------KLLILGGHYKKSSDSMIVRFIDLETNL--CGVM  132 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~------~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~  132 (507)
                                  ......+-++.++      .||+ |...........++.||..|++  |+..
T Consensus       151 ------------~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          151 ------------GYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             ------------TCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             ------------CcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence                        0001112233455      5554 4322111124469999999886  8653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.30  E-value=5.2  Score=37.29  Aligned_cols=101  Identities=10%  Similarity=0.096  Sum_probs=53.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEE----ECCEEEEEeccCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK----WGTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~----~~~~lyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.++|+.++.........                   .....+.    -++.+++.|+.+  
T Consensus        97 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~~l~~~~~d--  150 (368)
T 3mmy_A           97 DGSKVFTASCD-----KTAKMWDLSSNQAIQIAQHD-------------------APVKTIHWIKAPNYSCVMTGSWD--  150 (368)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTTEEEEEEECS-------------------SCEEEEEEEECSSCEEEEEEETT--
T ss_pred             CCCEEEEEcCC-----CcEEEEEcCCCCceeecccc-------------------CceEEEEEEeCCCCCEEEEccCC--
Confidence            45556666533     36889999887755433211                   1112222    256677777653  


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                          ..+.+||+.++.-....   ..+  ....++....+.+++.++       .+.+.+||+....
T Consensus       151 ----g~i~vwd~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~  201 (368)
T 3mmy_A          151 ----KTLKFWDTRSSNPMMVL---QLP--ERCYCADVIYPMAVVATA-------ERGLIVYQLENQP  201 (368)
T ss_dssp             ----SEEEEECSSCSSCSEEE---ECS--SCEEEEEEETTEEEEEEG-------GGCEEEEECSSSC
T ss_pred             ----CcEEEEECCCCcEEEEE---ecC--CCceEEEecCCeeEEEeC-------CCcEEEEEecccc
Confidence                24888998877532221   111  122333444555544333       2357888886654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.29  E-value=5  Score=40.86  Aligned_cols=151  Identities=12%  Similarity=-0.009  Sum_probs=74.8

Q ss_pred             EEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC-CcCcEEEEE--C-CEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          103 LLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVT-RGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       103 lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~-r~~~~~~~~--~-~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                      +++.|+.+      ..+.+||..+++-...-.   .... .....++.+  + +..++.|+.++      .+.+||+.+.
T Consensus       175 ~l~~~~~d------~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~  239 (615)
T 1pgu_A          175 RSMTVGDD------GSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSG  239 (615)
T ss_dssp             EEEEEETT------TEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTC
T ss_pred             EEEEEeCC------CcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCC
Confidence            66666643      348889988776443221   1111 002233333  4 56777777543      5899999887


Q ss_pred             cEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEE
Q 010551          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       179 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      +....-...... .......+.+.++.+++.|+.+     +.+.+||+.+......-.....+......+++..++..++
T Consensus       240 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  313 (615)
T 1pgu_A          240 EFLKYIEDDQEP-VQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  313 (615)
T ss_dssp             CEEEECCBTTBC-CCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             CEeEEecccccc-cCCceEEEEEcCCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence            654432110001 1111122222244466666643     3688999988765442211111111122222333566666


Q ss_pred             EeccCCCCCcceEEEEECCCC
Q 010551          259 VGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       259 ~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      .|+.++     .+.+||+.+.
T Consensus       314 ~~~~~g-----~i~~~d~~~~  329 (615)
T 1pgu_A          314 SLSLDG-----TLNFYELGHD  329 (615)
T ss_dssp             EEETTS-----CEEEEETTEE
T ss_pred             EEECCC-----CEEEEECCCC
Confidence            666443     4677777653

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=93.27  E-value=3.9  Score=35.66  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=78.9

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCC
Q 010551           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYK  111 (507)
Q Consensus        33 ~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~  111 (507)
                      ++..++.+|+|=|       ..+|.++.....+........           ....+.....+.... ++++|+|-|.  
T Consensus        29 i~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~-----------wp~Lp~~iDAa~~~~~~~~iyfFkG~--   88 (207)
T 1pex_A           29 ITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSF-----------WPELPNRIDAAYEHPSHDLIFIFRGR--   88 (207)
T ss_dssp             EEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHH-----------CTTSCSSCCEEEEETTTTEEEEEETT--
T ss_pred             EEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHh-----------ccCCCCCccEEEEeccCCcEEEEccC--
Confidence            4456999999987       346666654433321111000           111223333332222 5899999774  


Q ss_pred             CCCCcceEEEEECCCCc---EEEeecCCCCCCCCcCcEEEE-E--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEecc
Q 010551          112 KSSDSMIVRFIDLETNL---CGVMETSGKVPVTRGGHSVTL-V--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV  185 (507)
Q Consensus       112 ~~~~~~~~~~yd~~t~~---W~~~~~~g~~p~~r~~~~~~~-~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~  185 (507)
                            .+|+|+..+-.   =..+...| +|......-++. .  ++++|+|-|.        ..|+||..+.+-..-.+
T Consensus        89 ------~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~~~d~gyP  153 (207)
T 1pex_A           89 ------KFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDYP  153 (207)
T ss_dssp             ------EEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSCC
T ss_pred             ------EEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeCC--------EEEEEeCcCccccCCCC
Confidence                  27777633211   11222112 332111222333 2  3699999873        47999987653221000


Q ss_pred             C------CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          186 T------QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       186 ~------~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      .      ..+| .... ++. ..++++|+|-|       +..|+||..+..-..
T Consensus       154 r~i~~~~~Gip-~~iD-aAf-~~~g~~YfFkg-------~~y~rf~~~~~~v~~  197 (207)
T 1pex_A          154 RLIEEDFPGIG-DKVD-AVY-EKNGYIYFFNG-------PIQFEYSIWSNRIVR  197 (207)
T ss_dssp             CBHHHHSTTSC-SCCS-EEE-EETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             ccHHHcCCCCC-CCcc-EEE-EcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence            0      0122 2222 333 34778999988       478999987766543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=93.08  E-value=4.9  Score=36.35  Aligned_cols=224  Identities=9%  Similarity=-0.031  Sum_probs=114.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.||+....     ...+.+||+. +....+.....                ...-++++.. ++.+|+....      
T Consensus        30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~~----------------~~~~~~i~~~~~g~l~v~~~~------   81 (300)
T 2qc5_A           30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPTP----------------DAKVMCLIVSSLGDIWFTENG------   81 (300)
T ss_dssp             TSCEEEEETT-----TTEEEEECTT-SCEEEEECSST----------------TCCEEEEEECTTSCEEEEETT------
T ss_pred             CCCEEEEcCC-----CCeEEEECCC-CceEEEECCCC----------------CCcceeEEECCCCCEEEEecC------
Confidence            5778886532     2468899988 66665432110                0112233332 4678876431      


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                      ...+++||+. +.+.....    |........+.+  ++.+|+....      .+.+++||+. ++.........   ..
T Consensus        82 ~~~v~~~d~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~~---~~  146 (300)
T 2qc5_A           82 ANKIGKLSKK-GGFTEYPL----PQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPNK---GS  146 (300)
T ss_dssp             TTEEEEECTT-SCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSST---TC
T ss_pred             CCeEEEECCC-CCeEEecC----CCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCCC---CC
Confidence            2359999988 77765542    211122223333  4678776432      2468999987 66665432111   11


Q ss_pred             CCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCc-cEEEEE-CCeEEEEeccCCCCCcceE
Q 010551          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG-HAGITI-DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       194 ~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~l~v~GG~~~~~~~~~~  271 (507)
                      .-+.++...++.+|+....     .+.+++||+ ++.......    +..... ..++.- ++.+|+....     ...+
T Consensus       147 ~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i  211 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQ-----NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIM-----GNKI  211 (300)
T ss_dssp             CEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT-----TTEE
T ss_pred             CceeEEECCCCCEEEEecC-----CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccC-----CCEE
Confidence            2233333344557775432     146899998 666665421    111112 233332 4577776421     2358


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEEC
Q 010551          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       272 ~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~  330 (507)
                      ++||+ +..+..+.. +..      ......+.++.+..|++....    .+.+.+|++
T Consensus       212 ~~~~~-~g~~~~~~~-~~~------~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~  258 (300)
T 2qc5_A          212 GRITT-TGEISEYDI-PTP------NARPHAITAGKNSEIWFTEWG----ANQIGRITN  258 (300)
T ss_dssp             EEECT-TCCEEEEEC-SST------TCCEEEEEECSTTCEEEEETT----TTEEEEECT
T ss_pred             EEEcC-CCcEEEEEC-CCC------CCCceEEEECCCCCEEEeccC----CCeEEEECC
Confidence            88988 555555422 111      112223344444456664421    356777776

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=92.94  E-value=0.51  Score=34.28  Aligned_cols=15  Identities=27%  Similarity=0.251  Sum_probs=5.6

Q ss_pred             HhhHHHhhhhhhhhH
Q 010551          437 QGQLVAERSRCFKLE  451 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e  451 (507)
                      ..++..++.+++.++
T Consensus        40 E~ev~~L~kKiq~lE   54 (81)
T 1ic2_A           40 EDELVALQKKLKGTE   54 (81)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.93  E-value=1.2  Score=33.15  Aligned_cols=58  Identities=22%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  448 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~  448 (507)
                      .+.++++.+.++..+.....+..+|...+.+-...-.+.++++..+..+++.+-..++
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF   64 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF   64 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555444455555556555555555555555555555555555444333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=92.85  E-value=5  Score=36.50  Aligned_cols=107  Identities=17%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       150 ~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      -++. ++.|+.+      ..+.+||+.+.+-...-.    .....-.+++...++ .++.|+.+     +.+.+||+.+.
T Consensus       194 ~~~~-~~~~~~d------g~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d-----g~v~iwd~~~~  256 (313)
T 3odt_A          194 DDGH-FISCSND------GLIKLVDMHTGDVLRTYE----GHESFVYCIKLLPNG-DIVSCGED-----RTVRIWSKENG  256 (313)
T ss_dssp             ETTE-EEEEETT------SEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTS-CEEEEETT-----SEEEEECTTTC
T ss_pred             CCCe-EEEccCC------CeEEEEECCchhhhhhhh----cCCceEEEEEEecCC-CEEEEecC-----CEEEEEECCCC
Confidence            3567 6666654      358999998765332211    001112233333455 35555543     36899999887


Q ss_pred             cEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEE
Q 010551          230 EWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~  283 (507)
                      .....-.   .+. ..-.+++.. ++. ++.|+.++     .+.+||+.+..+..
T Consensus       257 ~~~~~~~---~~~-~~i~~~~~~~~~~-~~~~~~dg-----~i~iw~~~~~~~~~  301 (313)
T 3odt_A          257 SLKQVIT---LPA-ISIWSVDCMSNGD-IIVGSSDN-----LVRIFSQEKSRWAS  301 (313)
T ss_dssp             CEEEEEE---CSS-SCEEEEEECTTSC-EEEEETTS-----CEEEEESCGGGCCC
T ss_pred             ceeEEEe---ccC-ceEEEEEEccCCC-EEEEeCCC-----cEEEEeCCCCceee
Confidence            6544311   111 111222322 345 45565433     47889988877644

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=92.80  E-value=6.2  Score=36.80  Aligned_cols=235  Identities=9%  Similarity=-0.013  Sum_probs=115.1

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCC--ceeeeccccccCCCccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTE   80 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~~~~~~~   80 (507)
                      .++++|+.+.+.......+..   ...+.+++- ++.||+....     ...+.+||+...  .-..+......      
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~---~~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~------  135 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLF---YLPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQP------  135 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTC---SSEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBC------
T ss_pred             cEEEEECCCCeEEeccCCCcc---CCceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCC------
Confidence            356777766665543321111   122334433 5678887653     246889998654  22222211110      


Q ss_pred             cCCCcCCCCCccce-eEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCC----CCCCcCcEEEEE--C
Q 010551           81 DSGLLEVLPPMSDH-CMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV----PVTRGGHSVTLV--G  151 (507)
Q Consensus        81 ~~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~----p~~r~~~~~~~~--~  151 (507)
                          .......... +++..  ++.||+..++.     ...+.+||+....-..+...|..    +........+.+  +
T Consensus       136 ----g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          136 ----GSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             ----CCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred             ----CCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence                0001111122 33333  57899987521     34599999654443334322221    111111222333  3


Q ss_pred             -CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCC--CCCCCcEEEEECCC
Q 010551          152 -SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQT  228 (507)
Q Consensus       152 -~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~  228 (507)
                       +.||+....      .+.+.+||+.+++....-...  .......+++... +.+|+..|...  ....+.+.++|+.+
T Consensus       207 ~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          207 LDQLCVADRE------NGRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             TTEEEEEETT------TTEEEEEETTTCCEEEEECCT--TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             CCEEEEEECC------CCEEEEEECCCCcEEEEEecc--ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence             789887653      346999999877765443211  1111112233333 66777666421  12334799999888


Q ss_pred             CcEEecccCCCCCCCCC-ccEEEEE-CCeEEEEeccCCCCCcceEEEEECC
Q 010551          229 NEWSQPEIKGDLVTGRA-GHAGITI-DENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       229 ~~W~~~~~~~~~p~~r~-~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~  277 (507)
                      ++....-  +..+.... .+++++- ++.+||....+     +.+++|++.
T Consensus       278 g~~~~~~--~~~~~~~~~p~~ia~~~dG~lyvad~~~-----~~I~~~~~~  321 (329)
T 3fvz_A          278 GEIIDVF--KPVRKHFDMPHDIVASEDGTVYIGDAHT-----NTVWKFTLT  321 (329)
T ss_dssp             CCEEEEE--CCSSSCCSSEEEEEECTTSEEEEEESSS-----CCEEEEEEE
T ss_pred             CeEEEEE--cCCCCccCCeeEEEECCCCCEEEEECCC-----CEEEEEeCC
Confidence            8766532  11111122 2233333 35788875432     257777654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=92.78  E-value=5.9  Score=36.47  Aligned_cols=165  Identities=6%  Similarity=-0.038  Sum_probs=79.5

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC-CCCCCCCcCcEEEEECCEEEEE----cCCCC-------CCCcc
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS-GKVPVTRGGHSVTLVGSRLIIF----GGEDR-------SRKLL  167 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-g~~p~~r~~~~~~~~~~~iy~~----GG~~~-------~~~~~  167 (507)
                      +++||+....      ...+.+|++. ++.+.+... ...+..+....++.-++.||+.    |-...       .....
T Consensus        96 dG~l~v~~~~------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~  168 (305)
T 3dr2_A           96 QQRLVHCEHG------RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH  168 (305)
T ss_dssp             TSCEEEEETT------TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred             CCCEEEEECC------CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence            5677765321      2358899986 776665421 0111111112222225678874    32210       01113


Q ss_pred             CcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCc
Q 010551          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  246 (507)
Q Consensus       168 n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  246 (507)
                      +.+++||+.+++...+. .  ..   .-.+++...+ +.||+..........+.+++|++..+...........+. ...
T Consensus       169 ~~v~~~d~~~g~~~~~~-~--~~---~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~p  241 (305)
T 3dr2_A          169 HSVYRLPPDGSPLQRMA-D--LD---HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD-GLP  241 (305)
T ss_dssp             EEEEEECSSSCCCEEEE-E--ES---SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS-SCC
T ss_pred             CeEEEEcCCCCcEEEEe-c--CC---CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC-CCC
Confidence            56999999888877664 1  11   1123333333 457776432211112579999987654322111111111 111


Q ss_pred             cEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551          247 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       247 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      ..++.- ++++|+..+       ..+++||+.......+.
T Consensus       242 dgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          242 DGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             CSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred             CeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence            223332 456776532       24889999766655553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=92.70  E-value=10  Score=41.90  Aligned_cols=75  Identities=21%  Similarity=0.203  Sum_probs=40.8

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC----CCCccCcEEEEEC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR----SRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~----~~~~~n~~~~~d~  175 (507)
                      +++.+++++..      ..++++|+.+++-..+...   ........+..-+++.+++++.+.    .....+.++++|+
T Consensus       389 DG~~la~~~~~------~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          389 NGKFAVVANDR------FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred             CCCEEEEECCC------CeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence            45555555432      3699999999987766421   111111122222455455554422    0112457999999


Q ss_pred             CCCcEEEe
Q 010551          176 ETMTWDAV  183 (507)
Q Consensus       176 ~t~~W~~~  183 (507)
                      .+.+...+
T Consensus       460 ~~g~~~~l  467 (1045)
T 1k32_A          460 EGRKIFAA  467 (1045)
T ss_dssp             TTTEEEEC
T ss_pred             CCCcEEEe
Confidence            98875544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.70  E-value=5.6  Score=35.97  Aligned_cols=220  Identities=11%  Similarity=0.079  Sum_probs=106.0

Q ss_pred             CCeEeeCCCCceEEeecCCCCCC-ccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPS-PRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~   80 (507)
                      .+.+||+....-..++..+..+. ....+.+++.  ++.||+.+..    ....+.+||+....-..+....        
T Consensus        52 ~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~~--------  119 (286)
T 1q7f_A           52 RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQIQIYNQYGQFVRKFGATI--------  119 (286)
T ss_dssp             EEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEEEEECTTSCEEEEECTTT--------
T ss_pred             EEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCCEEEEECCCCcEEEEecCcc--------
Confidence            35667766443334432221111 1223444442  6789888632    1246889995443322222110        


Q ss_pred             cCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEE
Q 010551           81 DSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~  157 (507)
                               ...-++++.. ++++|+....      ...+++||+.......+...+..    .....+.+  ++.+|+.
T Consensus       120 ---------~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~----~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          120 ---------LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL----EFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             ---------CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC----SSEEEEEECSSSEEEEE
T ss_pred             ---------CCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCcc----CCcEEEEECCCCCEEEE
Confidence                     0111233332 5678886542      24589999776554444321111    11223333  4688876


Q ss_pred             cCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccC
Q 010551          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~  237 (507)
                      ...      .+.+.+||+.......+...+...   .-.+++.-.++.+|+....+.    ..+.+||.....-..+...
T Consensus       181 ~~~------~~~i~~~~~~g~~~~~~~~~g~~~---~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~  247 (286)
T 1q7f_A          181 DNR------AHCVKVFNYEGQYLRQIGGEGITN---YPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISALESK  247 (286)
T ss_dssp             EGG------GTEEEEEETTCCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEES
T ss_pred             ECC------CCEEEEEcCCCCEEEEEccCCccC---CCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEccc
Confidence            542      356999998665444443322111   112333334566887654321    1688998765443333221


Q ss_pred             CCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEEC
Q 010551          238 GDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNM  276 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~  276 (507)
                      ....   ..++++.. ++++||... +     +.+.+|+.
T Consensus       248 ~~~~---~~~~i~~~~~g~l~vs~~-~-----~~v~v~~~  278 (286)
T 1q7f_A          248 VKHA---QCFDVALMDDGSVVLASK-D-----YRLYIYRY  278 (286)
T ss_dssp             SCCS---CEEEEEEETTTEEEEEET-T-----TEEEEEEC
T ss_pred             CCCC---cceeEEECCCCcEEEECC-C-----CeEEEEEc
Confidence            1111   12233333 567887732 1     35666664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.65  E-value=5.3  Score=35.62  Aligned_cols=234  Identities=12%  Similarity=0.022  Sum_probs=112.8

Q ss_pred             ccceEEEE-CCEEEE-EcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEE
Q 010551           29 YKHAAAVF-DQKLYI-VGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLI  105 (507)
Q Consensus        29 ~~~~~~~~-~~~iyi-~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv  105 (507)
                      ..+++++- ++.||+ ....     ...+.+||+.+..........                 ...-++++.. ++.||+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~-----------------~~~p~~i~~~~~g~l~v   82 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNG-----------------LYQPQGLAVDGAGTVYV   82 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSS-----SCEEEEECC-----EECCCCS-----------------CCSCCCEEECTTCCEEE
T ss_pred             CccceEECCCCCEEEEccCC-----CCcEEEecCCCcccceEeeCC-----------------cCCcceeEECCCCCEEE
Confidence            33444443 567888 5332     246888988776544332211                 0111233333 467887


Q ss_pred             EeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEe
Q 010551          106 LGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV  183 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~  183 (507)
                      ...       ...+++||+.+.........     .........+  ++++|+....      .+.+++|+..+......
T Consensus        83 ~~~-------~~~i~~~d~~~~~~~~~~~~-----~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           83 TDF-------NNRVVTLAAGSNNQTVLPFD-----GLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             EET-------TTEEEEECTTCSCCEECCCC-----SCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEEC
T ss_pred             EcC-------CCEEEEEeCCCceEeeeecC-----CcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEee
Confidence            754       12589999888765443211     1111222333  4578776432      24588888766654433


Q ss_pred             ccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEecc
Q 010551          184 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGG  262 (507)
Q Consensus       184 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~  262 (507)
                      ... .   ...-..++...++.+|+....     .+.+++||+....-..... ...   ....+++.. ++.+|+....
T Consensus       145 ~~~-~---~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~d~~g~l~v~~~~  211 (270)
T 1rwi_B          145 PFT-G---LNDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPF-TDI---TAPWGIAVDEAGTVYVTEHN  211 (270)
T ss_dssp             CCC-S---CCSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCC-SSC---CSEEEEEECTTCCEEEEETT
T ss_pred             ccc-c---CCCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeecc-cCC---CCceEEEECCCCCEEEEECC
Confidence            211 1   112233444445568876432     2468999988765443211 111   112233333 3478877532


Q ss_pred             CCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          263 DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       263 ~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      +     +.+.+||+....-..+.. ..       ......+.++.+..||+....    .+.+.+|++..
T Consensus       212 ~-----~~v~~~~~~~~~~~~~~~-~~-------~~~p~~i~~~~~g~l~v~~~~----~~~v~~~~~~~  264 (270)
T 1rwi_B          212 T-----NQVVKLLAGSTTSTVLPF-TG-------LNTPLAVAVDSDRTVYVADRG----NDRVVKLTSLE  264 (270)
T ss_dssp             T-----SCEEEECTTCSCCEECCC-CS-------CSCEEEEEECTTCCEEEEEGG----GTEEEEECCCG
T ss_pred             C-----CcEEEEcCCCCcceeecc-CC-------CCCceeEEECCCCCEEEEECC----CCEEEEEcCCC
Confidence            2     348889887654332211 10       012223344443356665432    35677777643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=92.53  E-value=1.4  Score=42.09  Aligned_cols=109  Identities=9%  Similarity=0.005  Sum_probs=51.0

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEE-EcCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ++..++.|+.++      .+.+||+.+..-.................... ......+++++.+     +.+.+||+.++
T Consensus       256 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~  324 (408)
T 4a11_B          256 DGLHLLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----STIAVYTVYSG  324 (408)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----TEEEEEETTTC
T ss_pred             CCCEEEEecCCC------eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----CEEEEEECcCC
Confidence            455666666543      58999998765422211111111111111111 1222234444332     36889998876


Q ss_pred             cEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          230 EWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      .-...-. +   ....-.+++.. ++.+++.|+.++     .+.++|+.+.
T Consensus       325 ~~~~~~~-~---~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~  366 (408)
T 4a11_B          325 EQITMLK-G---HYKTVDCCVFQSNFQELYSGSRDC-----NILAWVPSLY  366 (408)
T ss_dssp             CEEEEEC-C---CSSCEEEEEEETTTTEEEEEETTS-----CEEEEEECC-
T ss_pred             cceeeec-c---CCCeEEEEEEcCCCCEEEEECCCC-----eEEEEeCCCC
Confidence            6443210 1   11111122333 456777777544     3667776654

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.47  E-value=0.61  Score=56.92  Aligned_cols=14  Identities=14%  Similarity=0.354  Sum_probs=7.7

Q ss_pred             EEEEccCCceeeec
Q 010551           56 QVFDLRSLAWSNLR   69 (507)
Q Consensus        56 ~~~d~~~~~W~~~~   69 (507)
                      |.+|+.++.|....
T Consensus      1252 y~~~~~~~~w~~W~ 1265 (3245)
T 3vkg_A         1252 YSVSIDDANWSLWK 1265 (3245)
T ss_dssp             EEECTTTCSEEETT
T ss_pred             EEEECCCCeeeehh
Confidence            34455566666543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.44  E-value=8  Score=37.20  Aligned_cols=196  Identities=13%  Similarity=0.072  Sum_probs=98.7

Q ss_pred             CCCeEeeCCC--CceEEeecCCCCCCccccceEEEE---CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCC
Q 010551            3 SGSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVF---DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDAD   77 (507)
Q Consensus         3 ~~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~---~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~   77 (507)
                      .++++|+...  ..|..+..   .+....-+++++.   ++.||+.+...  ..-..++..+-...+|+.+......   
T Consensus        31 ~Gl~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g--~~g~gl~~s~D~G~tW~~~~~~~~~---  102 (394)
T 3b7f_A           31 KGAWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTG--HLGPTVFRSDDGGGNWTEATRPPAF---  102 (394)
T ss_dssp             TEEEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCC---
T ss_pred             CceEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCC--CCCccEEEeCCCCCCceECCccccC---
Confidence            4677887765  68998741   1112223344433   46788765321  0112467766666789987642110   


Q ss_pred             ccccCCCcCCCCCc-----cce--eEEEE----CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCC------
Q 010551           78 KTEDSGLLEVLPPM-----SDH--CMVKW----GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV------  140 (507)
Q Consensus        78 ~~~~~~~~~~p~~r-----~~~--~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~------  140 (507)
                              .....+     ..+  +++..    .+.||+.+.       ..-+++.+-...+|+.+......|.      
T Consensus       103 --------~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~  167 (394)
T 3b7f_A          103 --------NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTG  167 (394)
T ss_dssp             --------CCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHC
T ss_pred             --------CCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCcccccccc
Confidence                    000011     111  22222    456776542       1237877777789998753111121      


Q ss_pred             -------CCcCcEEEEEC----CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCC---CCCCC-----CCCceEEEE
Q 010551          141 -------TRGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ---TPPAP-----RYDHSAALH  201 (507)
Q Consensus       141 -------~r~~~~~~~~~----~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~---~~p~~-----r~~~~~~~~  201 (507)
                             ......++.++    +.||+..+.       ..+++.+-...+|+.+....   .+|.+     ...++++..
T Consensus       168 ~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~  240 (394)
T 3b7f_A          168 GEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQH  240 (394)
T ss_dssp             CC----CCCCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEEC
T ss_pred             ccccCCCCCCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEEC
Confidence                   01111223332    466664321       23777776778899885311   11211     122333333


Q ss_pred             cC--CEEEEEcCCCCCCCCCcEEEEECCCCcEEecc
Q 010551          202 AN--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       202 ~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      ..  +.+|+..+       ..+++.+-...+|+.+.
T Consensus       241 ~~~~~~l~vg~~-------~gl~~s~D~G~tW~~~~  269 (394)
T 3b7f_A          241 PAAPDILYQQNH-------CGIYRMDRREGVWKRIG  269 (394)
T ss_dssp             SSSTTEEEEEET-------TEEEEEETTTTEEECGG
T ss_pred             CCCCCEEEEEcC-------CeEEEeCCCCCcceECC
Confidence            32  55666322       34888888888999874

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=92.34  E-value=1.6  Score=32.77  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh----HHHHHHHHHHHHHhHHHHHHHH
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES----SQTIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~----~~~le~e~~~~~~~~~~~~~~~  485 (507)
                      +...++.++.+-.++.++|..+..+.......+..++.+...+.++..+    ...+..++-+.+.+..+++.++
T Consensus         9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~   83 (96)
T 3q8t_A            9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM   83 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444333333332211    1233444444444444444443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=92.29  E-value=2  Score=32.68  Aligned_cols=7  Identities=43%  Similarity=0.529  Sum_probs=2.6

Q ss_pred             hhhHHHH
Q 010551          448 FKLEAQI  454 (507)
Q Consensus       448 ~~~e~~~  454 (507)
                      ++|+.++
T Consensus        74 qeLqgEI   80 (121)
T 3mq7_A           74 EELEGEI   80 (121)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=92.26  E-value=7.3  Score=36.32  Aligned_cols=135  Identities=12%  Similarity=0.004  Sum_probs=68.7

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEE-EECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAA-VFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ++|+||+...+...+..    +.  .-++++ .-++.+++...       ..++.||+.++....+.....         
T Consensus        72 ~i~~~d~~~~~~~~~~~----~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~---------  129 (326)
T 2ghs_A           72 ELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELES---------  129 (326)
T ss_dssp             EEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSST---------
T ss_pred             EEEEEECCCCcEEEEEC----CC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCC---------
Confidence            57888888877665542    11  112222 23677777542       349999999988876543210         


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEEcCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIFGGE  160 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~GG~  160 (507)
                         ..+..+.....+.-++++|+.............+++|+  +++...+.....    . ...++.. ++ .+|+....
T Consensus       130 ---~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~----~-~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          130 ---DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS----I-PNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             ---TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES----S-EEEEEECTTSCEEEEEETT
T ss_pred             ---CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc----c-cCCeEEcCCCCEEEEEECC
Confidence               11111222222222566766332111112245799998  576665432101    1 1122222 33 57765432


Q ss_pred             CCCCCccCcEEEEECC
Q 010551          161 DRSRKLLNDVHFLDLE  176 (507)
Q Consensus       161 ~~~~~~~n~~~~~d~~  176 (507)
                            .+.+++||+.
T Consensus       200 ------~~~I~~~d~~  209 (326)
T 2ghs_A          200 ------VNRLMRVPLD  209 (326)
T ss_dssp             ------TCEEEEEEBC
T ss_pred             ------CCEEEEEEcc
Confidence                  3569999975

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=92.25  E-value=0.51  Score=35.28  Aligned_cols=55  Identities=15%  Similarity=0.236  Sum_probs=29.4

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ++..|+-.+++.++.+.+..++.++...+++.++..+..++.++.+++.++++.+
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD   85 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE   85 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555544443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=92.19  E-value=7.5  Score=36.27  Aligned_cols=146  Identities=10%  Similarity=-0.048  Sum_probs=75.1

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcc
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM  117 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~  117 (507)
                      +.+|+.+..     ...++.||+.++....+...                  ......+..-++++++...        .
T Consensus        61 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~------------------~~v~~i~~~~dg~l~v~~~--------~  109 (326)
T 2ghs_A           61 GTAWWFNIL-----ERELHELHLASGRKTVHALP------------------FMGSALAKISDSKQLIASD--------D  109 (326)
T ss_dssp             TEEEEEEGG-----GTEEEEEETTTTEEEEEECS------------------SCEEEEEEEETTEEEEEET--------T
T ss_pred             CEEEEEECC-----CCEEEEEECCCCcEEEEECC------------------CcceEEEEeCCCeEEEEEC--------C
Confidence            677777542     24689999988765543311                  1112222234678777541        2


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      .+++||+.+++.+.+...... .+........+  ++.+|+.............+++||  +.+...+.....     ..
T Consensus       110 gl~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-----~~  181 (326)
T 2ghs_A          110 GLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-----IP  181 (326)
T ss_dssp             EEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-----SE
T ss_pred             CEEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-----cc
Confidence            499999999998876532110 11111122233  456665321111111245799998  566655432101     11


Q ss_pred             ceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECC
Q 010551          196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       196 ~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~  227 (507)
                      .+++...+ +.+|+....     .+.|++||+.
T Consensus       182 ~~i~~s~dg~~lyv~~~~-----~~~I~~~d~~  209 (326)
T 2ghs_A          182 NSICFSPDGTTGYFVDTK-----VNRLMRVPLD  209 (326)
T ss_dssp             EEEEECTTSCEEEEEETT-----TCEEEEEEBC
T ss_pred             CCeEEcCCCCEEEEEECC-----CCEEEEEEcc
Confidence            22333323 457775432     2579999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=92.06  E-value=8.6  Score=36.69  Aligned_cols=158  Identities=10%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d  174 (507)
                      ++.+++.|+.+.      .+.+||+.+.  ....+..   .........++.+   ++.+++.|+.++      .+.+||
T Consensus        78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg------~v~iwd  142 (416)
T 2pm9_A           78 NNKIIAGALDNG------SLELYSTNEANNAINSMAR---FSNHSSSVKTVKFNAKQDNVLASGGNNG------EIFIWD  142 (416)
T ss_dssp             SSSCEEEEESSS------CEEEECCSSTTSCCCEEEE---CCCSSSCCCEEEECSSSTTBEEEECSSS------CEEBCB
T ss_pred             CCCeEEEEccCC------eEEEeecccccccccchhh---ccCCccceEEEEEcCCCCCEEEEEcCCC------eEEEEE
Confidence            455666666432      3888888771  1112211   1111111222333   256777777643      488888


Q ss_pred             CCCCcE-----EEeccCCCCCCCCCCceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCC-CCCCCCcc
Q 010551          175 LETMTW-----DAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD-LVTGRAGH  247 (507)
Q Consensus       175 ~~t~~W-----~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~-~p~~r~~~  247 (507)
                      +.+..=     ................+++...+ +.+++.|+.+     ..+.+||+.+........... ........
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceEEeccccccccCCce
Confidence            877640     01110000011112223333333 4577777754     358999998876544211110 00001222


Q ss_pred             EEEEE--C-CeEEEEeccCCCCCcceEEEEECCCC
Q 010551          248 AGITI--D-ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       248 ~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      ..+.+  + ..+++.|+.++.  ...+.+||+.+.
T Consensus       218 ~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~  250 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATATGSDN--DPSILIWDLRNA  250 (416)
T ss_dssp             EEEEECSSCTTEEEEEECCSS--SCCCCEEETTST
T ss_pred             EEEEECCCCCCEEEEEECCCC--CceEEEEeCCCC
Confidence            22333  2 357777764431  124668887764

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=92.01  E-value=0.13  Score=52.87  Aligned_cols=9  Identities=0%  Similarity=-0.064  Sum_probs=5.5

Q ss_pred             eEEEEECCC
Q 010551          270 ETIVLNMTK  278 (507)
Q Consensus       270 ~~~~~d~~~  278 (507)
                      .+.+|+..+
T Consensus       224 GI~v~~~~~  232 (575)
T 2i1j_A          224 GLNIYEKDD  232 (575)
T ss_dssp             EEEEEETTC
T ss_pred             eeEEEeCCC
Confidence            366777654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.85  E-value=2.3  Score=41.63  Aligned_cols=100  Identities=13%  Similarity=0.182  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCc----EEEeccCCCCCCCCCCceEEEE-c-CCEEEEEcCCCCCCCCCcEEEE
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMT----WDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~----W~~~~~~~~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~  224 (507)
                      ++.+++.|+.+      +.+.+||+.+..    -..+..      .......+.+ . +.++++.|+.+     +.+.+|
T Consensus       243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vw  305 (430)
T 2xyi_A          243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDA------HTAEVNCLSFNPYSEFILATGSAD-----KTVALW  305 (430)
T ss_dssp             CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEEC------CSSCEEEEEECSSCTTEEEEEETT-----SEEEEE
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCCCCcceeEeec------CCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEE
Confidence            45677776654      358999997652    111111      1111222223 2 33477777764     358899


Q ss_pred             ECCCCc--EEecccCCCCCCCCCccEEEEE---CCeEEEEeccCCCCCcceEEEEECCC
Q 010551          225 DLQTNE--WSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       225 d~~~~~--W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                      |+.+..  -..+.      .....-..+.+   +..+++.||.++     .+.+||+..
T Consensus       306 d~~~~~~~~~~~~------~h~~~v~~i~~sp~~~~~l~s~~~d~-----~i~iwd~~~  353 (430)
T 2xyi_A          306 DLRNLKLKLHSFE------SHKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSK  353 (430)
T ss_dssp             ETTCTTSCSEEEE------CCSSCEEEEEECSSCTTEEEEEETTS-----CCEEEEGGG
T ss_pred             eCCCCCCCeEEee------cCCCCEEEEEECCCCCCEEEEEeCCC-----cEEEEeCCC
Confidence            987632  11110      01111122222   235777777543     367788765

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=91.76  E-value=1.5  Score=32.84  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=40.2

Q ss_pred             HHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010551          416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       416 ~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~  486 (507)
                      +.+..+++..+.++.-+.....=+.+.++..++++++.+.+++++.++..    .+......++.++..+..++.
T Consensus         8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~   82 (103)
T 4h22_A            8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK   82 (103)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555566666677777777776666665554443    333445555555555555554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.75  E-value=2.5  Score=41.39  Aligned_cols=148  Identities=12%  Similarity=0.106  Sum_probs=67.2

Q ss_pred             EEEEcCCCCCCCccCcEEEEECCCC---cEEEeccCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          154 LIIFGGEDRSRKLLNDVHFLDLETM---TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       154 iy~~GG~~~~~~~~n~~~~~d~~t~---~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      +++.|+.++      .+.+||+.+.   .+...............++++... ++.+++.|+.+     ..+.+||+.+.
T Consensus       196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~  264 (430)
T 2xyi_A          196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNN  264 (430)
T ss_dssp             EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCS
T ss_pred             eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence            677777643      4888998762   222110000001111122222222 44466666543     36889998865


Q ss_pred             c-EEecccCCCCCCCCCccEEEEE---CCeEEEEeccCCCCCcceEEEEECCCCc--EEEeccCCCCCCCCCCCCceEEE
Q 010551          230 E-WSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLA--WSILTSVKGRNPLASEGLSVCSA  303 (507)
Q Consensus       230 ~-W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~--W~~v~~~~~~~~~~~~~~~~~~~  303 (507)
                      . ...+.   ...........+.+   +..+++.|+.++     .+.+||+.+..  -..+...        .....++.
T Consensus       265 ~~~~~~~---~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~~h--------~~~v~~i~  328 (430)
T 2xyi_A          265 NTSKPSH---TVDAHTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFESH--------KDEIFQVQ  328 (430)
T ss_dssp             CSSSCSE---EEECCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEECC--------SSCEEEEE
T ss_pred             CCCccee---EeecCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEeecC--------CCCEEEEE
Confidence            2 10000   00011111222333   235788877543     47888887532  1111111        01122222


Q ss_pred             EEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          304 IIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       304 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      ..+.+..+++.||.+    ..+.++|+..
T Consensus       329 ~sp~~~~~l~s~~~d----~~i~iwd~~~  353 (430)
T 2xyi_A          329 WSPHNETILASSGTD----RRLHVWDLSK  353 (430)
T ss_dssp             ECSSCTTEEEEEETT----SCCEEEEGGG
T ss_pred             ECCCCCCEEEEEeCC----CcEEEEeCCC
Confidence            333344567777754    3467777754

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=91.69  E-value=2.6  Score=32.67  Aligned_cols=7  Identities=29%  Similarity=0.676  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q 010551          481 FEQEMER  487 (507)
Q Consensus       481 ~~~~~~~  487 (507)
                      +.+++++
T Consensus       124 LrKELEd  130 (167)
T 4gkw_A          124 LRKELEN  130 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444443

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=91.66  E-value=7.1  Score=38.59  Aligned_cols=187  Identities=13%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCc------------eeeeccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA------------WSNLRLE   71 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~------------W~~~~~~   71 (507)
                      ..|.||..+.....-.-.| +  +. --++....+.+|+|-|       +..+.||+.+++            |-.++..
T Consensus       168 ~yw~yd~~~~~~~~~~w~g-i--~~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~gyPk~is~~w~~c~~~  236 (460)
T 1qhu_A          168 RKWFWDLTTGTKKERSWPA-V--GN-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEVPPGYPLDVRDYFLSCPGR  236 (460)
T ss_dssp             EEEEEETTTTEEEEECCTT-S--CC-CSEEEEETTEEEEEET-------TEEEEECTTTCCCCTTCCEEHHHHTSCCTTC
T ss_pred             cEEEEecccceeecccCCC-C--Cc-cchheeeCCceEEEEC-------CEEEEEcCccCcccCCCCcchhhcccCCCCC
Confidence            4688998877554322111 2  23 3444555789999988       457888876543            2221110


Q ss_pred             cccCCCccccCC--CcCCCCCc-cceeEEE-ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC---CCCCCCCcC
Q 010551           72 TELDADKTEDSG--LLEVLPPM-SDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS---GKVPVTRGG  144 (507)
Q Consensus        72 ~~~~~~~~~~~~--~~~~p~~r-~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~  144 (507)
                      +..+..+....+  ......+. .-.+++. .++++|+|-|.        ..|+||.....+......   ..+|..  -
T Consensus       237 g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~~~p~~Is~~WpglP~~--I  306 (460)
T 1qhu_A          237 GHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPST--V  306 (460)
T ss_dssp             CSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGCCCCEEGGGTCTTSCSS--C
T ss_pred             CCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCCcCccchhhhccCCCCC--C
Confidence            000000000000  00000111 1223333 46899999773        266776544332221111   123332  2


Q ss_pred             cEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEE-------Eec-cCCCCCCC----CCCceEEEEcCCEEEEEcCC
Q 010551          145 HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-------AVE-VTQTPPAP----RYDHSAALHANRYLIVFGGC  212 (507)
Q Consensus       145 ~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~-------~~~-~~~~~p~~----r~~~~~~~~~~~~l~v~GG~  212 (507)
                      -++...++++|+|=|.        .+|+|+..++ ..       .+. ..| +|..    +...+.....++++|+|-| 
T Consensus       307 DAAf~~~~~~yfFkG~--------~yw~f~~~~g-~~~~~GyPK~I~~~lG-lp~~~~~~~IDAA~~~~~~~ktyfFkG-  375 (460)
T 1qhu_A          307 DAAFSWEDKLYLIQDT--------KVYVFLTKGG-YTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG-  375 (460)
T ss_dssp             SEEEEETTEEEEEETT--------EEEEEECSBS-CEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET-
T ss_pred             cEEEEECCeEEEEeCC--------EEEEEeCCCC-ceecCCCCeEHHHhcc-CCCccccCcccEEEEeCCCCEEEEEEC-
Confidence            2444457899999773        4788876431 11       111 011 2322    1222222235678999988 


Q ss_pred             CCCCCCCcEEEEECCC
Q 010551          213 SHSIFFNDLHVLDLQT  228 (507)
Q Consensus       213 ~~~~~~~~i~~~d~~~  228 (507)
                            +..|+||...
T Consensus       376 ------~~ywryd~~~  385 (460)
T 1qhu_A          376 ------RRLWWLDLKS  385 (460)
T ss_dssp             ------TEEEEEEGGG
T ss_pred             ------CEEEEEECCC
Confidence                  4799999763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=91.64  E-value=14  Score=38.59  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=72.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++.+++.|+.+      ..+.+||+.++.-...-. +.    .....++.+  ++..++.|+.+.      .+.++|+..
T Consensus       441 ~g~~l~sgs~D------g~v~vwd~~~~~~~~~~~-~h----~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~  503 (694)
T 3dm0_A          441 DGQFALSGSWD------GELRLWDLAAGVSTRRFV-GH----TKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLG  503 (694)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEE-CC----SSCEEEEEECTTSSCEEEEETTS------CEEEECTTS
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCcceeEEe-CC----CCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCC
Confidence            55666666643      348899998876433211 11    111222233  455666676553      477788755


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEE-cC--CEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALH-AN--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  252 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  252 (507)
                      ..-..+...+  ...+....++.+ .+  ..+++.|+.+     ..+.+||+.+..-...-     .........+.+  
T Consensus       504 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          504 ECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRSTL-----AGHTGYVSTVAVSP  571 (694)
T ss_dssp             CEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECT
T ss_pred             CcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEEE-----cCCCCCEEEEEEeC
Confidence            4332232111  111111222333 22  2356666654     35888998876644321     111111122223  


Q ss_pred             CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          253 DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       253 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ++.+++.|+.++     .+.++|+.+..
T Consensus       572 dg~~l~sg~~Dg-----~i~iwd~~~~~  594 (694)
T 3dm0_A          572 DGSLCASGGKDG-----VVLLWDLAEGK  594 (694)
T ss_dssp             TSSEEEEEETTS-----BCEEEETTTTE
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCc
Confidence            457777777543     36788887764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=91.62  E-value=7.9  Score=35.34  Aligned_cols=28  Identities=11%  Similarity=0.256  Sum_probs=18.8

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeecc
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRL   70 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~   70 (507)
                      +.+++.|+.+     ..+.++|+.++.|..+..
T Consensus        67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~   94 (297)
T 2pm7_B           67 GTILASCSYD-----GKVMIWKEENGRWSQIAV   94 (297)
T ss_dssp             CSEEEEEETT-----TEEEEEEBSSSCBCCCEE
T ss_pred             CCEEEEEcCC-----CEEEEEEcCCCceEEEEE
Confidence            4566666643     358889998887765543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=91.61  E-value=9.4  Score=36.23  Aligned_cols=66  Identities=15%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             CCeEEEEeccCC-----CCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEE
Q 010551          253 DENWYIVGGGDN-----NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV  327 (507)
Q Consensus       253 ~~~l~v~GG~~~-----~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~  327 (507)
                      ++++|+....++     ....+.++++|+.+.+-  +..++..      . .....+.+++.+||+.++      +.+.+
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~------~-p~~ia~spdg~~l~v~n~------~~v~v  329 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGR------D-ALSMTIDQQRNLMLTLDG------GNVNV  329 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECT------T-CCEEEEETTTTEEEEECS------SCEEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecC------C-eeEEEECCCCCEEEEeCC------CeEEE
Confidence            468888754111     12245799999988753  3333221      1 233444555567887552      77888


Q ss_pred             EECCCC
Q 010551          328 MRLKPR  333 (507)
Q Consensus       328 ~~~~~~  333 (507)
                      +|..+.
T Consensus       330 ~D~~t~  335 (361)
T 2oiz_A          330 YDISQP  335 (361)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            998665

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=91.60  E-value=2  Score=31.69  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010551          464 SQTIENEVQILRQQKSAFEQEMERATSVQT  493 (507)
Q Consensus       464 ~~~le~e~~~~~~~~~~~~~~~~~~~~~~~  493 (507)
                      ..+.+.....+..++..++..+.+.+.+.+
T Consensus        58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           58 MKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445556666666666667776666655443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=91.59  E-value=3.1  Score=31.87  Aligned_cols=74  Identities=9%  Similarity=0.109  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhhhhHHHH----hhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          391 IDAIKEDKRVLELSLTEVR----TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ...|..+...|+..+....    .....|+.++..+....+.....+..+++.+..+.....-.-..++.++.++-+.
T Consensus        12 ~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a   89 (111)
T 2v66_B           12 NQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA   89 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4455555555555444433    3455577777777777777666667777777666666555556666666655444

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=91.51  E-value=1.1  Score=31.89  Aligned_cols=24  Identities=4%  Similarity=0.104  Sum_probs=10.3

Q ss_pred             hHHHHHhhHHHhhhhhhhhHHHHH
Q 010551          432 ELSSVQGQLVAERSRCFKLEAQIA  455 (507)
Q Consensus       432 el~~~~~~~~~~~~~~~~~e~~~~  455 (507)
                      .++..+.+++.+++++..+++.++
T Consensus        14 klq~~E~rN~~Le~~v~~le~~Le   37 (79)
T 3cvf_A           14 KVQDLETRNAELEHQLRAMERSLE   37 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH
Confidence            344444444444444444444443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.45  E-value=12  Score=36.93  Aligned_cols=180  Identities=11%  Similarity=-0.026  Sum_probs=82.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCC----ceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSL----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYK  111 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~  111 (507)
                      +..||+-|..     .+.+++||..++    +-.+.-...+.          ........-|.+... ++ |||-.--+.
T Consensus        95 r~~l~v~~l~-----s~~I~viD~~t~p~~p~~~k~ie~~~~----------~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~  158 (462)
T 2ece_A           95 RRFLIVPGLR-----SSRIYIIDTKPNPREPKIIKVIEPEEV----------KKVSGYSRLHTVHCGPDA-IYISALGNE  158 (462)
T ss_dssp             SCEEEEEBTT-----TCCEEEEECCSCTTSCEEEEEECHHHH----------HHHHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred             CCEEEEccCC-----CCeEEEEECCCCCCCceeeeeechhhc----------ccccCCCcccceeECCCe-EEEEcCCCc
Confidence            5677777764     367999999876    22221100000          000001122333444 45 777332222


Q ss_pred             CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEE--c-------CCCCCC---CccCcEEEEECCC
Q 010551          112 KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIF--G-------GEDRSR---KLLNDVHFLDLET  177 (507)
Q Consensus       112 ~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~--G-------G~~~~~---~~~n~~~~~d~~t  177 (507)
                      .......+.++|..|++-...-..+..|. -.++-+-..  ++.+|.-  |       |.....   .+.+.+++||+.+
T Consensus       159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             TSCSCCEEEEECTTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             CCCCCCeEEEEECCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence            33345679999999887443322222222 122222222  3334433  1       222221   3468899999988


Q ss_pred             CcEEEeccCCC-CCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecc
Q 010551          178 MTWDAVEVTQT-PPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       178 ~~W~~~~~~~~-~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      .+-...-..|. -..+|  +....+  ++.++||..-.+-....+.+++|....+.|....
T Consensus       238 ~k~~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          238 RKRIHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             TEEEEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             CcEeeEEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence            64222111110 00011  111111  2456777554222233456666555557787654

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=91.07  E-value=2.5  Score=42.16  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=15.2

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010551          462 ESSQTIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       462 ~~~~~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                      ++++++|.++..+.++++.++.|.+++
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          443 KKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445556666666666666555555543

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=91.03  E-value=3.9  Score=33.49  Aligned_cols=71  Identities=24%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             HHHHHHhhccchhHHHhHHHHHhhHHHh-------hhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHH
Q 010551          416 REKIDEVNSTHSELSKELSSVQGQLVAE-------RSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       416 ~~~l~~~~~~~~e~~~el~~~~~~~~~~-------~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~  484 (507)
                      ...++..+....+++.+|..+.+.+..+       .+++...+.++..++.+++..+    ..++.+..+++.+..++.+
T Consensus        34 EERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~  113 (155)
T 2efr_A           34 EERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE  113 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444544444444333       3455556666666666666554    4445555555555555554


Q ss_pred             HH
Q 010551          485 ME  486 (507)
Q Consensus       485 ~~  486 (507)
                      +.
T Consensus       114 L~  115 (155)
T 2efr_A          114 LY  115 (155)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.83  E-value=1.3  Score=44.51  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=10.4

Q ss_pred             hhhHHHHHHhhccchhHHHhHHHH
Q 010551          413 SRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       413 ~~l~~~l~~~~~~~~e~~~el~~~  436 (507)
                      .++.+.+.+.++..++.++++++.
T Consensus       370 ~~le~~~~~~~~~~~~~~~~~~~~  393 (487)
T 3oja_A          370 KALDEQVSNGRRAHAELDGTLQQA  393 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHh
Confidence            334444444444444444444433

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=90.80  E-value=9.9  Score=34.99  Aligned_cols=208  Identities=9%  Similarity=-0.017  Sum_probs=101.6

Q ss_pred             CCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CC
Q 010551           24 RPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GT  101 (507)
Q Consensus        24 ~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~  101 (507)
                      .|.+...+..++- ++.||+.--.     ...++.||+... ........                  ..-++++.. ++
T Consensus        28 ~p~~~~pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~-~~~~~~~~------------------~~p~gia~~~dG   83 (306)
T 2p4o_A           28 FPVNTFLENLASAPDGTIFVTNHE-----VGEIVSITPDGN-QQIHATVE------------------GKVSGLAFTSNG   83 (306)
T ss_dssp             ECTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTTCC-EEEEEECS------------------SEEEEEEECTTS
T ss_pred             CCCCCCcceEEECCCCCEEEEeCC-----CCeEEEECCCCc-eEEEEeCC------------------CCceeEEEcCCC
Confidence            3444455555543 5678887531     246899998764 22221111                  112333333 56


Q ss_pred             EEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCcE
Q 010551          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTW  180 (507)
Q Consensus       102 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W  180 (507)
                      +||+......    ...++.||+.+++.+.+..   .+..+.....+.. ++.+|+.-.      ..+.++++|+.+..-
T Consensus        84 ~l~vad~~~~----~~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           84 DLVATGWNAD----SIPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSG  150 (306)
T ss_dssp             CEEEEEECTT----SCEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEE
T ss_pred             cEEEEeccCC----cceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcE
Confidence            7887653211    1248899999998877652   2333333333322 446666432      134799999876532


Q ss_pred             EE--eccCCC--CC-CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC-CcEEecccCCCCCCCCCccEEEEE-C
Q 010551          181 DA--VEVTQT--PP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITI-D  253 (507)
Q Consensus       181 ~~--~~~~~~--~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~-~  253 (507)
                      ..  ......  .+ ........+..+++.||+.--     ..+.+++|++.. +...........   .....+++- +
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~-----~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~d  222 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT-----EKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVE  222 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET-----TTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTT
T ss_pred             eEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC-----CCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCC
Confidence            11  111000  11 111111222445667888532     235799999875 322111100011   111233333 4


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCCCcEE
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  282 (507)
                      +++||.-..     .+.+.+||+. ....
T Consensus       223 G~l~va~~~-----~~~V~~~~~~-G~~~  245 (306)
T 2p4o_A          223 GNLYGATHI-----YNSVVRIAPD-RSTT  245 (306)
T ss_dssp             CCEEEECBT-----TCCEEEECTT-CCEE
T ss_pred             CCEEEEeCC-----CCeEEEECCC-CCEE
Confidence            678877432     2358889876 4443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=90.74  E-value=23  Score=39.10  Aligned_cols=113  Identities=8%  Similarity=-0.035  Sum_probs=53.6

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ++|++|+....-.++..   .+. .....+..-+++.++++... .......++++|..++.-..+......        
T Consensus        34 ~l~~~~~~gg~~~~lt~---~~~-~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~--------  101 (1045)
T 1k32_A           34 DLWEHDLKSGSTRKIVS---NLG-VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK--------  101 (1045)
T ss_dssp             EEEEEETTTCCEEEEEC---SSS-EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE--------
T ss_pred             cEEEEECCCCcEEEeee---CCC-cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCc--------
Confidence            56788887777666652   111 11111111245444444321 001124689999988765444322100        


Q ss_pred             CCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEe
Q 010551           83 GLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  132 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  132 (507)
                          .-..+.....+.+  ++++++.++..........+|.+|+.++.-..+
T Consensus       102 ----~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l  149 (1045)
T 1k32_A          102 ----STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL  149 (1045)
T ss_dssp             ----EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC
T ss_pred             ----ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEe
Confidence                0000111123333  455655555433222345688888877765544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=90.60  E-value=4.8  Score=37.10  Aligned_cols=165  Identities=9%  Similarity=-0.007  Sum_probs=79.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEE----eccCC-
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLIL----GGHYK-  111 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~----GG~~~-  111 (507)
                      ++.||+....     ...+..||+. ++...+.....            ..+..+....++.-++.||+.    |-... 
T Consensus        96 dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           96 QQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYA------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             TSCEEEEETT-----TTEEEEECTT-SCEEEEECEET------------TEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred             CCCEEEEECC-----CCEEEEECCC-CCEEEEEeccC------------CCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence            5667765321     1358888886 66655532211            001111222222336778874    43211 


Q ss_pred             ------CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEe
Q 010551          112 ------KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAV  183 (507)
Q Consensus       112 ------~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~  183 (507)
                            .......+++||+.+++.+.+. ....|     ..++.. ++ .||+...... ....+.+++||+........
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p-----~gl~~spdg~~lyv~~~~~~-~~~~~~i~~~~~~~~~l~~~  230 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP-----NGLAFSPDEQTLYVSQTPEQ-GHGSVEITAFAWRDGALHDR  230 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE-----EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEE
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEe-cCCCC-----cceEEcCCCCEEEEEecCCc-CCCCCEEEEEEecCCCccCC
Confidence                  0112457999999988887664 11111     122222 33 5776543211 11135799999876543221


Q ss_pred             ccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          184 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       184 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      ......+ ...-.+++.-.++.||+..+       +.|++||+.......+
T Consensus       231 ~~~~~~~-~~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~  273 (305)
T 3dr2_A          231 RHFASVP-DGLPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHI  273 (305)
T ss_dssp             EEEECCS-SSCCCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEE
T ss_pred             eEEEECC-CCCCCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEE
Confidence            1110111 11112344444555776432       3599999976555444

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=90.59  E-value=1.5  Score=32.12  Aligned_cols=30  Identities=10%  Similarity=0.223  Sum_probs=13.9

Q ss_pred             HHHHHHHHhhhhHHHHhhhhhhHHHHHHhh
Q 010551          394 IKEDKRVLELSLTEVRTENSRFREKIDEVN  423 (507)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  423 (507)
                      |+......++.+.....++.+|++.+...+
T Consensus         7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~   36 (94)
T 3jsv_C            7 LRQQLQQAEEALVAKQELIDKLKEEAEQHK   36 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            344444444444444445555555444444

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=90.58  E-value=1.5  Score=31.14  Aligned_cols=17  Identities=6%  Similarity=-0.009  Sum_probs=6.8

Q ss_pred             HHHHHhhHHHhhhhhhh
Q 010551          433 LSSVQGQLVAERSRCFK  449 (507)
Q Consensus       433 l~~~~~~~~~~~~~~~~  449 (507)
                      |..++..+...+.++++
T Consensus        33 Ls~vr~~ni~~eskL~e   49 (81)
T 1wt6_A           33 MEAIRTDNQNFASQLRE   49 (81)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444433333

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=90.58  E-value=11  Score=35.19  Aligned_cols=216  Identities=8%  Similarity=0.056  Sum_probs=105.3

Q ss_pred             CceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEcc-CCceeeeccccccCCCccccCCCcCCCCCc
Q 010551           13 DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVLPPM   91 (507)
Q Consensus        13 ~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r   91 (507)
                      ..|+.+......+. ..-.++++.++.+|+.|..      ..++. ..+ -.+|+.+......             | ..
T Consensus        66 ~tW~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~------g~i~~-S~DgG~tW~~~~~~~~~-------------~-~~  123 (327)
T 2xbg_A           66 QTWEPRTLVLDHSD-YRFNSVSFQGNEGWIVGEP------PIMLH-TTDGGQSWSQIPLDPKL-------------P-GS  123 (327)
T ss_dssp             SSCEECCCCCSCCC-CEEEEEEEETTEEEEEEET------TEEEE-ESSTTSSCEECCCCTTC-------------S-SC
T ss_pred             CCCeECCCCCCCCC-ccEEEEEecCCeEEEEECC------CeEEE-ECCCCCCceECccccCC-------------C-CC
Confidence            47988863211111 1223334457788887631      12333 333 3589887643210             1 11


Q ss_pred             cceeEEE-ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCc
Q 010551           92 SDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        92 ~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~  169 (507)
                       .+.++. -++.+|+.|..   .    .+++-.-.-.+|+.+..    +.....++++.. ++.+|++|-.       ..
T Consensus       124 -~~~i~~~~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-------G~  184 (327)
T 2xbg_A          124 -PRLIKALGNGSAEMITNV---G----AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-------GS  184 (327)
T ss_dssp             -EEEEEEEETTEEEEEETT---C----CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-------SS
T ss_pred             -eEEEEEECCCCEEEEeCC---c----cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-------Cc
Confidence             133333 36788887742   1    24443323557999863    112222333333 3466665532       13


Q ss_pred             EEEEECC-CCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC-CCcEEecccCCCCCCCCCcc
Q 010551          170 VHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       170 ~~~~d~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~  247 (507)
                      +++-+-. -..|+.+..    +.+...+.++...++.+|+.+..+      .+++.+.. -.+|+.+.. +..+.....+
T Consensus       185 ~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~G------~~~~s~~D~G~tW~~~~~-~~~~~~~~~~  253 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNGG------KIAFSDPDNSENWGELLS-PLRRNSVGFL  253 (327)
T ss_dssp             EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETTT------EEEEEETTEEEEECCCBC-TTSSCCSCEE
T ss_pred             EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeCCc------eEEEecCCCCCeeEeccC-CcccCCcceE
Confidence            5544322 578998853    334444555554566688776421      24444323 457887532 1122222233


Q ss_pred             EEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          248 AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       248 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      +++.. ++.+|++|+. +     .+++-.-...+|+.+..
T Consensus       254 ~v~~~~~~~~~~~g~~-g-----~i~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          254 DLAYRTPNEVWLAGGA-G-----ALLCSQDGGQTWQQDVD  287 (327)
T ss_dssp             EEEESSSSCEEEEEST-T-----CEEEESSTTSSCEECGG
T ss_pred             EEEecCCCEEEEEeCC-C-----eEEEeCCCCcccEEcCc
Confidence            43333 4578887652 1     24333333568998763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=90.57  E-value=10  Score=34.88  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=17.9

Q ss_pred             CCE-EEEEcCCCCCccCCceEEEEc-cCCceeee
Q 010551           37 DQK-LYIVGGSRNGRFLSDVQVFDL-RSLAWSNL   68 (507)
Q Consensus        37 ~~~-iyi~GG~~~~~~~~~~~~~d~-~~~~W~~~   68 (507)
                      ++. +++.|+.+     ..+.+||+ .++....+
T Consensus        67 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~   95 (342)
T 1yfq_A           67 NTDLQIYVGTVQ-----GEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             SSSEEEEEEETT-----SCEEEECSSSSSSEEEC
T ss_pred             CCCcEEEEEcCC-----CeEEEEEeccCCceEec
Confidence            566 66667643     46899999 87765443

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=90.39  E-value=4.6  Score=39.44  Aligned_cols=73  Identities=11%  Similarity=0.222  Sum_probs=36.0

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCF-KLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~-~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      .++.+.+.+.++.+++.|.+.+++.+...+...+ ++++..+++.+=.++..+-++++.++++.+.+..+++.+
T Consensus        32 Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae  105 (497)
T 3iox_A           32 YEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAE  105 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555444322 233333333222222335555666666666666666654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=90.35  E-value=14  Score=36.08  Aligned_cols=70  Identities=9%  Similarity=0.056  Sum_probs=39.7

Q ss_pred             CCeEEEEeccC----CCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCce-EEEEEccCCCCcCceEEE
Q 010551          253 DENWYIVGGGD----NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNNEVFV  327 (507)
Q Consensus       253 ~~~l~v~GG~~----~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~  327 (507)
                      ++++||.-...    .....+++.++|+.+.+-..--.++.        .-....+..++. .+|+....    .+++.+
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--------~P~gia~spDg~~~lyv~n~~----s~~VsV  397 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--------EIDSINVSQDAEPLLYALSAG----TQTLHI  397 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--------EECEEEECCSSSCEEEEEETT----TTEEEE
T ss_pred             CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--------CcCeEEEccCCCEEEEEEcCC----CCeEEE
Confidence            46888874311    11235689999998876432111211        122333444444 77776532    578999


Q ss_pred             EECCCCC
Q 010551          328 MRLKPRD  334 (507)
Q Consensus       328 ~~~~~~~  334 (507)
                      +|..+..
T Consensus       398 ID~~t~k  404 (426)
T 3c75_H          398 YDAATGE  404 (426)
T ss_dssp             EETTTCC
T ss_pred             EECCCCC
Confidence            9987664

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=90.30  E-value=1.2  Score=37.53  Aligned_cols=15  Identities=27%  Similarity=0.142  Sum_probs=6.1

Q ss_pred             HHHhHHHHHhhHHHh
Q 010551          429 LSKELSSVQGQLVAE  443 (507)
Q Consensus       429 ~~~el~~~~~~~~~~  443 (507)
                      +++++...+.+++.+
T Consensus        90 Lr~ql~akr~EL~aL  104 (175)
T 3lay_A           90 LRQQLISKRYEYNAL  104 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344444444433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=90.30  E-value=10  Score=34.41  Aligned_cols=187  Identities=8%  Similarity=0.065  Sum_probs=93.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~  114 (507)
                      .+.+++.|..+     ..++++|+.+++  |+.-....                 ....+..+.-++++|+. +      
T Consensus         4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~-----------------~~~~~~~~~pdG~ilvs-~------   54 (276)
T 3no2_A            4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKG-----------------WECNSVAATKAGEILFS-Y------   54 (276)
T ss_dssp             CCEEEEECTTC-----SEEEEEETTTTEEEEEEECCTT-----------------CCCCEEEECTTSCEEEE-C------
T ss_pred             CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCcc-----------------CCCcCeEECCCCCEEEe-C------
Confidence            46777777533     568999998875  55432110                 12223333347778873 2      


Q ss_pred             CcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCC-cEEEeccCC-CC
Q 010551          115 DSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQ-TP  189 (507)
Q Consensus       115 ~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~~~~~-~~  189 (507)
                       .+.++.||+ +++  |+-..     +.....+++... ++.+++..+.+     ...++.+|+... .|+.....+ ..
T Consensus        55 -~~~V~~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~  122 (276)
T 3no2_A           55 -SKGAKMITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIER  122 (276)
T ss_dssp             -BSEEEEECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSS
T ss_pred             -CCCEEEECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCc
Confidence             235999999 564  65432     111122333333 45555543321     235788887433 244321111 01


Q ss_pred             CCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCC
Q 010551          190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNN  266 (507)
Q Consensus       190 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~  266 (507)
                      +.... +.+....++.+++....     .+.+..||+. ++  |+.-.  +.     ..+++..+ ++.++|++..+   
T Consensus       123 ~~~~~-~~v~~~~~G~~lv~~~~-----~~~v~~~d~~-G~~~w~~~~--~~-----~~~~~~~~~~g~~~v~~~~~---  185 (276)
T 3no2_A          123 PHAQF-RQINKNKKGNYLVPLFA-----TSEVREIAPN-GQLLNSVKL--SG-----TPFSSAFLDNGDCLVACGDA---  185 (276)
T ss_dssp             GGGSC-SCCEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEEEC--SS-----CCCEEEECTTSCEEEECBTT---
T ss_pred             ccccc-cCceECCCCCEEEEecC-----CCEEEEECCC-CCEEEEEEC--CC-----CccceeEcCCCCEEEEeCCC---
Confidence            11111 12233334435554332     2468899987 54  55421  11     12334444 56777775532   


Q ss_pred             CcceEEEEECCCCc--EEE
Q 010551          267 GCQETIVLNMTKLA--WSI  283 (507)
Q Consensus       267 ~~~~~~~~d~~~~~--W~~  283 (507)
                        ..++.||+.+++  |+.
T Consensus       186 --~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          186 --HCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             --SEEEEECTTTCCEEEEE
T ss_pred             --CeEEEEeCcCCcEEEEe
Confidence              258899998654  664

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=90.29  E-value=1.1  Score=35.93  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=13.0

Q ss_pred             hccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHH
Q 010551          423 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL  457 (507)
Q Consensus       423 ~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~  457 (507)
                      +.++.+.++.++..+.+++.++.....|+..+.+.
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~   71 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEET   71 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33344444444444444444444334444444333

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=90.27  E-value=10  Score=34.20  Aligned_cols=235  Identities=8%  Similarity=0.038  Sum_probs=114.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.||+.+..     ...+.+||+.......+......            ......-++++..  +++||+.+...    
T Consensus        40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~------------~~~~~~p~~i~~~~~~g~l~v~~~~~----   98 (286)
T 1q7f_A           40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKR------------DSQLLYPNRVAVVRNSGDIIVTERSP----   98 (286)
T ss_dssp             TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSS------------TTCBSSEEEEEEETTTTEEEEEECGG----
T ss_pred             CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCC------------cccccCceEEEEEcCCCeEEEEcCCC----
Confidence            5678887542     24688999875433333321100            0001112334442  67898876421    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                       ...+.+||.....-..+..    +. ......+.+  ++.+|+....      .+.+++||+.......+...+..   
T Consensus        99 -~~~i~~~d~~g~~~~~~~~----~~-~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~---  163 (286)
T 1q7f_A           99 -THQIQIYNQYGQFVRKFGA----TI-LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL---  163 (286)
T ss_dssp             -GCEEEEECTTSCEEEEECT----TT-CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC---
T ss_pred             -CCEEEEECCCCcEEEEecC----cc-CCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCcc---
Confidence             2358899954443333321    11 111122333  4578876542      24689999766544444321111   


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceE
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~  271 (507)
                      ..-.+++.-.++.+|+.+..     .+.+++||+.......+...+...   ...+++.. ++++||....++    ..+
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~~---~p~~i~~d~~G~l~v~~~~~~----~~i  231 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGITN---YPIGVGINSNGEILIADNHNN----FNL  231 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSSS----CEE
T ss_pred             CCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCccC---CCcEEEECCCCCEEEEeCCCC----EEE
Confidence            11233444445778886542     246999998665444432111111   11233332 457888764321    158


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       272 ~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      .+||.....-..+.....       ......+.+..+..||+...     .+.+.+|++.
T Consensus       232 ~~~~~~g~~~~~~~~~~~-------~~~~~~i~~~~~g~l~vs~~-----~~~v~v~~~~  279 (286)
T 1q7f_A          232 TIFTQDGQLISALESKVK-------HAQCFDVALMDDGSVVLASK-----DYRLYIYRYV  279 (286)
T ss_dssp             EEECTTSCEEEEEEESSC-------CSCEEEEEEETTTEEEEEET-----TTEEEEEECS
T ss_pred             EEECCCCCEEEEEcccCC-------CCcceeEEECCCCcEEEECC-----CCeEEEEEcc
Confidence            889876654444432111       11122333444446777632     2567777654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.10  E-value=11  Score=34.36  Aligned_cols=106  Identities=11%  Similarity=0.087  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE----CCEEEEEeccCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~  112 (507)
                      ++..++.|+.+     ..+.+||+.....+.+.....             +   ......+.+    ++.+++.|+.+  
T Consensus        20 ~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~g-------------H---~~~V~~v~~s~~~~g~~l~s~s~D--   76 (297)
T 2pm7_B           20 YGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTG-------------H---EGPVWRVDWAHPKFGTILASCSYD--   76 (297)
T ss_dssp             TSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECC-------------C---SSCEEEEEECCGGGCSEEEEEETT--
T ss_pred             CCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEcc-------------c---cCCeEEEEecCCCcCCEEEEEcCC--
Confidence            45666777644     358888887654433322210             0   011122332    14566666643  


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEEC----CEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                          ..+.++|+.++.|..+...   ........++.+.    +.+++.|+.++      .+.++|+.+.
T Consensus        77 ----~~v~iWd~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~g~~l~s~s~d~------~v~~wd~~~~  133 (297)
T 2pm7_B           77 ----GKVMIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPMLLVASSDG------KVSVVEFKEN  133 (297)
T ss_dssp             ----TEEEEEEBSSSCBCCCEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEEBCSS
T ss_pred             ----CEEEEEEcCCCceEEEEEe---ecCCCceeEEEeCcCCCCcEEEEEECCC------cEEEEEecCC
Confidence                2488889888876544321   1111122233332    45666666543      4777777654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.04  E-value=18  Score=36.64  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             EEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC-CCceEEEEcC-CEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          154 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR-YDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       154 iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r-~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      +++.|+.+      +.+.+||+.+.+-...-.  ...... .-.+++...+ +.+++.|+.+     ..+.+||+.+++.
T Consensus       175 ~l~~~~~d------~~v~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~  241 (615)
T 1pgu_A          175 RSMTVGDD------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGEF  241 (615)
T ss_dssp             EEEEEETT------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCCE
T ss_pred             EEEEEeCC------CcEEEEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCE
Confidence            67777654      358889987765433211  000000 1223333344 5566667654     3689999988765


Q ss_pred             EecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEE
Q 010551          232 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       232 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  282 (507)
                      ...-..........-.++...++..++.|+.++     .+.+||+.+..-.
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~  287 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKCV  287 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEEE
T ss_pred             eEEecccccccCCceEEEEEcCCCEEEEEcCCC-----cEEEEECCCCcEE
Confidence            542100000111111122222666777776432     4788998876543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=90.03  E-value=11  Score=34.40  Aligned_cols=64  Identities=11%  Similarity=0.089  Sum_probs=33.8

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCC-------cEEEeecCCCCCCCCcCcEEEEE--C--CEEEEEcCCCCCCCccCc
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETN-------LCGVMETSGKVPVTRGGHSVTLV--G--SRLIIFGGEDRSRKLLND  169 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~-------~W~~~~~~g~~p~~r~~~~~~~~--~--~~iy~~GG~~~~~~~~n~  169 (507)
                      +.+++.|+.+.      .+.+||+.++       .|..+...   ........++.+  +  +.+++.|+.+      ..
T Consensus        71 ~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~  135 (351)
T 3f3f_A           71 GRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCTL---NDSKGSLYSVKFAPAHLGLKLACLGND------GI  135 (351)
T ss_dssp             CSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------CE
T ss_pred             CCEEEEEcCCC------eEEEEecCCCcccccccCcceeeee---cccCCceeEEEEcCCCCCcEEEEecCC------Cc
Confidence            56777776542      3777777664       34444321   111122223333  2  5566677654      35


Q ss_pred             EEEEECCCCc
Q 010551          170 VHFLDLETMT  179 (507)
Q Consensus       170 ~~~~d~~t~~  179 (507)
                      +.+||+.+.+
T Consensus       136 v~iwd~~~~~  145 (351)
T 3f3f_A          136 LRLYDALEPS  145 (351)
T ss_dssp             EEEEECSSTT
T ss_pred             EEEecCCChH
Confidence            8888886643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=89.83  E-value=12  Score=34.46  Aligned_cols=111  Identities=13%  Similarity=0.079  Sum_probs=57.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE----CCEEEEEeccCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.++|+.++....+.....             +   ......+.+    ++.+++.|+.+. 
T Consensus        24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~g-------------H---~~~V~~v~~~~~~~~~~l~s~s~D~-   81 (316)
T 3bg1_A           24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRG-------------H---EGPVWQVAWAHPMYGNILASCSYDR-   81 (316)
T ss_dssp             GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEEC-------------C---SSCEEEEEECCGGGSSCEEEEETTS-
T ss_pred             CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcC-------------C---CccEEEEEeCCCCCCCEEEEEECCC-
Confidence            45666777643     358888988765433332210             0   111122332    245666666432 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--C--CEEEEEcCCCCCCCccCcEEEEECCCC-cEEEe
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAV  183 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~iy~~GG~~~~~~~~n~~~~~d~~t~-~W~~~  183 (507)
                           .+.+||+.++.|......   ........++.+  +  +.+++.|+.+.      .+.++|+.+. .|...
T Consensus        82 -----~v~iWd~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           82 -----KVIIWREENGTWEKSHEH---AGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVK  143 (316)
T ss_dssp             -----CEEEECCSSSCCCEEEEE---CCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEEC
T ss_pred             -----EEEEEECCCCcceEEEEc---cCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCccee
Confidence                 388889988877554321   111111222333  2  45677777653      4777787665 46543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=89.82  E-value=14  Score=35.08  Aligned_cols=65  Identities=14%  Similarity=0.123  Sum_probs=38.5

Q ss_pred             cCCEEEEEcCCC-----CCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEE
Q 010551          202 ANRYLIVFGGCS-----HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       202 ~~~~l~v~GG~~-----~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~  274 (507)
                      +++.+|+....+     .....+.++++|+.+.+-..-     .+.+. .++++..  +..+|+.++       +.+.+|
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-----i~~~~-p~~ia~spdg~~l~v~n~-------~~v~v~  330 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-----IPGRD-ALSMTIDQQRNLMLTLDG-------GNVNVY  330 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-----EECTT-CCEEEEETTTTEEEEECS-------SCEEEE
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-----EecCC-eeEEEECCCCCEEEEeCC-------CeEEEE
Confidence            347888875411     112346899999998875432     12222 3444444  345665432       578899


Q ss_pred             ECCCC
Q 010551          275 NMTKL  279 (507)
Q Consensus       275 d~~~~  279 (507)
                      |..+.
T Consensus       331 D~~t~  335 (361)
T 2oiz_A          331 DISQP  335 (361)
T ss_dssp             ECSSS
T ss_pred             ECCCC
Confidence            99887

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=89.78  E-value=8.3  Score=33.18  Aligned_cols=152  Identities=11%  Similarity=0.151  Sum_probs=78.2

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEEccCCc--e-eeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEecc
Q 010551           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--W-SNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH  109 (507)
Q Consensus        33 ~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W-~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~  109 (507)
                      ++.+++.+|+|-|       +.+|.++.....  . ..+...             ....|.....+....++++|+|-|.
T Consensus        11 ~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~-------------w~glP~~iDAa~~~~~g~~yfFkg~   70 (196)
T 3c7x_A           11 VAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQF-------------WRGLPASINTAYERKDGKFVFFKGD   70 (196)
T ss_dssp             EEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHH-------------STTCCSSCCEEEECTTSCEEEEETT
T ss_pred             EEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHh-------------ccCCCCCccEEEEeCCCcEEEecCC
Confidence            3457899999988       347777532100  0 111110             1122333333332347889999763


Q ss_pred             CCCCCCcceEEEEECCCCc---EEEeecCC-CCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEE-
Q 010551          110 YKKSSDSMIVRFIDLETNL---CGVMETSG-KVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-  182 (507)
Q Consensus       110 ~~~~~~~~~~~~yd~~t~~---W~~~~~~g-~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~-  182 (507)
                              .+|+|+..+..   =..+...+ .+|..... ++...  ++++|+|-|.        ..++||..+.+-.. 
T Consensus        71 --------~yw~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~g  133 (196)
T 3c7x_A           71 --------KHWVFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSE  133 (196)
T ss_dssp             --------EEEEEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEETT--------EEEEEETTTTEECTT
T ss_pred             --------EEEEEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEECC--------EEEEEeCCcccccCC
Confidence                    37888754211   11222111 13322222 22322  5799999774        47899987653211 


Q ss_pred             ----eccCCCCCCCCCCceEEEEcCC-EEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          183 ----VEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       183 ----~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                          +..-..+|  ..-.++....++ ++|+|-|       +..|+||..+..
T Consensus       134 yPk~i~~~~gip--~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~  177 (196)
T 3c7x_A          134 YPKNIKVWEGIP--ESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK  177 (196)
T ss_dssp             CSEEGGGSBTCC--SSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred             CCccHHHCCCcC--CCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence                11000122  223344444444 8999977       478999987765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=89.72  E-value=14  Score=35.08  Aligned_cols=112  Identities=12%  Similarity=0.010  Sum_probs=55.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCC--CCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEEC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--PVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~--p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~  175 (507)
                      ++..++.|+.+.      .+.+||+.++.-...-.....  ........++.+  ++.+++.|+.+      ..+.+||+
T Consensus       260 ~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~  327 (380)
T 3iz6_a          260 DGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDT  327 (380)
T ss_dssp             TSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEET
T ss_pred             CCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEEC
Confidence            456677776543      388999998864433211010  011111223333  55666667654      35899998


Q ss_pred             CCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          176 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       176 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                      .+..-......-.......-.+++...++.+++.|+.++     .+.+++++.
T Consensus       328 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-----~i~iW~~~~  375 (380)
T 3iz6_a          328 LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-----NLKIWAFSG  375 (380)
T ss_dssp             TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-----CEEEEECCS
T ss_pred             CCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-----CEEEEecCC
Confidence            776643221100000111112333334555777787653     466666654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=89.51  E-value=19  Score=36.25  Aligned_cols=146  Identities=8%  Similarity=0.013  Sum_probs=67.5

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      +++.++.|+.+      ..+.+||.....-..+.   . .  .....++.+  +++.++.++.+      ..+..||...
T Consensus       396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~---~-~--~~~v~~~~~s~d~~~l~~~~~d------~~v~~w~~~~  457 (577)
T 2ymu_A          396 DGQTIASASDD------KTVKLWNRNGQLLQTLT---G-H--SSSVWGVAFSPDDQTIASASDD------KTVKLWNRNG  457 (577)
T ss_dssp             TSSCEEEEETT------SEEEEECTTCCEEEEEE---C-C--SSCEEEEEECTTSSEEEEEETT------SEEEEEETTS
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCEEEEec---C-C--CCCeEEEEECCCCCEEEEEcCC------CEEEEEECCC
Confidence            45555666543      24777875443322222   1 1  111222233  45666666654      2478888765


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  256 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  256 (507)
                      ..-..+...     ...-.+++...++.+++.|+.+     ..+.+||.....-..+.  +.   ...-.+++.. ++++
T Consensus       458 ~~~~~~~~~-----~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~~~~~~--~h---~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          458 QLLQTLTGH-----SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLT--GH---SSSVRGVAFSPDGQT  522 (577)
T ss_dssp             CEEEEEECC-----SSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCEEEEEE--CC---SSCEEEEEECTTSSC
T ss_pred             CEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCEEEEEe--CC---CCCEEEEEEcCCCCE
Confidence            444443321     1112233334455577766643     25777886443322221  10   0011122222 4566


Q ss_pred             EEEeccCCCCCcceEEEEECCCCcEEE
Q 010551          257 YIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~~~W~~  283 (507)
                      ++.|+.++     .+.+||........
T Consensus       523 l~s~~~dg-----~v~lwd~~~~~~~~  544 (577)
T 2ymu_A          523 IASASDDK-----TVKLWNRNGQLLQT  544 (577)
T ss_dssp             EEEEETTS-----EEEEECTTSCEEEE
T ss_pred             EEEEECcC-----EEEEEeCCCCEEEE
Confidence            66666432     46778865544333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=89.44  E-value=16  Score=35.23  Aligned_cols=70  Identities=7%  Similarity=0.059  Sum_probs=39.5

Q ss_pred             CCeEEEEecc----CCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcC-ceEEEEEccCCCCcCceEEE
Q 010551          253 DENWYIVGGG----DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFV  327 (507)
Q Consensus       253 ~~~l~v~GG~----~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~  327 (507)
                      ++++||.-+.    ......+.++++|+.+.+-..--.+..        ......+..+ ...||+.-+    ..+++.+
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--------~~~~lavs~D~~~~ly~tn~----~~~~VsV  358 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--------EIDSINVSQDEKPLLYALST----GDKTLYI  358 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--------EECEEEECSSSSCEEEEEET----TTTEEEE
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--------CcceEEECCCCCeEEEEEcC----CCCeEEE
Confidence            5789987431    122235789999999987544222211        1112223333 347777533    2578899


Q ss_pred             EECCCCC
Q 010551          328 MRLKPRD  334 (507)
Q Consensus       328 ~~~~~~~  334 (507)
                      +|..+..
T Consensus       359 iD~~t~k  365 (386)
T 3sjl_D          359 HDAESGE  365 (386)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9987654

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=89.35  E-value=10  Score=32.94  Aligned_cols=153  Identities=11%  Similarity=0.060  Sum_probs=81.1

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC---CCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCc
Q 010551           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS---GKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        95 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~  169 (507)
                      +++.+++.+|+|=|..        +|.++.....+......   ..+|.. .. ++...  ++++|+|-|.        .
T Consensus        28 Ai~~~~g~~y~Fkg~~--------~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG~--------~   89 (207)
T 1pex_A           28 AITSLRGETMIFKDRF--------FWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRGR--------K   89 (207)
T ss_dssp             EEEEETTEEEEEETTE--------EEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEETT--------E
T ss_pred             EEEeCCCcEEEEECCE--------EEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEccC--------E
Confidence            3445789999996632        77777654443322211   123422 21 23333  5799999874        3


Q ss_pred             EEEEECCCCcE---EEeccCCCCCCC-CCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-----ccc-CC
Q 010551          170 VHFLDLETMTW---DAVEVTQTPPAP-RYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEI-KG  238 (507)
Q Consensus       170 ~~~~d~~t~~W---~~~~~~~~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~-~~  238 (507)
                      +|+|+-.+..-   ..+...| +|.. ..--++... +++++|+|-|       +..|+||..+++-..     +.. -.
T Consensus        90 ~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~  161 (207)
T 1pex_A           90 FWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP  161 (207)
T ss_dssp             EEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred             EEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCC
Confidence            66675322111   1222112 2321 122233333 3578999988       478999987654321     000 01


Q ss_pred             CCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEE
Q 010551          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  282 (507)
                      .+|  ..-.++...++.+|+|-|       +..|.||..+..-.
T Consensus       162 Gip--~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~  196 (207)
T 1pex_A          162 GIG--DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV  196 (207)
T ss_dssp             TSC--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred             CCC--CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence            122  223344556889999966       35788988776543

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=89.33  E-value=5.3  Score=31.74  Aligned_cols=68  Identities=12%  Similarity=0.113  Sum_probs=43.4

Q ss_pred             HhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH-------HHHHHHHHHHHhHHHHHHHHHHh
Q 010551          421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-------TIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       421 ~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-------~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                      ..-.+-++...-.+.--..+..-++.+..++..+.+.+.+|.+++       +++.+++++..+..+..+.++.+
T Consensus        52 tal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA  126 (158)
T 3tul_A           52 TALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKA  126 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444555557777777777888888888776       77788888888777666665544

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=89.29  E-value=5.4  Score=30.52  Aligned_cols=11  Identities=9%  Similarity=-0.016  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHh
Q 010551          392 DAIKEDKRVLE  402 (507)
Q Consensus       392 ~~l~~~~~~~~  402 (507)
                      ++|+...+++.
T Consensus         9 ~~lq~~~~ql~   19 (112)
T 1x79_B            9 KKLQLMLRQAN   19 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.19  E-value=4.2  Score=32.84  Aligned_cols=49  Identities=8%  Similarity=0.051  Sum_probs=19.1

Q ss_pred             hHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 010551          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       415 l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      |+.++..++..+.+++.+++.....++.++....-++-++..++++++.
T Consensus        73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k  121 (152)
T 3a7p_A           73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD  121 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333444444444444334333343333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=89.15  E-value=6.2  Score=30.20  Aligned_cols=20  Identities=20%  Similarity=0.124  Sum_probs=8.1

Q ss_pred             hhhhhHHHHHHHHHHHHhHH
Q 010551          446 RCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       446 ~~~~~e~~~~e~~~~~~~~~  465 (507)
                      .++.|..+++.-++.|+.++
T Consensus        46 qV~~L~~~~q~sE~~L~~Lq   65 (112)
T 1x79_B           46 QISALVLRAQASEILLEELQ   65 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=88.93  E-value=3.2  Score=28.99  Aligned_cols=20  Identities=10%  Similarity=0.034  Sum_probs=8.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHh
Q 010551          469 NEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       469 ~e~~~~~~~~~~~~~~~~~~  488 (507)
                      .++..+.+.+.....++.+.
T Consensus        42 ~Elk~~~e~Ld~KI~eL~el   61 (72)
T 3cve_A           42 SNLKTLLEILDGKIFELTEL   61 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHH
Confidence            34444444444444444333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=88.67  E-value=1.8  Score=30.91  Aligned_cols=31  Identities=16%  Similarity=0.403  Sum_probs=14.7

Q ss_pred             hhhHHHHHHhhccchhHHHhHHHHHhhHHHh
Q 010551          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~  443 (507)
                      .++.+++++++..+.++++.++..+.+++.-
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s   39 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEA   39 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555444444433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.61  E-value=8.4  Score=31.39  Aligned_cols=25  Identities=12%  Similarity=0.272  Sum_probs=10.1

Q ss_pred             HHHhhccchhHHHhHHHHHhhHHHh
Q 010551          419 IDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       419 l~~~~~~~~e~~~el~~~~~~~~~~  443 (507)
                      +..+..++.....++.....++..+
T Consensus        46 ~~~l~~~~~~~~~e~~~L~~~l~~E   70 (154)
T 2ocy_A           46 YNTLKRELSDRDDEVKRLREDIAKE   70 (154)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3333333334444444444444443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=88.48  E-value=4.9  Score=32.70  Aligned_cols=76  Identities=18%  Similarity=0.298  Sum_probs=45.8

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~le~e~~~~~~~~~~~~~~~~  486 (507)
                      +....+...++..+..++..+.+..+...+..-.++....+..+.+++.+++...    .|+-.-+++.++-+..+.++.
T Consensus        60 qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~  139 (147)
T 2b9c_A           60 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVA  139 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHH
Confidence            3333444444555555666666777777777778888888888888888877766    333333334444444444443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=88.39  E-value=16  Score=33.88  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=56.2

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCC
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD  115 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~  115 (507)
                      +.+++.|+.+     ..+.+||..+...........                .......+.+  ++..++.|+.+     
T Consensus        54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~l~s~~~d-----  107 (368)
T 3mmy_A           54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQM----------------HTGPVLDVCWSDDGSKVFTASCD-----  107 (368)
T ss_dssp             SEEEEEEETT-----SEEEEEEECTTSCEEEEEEEE----------------CSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             ceEEEEECCC-----CcEEEEEcCCCCceeEEEecc----------------ccCCEEEEEECcCCCEEEEEcCC-----
Confidence            3778887744     358899988743332111110                0111222223  45555666543     


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE----CCEEEEEcCCCCCCCccCcEEEEECCCCc
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~iy~~GG~~~~~~~~n~~~~~d~~t~~  179 (507)
                       ..+.+||..++.......   .   .....++.+    ++.+++.|+.++      .+.+||+.+.+
T Consensus       108 -g~v~iwd~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~  162 (368)
T 3mmy_A          108 -KTAKMWDLSSNQAIQIAQ---H---DAPVKTIHWIKAPNYSCVMTGSWDK------TLKFWDTRSSN  162 (368)
T ss_dssp             -SEEEEEETTTTEEEEEEE---C---SSCEEEEEEEECSSCEEEEEEETTS------EEEEECSSCSS
T ss_pred             -CcEEEEEcCCCCceeecc---c---cCceEEEEEEeCCCCCEEEEccCCC------cEEEEECCCCc
Confidence             358899999887655431   1   111222222    457777777653      58899987764

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.14  E-value=2.9  Score=34.12  Aligned_cols=15  Identities=7%  Similarity=0.071  Sum_probs=6.2

Q ss_pred             HHHhHHHHHhhHHHh
Q 010551          429 LSKELSSVQGQLVAE  443 (507)
Q Consensus       429 ~~~el~~~~~~~~~~  443 (507)
                      .++++..+..+++.+
T Consensus        77 aE~~~~~ie~ElEeL   91 (154)
T 2ocy_A           77 AEEEADKLNKEVEDL   91 (154)
T ss_dssp             HHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=88.12  E-value=16  Score=33.76  Aligned_cols=104  Identities=14%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCC
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSS  114 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~  114 (507)
                      +.+++.|+.+     ..+.+||+.++.-...-...                  ......+.+   ++.+++.|+.+.   
T Consensus        85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~~l~s~~~dg---  138 (366)
T 3k26_A           85 HPLLAVAGSR-----GIIRIINPITMQCIKHYVGH------------------GNAINELKFHPRDPNLLLSVSKDH---  138 (366)
T ss_dssp             CEEEEEEETT-----CEEEEECTTTCCEEEEEESC------------------CSCEEEEEECSSCTTEEEEEETTS---
T ss_pred             CCEEEEecCC-----CEEEEEEchhceEeeeecCC------------------CCcEEEEEECCCCCCEEEEEeCCC---
Confidence            4677777744     35889998876432221100                  111222222   456777776532   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~  178 (507)
                         .+.+||+.++.-.....  ..........++.+  ++..++.|+.+      +.+.+||+.+.
T Consensus       139 ---~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~  193 (366)
T 3k26_A          139 ---ALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINSK  193 (366)
T ss_dssp             ---CEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCSH
T ss_pred             ---eEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCCC
Confidence               38999998886544321  11112222333333  34566677654      35888998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=88.10  E-value=3.4  Score=43.44  Aligned_cols=61  Identities=8%  Similarity=0.079  Sum_probs=31.9

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCc--cccceEEE-ECCEEEEEcCCCCC----ccCCceEEEEccCCce
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSP--RYKHAAAV-FDQKLYIVGGSRNG----RFLSDVQVFDLRSLAW   65 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~--r~~~~~~~-~~~~iyi~GG~~~~----~~~~~~~~~d~~~~~W   65 (507)
                      |..+|++|+..++-..+..   .+..  ..-.+.+. -+++.++++....+    .....++++|+.++..
T Consensus        35 d~~i~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILS---NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             TSCEEEEESSSCCEEEEEC---HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCCEEEEEcCCCcEEEEEc---cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            4567888888888766652   1100  00112222 24554444432111    1135789999988766

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=88.01  E-value=12  Score=32.11  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=78.8

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEEccCC--ceeeeccccccCCCccccCCCcCCCCCccceeEEE-ECCEEEEEecc
Q 010551           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGH  109 (507)
Q Consensus        33 ~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~  109 (507)
                      ++.+++.+|+|=|       +.+|.++....  ..........           ....|.....+... .++++|+|-|.
T Consensus        12 i~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~-----------w~glP~~IDAa~~~~~~~~~yfFkG~   73 (195)
T 1itv_A           12 IAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADK-----------WPALPRKLDSVFEEPLSKKLFFFSGR   73 (195)
T ss_dssp             EEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHH-----------CTTSCSSCSEEEECTTTCCEEEEETT
T ss_pred             EEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhc-----------cCCCCCCccEEEEECCCCeEEEEeCC
Confidence            4457999999988       34777766442  1211111000           11122223322222 16789999773


Q ss_pred             CCCCCCcceEEEEECCCCcE-EEeecCCCCCCCCcCcEEEE--ECCEEEEEcCCCCCCCccCcEEEEECCCCcEEE----
Q 010551          110 YKKSSDSMIVRFIDLETNLC-GVMETSGKVPVTRGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA----  182 (507)
Q Consensus       110 ~~~~~~~~~~~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~----  182 (507)
                              ..|+|+..+..- +.+..-| +|......-++.  .++++|+|-|.        ..++||..+.+-..    
T Consensus        74 --------~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr  136 (195)
T 1itv_A           74 --------QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSAS  136 (195)
T ss_dssp             --------EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCE
T ss_pred             --------EEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCcc
Confidence                    388887553221 0111112 232111222233  25699999773        47899987654211    


Q ss_pred             -ec-cCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          183 -VE-VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       183 -~~-~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                       +. .=..+|  ..-.++... ++.+|+|-|       +..|+||..+..-.
T Consensus       137 ~i~~~w~Gvp--~~idaa~~~-~g~~Yffkg-------~~y~~~~~~~~~v~  178 (195)
T 1itv_A          137 EVDRMFPGVP--LDTHDVFQF-REKAYFCQD-------RFYWRVSSRSELNQ  178 (195)
T ss_dssp             EHHHHSTTSC--SSCSEEEEE-TTEEEEEET-------TEEEEEECCTTCCE
T ss_pred             ChhhcCCCCC--CCCCEEEEe-CCeEEEEeC-------CEEEEEECCccEEe
Confidence             10 000122  222344444 477999988       46899998776544

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=87.74  E-value=17  Score=35.83  Aligned_cols=157  Identities=9%  Similarity=-0.020  Sum_probs=78.4

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEE-ECCEEEEEeccC
Q 010551           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHY  110 (507)
Q Consensus        32 ~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~  110 (507)
                      +++.+++.+|+|-|       .-+|.++.....+.......           ....++.....+... .++++|+|=|. 
T Consensus       267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~-----------~Wp~LP~~iDAa~~~~~~g~~~fFKg~-  327 (450)
T 1su3_A          267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISV-----------FWPQLPNGLEAAYEFADRDEVRFFKGN-  327 (450)
T ss_dssp             EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGG-----------TCTTSCSSCCEEEEEGGGTEEEEEETT-
T ss_pred             eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhH-----------hccCCCCCeeEEEEEcCCCeEEEEeCC-
Confidence            44557999999988       23555554433322211110           011122222222222 26899999664 


Q ss_pred             CCCCCcceEEEEECCC---CcEEEee-cCCCCCCCCcCc-EEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEE--
Q 010551          111 KKSSDSMIVRFIDLET---NLCGVME-TSGKVPVTRGGH-SVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWD--  181 (507)
Q Consensus       111 ~~~~~~~~~~~yd~~t---~~W~~~~-~~g~~p~~r~~~-~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~--  181 (507)
                             .+|+|+..+   +-=..+. ..| .|...... ++...  ++++|+|-|.        ..|+||..+.+-.  
T Consensus       328 -------~~W~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG~--------~yw~yd~~~~~~~~g  391 (450)
T 1su3_A          328 -------KYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPG  391 (450)
T ss_dssp             -------EEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSS
T ss_pred             -------EEEEecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeCC--------EEEEEeCCCccccCC
Confidence                   278876432   1011111 112 22211122 33333  4799999873        5889987654321  


Q ss_pred             ---Eecc-CCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          182 ---AVEV-TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       182 ---~~~~-~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                         .+.. -...| ... .++. ..++++|+|-|       +..|+||..+..-..
T Consensus       392 YPk~I~~~fpgip-~~i-DAA~-~~~g~~YFFkg-------~~ywr~d~~~~~v~~  437 (450)
T 1su3_A          392 YPKMIAHDFPGIG-HKV-DAVF-MKDGFFYFFHG-------TRQYKFDPKTKRILT  437 (450)
T ss_dssp             CSEEHHHHSTTSC-SCC-SEEE-EETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             CCcchhhcCCCCC-CCc-cEEE-EcCCeEEEEeC-------CEEEEEECCcceEec
Confidence               1110 00112 122 2333 34678999988       478999988776554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=87.66  E-value=18  Score=33.66  Aligned_cols=191  Identities=14%  Similarity=0.104  Sum_probs=95.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      ++.+++.||.+     ..+.++|+.++.-...-.....     ...  ...|  .  ..++..++.+.+|-.       .
T Consensus        47 d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~~~~v-----~~~--~~~~--~--~~s~s~D~~i~~w~~-------~  103 (343)
T 3lrv_A           47 DKWVCMCRCED-----GALHFTQLKDSKTITTITTPNP-----RTG--GEHP--A--IISRGPCNRLLLLYP-------G  103 (343)
T ss_dssp             EEEEEEEEEET-----TEEEEEEESSSSCEEEEEEECC-----CTT--CCCC--S--EEEECSTTEEEEEET-------T
T ss_pred             CCCEEEEECCC-----CcEEEEECCCCcEEEEEecCCc-----eee--eeCC--c--eEEecCCCeEEEEEc-------c
Confidence            56677777744     3588888877653221111100     000  0011  1  222223556666643       2


Q ss_pred             ceEEEEECCCCc-EEEeecCCCCCCCCcCcEEEEE----CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          117 MIVRFIDLETNL-CGVMETSGKVPVTRGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       117 ~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~----~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                      ..+..||..++. -.....    +.. ....++.+    ++.+++.|+.++      .+.+||+.+.+-......   ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~----~~~-~~v~~~~~~~~~~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~---~~  169 (343)
T 3lrv_A          104 NQITILDSKTNKVLREIEV----DSA-NEIIYMYGHNEVNTEYFIWADNRG------TIGFQSYEDDSQYIVHSA---KS  169 (343)
T ss_dssp             TEEEEEETTTCCEEEEEEC----CCS-SCEEEEECCC---CCEEEEEETTC------CEEEEESSSSCEEEEECC---CS
T ss_pred             CceEEeecCCcceeEEeec----CCC-CCEEEEEcCCCCCCCEEEEEeCCC------cEEEEECCCCcEEEEEec---CC
Confidence            247778887776 333321    111 11122222    456677777653      589999988776443311   11


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE--ecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCC
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNG  267 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~--~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~  267 (507)
                      .....+++...++.+++.|+.+     ..+.+||+.++.-.  .+.  +  . ....-..+.+  ++..++.|+ ++   
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~~~~~~~~--~--~-h~~~v~~l~fs~~g~~l~s~~-~~---  235 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPDQASSRFP--V--D-EEAKIKEVKFADNGYWMVVEC-DQ---  235 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTTSCCEECC--C--C-TTSCEEEEEECTTSSEEEEEE-SS---
T ss_pred             CCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCCCCccEEe--c--c-CCCCEEEEEEeCCCCEEEEEe-CC---
Confidence            2123344445566677777754     36889999876532  111  1  0 1111122223  445666665 22   


Q ss_pred             cceEEEEECCCCc
Q 010551          268 CQETIVLNMTKLA  280 (507)
Q Consensus       268 ~~~~~~~d~~~~~  280 (507)
                        .+.++|+.+..
T Consensus       236 --~v~iwd~~~~~  246 (343)
T 3lrv_A          236 --TVVCFDLRKDV  246 (343)
T ss_dssp             --BEEEEETTSST
T ss_pred             --eEEEEEcCCCC
Confidence              57888987653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=87.58  E-value=17  Score=33.37  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=33.6

Q ss_pred             CCE-EEEEeccCCCCCCcceEEEEEC-CCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTK-LLILGGHYKKSSDSMIVRFIDL-ETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~-lyv~GG~~~~~~~~~~~~~yd~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++. +++.|+.+      ..+.+||+ .++....+.   ..+....-.+++...+.+++.|+.+      +.+.+||+.+
T Consensus        67 ~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~  131 (342)
T 1yfq_A           67 NTDLQIYVGTVQ------GEILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRN  131 (342)
T ss_dssp             SSSEEEEEEETT------SCEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred             CCCcEEEEEcCC------CeEEEEEeccCCceEecc---ccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence            566 66666643      24899999 888765443   1001111112222225555566654      3578888754

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=87.34  E-value=2.2  Score=31.35  Aligned_cols=15  Identities=7%  Similarity=0.271  Sum_probs=6.1

Q ss_pred             hHHHHHHhhccchhH
Q 010551          415 FREKIDEVNSTHSEL  429 (507)
Q Consensus       415 l~~~l~~~~~~~~e~  429 (507)
                      |...|+..++-+...
T Consensus         7 L~~~L~~aEeaL~~k   21 (94)
T 3jsv_C            7 LRQQLQQAEEALVAK   21 (94)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            444444444443333

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=87.29  E-value=1  Score=33.75  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=16.7

Q ss_pred             hhhhhHHHHHHhhccchhHHHhHHHHHhhHHH
Q 010551          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVA  442 (507)
Q Consensus       411 ~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~  442 (507)
                      +...++++++.++.+...+++++...+.+++.
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555554444433

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=87.24  E-value=8.7  Score=37.66  Aligned_cols=53  Identities=9%  Similarity=0.066  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHHHhhHHHh
Q 010551          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~  443 (507)
                      ++.|+....+++.......+-...|+..+...+.++.+.+..+++...++++.
T Consensus       102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~  154 (464)
T 1m1j_B          102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELH  154 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence            44444444444332222222223333334444444433333333333333333

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=87.20  E-value=9.5  Score=35.19  Aligned_cols=112  Identities=13%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE----CCEEEEEcCCCCCCCccCcEEEEEC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~iy~~GG~~~~~~~~n~~~~~d~  175 (507)
                      ++.+++.|+.+      ..+.+||+.++....+..   +..-.....++.+    ++.+++.|+.+.      .+.++|+
T Consensus        24 ~g~~lasgs~D------~~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSD------RSVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETT------TEEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECC
T ss_pred             CCCEEEEEeCC------CeEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEEC
Confidence            45566666643      347788887765433221   1101111222333    246677777653      4888999


Q ss_pred             CCCcEEEeccCCCCCCCCCCceEEEEcC--CEEEEEcCCCCCCCCCcEEEEECCCC-cEEe
Q 010551          176 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQ  233 (507)
Q Consensus       176 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~~-~W~~  233 (507)
                      .+..|..+.....  ....-.+++...+  +.+++.|+.++     .+.++|+... .|..
T Consensus        89 ~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           89 ENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEV  142 (316)
T ss_dssp             SSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEE
T ss_pred             CCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcce
Confidence            8877654432111  0111122222222  44666676543     4777777664 4643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=87.07  E-value=21  Score=33.99  Aligned_cols=69  Identities=9%  Similarity=0.077  Sum_probs=38.8

Q ss_pred             CCeEEEEeccCC----CCCcceEEEEECCCCcE-EEeccCCCCCCCCCCCCceEEEEEcCce-EEEEEccCCCCcCceEE
Q 010551          253 DENWYIVGGGDN----NNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNNEVF  326 (507)
Q Consensus       253 ~~~l~v~GG~~~----~~~~~~~~~~d~~~~~W-~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~  326 (507)
                      ++++||......    ....++++++|+.+.+- ..++ ++.        ......+..++. .+|+..+.    .+++.
T Consensus       278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~--------~p~~i~~s~Dg~~~l~v~~~~----~~~V~  344 (373)
T 2mad_H          278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGH--------DVDAISVAQDGGPDLYALSAG----TEVLH  344 (373)
T ss_pred             CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCC--------CcCeEEECCCCCeEEEEEcCC----CCeEE
Confidence            468888754211    12346899999988765 3342 221        112333344444 56664421    47899


Q ss_pred             EEECCCCC
Q 010551          327 VMRLKPRD  334 (507)
Q Consensus       327 ~~~~~~~~  334 (507)
                      ++|..+..
T Consensus       345 ViD~~t~~  352 (373)
T 2mad_H          345 IYDAGAGD  352 (373)
T ss_pred             EEECCCCC
Confidence            99987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=86.99  E-value=19  Score=33.39  Aligned_cols=105  Identities=14%  Similarity=0.154  Sum_probs=56.7

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++.+++.|+.+.      .+.+||+.++.-.....   ...... ..++.+  ++.+++.|+.++      .+.+||+.+
T Consensus       138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~---~~~~~~-i~~~~~~pdg~~lasg~~dg------~i~iwd~~~  201 (343)
T 3lrv_A          138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHS---AKSDVE-YSSGVLHKDSLLLALYSPDG------ILDVYNLSS  201 (343)
T ss_dssp             -CCEEEEEETTC------CEEEEESSSSCEEEEEC---CCSSCC-CCEEEECTTSCEEEEECTTS------CEEEEESSC
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCcEEEEEe---cCCCCc-eEEEEECCCCCEEEEEcCCC------EEEEEECCC
Confidence            445666666432      38899999887644331   111111 223333  467777787653      599999987


Q ss_pred             CcEE--EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          178 MTWD--AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       178 ~~W~--~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ..-.  .+..    .....-.++....++..++.|+ +     +.+.+||+.+..
T Consensus       202 ~~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~-----~~v~iwd~~~~~  246 (343)
T 3lrv_A          202 PDQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-D-----QTVVCFDLRKDV  246 (343)
T ss_dssp             TTSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-S-----SBEEEEETTSST
T ss_pred             CCCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEEcCCCC
Confidence            7643  2211    0011111222234554666665 2     168899987754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=86.94  E-value=20  Score=33.42  Aligned_cols=213  Identities=11%  Similarity=0.116  Sum_probs=104.8

Q ss_pred             CCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEcc-CCceeeeccccccCCCccccCCCcCCCC
Q 010551           12 YDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVLP   89 (507)
Q Consensus        12 ~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~p~   89 (507)
                      -..|+.+..    |....-.++... .+.+|++|- .     ..++. ..+ -.+|+.+.....              .+
T Consensus        24 g~~W~~~~~----~~~~~~~~v~~~~~~~~~~~G~-~-----g~i~~-s~DgG~tW~~~~~~~~--------------~~   78 (327)
T 2xbg_A           24 YNPWEAIQL----PTTATILDMSFIDRHHGWLVGV-N-----ATLME-TRDGGQTWEPRTLVLD--------------HS   78 (327)
T ss_dssp             SCCEEEEEC----SCSSCEEEEEESSSSCEEEEET-T-----TEEEE-ESSTTSSCEECCCCCS--------------CC
T ss_pred             CCCceEeec----CCCCcEEEEEECCCCcEEEEcC-C-----CeEEE-eCCCCCCCeECCCCCC--------------CC
Confidence            468998873    222222233332 567888663 1     12333 333 348988753210              11


Q ss_pred             CccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE-ECCEEEEEcCCCCCCCccC
Q 010551           90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL-VGSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus        90 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~iy~~GG~~~~~~~~n  168 (507)
                      .....++...++.+|+.|..       ..+++-+-.-.+|+.+......|..  .+.++. -++.+|+.|...       
T Consensus        79 ~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~g-------  142 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNVG-------  142 (327)
T ss_dssp             CCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETTC-------
T ss_pred             CccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCCc-------
Confidence            12233444456788887531       1244422224589998632112221  233333 356888776421       


Q ss_pred             cEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC-CCcEEecccCCCCCCCCCcc
Q 010551          169 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       169 ~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~  247 (507)
                      .+++-+=.-.+|+.+..    +.+...++++...++.++++|-.      ..+++-+-. -..|+.+..    +.+...+
T Consensus       143 ~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~~----~~~~~~~  208 (327)
T 2xbg_A          143 AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHNR----TTSRRLH  208 (327)
T ss_dssp             CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEEC----CSSSCEE
T ss_pred             cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECCC----CCCCccc
Confidence            24443323557999864    22233444544455656666532      135554322 568998632    2334444


Q ss_pred             EEEEE-CCeEEEEeccCCCCCcceEEEEECC-CCcEEEec
Q 010551          248 AGITI-DENWYIVGGGDNNNGCQETIVLNMT-KLAWSILT  285 (507)
Q Consensus       248 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~-~~~W~~v~  285 (507)
                      .++.. ++.+|+++.. +     .+++.+.. ..+|+.+.
T Consensus       209 ~~~~~~~g~~~~~~~~-G-----~~~~s~~D~G~tW~~~~  242 (327)
T 2xbg_A          209 NMGFTPDGRLWMIVNG-G-----KIAFSDPDNSENWGELL  242 (327)
T ss_dssp             EEEECTTSCEEEEETT-T-----EEEEEETTEEEEECCCB
T ss_pred             eeEECCCCCEEEEeCC-c-----eEEEecCCCCCeeEecc
Confidence            44443 4577776531 1     24444333 56788764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=86.69  E-value=17  Score=38.15  Aligned_cols=154  Identities=6%  Similarity=-0.072  Sum_probs=78.6

Q ss_pred             ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE--ECCEEEEEcCCCCCCCccCcEEEEECC
Q 010551           99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus        99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      .+++||+.-..      ...|+++++....-..+... .+..++   .+++  .++.||+.--.     ..+.|+++++.
T Consensus       463 ~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~td~~-----~~~~I~~~~~d  527 (699)
T 1n7d_A          463 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLN  527 (699)
T ss_dssp             SSSBCEECCTT------TSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEECCCS-----SSCCEEBCCSS
T ss_pred             eCCcEEEEecc------CCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEcccC-----CCCeEEEEeCC
Confidence            46788885321      34589999887654444321 111111   1222  25677764311     12468888876


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCe
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  255 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  255 (507)
                      ...-..+... .+.   .-.++++- .++.||+.-..     .+.|+++++....-..+..  ........+++++.++.
T Consensus       528 G~~~~~l~~~-~l~---~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~--~~~~~~~P~glavd~~~  596 (699)
T 1n7d_A          528 GVDIYSLVTE-NIQ---WPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILE--DEKRLAHPFSLAVFEDK  596 (699)
T ss_dssp             SCCCCEESCS-SCS---SCCCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECC--CSSSCSSCCCCEEETTE
T ss_pred             CCCeeEEEeC-CCC---CccEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEe--cCCcCCCceEeEEECCE
Confidence            5433333211 111   11223332 35668886432     3578999986543333211  11111234466777888


Q ss_pred             EEEEeccCCCCCcceEEEEECCCCcEEE
Q 010551          256 WYIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       256 l~v~GG~~~~~~~~~~~~~d~~~~~W~~  283 (507)
                      +|+.-.     ....|.++|+.+..-..
T Consensus       597 lywtd~-----~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          597 VFWTDI-----INEAIFSANRLTGSDVN  619 (699)
T ss_dssp             EEEECS-----TTTCEEEEETTTEEEEE
T ss_pred             EEEEeC-----CCCeEEEEEccCCCceE
Confidence            988842     23468888877665433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=86.43  E-value=19  Score=32.87  Aligned_cols=137  Identities=9%  Similarity=0.079  Sum_probs=67.3

Q ss_pred             ECCEEEEEeccCCCCCCcceEEEEECC-CCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECC
Q 010551           99 WGTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus        99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      .++.||+...       ...++.||+. ...|.....     .. ...+.+.. ++.||+ |..      .+.++.||+.
T Consensus       106 ~~~~l~v~t~-------~~~l~~~d~~g~~~~~~~~~-----~~-~~~~~~~~~~g~l~v-gt~------~~~l~~~d~~  165 (330)
T 3hxj_A          106 FEDILYVTSM-------DGHLYAINTDGTEKWRFKTK-----KA-IYATPIVSEDGTIYV-GSN------DNYLYAINPD  165 (330)
T ss_dssp             ETTEEEEECT-------TSEEEEECTTSCEEEEEECS-----SC-CCSCCEECTTSCEEE-ECT------TSEEEEECTT
T ss_pred             ECCEEEEEec-------CCEEEEEcCCCCEEEEEcCC-----Cc-eeeeeEEcCCCEEEE-EcC------CCEEEEECCC
Confidence            3888887532       2348999988 234654421     11 11222333 456665 332      2458999987


Q ss_pred             CCc--EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC-CcEEecccCCCCCCCCCccEEEEE-
Q 010551          177 TMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITI-  252 (507)
Q Consensus       177 t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~-  252 (507)
                       ++  |.....      .....+++...++.+|+..        ..++.||... ..|....     +. ....+++.. 
T Consensus       166 -g~~~~~~~~~------~~~~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~-----~~-~~~~~~~~~~  224 (330)
T 3hxj_A          166 -GTEKWRFKTN------DAITSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYA-----GY-WTVTRPAISE  224 (330)
T ss_dssp             -SCEEEEEECS------SCCCSCCEECTTCCEEEES--------SSEEEECTTSCEEEEECC-----SS-CCCSCCEECT
T ss_pred             -CCEeEEEecC------CCceeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEcc-----CC-cceeceEECC
Confidence             43  554321      1122233333456566643        4688998432 2465531     11 112233333 


Q ss_pred             CCeEEEEeccCCCCCcceEEEEECCCCc-EE
Q 010551          253 DENWYIVGGGDNNNGCQETIVLNMTKLA-WS  282 (507)
Q Consensus       253 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~-W~  282 (507)
                      ++.+|+...      -..++.||..... |.
T Consensus       225 ~g~l~v~t~------~~gl~~~~~~g~~~~~  249 (330)
T 3hxj_A          225 DGTIYVTSL------DGHLYAINPDGTEKWR  249 (330)
T ss_dssp             TSCEEEEET------TTEEEEECTTSCEEEE
T ss_pred             CCeEEEEcC------CCeEEEECCCCCEeEE
Confidence            346666421      1247778765443 44

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=86.41  E-value=24  Score=33.91  Aligned_cols=109  Identities=13%  Similarity=0.048  Sum_probs=57.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++.+++.|+.+      ..+.+||+.+++-...-   ..+.......++.+  ++.+++.|+.++      .+.+||+.+
T Consensus       181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNL------SRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETT------SEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence            36677776653      35899999887644332   11111122333444  457777777653      589999988


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEE-----cCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALH-----ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~-----~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      ......-..   + .......+.+     .++.+++.|+.+     ..+.+||+.++.-.
T Consensus       246 ~~~~~~~~~---~-~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~  296 (437)
T 3gre_A          246 NVLIRSWSF---G-DHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQ  296 (437)
T ss_dssp             TEEEEEEBC---T-TCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEE
T ss_pred             ccEEEEEec---C-CCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEE
Confidence            665332110   1 0101111111     234456666543     25888998877643

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=86.37  E-value=4.7  Score=28.59  Aligned_cols=12  Identities=17%  Similarity=0.362  Sum_probs=4.8

Q ss_pred             HHhHHHHHHHHH
Q 010551          475 RQQKSAFEQEME  486 (507)
Q Consensus       475 ~~~~~~~~~~~~  486 (507)
                      +.+++.++++++
T Consensus        58 ~~e~~~l~~~~e   69 (81)
T 1wt6_A           58 EAHVRQLQERME   69 (81)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333344444443

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=86.26  E-value=5.6  Score=36.01  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551          455 AELQKMLESSQTIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       455 ~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      ...++.|.+..++..+..++..+++.++++.++
T Consensus        69 ~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ier  101 (302)
T 3ibp_A           69 EYLQQLLEREREAIVERDEVGARKNAVDEEIER  101 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555566666667777777764

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=86.13  E-value=4.3  Score=29.38  Aligned_cols=33  Identities=30%  Similarity=0.205  Sum_probs=13.9

Q ss_pred             HhhHHHhhhhhhhhHHHHHHHHHHHHhHHHHHH
Q 010551          437 QGQLVAERSRCFKLEAQIAELQKMLESSQTIEN  469 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~le~  469 (507)
                      ..+++.++.++..|+-++++..-++.++++.++
T Consensus        26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr   58 (83)
T 2xdj_A           26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444443333

>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1

Probab=85.81  E-value=4.4  Score=28.08  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             HHHHhhccchhHHHhHHHHHhhHHHhhhhhhhhHHHHHHHHHHHHhH
Q 010551          418 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      .++.+..+.+++.+.+...+++++..++.+.......+.++.+|...
T Consensus         5 ~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E   51 (71)
T 1uix_A            5 DVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTE   51 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445544444444444444433333223333444444333

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=85.67  E-value=22  Score=32.81  Aligned_cols=144  Identities=15%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CC-EEEEEcCCC-----------------CC---CCccCcEEE
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GS-RLIIFGGED-----------------RS---RKLLNDVHF  172 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~iy~~GG~~-----------------~~---~~~~n~~~~  172 (507)
                      ...++++|+.++....+...   +.    .....+  ++ .|++.....                 +.   ......+++
T Consensus        84 ~~~l~~~~~~~g~~~~l~~~---~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILEA---KN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWI  156 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE---SE----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEE
T ss_pred             cceEEEEECCCCceEEEEcC---CC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEE
Confidence            45699999999887766521   21    222333  44 444443110                 00   011356999


Q ss_pred             EECCCCcE-EEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCC---C-CCcEEEEECCCCcEEecccCCCCCCCCCcc
Q 010551          173 LDLETMTW-DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---F-FNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       173 ~d~~t~~W-~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~-~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  247 (507)
                      +|+.++.. ..+..      + .....+...++ +++.+..+...   . ...+|.+|  ++.+..+...       ...
T Consensus       157 ~d~~~~~~~~~l~~------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~  219 (347)
T 2gop_A          157 FDTESEEVIEEFEK------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-------VSF  219 (347)
T ss_dssp             EETTTTEEEEEEEE------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-------ESE
T ss_pred             EECCCCeEEeeecC------C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-------cce
Confidence            99998887 55542      1 23344444566 55555433221   2 45789998  6777665321       111


Q ss_pred             EEEEECCeEEEEeccCC---CCCcceEEEEECCCCcEEEec
Q 010551          248 AGITIDENWYIVGGGDN---NNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       248 ~~~~~~~~l~v~GG~~~---~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      ....-+++.+++.+...   ......+|++|  +..+..+.
T Consensus       220 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~  258 (347)
T 2gop_A          220 YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL  258 (347)
T ss_dssp             EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred             eeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence            12233554444443222   11245789998  56666653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=85.67  E-value=20  Score=32.35  Aligned_cols=226  Identities=14%  Similarity=0.087  Sum_probs=101.9

Q ss_pred             CceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEE
Q 010551           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        53 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~  130 (507)
                      +.|.++|+.++.-...-....                ......++.+  +++.++.|+.+      ..+.++|..+++-.
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~----------------~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~  102 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRL  102 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEEecC----------------CCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeE
Confidence            469999999887655432211                0111223333  55666777653      24888999988644


Q ss_pred             EeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEc
Q 010551          131 VMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G  210 (507)
                      ....   ..  .....+....+.+++.|+.+.      .+..++..+.........+.   ...........++.+++.|
T Consensus       103 ~~~~---~h--~~~~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~  168 (318)
T 4ggc_A          103 RNMT---SH--SARVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASG  168 (318)
T ss_dssp             EEEE---CC--SSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEE
T ss_pred             EEec---Cc--cceEEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcCc---cCceEEEEEcCCCCEEEEE
Confidence            3321   11  112233344455556665432      35555555443332221111   1111222223344466666


Q ss_pred             CCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCC
Q 010551          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~  288 (507)
                      +.+     ..+.+||+.++.-..............-.+++..  +..++.+++....   ..+.++|.....-.......
T Consensus       169 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~i~lwd~~~~~~~~~~~~~  240 (318)
T 4ggc_A          169 GND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDAH  240 (318)
T ss_dssp             ETT-----SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT---CEEEEEETTTCCEEEEEECS
T ss_pred             ecC-----cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC---CEEEEEecccccccccccce
Confidence            654     2577888876532111000000000011111221  3344443322221   24667787766544332211


Q ss_pred             CCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          289 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                              .........+....+++.+|..   ...+.++|+.+.
T Consensus       241 --------~~v~~~~~~~~~~~~~~~sg~~---d~~i~iwd~~~~  274 (318)
T 4ggc_A          241 --------SQVCSILWSPHYKELISGHGFA---QNQLVIWKYPTM  274 (318)
T ss_dssp             --------SCEEEEEEETTTTEEEEEECTT---TCCEEEEETTTC
T ss_pred             --------eeeeeeeecccccceEEEEEcC---CCEEEEEECCCC
Confidence                    1123333445555666655543   345778887544

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=85.47  E-value=6.4  Score=27.47  Aligned_cols=24  Identities=29%  Similarity=0.471  Sum_probs=10.2

Q ss_pred             HHHHHhhccchhHHHhHHHHHhhH
Q 010551          417 EKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       417 ~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      +++++++..+.+++++++..+.++
T Consensus         7 ~kLq~~E~~N~~Le~~v~~le~~L   30 (72)
T 3cve_A            7 MKLQEVEIRNKDLEGQLSEMEQRL   30 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            334444444444444444443333

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=85.15  E-value=33  Score=34.35  Aligned_cols=143  Identities=8%  Similarity=0.021  Sum_probs=66.2

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++..++.|+.+      ..+.+||.....-..+..      ......++.+  +++.++.|+.+      ..+.+||...
T Consensus       355 ~g~~l~~~~~d------g~v~~~~~~~~~~~~~~~------~~~~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~  416 (577)
T 2ymu_A          355 DGQTIASASDD------KTVKLWNRNGQLLQTLTG------HSSSVRGVAFSPDGQTIASASDD------KTVKLWNRNG  416 (577)
T ss_dssp             TSSEEEEEETT------SEEEEEETTCCEEEEEEC------CSSCEEEEEECTTSSCEEEEETT------SEEEEECTTC
T ss_pred             CCCEEEEEeCC------CEEEEEcCCCCEEEEecC------CCCCeEEEEECCCCCEEEEEeCC------CEEEEEeCCC
Confidence            45566666543      237778865444333321      1111222333  44566666654      2477788644


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  256 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  256 (507)
                      ..-..+..  .   ...-.+++...++.+++.|+.+     ..+.+||........+.  +   ....-.+++.. ++++
T Consensus       417 ~~~~~~~~--~---~~~v~~~~~s~d~~~l~~~~~d-----~~v~~w~~~~~~~~~~~--~---~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          417 QLLQTLTG--H---SSSVWGVAFSPDDQTIASASDD-----KTVKLWNRNGQLLQTLT--G---HSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             CEEEEEEC--C---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSCEEEEEE--C---CSSCEEEEEECTTSCE
T ss_pred             CEEEEecC--C---CCCeEEEEECCCCCEEEEEcCC-----CEEEEEECCCCEEEEEc--C---CCCCEEEEEEcCCCCE
Confidence            33333321  0   1111122333455466666643     25778887554433331  1   11111122222 4567


Q ss_pred             EEEeccCCCCCcceEEEEECCCCc
Q 010551          257 YIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ++.|+.++     .+.++|.....
T Consensus       482 las~~~d~-----~i~iw~~~~~~  500 (577)
T 2ymu_A          482 IASASDDK-----TVKLWNRNGQL  500 (577)
T ss_dssp             EEEEETTS-----EEEEEETTSCE
T ss_pred             EEEEeCCC-----EEEEEcCCCCE
Confidence            77766432     46777865443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=85.13  E-value=43  Score=35.66  Aligned_cols=148  Identities=5%  Similarity=-0.092  Sum_probs=82.5

Q ss_pred             ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE--ECCEEEEEcCCCCCCCccCcEEEEECC
Q 010551           99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus        99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~n~~~~~d~~  176 (507)
                      ++++||+.-..      ...|+++++....-+.+... .+..|   ..+++  .++.||+.--..     .+.|+++++.
T Consensus       481 ~~~~LY~tD~~------~~~I~v~~ldG~~~~~l~~~-~l~~P---~gIaVDp~~g~LYwtD~g~-----~~~I~~~~~d  545 (791)
T 3m0c_C          481 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWGT-----PAKIKKGGLN  545 (791)
T ss_dssp             TTTEEEEEETT------TTEEEEEETTSSSEEEEEEC-TTCCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETT
T ss_pred             cCCcEEEEecC------CCeEEEEeCCCCeEEEEEeC-CCCCc---ceEEEecCCCCEEEecCCC-----CCeEEEEecC
Confidence            36799987432      44699999987765555421 22222   12333  257888864111     2469999987


Q ss_pred             CCcEEEeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecc-cCCCCCCCCCccEEEEEC
Q 010551          177 TMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE-IKGDLVTGRAGHAGITID  253 (507)
Q Consensus       177 t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~-~~~~~p~~r~~~~~~~~~  253 (507)
                      ...-..+... .+    .....+.+  .++.||+.-..     .+.|+++++....-..+. ..+.++   ..+++++.+
T Consensus       546 G~~~~~lv~~-~l----~~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~---~P~glav~~  612 (791)
T 3m0c_C          546 GVDIYSLVTE-NI----QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFE  612 (791)
T ss_dssp             SCCEEEEECS-SC----SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTS---SEEEEEEET
T ss_pred             CCceEEEEeC-CC----CCceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccC---CCCEEEEeC
Confidence            6554444321 11    12223333  36789987432     357999998765433332 112233   234777788


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCCC
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      ++||+.-.     ....|+.+|..++
T Consensus       613 ~~lYwtD~-----~~~~I~~~dk~tG  633 (791)
T 3m0c_C          613 DKVFWTDI-----INEAIFSANRLTG  633 (791)
T ss_dssp             TEEEEEET-----TTTEEEEEETTTC
T ss_pred             CEEEEEEC-----CCCEEEEEeCCCC
Confidence            89998843     2345677775443

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=84.51  E-value=16  Score=30.06  Aligned_cols=28  Identities=11%  Similarity=0.280  Sum_probs=11.6

Q ss_pred             hhhHHHHHHhhccchhHHHhHHHHHhhH
Q 010551          413 SRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       413 ~~l~~~l~~~~~~~~e~~~el~~~~~~~  440 (507)
                      ..|...+++++..+.++...+...+.+.
T Consensus        53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~   80 (155)
T 2oto_A           53 EELEKAKQALEDQRKDLETKLKELQQDY   80 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=84.48  E-value=0.29  Score=50.22  Aligned_cols=8  Identities=0%  Similarity=-0.089  Sum_probs=3.5

Q ss_pred             eEEEEEcc
Q 010551          309 HHLVAFGG  316 (507)
Q Consensus       309 ~~l~v~GG  316 (507)
                      .+.|.+++
T Consensus       254 ~F~I~~~~  261 (575)
T 2i1j_A          254 KFIIKPID  261 (575)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEEcc
Confidence            34444443

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=84.22  E-value=19  Score=30.85  Aligned_cols=154  Identities=12%  Similarity=0.120  Sum_probs=77.2

Q ss_pred             EEEECCEEEEEeccCCCCCCcceEEEEECCC---CcEEEeecC-CCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEE
Q 010551           96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLET---NLCGVMETS-GKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  171 (507)
Q Consensus        96 ~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~-g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~  171 (507)
                      ++.+.+.+|+|-|..        +|+++...   +-=..+... ..+|.. ...+....++++|+|-|.        ..|
T Consensus        11 ~~~~~g~~~fFkg~~--------~w~~~~~~~~~gyP~~I~~~w~glP~~-iDAa~~~~~g~~yfFkg~--------~yw   73 (196)
T 3c7x_A           11 VAMLRGEMFVFKERW--------FWRVRNNQVMDGYPMPIGQFWRGLPAS-INTAYERKDGKFVFFKGD--------KHW   73 (196)
T ss_dssp             EEEETTEEEEEETTE--------EEEEETTEECTTCSEEHHHHSTTCCSS-CCEEEECTTSCEEEEETT--------EEE
T ss_pred             EEEcCCEEEEEECCE--------EEEEECCccCCCCceEhhHhccCCCCC-ccEEEEeCCCcEEEecCC--------EEE
Confidence            446789999997642        77775321   101111111 023432 221211235789998773        468


Q ss_pred             EEECCCCcE---EEeccCC-CCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe--cccCCCC-CCCC
Q 010551          172 FLDLETMTW---DAVEVTQ-TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIKGDL-VTGR  244 (507)
Q Consensus       172 ~~d~~t~~W---~~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~~~~-p~~r  244 (507)
                      +|+-.+...   ..+...+ .+|......+.....++++|+|-|       +..|+||..+++-..  +...... -.|.
T Consensus        74 ~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gip~  146 (196)
T 3c7x_A           74 VFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGIPE  146 (196)
T ss_dssp             EEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTCCS
T ss_pred             EEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCcCC
Confidence            887532110   1222211 133222332222234678999987       478999987754322  1000111 1122


Q ss_pred             CccEEEEE-CC-eEEEEeccCCCCCcceEEEEECCCCc
Q 010551          245 AGHAGITI-DE-NWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       245 ~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .-.++... ++ ++|+|-|       +..|.||..+..
T Consensus       147 ~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~  177 (196)
T 3c7x_A          147 SPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK  177 (196)
T ss_dssp             SCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred             CcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence            23344444 33 8999866       357899987754

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=84.12  E-value=21  Score=31.21  Aligned_cols=155  Identities=13%  Similarity=0.063  Sum_probs=76.9

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEEccCCc-eeeeccccccCCCccccCCCcCCCCCccceeEEE-ECCEEEEEecc
Q 010551           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA-WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGH  109 (507)
Q Consensus        32 ~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~  109 (507)
                      +++.+.+.+|+|-|       +.+|.++..... ........           .....+.....+... .++++|+|-|.
T Consensus        35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~-----------~wp~lp~~IDAA~~~~~~~k~yfFkG~   96 (218)
T 1gen_A           35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVAT-----------FWPELPEKIDAVYEAPQEEKAVFFAGN   96 (218)
T ss_dssp             EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGG-----------TCTTSCSCCSEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHH-----------hcCCCCCCccEEEEECCCCEEEEEeCC
Confidence            34456899999988       335665543321 11111000           011122333333332 26899999763


Q ss_pred             CCCCCCcceEEEEECCCCc---EEEeecCCCCCCCCcC-cEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEE-
Q 010551          110 YKKSSDSMIVRFIDLETNL---CGVMETSGKVPVTRGG-HSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-  182 (507)
Q Consensus       110 ~~~~~~~~~~~~yd~~t~~---W~~~~~~g~~p~~r~~-~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~-  182 (507)
                              ..|+|+..+..   =+.+...| .|..... .++...  ++++|+|-|.        ..|+||..+.+-.. 
T Consensus        97 --------~yW~y~~~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG~--------~ywr~d~~~~~v~~g  159 (218)
T 1gen_A           97 --------EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPG  159 (218)
T ss_dssp             --------EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECSS
T ss_pred             --------EEEEEcCccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEECC--------EEEEEECccccccCC
Confidence                    38889852110   01111112 2221112 233332  5799999773        48899987653221 


Q ss_pred             ----ec-cCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          183 ----VE-VTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       183 ----~~-~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                          +. .=..+|  ..-.++.... ++.+|+|-|       +..|+||..+..
T Consensus       160 yPr~i~~~w~g~p--~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~  204 (218)
T 1gen_A          160 FPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK  204 (218)
T ss_dssp             CCEEHHHHSSSCC--SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred             CCcchhhccCCCC--CCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence                11 000122  2233444443 578999977       468888876554

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=84.12  E-value=5  Score=29.74  Aligned_cols=40  Identities=30%  Similarity=0.516  Sum_probs=27.1

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010551          448 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       448 ~~~e~~~~e~~~~~~~~~~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      .+++.++.++++++..++..+++.-.++.+-.-++.+|+.
T Consensus        50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~   89 (96)
T 1t3j_A           50 KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELEN   89 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4556666667777777777777777777666667777664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=84.03  E-value=26  Score=32.19  Aligned_cols=145  Identities=16%  Similarity=0.159  Sum_probs=71.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++..++.|+.+     ..+.++|+.++.-...-...                  ......+.+  ++.+++.|+.+.   
T Consensus        76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~l~s~s~D~---  129 (319)
T 3frx_A           76 DGAYALSASWD-----KTLRLWDVATGETYQRFVGH------------------KSDVMSVDIDKKASMIISGSRDK---  129 (319)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTTEEEEEEECC------------------SSCEEEEEECTTSCEEEEEETTS---
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCCeeEEEccC------------------CCcEEEEEEcCCCCEEEEEeCCC---
Confidence            45555666543     45889999877532211100                  111122222  455666666543   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--------CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--------GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT  186 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--------~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~  186 (507)
                         .+.+||.....-..+.  +.    ......+.+        ++.+++.||.+.      .+..+|+.+.+-...-. 
T Consensus       130 ---~i~vwd~~~~~~~~~~--~h----~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~-  193 (319)
T 3frx_A          130 ---TIKVWTIKGQCLATLL--GH----NDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADFI-  193 (319)
T ss_dssp             ---CEEEEETTSCEEEEEC--CC----SSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEEC-
T ss_pred             ---eEEEEECCCCeEEEEe--cc----CCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheeec-
Confidence               3777887654333221  11    011111222        223556666543      48888987765432211 


Q ss_pred             CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          187 QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       187 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      +.   ...-.+++...++.+++.||.+     ..+.++|+.+.+-
T Consensus       194 ~h---~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~~~~~~  230 (319)
T 3frx_A          194 GH---NSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKA  230 (319)
T ss_dssp             CC---CSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEE
T ss_pred             CC---CCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence            11   1111223333455577777754     3688899887653

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.90  E-value=3.8  Score=32.51  Aligned_cols=28  Identities=11%  Similarity=0.255  Sum_probs=12.2

Q ss_pred             HHHHhhccchhHHHhHHHHHhhHHHhhh
Q 010551          418 KIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       418 ~l~~~~~~~~e~~~el~~~~~~~~~~~~  445 (507)
                      ++.++...+..+..++.....++..++.
T Consensus        33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~   60 (135)
T 2e7s_A           33 DYNTLKRELSDRDDEVKRLREDIAKENE   60 (135)
T ss_dssp             HHHHHHHHTTTHHHHHHTHHHHHHHTTS
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=83.66  E-value=18  Score=36.66  Aligned_cols=153  Identities=8%  Similarity=-0.047  Sum_probs=73.5

Q ss_pred             CEEEEEeccCCCCCCcceEEEEEC--CCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEcCCCCCCCccCcEEEEECCC
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDL--ETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      +++.+.+..... .....+|..++  .... ..+.   ..+.. . ..+...++ .+++..+...      .+.+||+.+
T Consensus        75 d~~l~~~~~~~g-~~~~~l~~~~~~~~g~~-~~l~---~~~~~-~-~~~~s~dg~~~~~~s~~~~------~~~l~d~~~  141 (582)
T 3o4h_A           75 GRVILVRDVSKG-AEQHALFKVNTSRPGEE-QRLE---AVKPM-R-ILSGVDTGEAVVFTGATED------RVALYALDG  141 (582)
T ss_dssp             SEEEEEEECSTT-SCCEEEEEEETTSTTCC-EECT---TSCSB-E-EEEEEECSSCEEEEEECSS------CEEEEEEET
T ss_pred             CeEEEEeccCCC-CcceEEEEEeccCCCcc-cccc---CCCCc-e-eeeeCCCCCeEEEEecCCC------CceEEEccC
Confidence            355554443111 12345788887  4433 2322   11111 1 22334444 5555544322      244778888


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  256 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  256 (507)
                      ++-..+...   +.    ...+.-.+++.+++++.+... ...++++|+.++.+..+...   +.  .....+.. +++.
T Consensus       142 g~~~~l~~~---~~----~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~~---~~--~~~~~~~SpDG~~  208 (582)
T 3o4h_A          142 GGLRELARL---PG----FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFDSG---EG--SFSSASISPGMKV  208 (582)
T ss_dssp             TEEEEEEEE---SS----CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEECCS---SC--EEEEEEECTTSCE
T ss_pred             CcEEEeecC---CC----ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEeecC---CC--ccccceECCCCCE
Confidence            877666531   11    233332333355554433221 23599999999888765321   11  11111111 4444


Q ss_pred             EEEeccCCCCCcceEEEEECCCCcEE
Q 010551          257 YIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~~~W~  282 (507)
                      ++.+..   .....++++|+.+....
T Consensus       209 l~~~~~---~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          209 TAGLET---AREARLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEEEC---SSCEEEEEECTTTCCEE
T ss_pred             EEEccC---CCeeEEEEEcCCCCcEE
Confidence            443321   22356888888887766

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=83.47  E-value=4.5  Score=28.22  Aligned_cols=48  Identities=17%  Similarity=0.266  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHHHHhhhhHHHHhhhhhhHHHHHHhhccchhHHHhHHHH
Q 010551          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~e~~~el~~~  436 (507)
                      .+++.|-.+..++.+......--...|-..++++..+.+-+..|+...
T Consensus         9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~   56 (77)
T 2w83_C            9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV   56 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            334555444444433333333344445555555554444443333333

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=83.34  E-value=23  Score=31.11  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             ECCEEEEEeccCCCCCCcceEEEEECCCC----cEEEee-c--CC--CCCCC--CcCcEEEEE---CCEEEEEcCCCCCC
Q 010551           99 WGTKLLILGGHYKKSSDSMIVRFIDLETN----LCGVME-T--SG--KVPVT--RGGHSVTLV---GSRLIIFGGEDRSR  164 (507)
Q Consensus        99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~----~W~~~~-~--~g--~~p~~--r~~~~~~~~---~~~iy~~GG~~~~~  164 (507)
                      .++++|+|-|.        .+|+||..++    ....-+ .  .+  .+|..  ....-++..   ++++|+|-|.    
T Consensus        69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~----  136 (225)
T 3oyo_A           69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN----  136 (225)
T ss_dssp             STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT----
T ss_pred             CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC----
Confidence            58999999773        3899986432    221110 0  01  12221  012223332   5799999884    


Q ss_pred             CccCcEEEEECCCCcEEEe-ccCC-CCCC------CCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCC
Q 010551          165 KLLNDVHFLDLETMTWDAV-EVTQ-TPPA------PRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       165 ~~~n~~~~~d~~t~~W~~~-~~~~-~~p~------~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~  228 (507)
                          ..|+||..+.+...- .... ..|.      +..-.++... .++++|+|-|       +..|+||..+
T Consensus       137 ----~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~~  198 (225)
T 3oyo_A          137 ----KYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFTP  198 (225)
T ss_dssp             ----EEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECCT
T ss_pred             ----eEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCc
Confidence                479999776655431 1100 1221      2223333333 5788999988       4789999873

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=83.17  E-value=32  Score=32.66  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=57.6

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      +++.++.|+.+.      .+.++|+.+.+-...-. +.   ...-.+++...++..++.|+.+     ..+.++|+.++.
T Consensus       134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~~-~h---~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~  198 (393)
T 1erj_A          134 DGKFLATGAEDR------LIRIWDIENRKIVMILQ-GH---EQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQ  198 (393)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEEC-CC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEEEc-cC---CCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCe
Confidence            456677777653      58999998876443321 11   1112233333444456666654     368889998876


Q ss_pred             EEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcE
Q 010551          231 WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       231 W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  281 (507)
                      ...... .    .....+++..  ++.+++.|+.++     .+.+||+.+..-
T Consensus       199 ~~~~~~-~----~~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~  241 (393)
T 1erj_A          199 CSLTLS-I----EDGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFL  241 (393)
T ss_dssp             EEEEEE-C----SSCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCE
T ss_pred             eEEEEE-c----CCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcE
Confidence            543211 0    1111122222  457777777543     377888877653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=83.17  E-value=33  Score=32.79  Aligned_cols=216  Identities=8%  Similarity=-0.026  Sum_probs=110.6

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      +++.+|+.......+..     ......+++..  ++.||+.--     ....++.+++.......+.....        
T Consensus        97 ~I~~i~~~~~~~~~~~~-----~~~~~~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~--------  158 (386)
T 3v65_B           97 DIRQVLPHRSEYTLLLN-----NLENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGL--------  158 (386)
T ss_dssp             CEEEECTTSCCCEEEEC-----SCSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSSC--------
T ss_pred             cceeeccCCCcEEEEec-----CCCccEEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCCC--------
Confidence            34455555555444432     11222333333  578887743     12468889988766554432210        


Q ss_pred             CCCcCCCCCccceeEEE--ECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEE
Q 010551           82 SGLLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~  157 (507)
                              .. -.++++  .++.||+.-..      ...++++++....-..+... .+..|   ..+++-  ++.||+.
T Consensus       159 --------~~-p~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~-~l~~P---~giavdp~~g~ly~t  219 (386)
T 3v65_B          159 --------ES-PGGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQ-SLEKP---RAIALHPMEGTIYWT  219 (386)
T ss_dssp             --------SC-CCCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECS-SCSCE---EEEEEETTTTEEEEE
T ss_pred             --------CC-ccEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecC-CCCCC---cEEEEEcCCCeEEEe
Confidence                    01 122333  37889987432      34688888876553433321 11111   122332  5688876


Q ss_pred             cCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      --..     .+.++++++....-..+...+ +.   .-.++++- .++.||+.-..     .+.|+++|+....-..+..
T Consensus       220 d~~~-----~~~I~r~~~dG~~~~~~~~~~-~~---~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~  285 (386)
T 3v65_B          220 DWGN-----TPRIEASSMDGSGRRIIADTH-LF---WPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVIS  285 (386)
T ss_dssp             ECSS-----SCEEEEEETTSCSCEEEECSS-CS---CEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEEC
T ss_pred             ccCC-----CCEEEEEeCCCCCcEEEEECC-CC---CeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEE
Confidence            3211     357999998765444432211 11   11233332 46779886432     3579999886533222211


Q ss_pred             CCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                       ...   ...+++++.++.+|+.--     ....+..+|..+.
T Consensus       286 -~~~---~~P~giav~~~~ly~td~-----~~~~V~~~~~~~G  319 (386)
T 3v65_B          286 -QGL---PHPFAITVFEDSLYWTDW-----HTKSINSANKFTG  319 (386)
T ss_dssp             -SSC---SSEEEEEEETTEEEEEET-----TTTEEEEEETTTC
T ss_pred             -CCC---CCceEEEEECCEEEEeeC-----CCCeEEEEECCCC
Confidence             111   223466677888998842     2235778884443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=82.98  E-value=14  Score=28.19  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHH
Q 010551          465 QTIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       465 ~~le~e~~~~~~~~~~~~~~~  485 (507)
                      ++|+-|+..+.++++..+.++
T Consensus        74 qeLqgEI~~Lnq~Lq~a~ae~   94 (121)
T 3mq7_A           74 EELEGEITTLNHKLQDASAEV   94 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444333333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=82.43  E-value=28  Score=31.52  Aligned_cols=109  Identities=9%  Similarity=0.064  Sum_probs=53.5

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCCCcCcEEEEE----CCEEEEEcCCCCCCCccCcEEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVTRGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~----~~~iy~~GG~~~~~~~~n~~~~~  173 (507)
                      ++.+++.|+.+.      .+.+||..++  .+.....   .........++.+    ++.+++.|+.++      .+.+|
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~dg------~v~vw   86 (351)
T 3f3f_A           22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYDK------TVKLW   86 (351)
T ss_dssp             SSSEEEEEETTS------EEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETTS------CEEEE
T ss_pred             CCCEEEEeeCCC------eEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCCC------eEEEE
Confidence            455666666432      3667776643  4444331   1111222233333    256777777653      47888


Q ss_pred             ECCCC-------cEEEeccCCCCCCCCCCceEEEEcC--CEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          174 DLETM-------TWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       174 d~~t~-------~W~~~~~~~~~p~~r~~~~~~~~~~--~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      |+.+.       .|..+.....  ....-.+++...+  +.+++.|+.+     ..+.+||+.+..
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~  145 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLND--SKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPS  145 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTT
T ss_pred             ecCCCcccccccCcceeeeecc--cCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChH
Confidence            88664       2343332111  1111122233333  4466666654     358888887653

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.30  E-value=5.1  Score=31.77  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=12.2

Q ss_pred             hhhhHHHHHHhhccchhHHHhHHHHHhhHHHh
Q 010551          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       412 ~~~l~~~l~~~~~~~~e~~~el~~~~~~~~~~  443 (507)
                      ..+|...+.+-...-.+.++++..+..+++.+
T Consensus        48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L   79 (135)
T 2e7s_A           48 VKRLREDIAKENELRTKAEEEADKLNKEVEDL   79 (135)
T ss_dssp             HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444333

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=82.29  E-value=35  Score=32.47  Aligned_cols=110  Identities=11%  Similarity=0.052  Sum_probs=59.3

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCc--E-EEeecCCCCCCCCcCc-EEEEE--CCEEEEEcCCCCCCCccCcEEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNL--C-GVMETSGKVPVTRGGH-SVTLV--GSRLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W-~~~~~~g~~p~~r~~~-~~~~~--~~~iy~~GG~~~~~~~~n~~~~~  173 (507)
                      ++++|+|-|.        .+|+|+..+..  + ..+...| +|..-... ++...  ++++|+|-|.        ..|+|
T Consensus       236 ~g~~~fFkg~--------~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG~--------~yw~y  298 (365)
T 3ba0_A          236 RNQVFLFKDD--------KYWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVDN--------QYWRY  298 (365)
T ss_dssp             GTEEEEEETT--------EEEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEETT--------EEEEE
T ss_pred             CCEEEEEeCC--------EEEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEECC--------EEEEE
Confidence            7899999763        27777643221  1 1222111 33321122 33333  4699999773        48899


Q ss_pred             ECCCCcEEEeccC----CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          174 DLETMTWDAVEVT----QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       174 d~~t~~W~~~~~~----~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      |..+.+-..-.+.    +-+..+..-.++....++++|+|-|       +..|+||..+.+-..
T Consensus       299 d~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~  355 (365)
T 3ba0_A          299 DERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK  355 (365)
T ss_dssp             ETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             eCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence            9776542211000    0011122233444454777999977       479999998877654

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=82.29  E-value=2.9  Score=30.69  Aligned_cols=14  Identities=7%  Similarity=0.178  Sum_probs=5.9

Q ss_pred             HHHHhHHHHHHHHH
Q 010551          473 ILRQQKSAFEQEME  486 (507)
Q Consensus       473 ~~~~~~~~~~~~~~  486 (507)
                      .+.+++.+|..||+
T Consensus        72 ~YEeEI~rLr~eLe   85 (92)
T 3vp9_A           72 AYEEEIKHLKLGLE   85 (92)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444443

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=82.14  E-value=12  Score=27.19  Aligned_cols=11  Identities=55%  Similarity=0.667  Sum_probs=4.1

Q ss_pred             HHHHHHHHHHH
Q 010551          466 TIENEVQILRQ  476 (507)
Q Consensus       466 ~le~e~~~~~~  476 (507)
                      +|+-|+..+.+
T Consensus        71 elqgEI~~Lnq   81 (99)
T 3ni0_A           71 ELENEVTKLNQ   81 (99)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=81.74  E-value=5.2  Score=28.30  Aligned_cols=8  Identities=25%  Similarity=0.684  Sum_probs=2.9

Q ss_pred             hHHHHHHh
Q 010551          415 FREKIDEV  422 (507)
Q Consensus       415 l~~~l~~~  422 (507)
                      |+-.+.++
T Consensus        31 Lr~kv~el   38 (81)
T 3qh9_A           31 LKIKVEEL   38 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=81.55  E-value=52  Score=34.52  Aligned_cols=17  Identities=12%  Similarity=-0.031  Sum_probs=13.1

Q ss_pred             cceEEEEECCCCcEEEe
Q 010551          116 SMIVRFIDLETNLCGVM  132 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~  132 (507)
                      ..++++||+.++.-..+
T Consensus        91 ~~~~~~~d~~~~~~~~l  107 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITE  107 (740)
T ss_dssp             EEEEEEEETTTTEECCS
T ss_pred             ceEEEEEECCCCcEEEc
Confidence            35789999999976544

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=81.24  E-value=3.8  Score=23.74  Aligned_cols=28  Identities=11%  Similarity=0.281  Sum_probs=16.4

Q ss_pred             HHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010551          461 LESSQTIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       461 ~~~~~~le~e~~~~~~~~~~~~~~~~~~  488 (507)
                      |++-++|.+++++-+.++.++.++.+++
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL   33 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKEL   33 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4444556666666666666666555544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=81.10  E-value=29  Score=30.78  Aligned_cols=197  Identities=9%  Similarity=-0.019  Sum_probs=105.4

Q ss_pred             ceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEE
Q 010551           31 HAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLIL  106 (507)
Q Consensus        31 ~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~  106 (507)
                      +.+++-  ++.||+.-..     .+.+++||+....-..+....                 ...-++++..  ++.||+.
T Consensus        39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~-----------------~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQD-----------------LGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECTT-----------------CCCEEEEEEETTTTEEEEE
T ss_pred             EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEECC-----------------CCCccEEEEEecCCeEEEE
Confidence            445544  5788887542     356999999765432222110                 0112344443  5789987


Q ss_pred             eccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEec
Q 010551          107 GGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  184 (507)
Q Consensus       107 GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~  184 (507)
                      -..      ...+.++++....-..+...+ .  ... ..+++-  +++||+.....    ..+.+++++++...-..+.
T Consensus        97 d~~------~~~I~~~~~~g~~~~~~~~~~-~--~~P-~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~  162 (267)
T 1npe_A           97 DSQ------LDRIEVAKMDGTQRRVLFDTG-L--VNP-RGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILA  162 (267)
T ss_dssp             ETT------TTEEEEEETTSCSCEEEECSS-C--SSE-EEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEE
T ss_pred             ECC------CCEEEEEEcCCCCEEEEEECC-C--CCc-cEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEE
Confidence            532      346899998765434333221 1  111 223332  57898875321    1356889988654433332


Q ss_pred             cCCCCCCCCCCceEEEEc-CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccC
Q 010551          185 VTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGD  263 (507)
Q Consensus       185 ~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~  263 (507)
                      .. ..   ..-.+++.-. ++.||+.-..     .+.+++||+....-..+.....     ..++++..++.+|+.... 
T Consensus       163 ~~-~~---~~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~~-----~P~gi~~d~~~lyva~~~-  227 (267)
T 1npe_A          163 QD-NL---GLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGLQ-----YPFAVTSYGKNLYYTDWK-  227 (267)
T ss_dssp             CT-TC---SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECCC-----SEEEEEEETTEEEEEETT-
T ss_pred             EC-CC---CCCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecCCC-----CceEEEEeCCEEEEEECC-
Confidence            11 11   1122333332 5678886432     3579999987643332211111     223556667889987432 


Q ss_pred             CCCCcceEEEEECCCCcEE
Q 010551          264 NNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       264 ~~~~~~~~~~~d~~~~~W~  282 (507)
                          .+.++++|+.+.+..
T Consensus       228 ----~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          228 ----TNSVIAMDLAISKEM  242 (267)
T ss_dssp             ----TTEEEEEETTTTEEE
T ss_pred             ----CCeEEEEeCCCCCce
Confidence                246899999877644

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=80.85  E-value=30  Score=35.98  Aligned_cols=107  Identities=10%  Similarity=0.033  Sum_probs=53.8

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCC---CCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRS---RKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~---~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                      .++++|+.+++-..+........  .......+  +++.++++..+..   ..+...++++|+.+.+-..+..... ...
T Consensus        38 ~i~~~d~~~g~~~~~~~~~~~~~--~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~  114 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIEGKKIES--LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNA  114 (723)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTT--TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSC
T ss_pred             CEEEEECCCCcEEEEeccccccc--cccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccc
Confidence            48899998887655542111100  01222333  4554555543321   1234789999999887655543211 001


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      ... ..+.-.++..++++..      ++++++|+.++....+
T Consensus       115 ~~~-~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A          115 KLQ-YAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             CCS-BCCBCSSTTCEEEEET------TEEEEESSSSSCCEEE
T ss_pred             ccc-ccEECCCCCEEEEEEC------CeEEEEECCCCceEEE
Confidence            111 1122223334444432      3788998888766554

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=80.04  E-value=2.5  Score=27.62  Aligned_cols=26  Identities=12%  Similarity=0.153  Sum_probs=12.4

Q ss_pred             HHhhHHHhhhhhhhhHHHHHHHHHHH
Q 010551          436 VQGQLVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       436 ~~~~~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      .+.+++.++.++..|+.+++|++.++
T Consensus        24 Lk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           24 LRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444455555554444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	9e-15
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-08
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	8e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-08

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (176), Expect = 9e-15
 Identities = 45/289 (15%), Positives = 74/289 (25%), Gaps = 31/289 (10%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
             W+ L        PR   A  V    LY VGG  N    +            +N     
Sbjct: 29  GTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC 85

Query: 73  ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 132
                               +   V      +   G          V   + E +     
Sbjct: 86  APM-------------SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD---EW 129

Query: 133 ETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192
                +   R G  V ++   L   GG D + + LN       E   W  +    T    
Sbjct: 130 HLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAMNTI--- 185

Query: 193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252
               +     +  +   GG       N +   D++T  W+       +   R+       
Sbjct: 186 -RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVH 241

Query: 253 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC 301
               Y++GG D +         +     WS +T +         G+ V 
Sbjct: 242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVGVA 286

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 5/120 (4%)

Query: 150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF 209
           VG  +   GG  R    L+ +   +    TW  +        PR   +  +       V 
Sbjct: 3   VGRLIYTAGGYFRQS--LSYLEAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVG 57

Query: 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ 269
           G  +      D   LD      +Q      +   R       ID + Y VGG        
Sbjct: 58  GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 117

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 8e-08
 Identities = 13/68 (19%), Positives = 22/68 (32%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
                  +E       T          R      V   ++Y++GG     FL  V+ +D 
Sbjct: 206 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 265

Query: 61  RSLAWSNL 68
            +  WS +
Sbjct: 266 DTDTWSEV 273

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 35/314 (11%), Positives = 75/314 (23%), Gaps = 40/314 (12%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSD------VQVFDLRSLAWSNLRLETELDADK 78
           P      A      ++ +    RN  F            +D  +   S+           
Sbjct: 18  PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------- 68

Query: 79  TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGK 137
                       ++ H M   G  +   G        D+      D  ++    +     
Sbjct: 69  ----------VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW--IPGPDM 116

Query: 138 VPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 197
                   S T+   R+   GG         +       + TW ++   +  P    D  
Sbjct: 117 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 176

Query: 198 AALHANRYLIVFGGCSHSIFF-----NDLHVLDLQTNEWSQPE-------IKGDLVTGRA 245
               ++ +  +FG    S+F               + +            +  D + G A
Sbjct: 177 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 236

Query: 246 GHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII 305
                   +     G  D  +    T    +T        +    +       +  ++++
Sbjct: 237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 296

Query: 306 EGEHHLVAFGGYNG 319
             +      GG   
Sbjct: 297 LPDGSTFITGGQRR 310

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.97
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.62
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.48
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.46
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.31
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.25
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.23
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.75
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.64
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.59
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.32
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.21
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.06
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.02
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.96
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	94.89
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	94.75
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	94.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.4
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.34
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	94.32
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.22
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.18
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.11
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.93
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	93.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	93.55
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.41
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	93.4
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	93.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	93.19
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.83
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	92.67
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	92.6
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.26
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	91.64
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	91.34
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.16
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	90.8
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.43
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	90.41
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	89.55
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	89.11
d1tbga_	340	beta1-subunit of the signal-transducing G protein	88.18
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	87.05
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	86.2
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	85.9
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	85.39
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	85.03
d1tbga_	340	beta1-subunit of the signal-transducing G protein	83.51
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	83.45
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	83.39
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.99

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=300.37  Aligned_cols=262  Identities=18%  Similarity=0.220  Sum_probs=230.0

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCC----CCccCCceEEEEccCCceeeeccccccCCCc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR----NGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~----~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~   78 (507)
                      .++++||+.+++|+.++   ++|.||.+|++++++++|||+||..    ....++++++||+.+++|+.++++       
T Consensus        19 ~~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~-------   88 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM-------   88 (288)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC-------
T ss_pred             ceEEEEECCCCeEEECC---CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccc-------
Confidence            46789999999999998   7999999999999999999999953    235678999999999999998754       


Q ss_pred             cccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEc
Q 010551           79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFG  158 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~G  158 (507)
                               |.+|.+|++++++++||++||...... .++++.||+.+..|....   .+|.+|.+|+++.+++.+|++|
T Consensus        89 ---------p~~r~~~~~~~~~~~i~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~G  155 (288)
T d1zgka1          89 ---------SVPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVG  155 (288)
T ss_dssp             ---------SSCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEC
T ss_pred             ---------cceecceeccccceeeEEecceecccc-cceeeeeccccCcccccc---ccccccccceeeeeeecceEec
Confidence                     557999999999999999999876554 778999999999999876   7889999999999999999999


Q ss_pred             CCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCC
Q 010551          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       159 G~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      |.+... ..++++.||+.+++|.....   .+.++..++++.+. ++++++||.+.....++.+.||+.+++|..+   .
T Consensus       156 G~~~~~-~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~---~  227 (288)
T d1zgka1         156 GFDGTN-RLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLH-NCIYAAGGYDGQDQLNSVERYDVETETWTFV---A  227 (288)
T ss_dssp             CBCSSC-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEEEEC---C
T ss_pred             Cccccc-ccceEEEeeccccccccccc---ccccccccccccee-eeEEEecCccccccccceeeeeecceeeecc---c
Confidence            987543 47789999999999998864   56678888888875 4599999998888899999999999999997   5


Q ss_pred             CCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCc
Q 010551          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS  299 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~  299 (507)
                      +.|.+|..|+++.++++||||||.+....++++++||+.+++|+.+..+|.    +|.+|+
T Consensus       228 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~----~R~~~~  284 (288)
T d1zgka1         228 PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTS----GRSGVG  284 (288)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS----CCBSCE
T ss_pred             CccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCC----CcEeEE
Confidence            788999999999999999999999888888999999999999999987743    455554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-38  Score=297.21  Aligned_cols=275  Identities=20%  Similarity=0.285  Sum_probs=233.7

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCC--
Q 010551           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS--  113 (507)
Q Consensus        36 ~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~--  113 (507)
                      +++.||++||... ...+++++||+.+++|+.++.+                |.+|.+|++++++++||++||.....  
T Consensus         3 ~g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~----------------p~~R~~~~~~~~~~~iyv~GG~~~~~~~   65 (288)
T d1zgka1           3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGGLLYAVGGRNNSPDG   65 (288)
T ss_dssp             CCCCEEEECCBSS-SBCCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCEEEETTE
T ss_pred             cCCEEEEECCcCC-CCCceEEEEECCCCeEEECCCC----------------CCccceeEEEEECCEEEEEeCcccCCCC
Confidence            4678999999865 4678999999999999998754                55799999999999999999985332  


Q ss_pred             -CCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          114 -SDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       114 -~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                       ...+++++||+.+++|+.+.   ++|.+|.+|+++.++++||++||.... ...++++.||+.+..|....   ..+.+
T Consensus        66 ~~~~~~~~~yd~~~~~w~~~~---~~p~~r~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~  138 (288)
T d1zgka1          66 NTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVA---PMLTR  138 (288)
T ss_dssp             EEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECC---CCSSC
T ss_pred             ccccchhhhcccccccccccc---cccceecceeccccceeeEEecceecc-cccceeeeeccccCcccccc---ccccc
Confidence             24678999999999999987   899999999999999999999998654 35788999999999998876   46778


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEE
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~  272 (507)
                      |..|+++.+ ++.++++||.......++++.||+.++.|...   ...+.++..|+++.++++++++||......+++++
T Consensus       139 r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~  214 (288)
T d1zgka1         139 RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE  214 (288)
T ss_dssp             CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEE
T ss_pred             cccceeeee-eecceEecCcccccccceEEEeeccccccccc---cccccccccccccceeeeEEEecCcccccccccee
Confidence            999999888 45599999998888888999999999999986   56677889999999999999999998888889999


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCC-cCceEEEEECCCCCCCCCcccCCchh
Q 010551          273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAA  346 (507)
Q Consensus       273 ~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~  346 (507)
                      .||+.+++|..++++|    .+|.++  +++.+++  .||||||.++. ..+++|+||+..+.|.....++.++.
T Consensus       215 ~~~~~~~~~~~~~~~p----~~r~~~--~~~~~~~--~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~  281 (288)
T d1zgka1         215 RYDVETETWTFVAPMK----HRRSAL--GITVHQG--RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRS  281 (288)
T ss_dssp             EEETTTTEEEECCCCS----SCCBSC--EEEEETT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB
T ss_pred             eeeecceeeecccCcc----Ccccce--EEEEECC--EEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcE
Confidence            9999999999987553    344444  4445544  79999998764 67889999999999998887766654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.97  E-value=4e-29  Score=247.25  Aligned_cols=288  Identities=13%  Similarity=0.149  Sum_probs=202.2

Q ss_pred             CCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCcc------CCceEEEEccCCceeeeccccccCCCccccCC
Q 010551           10 LPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRF------LSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus        10 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~------~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      |..++|...+   ++|..|..++++..+++||+|||+.....      ...+++||+.+++|..++.+..          
T Consensus         6 p~~g~W~~~~---~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----------   72 (387)
T d1k3ia3           6 PGLGRWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----------   72 (387)
T ss_dssp             TTSCEEEEEE---ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----------
T ss_pred             CCCCccCCcC---CCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC----------
Confidence            5678999887   68888876666666999999999764332      3357899999999988776532          


Q ss_pred             CcCCCCCccceeEEEE-CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCC
Q 010551           84 LLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGED  161 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~  161 (507)
                          +..+.+++.+.. +++||++||...     +++++||+.+++|+...   +||.+|..|+++.+ ++++|++||..
T Consensus        73 ----~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          73 ----KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             ----SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             ----CcccceeEEEEecCCcEEEeecCCC-----cceeEecCccCcccccc---cccccccccceeeecCCceeeecccc
Confidence                233444444433 788999998653     45899999999999876   89999999998887 56999999998


Q ss_pred             CCCCccCcEEEEECCCCcEEEeccCCCC----------------------------------------------------
Q 010551          162 RSRKLLNDVHFLDLETMTWDAVEVTQTP----------------------------------------------------  189 (507)
Q Consensus       162 ~~~~~~n~~~~~d~~t~~W~~~~~~~~~----------------------------------------------------  189 (507)
                      .....++++++||+.+++|..+......                                                    
T Consensus       141 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~  220 (387)
T d1k3ia3         141 SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK  220 (387)
T ss_dssp             CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred             ccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccc
Confidence            7777889999999999999987542111                                                    


Q ss_pred             --------CCCCCCceEEE-EcCCEEEEEcCCCCCCC---CCcEEEEE-----CCCCcEEecccCCCCCCCCCccEEEEE
Q 010551          190 --------PAPRYDHSAAL-HANRYLIVFGGCSHSIF---FNDLHVLD-----LQTNEWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       190 --------p~~r~~~~~~~-~~~~~l~v~GG~~~~~~---~~~i~~~d-----~~~~~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                              +..+.++++.. ..++++|+|||......   ......++     .....|..+   ..+|.+|..|+++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~r~~~~~~~~  297 (387)
T d1k3ia3         221 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLYFARTFHTSVVL  297 (387)
T ss_dssp             CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCSSCCBSCEEEEC
T ss_pred             cccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec---cccccccccceeeec
Confidence                    11111111111 12467899999754321   22233333     233455553   788999999999888


Q ss_pred             -CCeEEEEeccCCC------CCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCC-C---Cc
Q 010551          253 -DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-G---KY  321 (507)
Q Consensus       253 -~~~l~v~GG~~~~------~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~-~---~~  321 (507)
                       +++|||+||....      ...+.+++||+.+++|+.+++++    .+|.+|+.+  ++..+..|||+||.. +   ..
T Consensus       298 ~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~----~~R~~Hs~a--~l~~dG~v~v~GG~~~~~~~~~  371 (387)
T d1k3ia3         298 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS----IVRVYHSIS--LLLPDGRVFNGGGGLCGDCTTN  371 (387)
T ss_dssp             TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS----SCCCTTEEE--EECTTSCEEEEECCCCTTCSCC
T ss_pred             cCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC----CcccceEEE--EECCCCEEEEEeCCCcCCCCcc
Confidence             5699999996532      22456889999999999997764    345555443  342333688999943 2   14


Q ss_pred             CceEEEEECC
Q 010551          322 NNEVFVMRLK  331 (507)
Q Consensus       322 ~~~~~~~~~~  331 (507)
                      ..++.+|++.
T Consensus       372 ~~~~e~y~Pp  381 (387)
T d1k3ia3         372 HFDAQIFTPN  381 (387)
T ss_dssp             CCEEEEEECG
T ss_pred             cceEEEEcch
Confidence            5678899873

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.93  E-value=8e-25  Score=216.01  Aligned_cols=254  Identities=15%  Similarity=0.167  Sum_probs=176.8

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCC-CCCccCCceEEEEccCCceeeeccccccCCCccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGS-RNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~-~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~   80 (507)
                      ..+++||+.++.|+.++   .+|.+|..|+++++ +++||++||. ......+++++||+.+++|..++.....-..   
T Consensus        98 ~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~---  171 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML---  171 (387)
T ss_dssp             TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC---
T ss_pred             cceeEecCccCcccccc---cccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccc---
Confidence            46899999999999998   79999999999988 6799999995 4466788999999999999998765421000   


Q ss_pred             cCCCcCCCCCcc-ce--eEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC----CCCCCCCcCcEEEEE--C
Q 010551           81 DSGLLEVLPPMS-DH--CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS----GKVPVTRGGHSVTLV--G  151 (507)
Q Consensus        81 ~~~~~~~p~~r~-~~--~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~----g~~p~~r~~~~~~~~--~  151 (507)
                        ........+. .+  .....++++|++||.      ...++.|++.+..|......    +..+..+.++++...  +
T Consensus       172 --~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (387)
T d1k3ia3         172 --TADKQGLYRSDNHAWLFGWKKGSVFQAGPS------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK  243 (387)
T ss_dssp             --CCCTTGGGTTTCSCCEEECGGGCEEECCSS------SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred             --cccccceeeccceeEEEEeCCCCEEEecCc------CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccC
Confidence              0000000011 11  112225666776663      45689999999999876532    123444555554443  6


Q ss_pred             CEEEEEcCCCCCCCc--cCcEEEEEC-----CCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCC------CCC
Q 010551          152 SRLIIFGGEDRSRKL--LNDVHFLDL-----ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------IFF  218 (507)
Q Consensus       152 ~~iy~~GG~~~~~~~--~n~~~~~d~-----~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~------~~~  218 (507)
                      +++|+|||.......  ......++.     ....|..+   +.+|.+|..|+++++.+++|||+||....      ...
T Consensus       244 g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~  320 (387)
T d1k3ia3         244 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV  320 (387)
T ss_dssp             TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred             CceEEEEeccCCCCCcccceeecccccccccCCCceeec---cccccccccceeeeccCCeEEEECCcccCccCCCCcEe
Confidence            899999997543221  222333332     23345444   46889999999999988779999997532      345


Q ss_pred             CcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCC---CcceEEEEEC
Q 010551          219 NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNN---GCQETIVLNM  276 (507)
Q Consensus       219 ~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~---~~~~~~~~d~  276 (507)
                      +.+++||+.+++|+.+   .++|.+|.+|+++++  ++++||+||.....   ...++.+|++
T Consensus       321 ~~ve~Ydp~~~~W~~~---~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~P  380 (387)
T d1k3ia3         321 FTPEIYVPEQDTFYKQ---NPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP  380 (387)
T ss_dssp             CCCEEEEGGGTEEEEC---CCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred             ceEEEEECCCCeEEEC---CCCCCcccceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcc
Confidence            5789999999999997   678999999998877  77999999953322   3457888886

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.72  E-value=0.16  Score=44.24  Aligned_cols=255  Identities=12%  Similarity=0.046  Sum_probs=126.9

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      .+.++|+.+.+....-..|     ...+.+++-  +..||+.++.     .+.+.+||+.++.-...-...         
T Consensus        13 ~v~v~D~~t~~~~~~i~~g-----~~p~~va~spdG~~l~v~~~~-----~~~i~v~d~~t~~~~~~~~~~---------   73 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVG-----SNPMGAVISPDGTKVYVANAH-----SNDVSIIDTATNNVIATVPAG---------   73 (301)
T ss_dssp             EEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEECS---------
T ss_pred             EEEEEECCCCeEEEEEECC-----CCceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCceeeeeecc---------
Confidence            3678899998877543222     122344443  4568877652     246999999887643322111         


Q ss_pred             CCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEE
Q 010551           82 SGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIF  157 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~  157 (507)
                               ..-+.++..  +..+++.+..      ...+.+++..+++.......     ....+.++.. ++ .+++.
T Consensus        74 ---------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          74 ---------SSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             ---------SSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEE
T ss_pred             ---------ccccccccccccccccccccc------cceeeecccccceeeeeccc-----cccceEEEeecCCCeeeee
Confidence                     111233333  3345554432      23478889888875544321     1111222222 33 55554


Q ss_pred             cCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEeccc
Q 010551          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      +..+      ..+..++..+.........     ......++.. +++.+++.+..     ...+..++...........
T Consensus       134 ~~~~------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  197 (301)
T d1l0qa2         134 NNGD------KTVSVINTVTKAVINTVSV-----GRSPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDTVK  197 (301)
T ss_dssp             ETTT------TEEEEEETTTTEEEEEEEC-----CSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEE
T ss_pred             eccc------cceeeeeccccceeeeccc-----CCCceEEEeeccccceeeeccc-----ccccccccccceeeeeccc
Confidence            4432      3578888888765544321     1111222333 34545554332     1246666666665544321


Q ss_pred             CCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEE
Q 010551          237 KGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAF  314 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~  314 (507)
                      .+..     .+..+..  ++.+|+.+..   ...+.++++|+.+..-...-...        ..-...++.+.+.+|||.
T Consensus       198 ~~~~-----~~~~~~~~~g~~~~v~~~~---~~~~~v~v~D~~t~~~~~~~~~~--------~~~~~va~spdg~~l~va  261 (301)
T d1l0qa2         198 VEAA-----PSGIAVNPEGTKAYVTNVD---KYFNTVSMIDTGTNKITARIPVG--------PDPAGIAVTPDGKKVYVA  261 (301)
T ss_dssp             CSSE-----EEEEEECTTSSEEEEEEEC---SSCCEEEEEETTTTEEEEEEECC--------SSEEEEEECTTSSEEEEE
T ss_pred             ccCC-----cceeecccccccccccccc---ceeeeeeeeecCCCeEEEEEcCC--------CCEEEEEEeCCCCEEEEE
Confidence            1111     1122222  3456555432   12346889999887543221111        111233344455678887


Q ss_pred             ccCCCCcCceEEEEECCCC
Q 010551          315 GGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       315 GG~~~~~~~~~~~~~~~~~  333 (507)
                      ++.+    +.+.++|+.+.
T Consensus       262 ~~~~----~~i~v~D~~t~  276 (301)
T d1l0qa2         262 LSFC----NTVSVIDTATN  276 (301)
T ss_dssp             ETTT----TEEEEEETTTT
T ss_pred             ECCC----CeEEEEECCCC
Confidence            6643    57888898765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.62  E-value=0.18  Score=44.64  Aligned_cols=275  Identities=12%  Similarity=-0.031  Sum_probs=126.3

Q ss_pred             CCCCeEeeCCCCceEE-eecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCc
Q 010551            2 DSGSWHLELPYDLWVT-LPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~   78 (507)
                      |..+.++|+.+.+=.. ++.   .......+++++-  +..||+.|+.+     ..+.+||..+++..........    
T Consensus        10 d~~v~v~D~~s~~~~~~i~~---~~~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~~~----   77 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITI---ADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEEC---TTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCBT----
T ss_pred             CCEEEEEECCCCeEEEEEEC---CCCCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecCCC----
Confidence            4567788998876433 432   1122333344443  35678877532     4699999998776443222110    


Q ss_pred             cccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE-E
Q 010551           79 TEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL-V  150 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~  150 (507)
                              .......+.++..  ++.+|+.+.......     ....+..+|..++.=......+.     ..+.++. -
T Consensus        78 --------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~s~  144 (337)
T d1pbyb_          78 --------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWAR  144 (337)
T ss_dssp             --------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECT
T ss_pred             --------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC-----CceEEEEcC
Confidence                    0001111222222  445555543211111     23467889998887544332111     1122222 2


Q ss_pred             CC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC-------CCCceEEEEcCC---EEEEEcCCCCC----
Q 010551          151 GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP-------RYDHSAALHANR---YLIVFGGCSHS----  215 (507)
Q Consensus       151 ~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~-------r~~~~~~~~~~~---~l~v~GG~~~~----  215 (507)
                      ++ .+|+.++         +...+|+.+.+-......+..+..       ...+. ......   ...........    
T Consensus       145 dg~~l~~~~~---------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T d1pbyb_         145 DGSKLYGLGR---------DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN-QHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             TSSCEEEESS---------SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC-CCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             CCCEEEEEcC---------CcceeeeecCcEEEEeecCCccccceecCCcceeec-cccccceeeeeeeeeeeccceeee
Confidence            33 5555332         356678776653322211111100       00000 000001   01112222111    


Q ss_pred             -CCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCC
Q 010551          216 -IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLA  294 (507)
Q Consensus       216 -~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~  294 (507)
                       .....+..++..++.+.....   .+.......+....+..+++++      .+.+.++|+.+.........+.     
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~~~~~~-----  280 (337)
T d1pbyb_         215 TAYRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNASIKRVPLPH-----  280 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTEEEEEEECSS-----
T ss_pred             cccCccEEEEEcCCCcEEEEEe---cCCCcceEEEEecccceEEEEc------cccEEEEECCCCcEEEEEcCCC-----
Confidence             112347788888877665421   2233333333333333333333      1368899999887655433321     


Q ss_pred             CCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          295 SEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       295 ~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                         ...+..+.+++..||+ |+.    .+.+.+||..+.
T Consensus       281 ---~~~~~~~s~dG~~l~v-~~~----~~~i~v~D~~t~  311 (337)
T d1pbyb_         281 ---SYYSVNVSTDGSTVWL-GGA----LGDLAAYDAETL  311 (337)
T ss_dssp             ---CCCEEEECTTSCEEEE-ESB----SSEEEEEETTTC
T ss_pred             ---CEEEEEECCCCCEEEE-EeC----CCcEEEEECCCC
Confidence               1233444455566776 553    356889998754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.48  E-value=0.26  Score=43.82  Aligned_cols=194  Identities=14%  Similarity=0.077  Sum_probs=90.9

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++++++.|+.+.      .+.+||+.++.......   ++.......++.+  ++..++.+|.+..    ..+.+++..+
T Consensus        69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~v~~s~d~~~l~~~~~~~~----~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVHG------NVRIWDTTQTTHILKTT---IPVFSGPVKDISWDSESKRIAAVGEGRE----RFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETTS------EEEEEESSSTTCCEEEE---EECSSSCEEEEEECTTSCEEEEEECCSS----CSEEEEETTT
T ss_pred             CCCeEeccccCc------eEeeeeeeccccccccc---cccccCcccccccccccccccccccccc----cccccccccc
Confidence            566667776543      48888988876432221   1111111222333  3455566654322    2366777766


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEE--cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE--C
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--D  253 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~  253 (507)
                      .+-...     +.........+.+  +++++++.|+.+     ..+.+||..+.+-.....  .   ....-..+..  +
T Consensus       136 ~~~~~~-----l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~~--~---~~~~i~~v~~~p~  200 (311)
T d1nr0a1         136 GTSNGN-----LTGQARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTFG--E---HTKFVHSVRYNPD  200 (311)
T ss_dssp             CCBCBC-----CCCCSSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEEC--C---CSSCEEEEEECTT
T ss_pred             cccccc-----ccccccccccccccccceeeecccccc-----cccccccccccccccccc--c---ccccccccccCcc
Confidence            542111     1111111122223  234466667654     258889988766444211  1   1111122223  4


Q ss_pred             CeEEEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCc--eEEEEEcCceEEEEEccCCCCcCceEEEEECC
Q 010551          254 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS--VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  331 (507)
                      +.+++.|+.++     .+.+||..+..-...  +..... ...+|.  ...+.+..+..+++.||.+    ..+.++|+.
T Consensus       201 ~~~l~~~~~d~-----~v~~~d~~~~~~~~~--~~~~~~-~~~~h~~~V~~~~~s~~~~~l~tgs~D----g~v~iwd~~  268 (311)
T d1nr0a1         201 GSLFASTGGDG-----TIVLYNGVDGTKTGV--FEDDSL-KNVAHSGSVFGLTWSPDGTKIASASAD----KTIKIWNVA  268 (311)
T ss_dssp             SSEEEEEETTS-----CEEEEETTTCCEEEE--CBCTTS-SSCSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETT
T ss_pred             ccccccccccc-----ccccccccccccccc--cccccc-ccccccccccccccCCCCCEEEEEeCC----CeEEEEECC
Confidence            56667766443     377888877653332  221111 111222  2222333333455567755    357788876


Q ss_pred             CC
Q 010551          332 PR  333 (507)
Q Consensus       332 ~~  333 (507)
                      +.
T Consensus       269 t~  270 (311)
T d1nr0a1         269 TL  270 (311)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.46  E-value=0.27  Score=43.71  Aligned_cols=193  Identities=12%  Similarity=0.110  Sum_probs=94.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.+............                .....++.+  ++..++.+|..... 
T Consensus        69 ~g~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s~d~~~l~~~~~~~~~-  126 (311)
T d1nr0a1          69 SGYYCASGDVH-----GNVRIWDTTQTTHILKTTIPVF----------------SGPVKDISWDSESKRIAAVGEGRER-  126 (311)
T ss_dssp             TSSEEEEEETT-----SEEEEEESSSTTCCEEEEEECS----------------SSCEEEEEECTTSCEEEEEECCSSC-
T ss_pred             CCCeEeccccC-----ceEeeeeeeccccccccccccc----------------cCccccccccccccccccccccccc-
Confidence            55666666643     3588899888765432222100                011122222  45566666643322 


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~  191 (507)
                         .+.+++..+++-..     .+........++.+   +..+++.|+.++      .+.+||..+.+-.....  .  .
T Consensus       127 ---~~~v~~~~~~~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d~------~i~i~d~~~~~~~~~~~--~--~  188 (311)
T d1nr0a1         127 ---FGHVFLFDTGTSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDDN------TVAIFEGPPFKFKSTFG--E--H  188 (311)
T ss_dssp             ---SEEEEETTTCCBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETTS------CEEEEETTTBEEEEEEC--C--C
T ss_pred             ---cccccccccccccc-----cccccccccccccccccceeeeccccccc------ccccccccccccccccc--c--c
Confidence               26677777664221     11111111223333   234666676543      48889988765443321  1  0


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCcc----EEEEE--CCeEEEEeccCCC
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH----AGITI--DENWYIVGGGDNN  265 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~----~~~~~--~~~l~v~GG~~~~  265 (507)
                      ...-.++....++.+++.|+.+     +.+.+||+.++.-...-  ........+|    ..+.+  +++.++.||.++ 
T Consensus       189 ~~~i~~v~~~p~~~~l~~~~~d-----~~v~~~d~~~~~~~~~~--~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-  260 (311)
T d1nr0a1         189 TKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVF--EDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-  260 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEC--BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-
T ss_pred             cccccccccCcccccccccccc-----ccccccccccccccccc--cccccccccccccccccccCCCCCEEEEEeCCC-
Confidence            1111233333344466666654     35888998776543321  1111111111    22233  456777776443 


Q ss_pred             CCcceEEEEECCCCcE
Q 010551          266 NGCQETIVLNMTKLAW  281 (507)
Q Consensus       266 ~~~~~~~~~d~~~~~W  281 (507)
                          .+.++|+.++.-
T Consensus       261 ----~v~iwd~~t~~~  272 (311)
T d1nr0a1         261 ----TIKIWNVATLKV  272 (311)
T ss_dssp             ----EEEEEETTTTEE
T ss_pred             ----eEEEEECCCCcE
Confidence                478899888763

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.33  Score=43.47  Aligned_cols=186  Identities=17%  Similarity=0.064  Sum_probs=90.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      ++..++.|+.+     ..+.+||+...+..........                ........+  ++.+++.|+..    
T Consensus       108 dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~~~d----  162 (337)
T d1gxra_         108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSS----------------APACYALAISPDSKVCFSCCSD----  162 (337)
T ss_dssp             TSSEEEEEESS-----SEEEEEECCCC--EEEEEEECS----------------SSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEeecc-----cccccccccccccccccccccc----------------cccccccccccccccccccccc----
Confidence            45555666543     3588888877665544332210                111112222  44455555432    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCC
Q 010551          115 DSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~  192 (507)
                        ..+..++..++.-.....   ...  ....++.+  ++..++.|+.+      +.+.+||+.+.+-.....   .  .
T Consensus       163 --~~i~~~~~~~~~~~~~~~---~~~--~~v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~---~--~  224 (337)
T d1gxra_         163 --GNIAVWDLHNQTLVRQFQ---GHT--DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---F--T  224 (337)
T ss_dssp             --SCEEEEETTTTEEEEEEC---CCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---C--S
T ss_pred             --cccccccccccccccccc---ccc--ccccccccccccccccccccc------ccccccccccceeecccc---c--c
Confidence              238889988886444321   111  11222222  44566666654      358889988765322211   1  1


Q ss_pred             CCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceE
Q 010551          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       193 r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~  271 (507)
                      ..-.+++...++.+++.|+.+     ..+.+||+.+..-.....  .   .-.-.++... +++.++.|+.++     .+
T Consensus       225 ~~i~~l~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~--~---~~~i~~v~~s~~g~~l~s~s~Dg-----~i  289 (337)
T d1gxra_         225 SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLHL--H---ESCVLSLKFAYCGKWFVSTGKDN-----LL  289 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEECC--C---SSCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred             cceEEEEEcccccccceeccc-----cccccccccccccccccc--c---ccccceEEECCCCCEEEEEeCCC-----eE
Confidence            111223333344466666654     358889988766443211  0   0011122222 456677766432     47


Q ss_pred             EEEECCCCc
Q 010551          272 IVLNMTKLA  280 (507)
Q Consensus       272 ~~~d~~~~~  280 (507)
                      .+||..+..
T Consensus       290 ~iwd~~~~~  298 (337)
T d1gxra_         290 NAWRTPYGA  298 (337)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCC
Confidence            788877654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.25  E-value=0.41  Score=43.54  Aligned_cols=153  Identities=11%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.++++|+.+     ..+.+||..++++..+......             -.+.  .+++.. ++++++.||.+.    
T Consensus        18 dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH-------------~~~V--~~l~fsp~~~~l~s~s~D~----   73 (371)
T d1k8kc_          18 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEH-------------NGQV--TGVDWAPDSNRIVTCGTDR----   73 (371)
T ss_dssp             TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECC-------------SSCE--EEEEEETTTTEEEEEETTS----
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCC-------------CCCE--EEEEECCCCCEEEEEECCC----
Confidence            55666777633     3588999999988777654210             0011  122222 455556665432    


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                        .+.+||+.++.|.....   .........++.+  ++..++.|+.+.    .-.++.++.....+.......   ..+
T Consensus        74 --~i~vWd~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~---~~~  141 (371)
T d1k8kc_          74 --NAYVWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKK---PIR  141 (371)
T ss_dssp             --CEEEEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECT---TCC
T ss_pred             --eEEEEeecccccccccc---cccccccccccccccccccceeecccC----cceeeeeeccccccccccccc---ccc
Confidence              38889999999987653   2222223333343  455566665442    223555565555555443211   112


Q ss_pred             CCce-EEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          194 YDHS-AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       194 ~~~~-~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ..-. +....++.+++.|+.++     .+.+||+....
T Consensus       142 ~~v~~v~~~p~~~~l~s~s~D~-----~v~v~~~~~~~  174 (371)
T d1k8kc_         142 STVLSLDWHPNSVLLAAGSCDF-----KCRIFSAYIKE  174 (371)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS-----CEEEEECCCTT
T ss_pred             cccccccccccccceeccccCc-----EEEEEeeccCc
Confidence            2212 22234555667776543     46677765443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.23  E-value=0.078  Score=47.45  Aligned_cols=56  Identities=13%  Similarity=0.097  Sum_probs=35.3

Q ss_pred             CCCCeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCce
Q 010551            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAW   65 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W   65 (507)
                      |..+.++|+.+++=....   ..|.....+++++.  +..||+.+..+     +.+..||+.++.=
T Consensus        17 ~~~v~v~D~~t~~~~~t~---~~~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~   74 (346)
T d1jmxb_          17 PNNLHVVDVASDTVYKSC---VMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN   74 (346)
T ss_dssp             TTEEEEEETTTTEEEEEE---ECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred             CCEEEEEECCCCCEEEEE---EcCCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCee
Confidence            456778999998654432   23444444555554  45678877533     4689999987654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.75  E-value=0.59  Score=42.40  Aligned_cols=233  Identities=12%  Similarity=0.071  Sum_probs=110.2

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+-+||...+++..+........+  =.+++.. ++.+++.||.+     ..+.++|+.++.|........         
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~--V~~l~fsp~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~---------   93 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQ--VTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILR---------   93 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSC--EEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCC---------
T ss_pred             EEEEEECCCCCEEEEEEecCCCCC--EEEEEECCCCCEEEEEECC-----CeEEEEeeccccccccccccc---------
Confidence            356778888888776532111111  1122222 45555666643     358999999999987654321         


Q ss_pred             CCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEc
Q 010551           83 GLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~G  158 (507)
                             .......+.+  +++.++.|+.+.    .-.++.++.....+.....   ....+....++.+  ++.+++.|
T Consensus        94 -------~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          94 -------INRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHI---KKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             -------CSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEE---CTTCCSCEEEEEECTTSSEEEEE
T ss_pred             -------ccccccccccccccccceeecccC----cceeeeeeccccccccccc---ccccccccccccccccccceecc
Confidence                   1112223333  455555555332    3346667766666654432   1112222233333  45666777


Q ss_pred             CCCCCCCccCcEEEEECCCCcEEEec---------cCCCCC-----CCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEE
Q 010551          159 GEDRSRKLLNDVHFLDLETMTWDAVE---------VTQTPP-----APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       159 G~~~~~~~~n~~~~~d~~t~~W~~~~---------~~~~~p-----~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~  224 (507)
                      +.+.      .+..||+.........         ..+...     ..-.-++++...++..++.|+.+     ..+.++
T Consensus       160 s~D~------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----~~i~iw  228 (371)
T d1k8kc_         160 SCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLA  228 (371)
T ss_dssp             ETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEE
T ss_pred             ccCc------EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----CcceEE
Confidence            7653      3667776543321110         000000     00111222223344456666643     358888


Q ss_pred             ECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCcEEEec
Q 010551          225 DLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       225 d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~  285 (507)
                      |+.+..-...-.....|    -.+++.. ++.+++ +|.++   ...++.++.....|....
T Consensus       229 d~~~~~~~~~~~~~~~~----v~s~~fs~d~~~la-~g~d~---~~~~~~~~~~~~~~~~~~  282 (371)
T d1k8kc_         229 DADKKMAVATLASETLP----LLAVTFITESSLVA-AGHDC---FPVLFTYDSAAGKLSFGG  282 (371)
T ss_dssp             EGGGTTEEEEEECSSCC----EEEEEEEETTEEEE-EETTS---SCEEEEEETTTTEEEECC
T ss_pred             eeecccceeeeeccccc----ceeeeecCCCCEEE-EEcCC---ceEEEEeeCCCceEEEee
Confidence            87665422211001111    1223333 455554 45432   235777887777776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.64  E-value=0.19  Score=43.96  Aligned_cols=110  Identities=23%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       151 ~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ++.+++.|+.+      +.+..||+.+.....+.....   ...-.+++...++.+++.|+.+     ..+++||+.++.
T Consensus       147 ~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~  212 (299)
T d1nr0a2         147 DKQFVAVGGQD------SKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNF  212 (299)
T ss_dssp             TSCEEEEEETT------SEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTT
T ss_pred             ccccccccccc------ccccccccccccccccccccc---cccccccccccccccccccccc-----cccccccccccc
Confidence            45677777754      358889988877655433211   1111223333344456666543     258899988766


Q ss_pred             EEecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCcE
Q 010551          231 WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       231 W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  281 (507)
                      .....  .........-..+.+  ++.+++.||.++     .+.+||+.+...
T Consensus       213 ~~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~  258 (299)
T d1nr0a2         213 ELAHT--NSWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSD  258 (299)
T ss_dssp             EESCC--CCCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTS
T ss_pred             ccccc--ccccccccccccccccccccceEEEcCCC-----EEEEEECCCCCc
Confidence            54421  111111122222223  456777777543     478888877653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.65  Score=40.57  Aligned_cols=158  Identities=14%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEE
Q 010551           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus        95 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d  174 (507)
                      .....++..++.|+.+.      .+.+||+.+++-.....   .  ......+...++.+++.|+.+      +.+.+||
T Consensus       181 ~~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~---~--~~~~v~~~~~~~~~l~s~s~d------~~i~iwd  243 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT---G--HQSLTSGMELKDNILVSGNAD------STVKIWD  243 (342)
T ss_dssp             EEEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC---C--CCSCEEEEEEETTEEEEEETT------SCEEEEE
T ss_pred             ccccCCCCEEEEEeCCC------eEEEeecccceeeeEec---c--cccceeEEecCCCEEEEEcCC------CEEEEEe
Confidence            34445666666766543      38889988876443321   1  111123334445556666654      3589999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCC-ccEEEEEC
Q 010551          175 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRA-GHAGITID  253 (507)
Q Consensus       175 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~~  253 (507)
                      +.+.+-...-.  ..........+...+++ +++.|+.+     ..+.+||+.+++....-.....+.... -.+++...
T Consensus       244 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         244 IKTGQCLQTLQ--GPNKHQSAVTCLQFNKN-FVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             TTTCCEEEEEC--STTSCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             ccccccccccc--ccceeeeceeecccCCC-eeEEEcCC-----CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence            88766443321  11112222233344455 66677654     358999999887543211111111111 11222234


Q ss_pred             Ce-EEEEeccCCCCCcceEEEEECCC
Q 010551          254 EN-WYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       254 ~~-l~v~GG~~~~~~~~~~~~~d~~~  278 (507)
                      +. +++.|+.++ .....++++|+..
T Consensus       316 ~~~~la~g~~dG-t~~~~l~~~Df~~  340 (342)
T d2ovrb2         316 TKLVCAVGSRNG-TEETKLLVLDFDV  340 (342)
T ss_dssp             SEEEEEEECSSS-SSCCEEEEEECCC
T ss_pred             CCCEEEEEeCCC-CCeeEEEEEeCCC
Confidence            44 445554333 2334577777653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.45  E-value=0.17  Score=45.46  Aligned_cols=147  Identities=17%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ..+|++|.......+++..     .+..+....-+++.++++|...+   ..++++|..++.-..+....          
T Consensus        24 g~v~v~d~~~~~~~~~~~~-----~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~----------   85 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKVPEP-----LRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENL----------   85 (360)
T ss_dssp             TEEEEECTTSSBEEECSCC-----SCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCC----------
T ss_pred             CeEEEEECCCCcEEEccCC-----CCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCC----------
Confidence            4579999999888877532     23333222236666665553322   24889999988766544221          


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~  162 (507)
                             .........-+++.+++++..      ..++.++..++.......   .+.......+..-+++.+++++.+.
T Consensus        86 -------~~v~~~~~spdg~~l~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          86 -------GNVFAMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             -------CSEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             -------ceEEeeeecccccccceeccc------cccccccccccceeeeee---cccccccchhhccceeeeeeecccc
Confidence                   111111122245555555432      348889998888665542   2222222222223455555544322


Q ss_pred             ----CCCccCcEEEEECCCCcEEEe
Q 010551          163 ----SRKLLNDVHFLDLETMTWDAV  183 (507)
Q Consensus       163 ----~~~~~n~~~~~d~~t~~W~~~  183 (507)
                          .......++.+|+.+..=..+
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~~~~~~  174 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGRKIFAA  174 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred             ccceeeccccceeeeccccCceeee
Confidence                112234578889887654433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.32  E-value=1.4  Score=42.78  Aligned_cols=133  Identities=16%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEec
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG  108 (507)
                      .+-+++++.||+...      .+.++.+|..|++  |+.-+.....        ............+.+..++++|+...
T Consensus        71 stPiv~~g~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~v~~~t~  136 (573)
T d1kb0a2          71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRS--------TGFKGCCDVVNRGVALWKGKVYVGAW  136 (573)
T ss_dssp             CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGG--------GGGGSSSCSCCCCCEEETTEEEEECT
T ss_pred             ECCEEECCEEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcc--------cccccccccccccceEECCcEEEEec
Confidence            444678999998764      3569999999885  8753322110        00011122334456777888887632


Q ss_pred             cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEec
Q 010551          109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  184 (507)
Q Consensus       109 ~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~~  184 (507)
                             ...++.+|..|++  |+.....+.........+.+++++.+|+ |+..........+..||..|++  |+--.
T Consensus       137 -------~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         137 -------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             -------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             -------ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEE-eeccccccccceEEEEecCCccceeeeee
Confidence                   2348899999986  7654321111111122334566777764 5544333345679999999986  87654


Q ss_pred             c
Q 010551          185 V  185 (507)
Q Consensus       185 ~  185 (507)
                      .
T Consensus       209 ~  209 (573)
T d1kb0a2         209 V  209 (573)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.21  E-value=1.5  Score=42.44  Aligned_cols=133  Identities=17%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEe
Q 010551           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        30 ~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~G  107 (507)
                      ..+-+++++.||+..+      .+.++.+|..|++  |+..+.....        ..............+..+++||+..
T Consensus        59 ~stPiv~~g~vyv~t~------~~~v~AlDa~tG~~lW~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~  124 (560)
T d1kv9a2          59 EATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKV--------KARTSCCDAVNRGVALWGDKVYVGT  124 (560)
T ss_dssp             CCCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGG--------GGGGCTTCSCCCCCEEEBTEEEEEC
T ss_pred             EeCCEEECCEEEEECC------CCeEEEEeCCCCCEEEEECCCCCcc--------ccccccccccccCcceeCCeEEEEe
Confidence            3556788999998764      3579999999985  8753221110        0001112233445667788888864


Q ss_pred             ccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCc--EEEe
Q 010551          108 GHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  183 (507)
Q Consensus       108 G~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~--W~~~  183 (507)
                      .       ...++.+|..|++  |+.... +..+......+..++++.+|+ |+..........+..||..|++  |+--
T Consensus       125 ~-------~g~l~Alda~tG~~~w~~~~~-~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         125 L-------DGRLIALDAKTGKAIWSQQTT-DPAKPYSITGAPRVVKGKVII-GNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             T-------TSEEEEEETTTCCEEEEEECS-CTTSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             C-------CCEEEEEECCCCcEEeccCcc-CcccceeeeeeeeeecCcccc-cccceeccccceEEEEECCCceEEeeee
Confidence            3       2348999999885  765431 112222223344566777665 4433222334579999999885  7765


Q ss_pred             cc
Q 010551          184 EV  185 (507)
Q Consensus       184 ~~  185 (507)
                      ..
T Consensus       196 t~  197 (560)
T d1kv9a2         196 TV  197 (560)
T ss_dssp             SS
T ss_pred             ec
Confidence            43

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=1.1  Score=40.18  Aligned_cols=149  Identities=15%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++++++.|+.+.      .+.++|..++.......   ..  .....+...  ++..++.|+.+      ..+..+|..+
T Consensus       132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~---~h--~~~v~~~~~~~~~~~~~~~~~~------~~i~~~d~~~  194 (388)
T d1erja_         132 DGKFLATGAEDR------LIRIWDIENRKIVMILQ---GH--EQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRT  194 (388)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CC--SSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCcceeccccc------ccccccccccccccccc---cc--cccccccccccccccccccccc------eeeeeeeccc
Confidence            455666676533      38889998887655431   11  111122222  33445555533      3588888877


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccC-CCCCC-CCCccEEEEE--
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK-GDLVT-GRAGHAGITI--  252 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~-~~~p~-~r~~~~~~~~--  252 (507)
                      ..-......     .....+++.. .++.+++.|+.+     +.+.+||..+......... ..... ....-..+.+  
T Consensus       195 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  264 (388)
T d1erja_         195 GQCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  264 (388)
T ss_dssp             TEEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             ccccccccc-----ccccccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence            665444321     1111122222 244466666654     3588899888765442111 11111 1111122222  


Q ss_pred             CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          253 DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       253 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ++..++.|+.++     .+.+||+.+..
T Consensus       265 ~~~~l~s~~~d~-----~i~iwd~~~~~  287 (388)
T d1erja_         265 DGQSVVSGSLDR-----SVKLWNLQNAN  287 (388)
T ss_dssp             TSSEEEEEETTS-----EEEEEEC----
T ss_pred             CCCEEEEEECCC-----cEEEEeccCCc
Confidence            346666666433     46677765543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.02  E-value=1.1  Score=39.88  Aligned_cols=253  Identities=11%  Similarity=0.024  Sum_probs=121.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE-CCEEEEEeccCCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  115 (507)
                      ++.||+..-     ....++.+|+.++.........                 ...-++++.. +++||+..-...  ..
T Consensus        50 ~G~Ly~~D~-----~~g~I~ri~p~g~~~~~~~~~~-----------------~~~p~gla~~~dG~l~va~~~~~--~~  105 (319)
T d2dg1a1          50 QGQLFLLDV-----FEGNIFKINPETKEIKRPFVSH-----------------KANPAAIKIHKDGRLFVCYLGDF--KS  105 (319)
T ss_dssp             TSCEEEEET-----TTCEEEEECTTTCCEEEEEECS-----------------SSSEEEEEECTTSCEEEEECTTS--SS
T ss_pred             CCCEEEEEC-----CCCEEEEEECCCCeEEEEEeCC-----------------CCCeeEEEECCCCCEEEEecCCC--cc
Confidence            456888742     2346899999887654433221                 1112333333 578888642211  11


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ...+..++..+......... ..+..+.+-.++.-++.+|+-.-..........++++++.......+...  ...+   
T Consensus       106 ~~~i~~~~~~~~~~~~~~~~-~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~~p---  179 (319)
T d2dg1a1         106 TGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVA---  179 (319)
T ss_dssp             CCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSE---
T ss_pred             ceeEEEEcCCCceeeeeccC-CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec--ccee---
Confidence            34588888888876655421 11122222222223567776432221222355699999888777665431  1111   


Q ss_pred             ceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCc---EEeccc-CCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcc
Q 010551          196 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEI-KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       196 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~-~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~  269 (507)
                      .+++.- +++.||+.--     ..+.+++|++....   ...... ............+++- +++|||..-.     ..
T Consensus       180 nGia~s~dg~~lyvad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----~g  249 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QG  249 (319)
T ss_dssp             EEEEECTTSSEEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TT
T ss_pred             eeeeeccccceEEEecc-----cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----CC
Confidence            123332 3456887532     34579999876431   111000 0001111111234443 5678887421     23


Q ss_pred             eEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc-CCCCcCceEEEEECC
Q 010551          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG-YNGKYNNEVFVMRLK  331 (507)
Q Consensus       270 ~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG-~~~~~~~~~~~~~~~  331 (507)
                      .+.+||+....-..| .+|...+..... ..+.+..++.+.+|+.-. ........+|..+..
T Consensus       250 ~V~~~~p~G~~l~~i-~~P~~~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         250 RVLVFNKRGYPIGQI-LIPGRDEGHMLR-STHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             EEEEECTTSCEEEEE-ECTTGGGTCSCB-CCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             EEEEECCCCcEEEEE-eCCCcCCCcCce-eeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence            688999876555555 344332211112 223334444556666432 111223456666653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=1  Score=39.16  Aligned_cols=194  Identities=14%  Similarity=0.187  Sum_probs=104.2

Q ss_pred             EECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551           98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus        98 ~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ......++.|+..      ..+..+|+....-....     ........+...++..++.|+.++      .+.+||+.+
T Consensus       144 ~~~~~~~~~~~~d------~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~dg------~i~~~d~~~  206 (342)
T d2ovrb2         144 QYDGRRVVSGAYD------FMVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVET  206 (342)
T ss_dssp             EECSSCEEEEETT------SCEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEETTT
T ss_pred             ccccceeeeecCC------CeEEEeecccceeeEEE-----cCcccccccccCCCCEEEEEeCCC------eEEEeeccc
Confidence            3344455555433      23677777665433221     111122334445666677777653      488899887


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  257 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  257 (507)
                      .+-......     ......++...++ +++.|+.+     +.+.+||+....-....  ...............++.++
T Consensus       207 ~~~~~~~~~-----~~~~v~~~~~~~~-~l~s~s~d-----~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  273 (342)
T d2ovrb2         207 GNCIHTLTG-----HQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL--QGPNKHQSAVTCLQFNKNFV  273 (342)
T ss_dssp             CCEEEEECC-----CCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE--CSTTSCSSCEEEEEECSSEE
T ss_pred             ceeeeEecc-----cccceeEEecCCC-EEEEEcCC-----CEEEEEecccccccccc--cccceeeeceeecccCCCee
Confidence            764333211     1112233344566 56666654     35889998876644321  11111222333445567777


Q ss_pred             EEeccCCCCCcceEEEEECCCCcEE-EeccCCCCCCCCCCCCc--eEEEEEcCceEEEEEccCCCCcCceEEEEECCC
Q 010551          258 IVGGGDNNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLS--VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       258 v~GG~~~~~~~~~~~~~d~~~~~W~-~v~~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  332 (507)
                      +.|+.++     .+.++|+.++... .+......      ++.  ...+...++..+++.|+.+|.....++++|+..
T Consensus       274 ~s~s~Dg-----~i~iwd~~tg~~i~~~~~~~~~------~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         274 ITSSDDG-----TVKLWDLKTGEFIRNLVTLESG------GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEETTS-----EEEEEETTTCCEEEEEEECTTG------GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEcCCC-----EEEEEECCCCCEEEEEecccCC------CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            8777443     4788999887643 23222111      121  223344555678888988887677788888753

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.79  Score=37.50  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=80.7

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEE-ECCEEEEEeccC
Q 010551           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHY  110 (507)
Q Consensus        32 ~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~  110 (507)
                      +++.+++.+|+|-|       .-+|.++.....+........           ....+.....+.+. .++.+|++-|..
T Consensus        13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~-----------w~~lp~~IDAAf~~~~~~~~yffkg~~   74 (192)
T d1pexa_          13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSF-----------WPELPNRIDAAYEHPSHDLIFIFRGRK   74 (192)
T ss_dssp             EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHH-----------CTTSCSSCCEEEEETTTTEEEEEETTE
T ss_pred             EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhh-----------CcCCCCcccceEEEcCCCEEEEEcCCE
Confidence            45567999999987       235555544333322211110           11122223333322 268889887743


Q ss_pred             CCCCCcceEEEEECCCCcE---EEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEec
Q 010551          111 KKSSDSMIVRFIDLETNLC---GVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  184 (507)
Q Consensus       111 ~~~~~~~~~~~yd~~t~~W---~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~  184 (507)
                              +|+|+..+...   +.+...+ .|.+.....++..   ++++|+|-|.        ..++||..+..-..-.
T Consensus        75 --------~w~y~~~~~~~gyPk~i~~~~-~~~~~~~idaA~~~~~~~~~y~Fkg~--------~y~~y~~~~~~~~~~~  137 (192)
T d1pexa_          75 --------FWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDY  137 (192)
T ss_dssp             --------EEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSC
T ss_pred             --------EEEEcCCcccCCCCeEeeeee-cCCCCCCccEEEEECCCCEEEEEeCC--------EEEEEcCccccccCCC
Confidence                    78887544332   1222111 2222222233333   4689999763        4688887665421111


Q ss_pred             cC------CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          185 VT------QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       185 ~~------~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +.      ...| ... .++. ..++++|+|-|       +..++||..+.+-..
T Consensus       138 pk~I~~~w~gvp-~~v-dAa~-~~~g~~YfF~g-------~~y~r~~~~~~~v~~  182 (192)
T d1pexa_         138 PRLIEEDFPGIG-DKV-DAVY-EKNGYIYFFNG-------PIQFEYSIWSNRIVR  182 (192)
T ss_dssp             CCBHHHHSTTSC-SCC-SEEE-EETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             cEEHhhcCCCCC-CCc-eEEE-EeCCEEEEEEC-------CEEEEEeCCcCeEcc
Confidence            10      1122 222 2333 45778999987       478899988776554

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.54  Score=38.66  Aligned_cols=108  Identities=12%  Similarity=0.075  Sum_probs=59.1

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCc---EEEeec-CCCCCCCCcCcEEE-EE--CCEEEEEcCCCCCCCccCcEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNL---CGVMET-SGKVPVTRGGHSVT-LV--GSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~-~g~~p~~r~~~~~~-~~--~~~iy~~GG~~~~~~~~n~~~~  172 (507)
                      ++++|+|-|..        +|+|+..+..   -..+.. -| +|......-++ ..  ++++|+|-|.        ..++
T Consensus        67 ~~~~yfFkG~~--------y~~y~~~~~~~g~p~~i~~~~G-~p~~~~~idaa~~~~~~~~~Y~FkG~--------~y~r  129 (195)
T d1su3a2          67 RDEVRFFKGNK--------YWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVAN--------KYWR  129 (195)
T ss_dssp             GTEEEEEETTE--------EEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEETT--------EEEE
T ss_pred             CcEEEEECCcE--------EEEEcCCccccCCCccchhhcC-CCCCccccccccccCCCCeEEEEeCC--------EEEE
Confidence            58899997743        8888743221   111111 02 23222223233 33  4699999884        4789


Q ss_pred             EECCCCcEEE-----eccC-CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          173 LDLETMTWDA-----VEVT-QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       173 ~d~~t~~W~~-----~~~~-~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      ||..+..-..     +... ..+|. ... ++. ..++++|+|-|       +..|+||..+.+...+
T Consensus       130 y~~~~~~vd~gyPk~I~~~w~Gvp~-~iD-AAf-~~~g~~YfFkg-------~~y~r~~~~~~~v~~~  187 (195)
T d1su3a2         130 YDEYKRSMDPGYPKMIAHDFPGIGH-KVD-AVF-MKDGFFYFFHG-------TRQYKFDPKTKRILTL  187 (195)
T ss_dssp             EETTTTEECSSCSEEHHHHSTTSCS-CCS-EEE-EETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred             EeccCccccCCcccccccccCCCCC-Ccc-EEE-EECCeEEEEEC-------CEEEEEeCCcCEEEec
Confidence            9987754211     1100 12232 222 333 34778999988       4789999887765543

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=94.58  E-value=1.2  Score=38.21  Aligned_cols=186  Identities=16%  Similarity=0.203  Sum_probs=99.2

Q ss_pred             CCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceE--EEE-----ccCCceeeeccccccCCCccccC
Q 010551           10 LPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQ--VFD-----LRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus        10 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~--~~d-----~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      +...-|.... .|..|.-..-|+.+++++.-|.+|=.+++.....+-  .|.     |...--+.++..-          
T Consensus       263 f~~spw~~t~-l~~i~~vte~hsfa~idn~~~avgyhn~dv~pr~lg~lyf~daf~sp~~fvrr~i~~~y----------  331 (516)
T d1v0ea1         263 FHKSPWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEY----------  331 (516)
T ss_dssp             STTSCCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGG----------
T ss_pred             ccCCCceecc-ccccceeeeeeeEEEEcCCceEEEeccCCcCcceeeEEEcccccCCccceeeeccchhh----------
Confidence            4455676554 456788888899999988877777322222222222  221     1111223333221          


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCC
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~  162 (507)
                           .+.....++-..++-||+.---.-....-+++.+-.-....|+.+...  -..-....-.+.+++.||+||....
T Consensus       332 -----~~nasepcvk~y~gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lrfp--~nvhhsnlpfakvgd~l~ifgsera  404 (516)
T d1v0ea1         332 -----EPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFP--HNVHHTTLPFAKVGDDLIMFGSERA  404 (516)
T ss_dssp             -----CTTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECT--TCCCSSCCCEEEETTEEEEEEECSS
T ss_pred             -----cCCCCCchhhhcCCEEEEEeccccCCCCCccceeccccccChhhccCC--ccccccCCChhhcCCeEEEeccccc
Confidence                 112334455566899988754333333234455444455579998631  1122233456789999999986321


Q ss_pred             ---------CCC----ccCc-EEEEE-----CCCCcEEEecc---CCCCCCCCCCceEEEEcCCEE-EEEcCCC
Q 010551          163 ---------SRK----LLND-VHFLD-----LETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS  213 (507)
Q Consensus       163 ---------~~~----~~n~-~~~~d-----~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~~  213 (507)
                               +..    +... +-+.|     ++.-.|-.+..   .|.....-.+.+.+++.++.| |||||-+
T Consensus       405 ~~ewe~gapd~ry~~syprtf~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged  478 (516)
T d1v0ea1         405 ENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED  478 (516)
T ss_dssp             TTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECC
T ss_pred             ccccccCCCccccccCCCceEEEEEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCcc
Confidence                     111    1111 12233     34456766643   244444555666677778776 7899864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.40  E-value=1.5  Score=38.45  Aligned_cols=185  Identities=11%  Similarity=-0.024  Sum_probs=93.0

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      .+|.+|+.++.-.....    |. +.+..+..-++.|++...       +.++.||+.+++++.+.....          
T Consensus        41 ~I~r~d~~~g~~~~~~~----~~-~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~----------   98 (295)
T d2ghsa1          41 ELHELHLASGRKTVHAL----PF-MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELES----------   98 (295)
T ss_dssp             EEEEEETTTTEEEEEEC----SS-CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSST----------
T ss_pred             EEEEEECCCCeEEEEEC----CC-CcEEEEEecCCCEEEEEe-------CccEEeecccceeeEEeeeec----------
Confidence            35777887776555542    21 112222223677776532       359999999999988764321          


Q ss_pred             CcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCC
Q 010551           84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDR  162 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~  162 (507)
                        ..+.-|.....+.-++++|+---.....  ...-..|....++.+.+...  +  ...+-.+... ++.+|+..-.  
T Consensus        99 --~~~~~~~nd~~vd~~G~iw~~~~~~~~~--~~~g~l~~~~~g~~~~~~~~--~--~~~Ng~~~s~d~~~l~~~dt~--  168 (295)
T d2ghsa1          99 --DLPGNRSNDGRMHPSGALWIGTMGRKAE--TGAGSIYHVAKGKVTKLFAD--I--SIPNSICFSPDGTTGYFVDTK--  168 (295)
T ss_dssp             --TCTTEEEEEEEECTTSCEEEEEEETTCC--TTCEEEEEEETTEEEEEEEE--E--SSEEEEEECTTSCEEEEEETT--
T ss_pred             --CCCcccceeeEECCCCCEEEEecccccc--ccceeEeeecCCcEEEEeec--c--CCcceeeecCCCceEEEeecc--
Confidence              2222344444444467777654332222  22344455556666555421  1  1111111111 3356664332  


Q ss_pred             CCCccCcEEEEECCCC-------cEEEeccCCCCCCCCCCceEEEEcCCEEEEE--cCCCCCCCCCcEEEEECCCCcEEe
Q 010551          163 SRKLLNDVHFLDLETM-------TWDAVEVTQTPPAPRYDHSAALHANRYLIVF--GGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       163 ~~~~~n~~~~~d~~t~-------~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~--GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                          .+.+++|+.+..       ....+...+.   .-.-.++++-.++.|+|.  +|       ..|.+||+.......
T Consensus       169 ----~~~I~~~~~d~~~~~~~~~~~~~~~~~~~---~g~pdG~~vD~~GnlWva~~~~-------g~V~~~dp~G~~~~~  234 (295)
T d2ghsa1         169 ----VNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGE-------GAVDRYDTDGNHIAR  234 (295)
T ss_dssp             ----TCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETT-------TEEEEECTTCCEEEE
T ss_pred             ----cceeeEeeecccccccccceEEEeccCcc---cccccceEEcCCCCEEeeeeCC-------CceEEecCCCcEeeE
Confidence                456888876422       1222221111   111234444445668875  33       269999998777766


Q ss_pred             c
Q 010551          234 P  234 (507)
Q Consensus       234 ~  234 (507)
                      +
T Consensus       235 i  235 (295)
T d2ghsa1         235 Y  235 (295)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.34  E-value=0.87  Score=40.53  Aligned_cols=171  Identities=10%  Similarity=-0.027  Sum_probs=84.5

Q ss_pred             ceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEecc
Q 010551           31 HAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH  109 (507)
Q Consensus        31 ~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~  109 (507)
                      +.+++. ++.||+..-.. ......+..+|..+..........              ....+..-.++.-++.+|+-.-.
T Consensus        85 ~gla~~~dG~l~va~~~~-~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~~~~nd~~~d~~G~l~vtd~~  149 (319)
T d2dg1a1          85 AAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFR  149 (319)
T ss_dssp             EEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECC
T ss_pred             eEEEECCCCCEEEEecCC-CccceeEEEEcCCCceeeeeccCC--------------CcccCCcceeEEeccceeecccc
Confidence            444443 66888864211 122345778888777665543221              11123222333336777775322


Q ss_pred             CCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEE--ECCEEEEEcCCCCCCCccCcEEEEECCCCc---E---E
Q 010551          110 YKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMT---W---D  181 (507)
Q Consensus       110 ~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~---W---~  181 (507)
                      .........++++++.....+.+......|.     .++.  -++.||+.--      ..+.+++|++....   .   .
T Consensus       150 ~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pn-----Gia~s~dg~~lyvad~------~~~~I~~~d~~~~g~~~~~~~~  218 (319)
T d2dg1a1         150 GYSTNPLGGVYYVSPDFRTVTPIIQNISVAN-----GIALSTDEKVLWVTET------TANRLHRIALEDDGVTIQPFGA  218 (319)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEEEEEEESSEE-----EEEECTTSSEEEEEEG------GGTEEEEEEECTTSSSEEEEEE
T ss_pred             cccccCcceeEEEecccceeEEEeeccceee-----eeeeccccceEEEecc------cCCceEEEEEcCCCceeccccc
Confidence            2222235579999998887776542111111     1222  1346777533      24679999875431   1   1


Q ss_pred             EeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEec
Q 010551          182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       182 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      ....  .......-..+++-.++.|||..-.     .+.|.+||+.-.....+
T Consensus       219 ~~~~--~~~~~~~PdGl~vD~~G~l~Va~~~-----~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         219 TIPY--YFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             EEEE--ECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred             eeee--ccCCccceeeeeEcCCCCEEEEEcC-----CCEEEEECCCCcEEEEE
Confidence            1110  0111111124555456668886321     14799999865444444

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.99  Score=36.95  Aligned_cols=149  Identities=11%  Similarity=0.072  Sum_probs=79.8

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEE----eec-CCCCCCCCcCcEEEE-E--CCEEEEEcCCCCCCCc
Q 010551           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV----MET-SGKVPVTRGGHSVTL-V--GSRLIIFGGEDRSRKL  166 (507)
Q Consensus        95 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~----~~~-~g~~p~~r~~~~~~~-~--~~~iy~~GG~~~~~~~  166 (507)
                      +++.+++.+|+|-|..        .|+|+........    +.. -..+|..   .-++. .  ++++|+|-|.      
T Consensus        11 Av~~~~G~~y~Fkg~~--------ywr~~~~~~~~~~~P~~I~~~w~glp~~---IDAAf~~~~~~k~yfFkg~------   73 (195)
T d1itva_          11 AIAEIGNQLYLFKDGK--------YWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSGR------   73 (195)
T ss_dssp             EEEEETTEEEEEETTE--------EEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEETT------
T ss_pred             eEEEeCCEEEEEECCE--------EEEEeCCCCCcCCCcEEeeeecCCCCCC---ccEEEEECCCCEEEEEecC------
Confidence            4567899999997642        7777654333211    110 0123332   22232 2  4689998764      


Q ss_pred             cCcEEEEECCCCcE-EEeccCCCCCCCCC-CceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe--cccC----C
Q 010551          167 LNDVHFLDLETMTW-DAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK----G  238 (507)
Q Consensus       167 ~n~~~~~d~~t~~W-~~~~~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~----~  238 (507)
                        .+++|+-....- ..+...| +|.... ..++....++++|+|=|       +..|+||..++.-..  +...    .
T Consensus        74 --~~~~y~~~~~~~Pk~i~~~g-~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~  143 (195)
T d1itva_          74 --QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFP  143 (195)
T ss_dssp             --EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHST
T ss_pred             --EEEEEcCccccCCEEhhhcC-CCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcC
Confidence              367776332111 1222222 232222 23333445678999977       368999988765332  1100    1


Q ss_pred             CCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCC
Q 010551          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~  279 (507)
                      ..|  -.-.++...++++|+|-|.       ..|.||..+.
T Consensus       144 gvp--~~idaAf~~~~~~Yffkg~-------~y~r~~~~~~  175 (195)
T d1itva_         144 GVP--LDTHDVFQFREKAYFCQDR-------FYWRVSSRSE  175 (195)
T ss_dssp             TSC--SSCSEEEEETTEEEEEETT-------EEEEEECCTT
T ss_pred             CCC--CCCcEEEEeCCcEEEEECC-------EEEEEcCCce
Confidence            222  2345666678899998662       4577776554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=1.7  Score=38.40  Aligned_cols=187  Identities=16%  Similarity=0.076  Sum_probs=89.8

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      ++..++.|+.+      ..+.+||....+......   ++..........+  ++.+++.|+.+      ..+..+|+.+
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEeecc------cccccccccccccccccc---cccccccccccccccccccccccccc------cccccccccc
Confidence            55666667653      248888988776554331   1111112222333  34555555543      2488899887


Q ss_pred             CcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeE
Q 010551          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  256 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  256 (507)
                      .+-......    ......+++...++..++.|+.+     +.+.+||+.++.-.....   .  ...-.+++.. ++..
T Consensus       173 ~~~~~~~~~----~~~~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~~---~--~~~i~~l~~~~~~~~  238 (337)
T d1gxra_         173 QTLVRQFQG----HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHD---F--TSQIFSLGYCPTGEW  238 (337)
T ss_dssp             TEEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE---C--SSCEEEEEECTTSSE
T ss_pred             ccccccccc----ccccccccccccccccccccccc-----ccccccccccceeecccc---c--ccceEEEEEcccccc
Confidence            764433211    01111122222344466666653     358889988765332111   1  1111222222 4566


Q ss_pred             EEEeccCCCCCcceEEEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       257 ~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      ++.|+.++     .+.++|+.+..-.......        . ....+.+..+..+++.||.+    +.+.++|....
T Consensus       239 l~~~~~d~-----~i~i~d~~~~~~~~~~~~~--------~-~i~~v~~s~~g~~l~s~s~D----g~i~iwd~~~~  297 (337)
T d1gxra_         239 LAVGMESS-----NVEVLHVNKPDKYQLHLHE--------S-CVLSLKFAYCGKWFVSTGKD----NLLNAWRTPYG  297 (337)
T ss_dssp             EEEEETTS-----CEEEEETTSSCEEEECCCS--------S-CEEEEEECTTSSEEEEEETT----SEEEEEETTTC
T ss_pred             cceecccc-----ccccccccccccccccccc--------c-ccceEEECCCCCEEEEEeCC----CeEEEEECCCC
Confidence            66666433     4778888776543322111        1 11222333333355556654    34677776543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=1.3  Score=38.63  Aligned_cols=174  Identities=10%  Similarity=0.043  Sum_probs=84.6

Q ss_pred             CCeEeeCCCCceEEeecCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCC
Q 010551            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      .+..+|....+......   ..............+..++.|+.+     ..+.+||..++.........           
T Consensus       182 ~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~h-----------  242 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILS---GHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMYTLQGH-----------  242 (355)
T ss_dssp             CEEEEETTTTEEEEEEC---CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTCCEEEEECCC-----------
T ss_pred             eeeeeecccccceeeee---ccccccccccccccceeeeccccc-----ceEEeeeccccccccccccc-----------
Confidence            34555666655444431   111121112222244455555533     35888998876543322111           


Q ss_pred             CcCCCCCccceeEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCC
Q 010551           84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRS  163 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~  163 (507)
                             .....++...++.++.|+.++      .+.+||+.+..-.....    .......++...++++++.| .+  
T Consensus       243 -------~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g-~d--  302 (355)
T d1nexb2         243 -------TALVGLLRLSDKFLVSAAADG------SIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSG-SE--  302 (355)
T ss_dssp             -------SSCCCEEEECSSEEEEECTTS------EEEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEE-ET--
T ss_pred             -------cccccccccccceeeeeeccc------ccccccccccceecccc----cCCceEEEEEcCCCCEEEEE-eC--
Confidence                   111234455666667776532      48888988775332221    11222233445566665544 33  


Q ss_pred             CCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECC
Q 010551          164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       164 ~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~  227 (507)
                          +.+.+||+.+++......    .........+.+.++.+++.|+.++..   -+|++|.+
T Consensus       303 ----~~i~vwd~~tg~~~~~~~----~~~~~~V~~v~~~~~~~~~~~s~dg~~---~l~~~dfs  355 (355)
T d1nexb2         303 ----NQFNIYNLRSGKLVHANI----LKDADQIWSVNFKGKTLVAAVEKDGQS---FLEILDFS  355 (355)
T ss_dssp             ----TEEEEEETTTCCBCCSCT----TTTCSEEEEEEEETTEEEEEEESSSCE---EEEEEECC
T ss_pred             ----CEEEEEECCCCCEEEEEe----cCCCCCEEEEEEcCCeEEEEEECCCcE---EEEEEeCC
Confidence                358999998876432111    111112223344566666666654431   36777753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.11  E-value=1.5  Score=37.46  Aligned_cols=225  Identities=16%  Similarity=0.100  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCc
Q 010551           39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  116 (507)
Q Consensus        39 ~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~  116 (507)
                      .+||.+..+     +.+.++|+.+++....-..+                  ..-++++..  +.+||+.++..      
T Consensus         3 ~~yV~~~~~-----~~v~v~D~~t~~~~~~i~~g------------------~~p~~va~spdG~~l~v~~~~~------   53 (301)
T d1l0qa2           3 FAYIANSES-----DNISVIDVTSNKVTATIPVG------------------SNPMGAVISPDGTKVYVANAHS------   53 (301)
T ss_dssp             EEEEEETTT-----TEEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEEGGG------
T ss_pred             EEEEEECCC-----CEEEEEECCCCeEEEEEECC------------------CCceEEEEeCCCCEEEEEECCC------
Confidence            567776532     46899999998765433322                  111333333  45688776543      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CC-EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~  194 (507)
                      ..+.+||+.++.-......     ...-+.++.. ++ .+++.+..+      ..+..++..+.+....-..     ...
T Consensus        54 ~~i~v~d~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-----~~~  117 (301)
T d1l0qa2          54 NDVSIIDTATNNVIATVPA-----GSSPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKT-----GKS  117 (301)
T ss_dssp             TEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC-----SSS
T ss_pred             CEEEEEECCCCceeeeeec-----ccccccccccccccccccccccc------ceeeecccccceeeeeccc-----ccc
Confidence            3599999999875433211     1112233332 23 555544322      3577888887765444221     111


Q ss_pred             CceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEE-C-CeEEEEeccCCCCCcceE
Q 010551          195 DHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       195 ~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~~~  271 (507)
                      .+.++.. ++..+++.+..+     ..+..++..+........  .   ....+.++.. + ..+++.+..     ....
T Consensus       118 ~~~~~~~~dg~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~  182 (301)
T d1l0qa2         118 PLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVS--V---GRSPKGIAVTPDGTKVYVANFD-----SMSI  182 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEE--C---CSSEEEEEECTTSSEEEEEETT-----TTEE
T ss_pred             ceEEEeecCCCeeeeeeccc-----cceeeeeccccceeeecc--c---CCCceEEEeeccccceeeeccc-----cccc
Confidence            2233333 344455544332     357788888776554311  1   1111222222 2 345554332     1235


Q ss_pred             EEEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       272 ~~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      .+++..............        .............+++.+.  +...+.++++|+.+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~v~~~--~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         183 SVIDTVTNSVIDTVKVEA--------APSGIAVNPEGTKAYVTNV--DKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEETTTTEEEEEEECSS--------EEEEEEECTTSSEEEEEEE--CSSCCEEEEEETTTT
T ss_pred             ccccccceeeeecccccC--------Ccceeeccccccccccccc--cceeeeeeeeecCCC
Confidence            566666655544332211        1122233344456665443  223456888888654

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=1.3  Score=36.10  Aligned_cols=153  Identities=11%  Similarity=0.067  Sum_probs=82.8

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC---CCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCc
Q 010551           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS---GKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        95 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~  169 (507)
                      +++.+++.+|+|=|..        +|.++.....+......   ..+|....  ++...  ++.+|+|-|.        .
T Consensus        13 Av~~~~g~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~~lp~~ID--AAf~~~~~~~~yffkg~--------~   74 (192)
T d1pexa_          13 AITSLRGETMIFKDRF--------FWRLHPQQVDAELFLTKSFWPELPNRID--AAYEHPSHDLIFIFRGR--------K   74 (192)
T ss_dssp             EEEEETTEEEEEETTE--------EEEECSSSSCCEEEEHHHHCTTSCSSCC--EEEEETTTTEEEEEETT--------E
T ss_pred             EEEEcCCeEEEEECCE--------EEEEcCCCCCCcccchhhhCcCCCCccc--ceEEEcCCCEEEEEcCC--------E
Confidence            5667799999996642        67776554444432221   12333221  22333  5688888874        3


Q ss_pred             EEEEECCCCcE---EEeccCCCCCCCCCCc-eEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-----ccc-CC
Q 010551          170 VHFLDLETMTW---DAVEVTQTPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEI-KG  238 (507)
Q Consensus       170 ~~~~d~~t~~W---~~~~~~~~~p~~r~~~-~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~-~~  238 (507)
                      +|+|+..+...   ..+...+ +|.+...- ++... .++++|+|-|       +..|+||..++.-..     +.. -+
T Consensus        75 ~w~y~~~~~~~gyPk~i~~~~-~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~  146 (192)
T d1pexa_          75 FWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP  146 (192)
T ss_dssp             EEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred             EEEEcCCcccCCCCeEeeeee-cCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCC
Confidence            67777544332   1222111 12222222 23332 4678999977       468999987664321     111 01


Q ss_pred             CCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEE
Q 010551          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~  282 (507)
                      ..| .. -.++...++++|+|-|       +..|.||..+++-.
T Consensus       147 gvp-~~-vdAa~~~~g~~YfF~g-------~~y~r~~~~~~~v~  181 (192)
T d1pexa_         147 GIG-DK-VDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV  181 (192)
T ss_dssp             TSC-SC-CSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred             CCC-CC-ceEEEEeCCEEEEEEC-------CEEEEEeCCcCeEc
Confidence            122 22 2345566889999966       35788888776543

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=1.1  Score=36.69  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=78.0

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEE-ECCEEEEEeccC
Q 010551           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHY  110 (507)
Q Consensus        32 ~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~  110 (507)
                      +++.+++.+|+|-|       ..+|.|+........-|.....        . ....|.....+... .++++|+|-|. 
T Consensus        11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~--------~-w~glp~~IDAAf~~~~~~k~yfFkg~-   73 (195)
T d1itva_          11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIAD--------K-WPALPRKLDSVFEEPLSKKLFFFSGR-   73 (195)
T ss_dssp             EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHH--------H-CTTSCSSCSEEEECTTTCCEEEEETT-
T ss_pred             eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeee--------e-cCCCCCCccEEEEECCCCEEEEEecC-
Confidence            35567999999987       3466665443332221111100        0 11122223333222 25789998664 


Q ss_pred             CCCCCcceEEEEECCCCcE-EEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccC-
Q 010551          111 KKSSDSMIVRFIDLETNLC-GVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT-  186 (507)
Q Consensus       111 ~~~~~~~~~~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~-  186 (507)
                             .+|+|+-.+-.. ..+...| +|.......++..  ++++|+|-|.        ..++||..+.+-..-.+. 
T Consensus        74 -------~~~~y~~~~~~~Pk~i~~~g-~p~~~~~idaa~~~~~g~~Y~FkG~--------~y~ryd~~~~~v~~gyPk~  137 (195)
T d1itva_          74 -------QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASE  137 (195)
T ss_dssp             -------EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEE
T ss_pred             -------EEEEEcCccccCCEEhhhcC-CCCCchheeeEEEcCCCeEEEEecc--------EEEEEeCCcccccCCCccc
Confidence                   378887433221 1222222 3333333333333  5699999773        479999877642211110 


Q ss_pred             -----CCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCC
Q 010551          187 -----QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       187 -----~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~  229 (507)
                           ...|  ..-.++... ++.+|+|-|       +..|+||..+.
T Consensus       138 i~~~w~gvp--~~idaAf~~-~~~~Yffkg-------~~y~r~~~~~~  175 (195)
T d1itva_         138 VDRMFPGVP--LDTHDVFQF-REKAYFCQD-------RFYWRVSSRSE  175 (195)
T ss_dssp             HHHHSTTSC--SSCSEEEEE-TTEEEEEET-------TEEEEEECCTT
T ss_pred             hhhhcCCCC--CCCcEEEEe-CCcEEEEEC-------CEEEEEcCCce
Confidence                 1122  223444455 556888877       36788887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.55  E-value=2.1  Score=37.32  Aligned_cols=201  Identities=10%  Similarity=-0.040  Sum_probs=98.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCc
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~  116 (507)
                      ++.||.+--     ....++.||+.++.-+.....                  ...+..+..-++.+++...        
T Consensus        29 ~~~l~wvDi-----~~~~I~r~d~~~g~~~~~~~~------------------~~~~~i~~~~dg~l~va~~--------   77 (295)
T d2ghsa1          29 SGTAWWFNI-----LERELHELHLASGRKTVHALP------------------FMGSALAKISDSKQLIASD--------   77 (295)
T ss_dssp             TTEEEEEEG-----GGTEEEEEETTTTEEEEEECS------------------SCEEEEEEEETTEEEEEET--------
T ss_pred             CCEEEEEEC-----CCCEEEEEECCCCeEEEEECC------------------CCcEEEEEecCCCEEEEEe--------
Confidence            567776532     234699999998865544321                  1223333334677776532        


Q ss_pred             ceEEEEECCCCcEEEeecC-CCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          117 MIVRFIDLETNLCGVMETS-GKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~yd~~t~~W~~~~~~-g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      +.+..||+.+++++.+... ...+..|.....+.-++.+|+-......  ..+....|.+..++...+..  ..  .. .
T Consensus        78 ~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~--~~--~~-~  150 (295)
T d2ghsa1          78 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA--DI--SI-P  150 (295)
T ss_dssp             TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE--EE--SS-E
T ss_pred             CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEee--cc--CC-c
Confidence            2499999999999887632 1112222222222235676654322211  12334455555566555532  11  11 1


Q ss_pred             ceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCc--EEe-cccCCCCCCCCC-ccEEEEE-CCeEEEEeccCCCCCcc
Q 010551          196 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQ-PEIKGDLVTGRA-GHAGITI-DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       196 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~-~~~~~~~p~~r~-~~~~~~~-~~~l~v~GG~~~~~~~~  269 (507)
                      .+.+.. +++.+|+..-     ..+.+++|++....  ... .......+.... ..++++- +++++|..-..     .
T Consensus       151 Ng~~~s~d~~~l~~~dt-----~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-----g  220 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDT-----KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-----G  220 (295)
T ss_dssp             EEEEECTTSCEEEEEET-----TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-----T
T ss_pred             ceeeecCCCceEEEeec-----ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-----C
Confidence            122222 3445666432     23568888864321  110 000000111111 1233332 45788762111     2


Q ss_pred             eEEEEECCCCcEEEec
Q 010551          270 ETIVLNMTKLAWSILT  285 (507)
Q Consensus       270 ~~~~~d~~~~~W~~v~  285 (507)
                      .+.+||+.......+.
T Consensus       221 ~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         221 AVDRYDTDGNHIARYE  236 (295)
T ss_dssp             EEEEECTTCCEEEEEE
T ss_pred             ceEEecCCCcEeeEec
Confidence            5889999887777664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.41  E-value=1.1  Score=39.61  Aligned_cols=143  Identities=12%  Similarity=0.013  Sum_probs=75.3

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      .+++||..++...++.   .  ..+  ..++.+  +++.++++|.+..    +.++++|..+..-..+..     ....-
T Consensus        25 ~v~v~d~~~~~~~~~~---~--~~~--v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~-----~~~~v   88 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVP---E--PLR--IRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEE-----NLGNV   88 (360)
T ss_dssp             EEEEECTTSSBEEECS---C--CSC--EEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCC-----CCCSE
T ss_pred             eEEEEECCCCcEEEcc---C--CCC--EEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeC-----CCceE
Confidence            4777888887766653   1  122  223333  5666666554321    348999999988776642     12222


Q ss_pred             ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCC-----CCcce
Q 010551          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----NGCQE  270 (507)
Q Consensus       196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----~~~~~  270 (507)
                      .+++...++..+++++.+     +.++.++..+.....+...   ...........-+++.+++.+....     .....
T Consensus        89 ~~~~~spdg~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          89 FAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             EEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             Eeeeecccccccceeccc-----cccccccccccceeeeeec---ccccccchhhccceeeeeeeccccccceeeccccc
Confidence            333444455466665543     3688899888776554211   1111111222224555555443222     12334


Q ss_pred             EEEEECCCCcEEEe
Q 010551          271 TIVLNMTKLAWSIL  284 (507)
Q Consensus       271 ~~~~d~~~~~W~~v  284 (507)
                      ++++|+.+..=..+
T Consensus       161 ~~v~d~~~~~~~~~  174 (360)
T d1k32a3         161 IHVYDMEGRKIFAA  174 (360)
T ss_dssp             EEEEETTTTEEEEC
T ss_pred             eeeeccccCceeee
Confidence            77889888754443

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=1.6  Score=35.56  Aligned_cols=154  Identities=8%  Similarity=-0.023  Sum_probs=83.6

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCC---CCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCc
Q 010551           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG---KVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        95 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g---~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~  169 (507)
                      +++.+++.+|+|-|..        +|.++.............   .+|...  -++...  ++++|+|-|.        .
T Consensus        16 Av~~~~G~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG~--------~   77 (195)
T d1su3a2          16 AITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKGN--------K   77 (195)
T ss_dssp             EEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEETT--------E
T ss_pred             EEEEcCCeEEEEeCCE--------EEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECCc--------E
Confidence            5667899999997742        566655554443322221   233322  133333  4799999884        4


Q ss_pred             EEEEECCCCc---EEEecc-CCCCCCCCCCc-eEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-----ccc-C
Q 010551          170 VHFLDLETMT---WDAVEV-TQTPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEI-K  237 (507)
Q Consensus       170 ~~~~d~~t~~---W~~~~~-~~~~p~~r~~~-~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~-~  237 (507)
                      .++|+-.+..   -..+.. -| +|.....- ++... .++++|+|-|       +..|+||..+..-..     +.. -
T Consensus        78 y~~y~~~~~~~g~p~~i~~~~G-~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w  149 (195)
T d1su3a2          78 YWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDF  149 (195)
T ss_dssp             EEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHS
T ss_pred             EEEEcCCccccCCCccchhhcC-CCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCccccccccc
Confidence            7788743211   111111 01 22222222 22233 4578999988       478999988765321     111 0


Q ss_pred             CCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEE
Q 010551          238 GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~  283 (507)
                      +..|.  .-.++...++++|+|-|       +..|.||..+..-..
T Consensus       150 ~Gvp~--~iDAAf~~~g~~YfFkg-------~~y~r~~~~~~~v~~  186 (195)
T d1su3a2         150 PGIGH--KVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT  186 (195)
T ss_dssp             TTSCS--CCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             CCCCC--CccEEEEECCeEEEEEC-------CEEEEEeCCcCEEEe
Confidence            12222  23355566889999966       357889887765433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=2.4  Score=37.18  Aligned_cols=111  Identities=14%  Similarity=0.069  Sum_probs=56.6

Q ss_pred             EEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEE-c-CCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          153 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       153 ~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      .+++.||.+.      .+..||..+.+-......  .......-..+.+ . .+.+++.||.+     +.+.+||+.+++
T Consensus       173 ~~~~~~~~d~------~v~~~d~~~~~~~~~~~~--~~~~~~~v~~v~~~pd~~~~l~s~~~d-----~~i~iwd~~~~~  239 (325)
T d1pgua1         173 MRSMTVGDDG------SVVFYQGPPFKFSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGE  239 (325)
T ss_dssp             CEEEEEETTT------EEEEEETTTBEEEEEECS--SSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCC
T ss_pred             ceEEEeeccc------ccccccccccccceeccc--ccCCCCccEEeeeccccceeccccccc-----cceeeeeecccc
Confidence            4566666543      477888766543332211  1111111122223 2 34567767654     358899998877


Q ss_pred             EEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcE
Q 010551          231 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       231 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  281 (507)
                      ....-.....+.....++....++..++.|+.++     .+.++|+.+++-
T Consensus       240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-----~i~iwd~~~~~~  285 (325)
T d1pgua1         240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKC  285 (325)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred             ccccccccccccccceeeeeccCCCEEEEEeCCC-----eEEEEECCCCCE
Confidence            5442111122222222333334566777776443     477889888753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=93.19  E-value=2.6  Score=37.17  Aligned_cols=192  Identities=10%  Similarity=0.044  Sum_probs=91.9

Q ss_pred             CeEeeCCCCceEEeecCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccC
Q 010551            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ++.+|+.+..+..+.........-..+.+++.  ++.||+..+      .+.+.++|+.......+.....         
T Consensus        48 I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~------~~~i~~~~~~g~~~~~~~~~~~---------  112 (314)
T d1pjxa_          48 ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM------RLGLLVVQTDGTFEEIAKKDSE---------  112 (314)
T ss_dssp             EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET------TTEEEEEETTSCEEECCSBCTT---------
T ss_pred             EEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC------CCeEEEEeCCCcEEEEEecccc---------
Confidence            68889999988877631111111223344444  457888764      2458899998765544333221         


Q ss_pred             CCcCCCCCccceeEEEECCEEEEEe--ccCC-------CCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-
Q 010551           83 GLLEVLPPMSDHCMVKWGTKLLILG--GHYK-------KSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-  152 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~lyv~G--G~~~-------~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-  152 (507)
                         +.+.......++.-++.||+--  +...       .......+|++++.. +...+..  .+..+ .+.+....++ 
T Consensus       113 ---g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~--~~~~p-NGi~~~~d~d~  185 (314)
T d1pjxa_         113 ---GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT--AFQFP-NGIAVRHMNDG  185 (314)
T ss_dssp             ---SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE--EESSE-EEEEEEECTTS
T ss_pred             ---ccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC--Cccee-eeeEECCCCCc
Confidence               1111111222223357888752  1111       011234688888753 4555432  11111 1111112222 


Q ss_pred             ---EEEEEcCCCCCCCccCcEEEEECCCCc---EEEeccCCCCCCCCC--CceEEEEcCCEEEEEcCCCCCCCCCcEEEE
Q 010551          153 ---RLIIFGGEDRSRKLLNDVHFLDLETMT---WDAVEVTQTPPAPRY--DHSAALHANRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       153 ---~iy~~GG~~~~~~~~n~~~~~d~~t~~---W~~~~~~~~~p~~r~--~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~  224 (507)
                         .||+...      ..+.+++||+....   +..+-.  ..+....  --.+++-.++.|||..-.     .+.|++|
T Consensus       186 ~~~~lyv~d~------~~~~i~~~d~~~~g~~~~~~~~~--~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g~I~~~  252 (314)
T d1pjxa_         186 RPYQLIVAET------PTKKLWSYDIKGPAKIENKKVWG--HIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVF  252 (314)
T ss_dssp             CEEEEEEEET------TTTEEEEEEEEETTEEEEEEEEE--ECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEE
T ss_pred             ceeEEEEEee------cccceEEeeccCccccceeeEEE--EccccccccceeeEEecCCcEEEEEcC-----CCEEEEE
Confidence               4666432      24578998865332   222211  1111111  113444445668885321     2479999


Q ss_pred             ECCCCcE
Q 010551          225 DLQTNEW  231 (507)
Q Consensus       225 d~~~~~W  231 (507)
                      |+.++..
T Consensus       253 dp~~g~~  259 (314)
T d1pjxa_         253 GPDGGQP  259 (314)
T ss_dssp             CTTCBSC
T ss_pred             eCCCCEE
Confidence            9987653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.83  E-value=0.24  Score=43.23  Aligned_cols=145  Identities=12%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             CEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCC
Q 010551           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD  115 (507)
Q Consensus        38 ~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~  115 (507)
                      +.+++.|+.+     ..+.+||+.+.....+.....                 ......+.+  ++..++.|+.+.    
T Consensus       148 ~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d~----  201 (299)
T d1nr0a2         148 KQFVAVGGQD-----SKVHVYKLSGASVSEVKTIVH-----------------PAEITSVAFSNNGAFLVATDQSR----  201 (299)
T ss_dssp             SCEEEEEETT-----SEEEEEEEETTEEEEEEEEEC-----------------SSCEEEEEECTTSSEEEEEETTS----
T ss_pred             cccccccccc-----ccccccccccccccccccccc-----------------ccccccccccccccccccccccc----
Confidence            3444555432     358888888776655443321                 111122222  344555555432    


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r  193 (507)
                        .+.+||..++.......  ..........++.+  ++.+++.||.++      .+.+||+.+.....+.....  ...
T Consensus       202 --~i~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~sgs~dg------~i~iwd~~~~~~~~~~~~~~--~~~  269 (299)
T d1nr0a2         202 --KVIPYSVANNFELAHTN--SWTFHTAKVACVSWSPDNVRLATGSLDN------SVIVWNMNKPSDHPIIIKGA--HAM  269 (299)
T ss_dssp             --CEEEEEGGGTTEESCCC--CCCCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCTTSCCEEETTS--STT
T ss_pred             --ccccccccccccccccc--cccccccccccccccccccceEEEcCCC------EEEEEECCCCCcceEEEecC--CCC
Confidence              38899988876543221  11111122223333  456777777653      58999988766543322111  111


Q ss_pred             CCceE-EEEcCCEEEEEcCCCCCCCCCcEEEEEC
Q 010551          194 YDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDL  226 (507)
Q Consensus       194 ~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~  226 (507)
                      ....+ +..+++ .++.||.++     .+.++|+
T Consensus       270 ~~v~~~~~~~~~-~l~s~s~D~-----~i~iWdl  297 (299)
T d1nr0a2         270 SSVNSVIWLNET-TIVSAGQDS-----NIKFWNV  297 (299)
T ss_dssp             SCEEEEEEEETT-EEEEEETTS-----CEEEEEC
T ss_pred             CcEEEEEECCCC-EEEEEeCCC-----EEEEEec
Confidence            12222 223455 566666542     4666665

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=92.67  E-value=2.7  Score=36.00  Aligned_cols=130  Identities=12%  Similarity=0.098  Sum_probs=68.1

Q ss_pred             ccccCCCcCCCCCccceeEEEECCEEEEEeccCCCCCCcc-eEEEEE-----CCCCcEEEeecCCCCCCCCcCcEEEEEC
Q 010551           78 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFID-----LETNLCGVMETSGKVPVTRGGHSVTLVG  151 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~~~~yd-----~~t~~W~~~~~~g~~p~~r~~~~~~~~~  151 (507)
                      |+.--++...|.-..-|+.++++++-+.+|-++++-.... -+..|.     |....=+.++.  .--......+.-..+
T Consensus       267 pw~~t~l~~i~~vte~hsfa~idn~~~avgyhn~dv~pr~lg~lyf~daf~sp~~fvrr~i~~--~y~~nasepcvk~y~  344 (516)
T d1v0ea1         267 PWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEPCIKYYD  344 (516)
T ss_dssp             CCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEEEEEEET
T ss_pred             CceeccccccceeeeeeeEEEEcCCceEEEeccCCcCcceeeEEEcccccCCccceeeeccch--hhcCCCCCchhhhcC
Confidence            3333344556666778999999999999988776654222 222231     11111222221  001111223444568


Q ss_pred             CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCC
Q 010551          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  212 (507)
Q Consensus       152 ~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~  212 (507)
                      +-||+.--..-....-.++++-.-....|..+....  ....+.--.+.+++ .|||||--
T Consensus       345 gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lrfp~--nvhhsnlpfakvgd-~l~ifgse  402 (516)
T d1v0ea1         345 GVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPH--NVHHTTLPFAKVGD-DLIMFGSE  402 (516)
T ss_dssp             TEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTT--CCCSSCCCEEEETT-EEEEEEEC
T ss_pred             CEEEEEeccccCCCCCccceeccccccChhhccCCc--cccccCCChhhcCC-eEEEeccc
Confidence            888887432222223345666555566799996421  11122223456644 59999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=2.5  Score=35.44  Aligned_cols=192  Identities=14%  Similarity=0.172  Sum_probs=93.0

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEeccCCC
Q 010551           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  112 (507)
Q Consensus        33 ~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~  112 (507)
                      ++..++.+++.|+.+     ..+.++|+.+++-...-...                  .....++..++++++.||.+. 
T Consensus        20 c~~~d~~~l~sgs~D-----g~i~vWd~~~~~~~~~l~~H------------------~~~V~~v~~~~~~l~s~s~D~-   75 (293)
T d1p22a2          20 CLQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILTGH------------------TGSVLCLQYDERVIITGSSDS-   75 (293)
T ss_dssp             EEECCSSEEEEEESS-----SCEEEEESSSCCEEEEECCC------------------SSCEEEEECCSSEEEEEETTS-
T ss_pred             EEEEcCCEEEEEeCC-----CeEEEEECCCCcEEEEEecC------------------CCCEeeeecccceeecccccc-
Confidence            344577777778754     35888998876543321110                  111234455777777777543 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEE-EeccCCCCCC
Q 010551          113 SSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTPPA  191 (507)
Q Consensus       113 ~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~-~~~~~~~~p~  191 (507)
                           .+..++..++.........    ...........+.+...++       ...+..+|..+..-. ....   ...
T Consensus        76 -----~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~  136 (293)
T d1p22a2          76 -----TVRVWDVNTGEMLNTLIHH----CEAVLHLRFNNGMMVTCSK-------DRSIAVWDMASPTDITLRRV---LVG  136 (293)
T ss_dssp             -----CEEEEESSSCCEEEEECCC----CSCEEEEECCTTEEEEEET-------TSCEEEEECSSSSCCEEEEE---ECC
T ss_pred             -----ccccccccccccccccccc----ccccccccccccceeeccc-------ccceeEeecccccccccccc---ccc
Confidence                 3888898888766554211    1111111222334433332       223566666544311 1111   111


Q ss_pred             CCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceE
Q 010551          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~  271 (507)
                      ..............++..++ +     ..+..+|+.+..-..... +.    .........++..++.|+.++     .+
T Consensus       137 ~~~~v~~~~~~~~~~~~~s~-d-----~~i~~~d~~~~~~~~~~~-~~----~~~v~~~~~~~~~l~~~~~dg-----~i  200 (293)
T d1p22a2         137 HRAAVNVVDFDDKYIVSASG-D-----RTIKVWNTSTCEFVRTLN-GH----KRGIACLQYRDRLVVSGSSDN-----TI  200 (293)
T ss_dssp             CSSCEEEEEEETTEEEEEET-T-----SEEEEEETTTCCEEEEEE-CC----SSCEEEEEEETTEEEEEETTS-----CE
T ss_pred             cccccccceecccccccccC-C-----CceeeecCCCCcEEEEEc-cc----ccccccccCCCCeEEEecCCC-----EE
Confidence            12222223334453444333 2     358888888776443211 11    111122333455666666443     36


Q ss_pred             EEEECCCCcEEE
Q 010551          272 IVLNMTKLAWSI  283 (507)
Q Consensus       272 ~~~d~~~~~W~~  283 (507)
                      .+||+.+..-..
T Consensus       201 ~i~d~~~~~~~~  212 (293)
T d1p22a2         201 RLWDIECGACLR  212 (293)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEecccceeee
Confidence            788888766443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.26  E-value=4.3  Score=37.42  Aligned_cols=125  Identities=6%  Similarity=-0.013  Sum_probs=65.8

Q ss_pred             ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCC---CcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEE
Q 010551          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT---NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~---~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~  272 (507)
                      +..+...++.+|+.-..+.  ....+...++..   ..|+.+-  +..........+...++.+++.-   ..+....+.
T Consensus       290 ~~~~~~~~~~~~~~Tn~~a--~~~~L~~~~~~~~~~~~w~~vi--~~~~~~~~~~~~~~~~~~lvl~~---~~~~~~~l~  362 (430)
T d1qfma1         290 YDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRSNFLVLCY---LHDVKNTLQ  362 (430)
T ss_dssp             EEEEEEETTEEEEEECTTC--TTCEEEEEETTBCCGGGCEEEE--CCCSSCEEEEEEEETTTEEEEEE---EETTEEEEE
T ss_pred             eEEEecCCceeecccCccc--ccceeEEecCCCCccccceEEe--cccCcceeeeEEEEECCEEEEEE---EcCCEeEEE
Confidence            3344455666777655432  234577777654   4577652  11111122222333356655542   123456789


Q ss_pred             EEECCCCcEEEeccCCCCCCCCCCCCceEEEEEcCc-eEEEEEccCCCCcCceEEEEECCCCCCC
Q 010551          273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       273 ~~d~~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~w~  336 (507)
                      ++++.++.|..+...+.       +........... ...|.+.++.  ....+|.||+.+....
T Consensus       363 v~~~~~~~~~~~~~~~~-------~sv~~~~~~~~~~~~~~~~ss~~--tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         363 LHDLATGALLKIFPLEV-------GSVVGYSGQKKDTEIFYQFTSFL--SPGIIYHCDLTKEELE  418 (430)
T ss_dssp             EEETTTCCEEEEECCCS-------SEEEEEECCTTCSEEEEEEECSS--CCCEEEEEETTSSSCC
T ss_pred             EEECCCCcEEEecCCCC-------ceEeeccCCCCCCEEEEEEcCCC--CCCeEEEEECCCCCcc
Confidence            99999999998754321       111111111222 3344455544  4678999999876543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.64  E-value=3.3  Score=34.87  Aligned_cols=241  Identities=7%  Similarity=-0.006  Sum_probs=114.9

Q ss_pred             CCCeEeeCCCCceEEeecCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCcccc
Q 010551            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~   81 (507)
                      -++|++|+....-++|...   +. ....-...- |..|.............++++++..++..+.+......       
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~---~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~-------   89 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSN---LG-VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK-------   89 (281)
T ss_dssp             TEEEEEETTTCCEEEEECS---SS-EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE-------
T ss_pred             CcEEEEECCCCCEEEEecC---CC-cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC-------
Confidence            4689999999998888632   11 111111111 45565544322233345799999999988887654311       


Q ss_pred             CCCcCCCCCccceeEEEE--CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECC-EEEEEc
Q 010551           82 SGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGS-RLIIFG  158 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~iy~~G  158 (507)
                           ...++........  +++.+++.-..........++..+..+.......      ..... ....-.+ .++.+.
T Consensus        90 -----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~  157 (281)
T d1k32a2          90 -----STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN------LGPAT-HILFADGRRVIGRN  157 (281)
T ss_dssp             -----EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC------SCSCS-EEEEETTEEEEEES
T ss_pred             -----ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec------CCccc-eeeecCCCeEEEee
Confidence                 1112222223333  4444444433333333445666777666554432      11112 2233333 444444


Q ss_pred             CCCCCCC-----ccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          159 GEDRSRK-----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       159 G~~~~~~-----~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      .......     ..............-.....     ...... ......+.++......+   ..+||.+|+.+...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~---~~~l~~~d~~g~~~~~  228 (281)
T d1k32a2         158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD-----MSTHVS-SPVIVGHRIYFITDIDG---FGQIYSTDLDGKDLRK  228 (281)
T ss_dssp             CSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC-----CSSCCE-EEEEETTEEEEEECTTS---SCEEEEEETTSCSCEE
T ss_pred             ccccceeeeeccCCcceeeeeccccceeeccC-----Cccccc-eeeeeccccceeccccc---ccceEEEeCCCCceEE
Confidence            3322110     01122222222222222211     111112 22223444444433222   3579999999988777


Q ss_pred             cccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcEEEecc
Q 010551          234 PEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~v~~  286 (507)
                      +......     .......+++-++|.-      -.++|++|+.++.-++|+.
T Consensus       229 lt~~~~~-----~~~~~SpDG~~I~f~~------~~~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         229 HTSFTDY-----YPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             CCCCCSS-----CEEEEEESSSCEEEEE------TTEEEEECTTTCCEEECCC
T ss_pred             eecCCCc-----ccccCcCCCCEEEEEe------CCEEEEEECCCCCEEEecc
Confidence            6432111     1112334443333311      1269999999999988854

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.34  E-value=4.5  Score=35.81  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=51.4

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcEEEeecC-CCCCCC-CcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEEC
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS-GKVPVT-RGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-g~~p~~-r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~  175 (507)
                      ++.+++.|+.+.      .+.+||..++........ ...... .....++.+  ++..++.|+.+      +.+.+||+
T Consensus       216 ~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------~~i~iwd~  283 (388)
T d1erja_         216 DGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------RSVKLWNL  283 (388)
T ss_dssp             TCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------SEEEEEEC
T ss_pred             CCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC------CcEEEEec
Confidence            456666666432      388999988875543211 011111 111222333  34566666654      24778887


Q ss_pred             CCCcEEEeccCCCC--------CCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          176 ETMTWDAVEVTQTP--------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       176 ~t~~W~~~~~~~~~--------p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      .+..-.........        .....-.+++...++.+++.|+.+     +.+.+||+.+++-.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~vwd~~~~~~~  343 (388)
T d1erja_         284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDKKSGNPL  343 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEETTTCCEE
T ss_pred             cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEE
Confidence            65432211110000        000111122222344466666654     36889998877643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.16  E-value=6.8  Score=37.52  Aligned_cols=124  Identities=13%  Similarity=0.049  Sum_probs=71.0

Q ss_pred             eeEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCC-----CCCCCCcCcEEEEECCEEEEEcCCCCCCCc
Q 010551           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-----KVPVTRGGHSVTLVGSRLIIFGGEDRSRKL  166 (507)
Q Consensus        94 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g-----~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~  166 (507)
                      .+-+++++.||+...       ...++.+|..|++  |+.-....     ...........+..+++||+...       
T Consensus        60 stPiv~~g~vyv~t~-------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------  125 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (560)
T ss_dssp             CCCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             eCCEEECCEEEEECC-------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------
Confidence            455788999998765       3469999999995  87532100     01111222345566778776543       


Q ss_pred             cCcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC-CCCCCCcEEEEECCCCc--EEec
Q 010551          167 LNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNE--WSQP  234 (507)
Q Consensus       167 ~n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~--W~~~  234 (507)
                      -..++.+|..+++  |.....  .........+...+.++ .+++|+.. .......+..||..|++  |+.-
T Consensus       126 ~g~l~Alda~tG~~~w~~~~~--~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         126 DGRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCcEEeccCcc--CcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeee
Confidence            1358999988875  765432  22222222223334466 44455433 22333569999999985  7664

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.80  E-value=4.5  Score=34.84  Aligned_cols=172  Identities=12%  Similarity=0.066  Sum_probs=85.2

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE-CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCc
Q 010551          118 IVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       118 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~  196 (507)
                      .+..||..+++.....   ...... ..+.... .+..++.|+.+      +.+.+||..+..-...-. +    .....
T Consensus       182 ~i~~~d~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~-~----h~~~v  246 (355)
T d1nexb2         182 TLIVWDVAQMKCLYIL---SGHTDR-IYSTIYDHERKRCISASMD------TTIRIWDLENGELMYTLQ-G----HTALV  246 (355)
T ss_dssp             CEEEEETTTTEEEEEE---CCCSSC-EEEEEEETTTTEEEEEETT------SCEEEEETTTCCEEEEEC-C----CSSCC
T ss_pred             eeeeeecccccceeee---eccccc-cccccccccceeeeccccc------ceEEeeeccccccccccc-c----ccccc
Confidence            3888898888654433   111111 1222222 34555666654      348889988776543321 1    11122


Q ss_pred             eEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEEC
Q 010551          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  276 (507)
Q Consensus       197 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~  276 (507)
                      .++...++ +++.|+.+     ..+.+||+.+..-..... .   ...........++.+++.|. +     ..+.+||+
T Consensus       247 ~~~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~g~-d-----~~i~vwd~  310 (355)
T d1nexb2         247 GLLRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSYH-H---TNLSAITTFYVSDNILVSGS-E-----NQFNIYNL  310 (355)
T ss_dssp             CEEEECSS-EEEEECTT-----SEEEEEETTTCCEEEEEE-C---TTCCCCCEEEECSSEEEEEE-T-----TEEEEEET
T ss_pred             cccccccc-eeeeeecc-----cccccccccccceecccc-c---CCceEEEEEcCCCCEEEEEe-C-----CEEEEEEC
Confidence            34455555 66667654     358888987765332110 0   11122233344666665543 2     25788998


Q ss_pred             CCCcEEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEEC
Q 010551          277 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       277 ~~~~W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~  330 (507)
                      .++..-.. .+.+.      ......+..+++ .+++.|+.++.  .-+|.+|.
T Consensus       311 ~tg~~~~~-~~~~~------~~~V~~v~~~~~-~~~~~~s~dg~--~~l~~~df  354 (355)
T d1nexb2         311 RSGKLVHA-NILKD------ADQIWSVNFKGK-TLVAAVEKDGQ--SFLEILDF  354 (355)
T ss_dssp             TTCCBCCS-CTTTT------CSEEEEEEEETT-EEEEEEESSSC--EEEEEEEC
T ss_pred             CCCCEEEE-EecCC------CCCEEEEEEcCC-eEEEEEECCCc--EEEEEEeC
Confidence            87653111 11110      111222334444 56666776653  24677775

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.43  E-value=5.7  Score=38.31  Aligned_cols=129  Identities=12%  Similarity=0.138  Sum_probs=70.3

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEccCCc--eeeeccccccCCCccccCCCcCCCCCccceeEEEECCEEEEEec
Q 010551           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~iyi~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG  108 (507)
                      .+-+++++.||+...      .+.++.+|..|++  |+.-+.....          ..+......-+.+..++.||+...
T Consensus        62 stPiv~~g~vy~~t~------~~~v~AlDa~TG~~lW~~~~~~~~~----------~~~~~~~~~rg~a~~~~~i~~~t~  125 (582)
T d1flga_          62 SQAIVSDGVIYVTAS------YSRLFALDAKTGKRLWTYNHRLPDD----------IRPCCDVVNRGAAIYGDKVFFGTL  125 (582)
T ss_dssp             CCCEEETTEEEEEET------TTEEEEEESSSCCEEEEEECCCCTT----------CCCSSCSCCCCCEEETTEEEEEET
T ss_pred             cCCEEECCEEEEeCC------CCeEEEEeCCCCCeEEEEcCCCCCc----------cccccccccCCceEeCCceEEecC
Confidence            445778999999865      3579999999885  8754322110          000011122345667888887422


Q ss_pred             cCCCCCCcceEEEEECCCC--cEEEeecCCCCCCC--CcCcEEEEEC---CEEEEEcCCC-CCCCccCcEEEEECCCCc-
Q 010551          109 HYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVT--RGGHSVTLVG---SRLIIFGGED-RSRKLLNDVHFLDLETMT-  179 (507)
Q Consensus       109 ~~~~~~~~~~~~~yd~~t~--~W~~~~~~g~~p~~--r~~~~~~~~~---~~iy~~GG~~-~~~~~~n~~~~~d~~t~~-  179 (507)
                             ...++.+|..|+  .|+....  +....  ..+...+..+   ..++++.|.. ........+..||..+++ 
T Consensus       126 -------~~~l~alda~tG~~~W~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~  196 (582)
T d1flga_         126 -------DASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             -------TTEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             -------CCeEEEecccccceeeeeccc--CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence                   234899999999  4765431  11111  1122222222   2334444432 222234568899998875 


Q ss_pred             -EEEec
Q 010551          180 -WDAVE  184 (507)
Q Consensus       180 -W~~~~  184 (507)
                       |+...
T Consensus       197 ~W~~~~  202 (582)
T d1flga_         197 IWMRPF  202 (582)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence             76544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.41  E-value=4.4  Score=34.12  Aligned_cols=52  Identities=10%  Similarity=0.085  Sum_probs=27.2

Q ss_pred             cEEEEECCCCcEEecccCCCCCCCCCccEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          220 DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       220 ~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      .+..+|+.++.....-. +.   ...-.+++.. ++.+++.||.++     .+.+||+.+..
T Consensus       228 ~i~~~~~~~~~~~~~~~-~~---~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~  280 (317)
T d1vyhc1         228 TIKMWDVSTGMCLMTLV-GH---DNWVRGVLFHSGGKFILSCADDK-----TLRVWDYKNKR  280 (317)
T ss_dssp             EEEEEETTTTEEEEEEE-CC---SSCEEEEEECSSSSCEEEEETTT-----EEEEECCTTSC
T ss_pred             EEEEEECCCCcEEEEEe-CC---CCCEEEEEECCCCCEEEEEECCC-----eEEEEECCCCc
Confidence            57888888776543211 10   1111122222 456667766443     47788887653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.55  E-value=6  Score=34.37  Aligned_cols=112  Identities=13%  Similarity=0.014  Sum_probs=58.2

Q ss_pred             CEEEEEeccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEE---CCEEEEEcCCCCCCCccCcEEEEECCC
Q 010551          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       101 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d~~t  177 (507)
                      +.+++.||.+      ..+..||..+..-.....  ..........++.+   ++.+++.||.+.      .+.+||+.+
T Consensus       172 ~~~~~~~~~d------~~v~~~d~~~~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d~------~i~iwd~~~  237 (325)
T d1pgua1         172 PMRSMTVGDD------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKS  237 (325)
T ss_dssp             SCEEEEEETT------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTT
T ss_pred             cceEEEeecc------cccccccccccccceecc--cccCCCCccEEeeeccccceecccccccc------ceeeeeecc
Confidence            4456666643      247788877765433321  11111122233334   246777777653      488999988


Q ss_pred             CcEEEeccCCCCCCCCCCceE-EEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe
Q 010551          178 MTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       178 ~~W~~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ++....-. +. ..+...... ....++.+++.|+.+     ..+.+||+.+++-..
T Consensus       238 ~~~~~~l~-~~-~~~v~~~~~s~~~~dg~~l~s~s~D-----~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         238 GEFLKYIE-DD-QEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             CCEEEECC-BT-TBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEE
T ss_pred             cccccccc-cc-ccccccceeeeeccCCCEEEEEeCC-----CeEEEEECCCCCEEE
Confidence            77543311 11 111222222 223444466677654     358889999887543

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=4.8  Score=32.69  Aligned_cols=107  Identities=13%  Similarity=0.078  Sum_probs=56.6

Q ss_pred             CCEEEEEeccCCCCCCcceEEEEECCCCcE---EEeecCCCCCCCCcCcEEEE-E--CCEEEEEcCCCCCCCccCcEEEE
Q 010551          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLC---GVMETSGKVPVTRGGHSVTL-V--GSRLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus       100 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W---~~~~~~g~~p~~r~~~~~~~-~--~~~iy~~GG~~~~~~~~n~~~~~  173 (507)
                      ++++|++-|..        .|+|+-.+-..   +.+...| +|......-++. .  ++++|+|-|.        ..++|
T Consensus        69 ~~~~yffkg~~--------~~~y~~~~~~~gyPk~i~~~g-~p~~~~~iDAA~~~~~~g~~YfFkg~--------~y~ry  131 (200)
T d1gena_          69 EEKAVFFAGNE--------YWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRY  131 (200)
T ss_dssp             TTEEEEEETTE--------EEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEETT--------EEEEE
T ss_pred             CCeEEEecCce--------EEEEcCcccccCCCceehhcC-CCCCccceeeEEEECCCCeEEEEeCc--------EEEEe
Confidence            67788887643        77776432111   1121112 232222232333 2  4699999883        47899


Q ss_pred             ECCCCcEE-----Eecc-CCCCCCCCCCceEEEE-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          174 DLETMTWD-----AVEV-TQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       174 d~~t~~W~-----~~~~-~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      |..++.-.     .+.. =..+|  ..-.++... .++++|+|-|       +..|+||..+.+..
T Consensus       132 d~~~~~vd~~yPk~I~~~w~gvp--~~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~~~  188 (200)
T d1gena_         132 NEVKKKMDPGFPKLIADAWNAIP--DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLKSV  188 (200)
T ss_dssp             ETTTTEECSSCCEEHHHHSSSCC--SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEEEE
T ss_pred             ccccceeccCcceehhhccCCCC--CCccEEEEecCCCEEEEEEC-------CEEEEEECCceEEc
Confidence            98776421     1110 01223  222344443 4678999987       46788887655443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.18  E-value=7  Score=33.38  Aligned_cols=106  Identities=13%  Similarity=0.114  Sum_probs=53.7

Q ss_pred             CEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcE
Q 010551          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       152 ~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      +.+++.|+.+      ..+.+||+.+.+-...-. +.   ...-.+++...++.+++.|+.+     ..+..+|+.....
T Consensus       196 ~~~~~~~~~d------~~v~i~d~~~~~~~~~~~-~h---~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~  260 (340)
T d1tbga_         196 TRLFVSGACD------ASAKLWDVREGMCRQTFT-GH---ESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQE  260 (340)
T ss_dssp             SSEEEEEETT------TEEEEEETTTTEEEEEEC-CC---SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred             cceeEEeecC------ceEEEEECCCCcEEEEEe-CC---CCCeEEEEECCCCCEEEEEeCC-----CeEEEEeeccccc
Confidence            3555555544      358888987765332211 00   1111222333344466666654     2578888877665


Q ss_pred             EecccCCCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          232 SQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       232 ~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ....   ...........+.+  ++.+++.|+.++     .+.+||+.+..
T Consensus       261 ~~~~---~~~~~~~~i~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~  303 (340)
T d1tbga_         261 LMTY---SHDNIICGITSVSFSKSGRLLLAGYDDF-----NCNVWDALKAD  303 (340)
T ss_dssp             EEEE---CCTTCCSCEEEEEECSSSCEEEEEETTS-----CEEEEETTTCC
T ss_pred             cccc---ccccccCceEEEEECCCCCEEEEEECCC-----EEEEEECCCCc
Confidence            4421   11111122222333  456777776443     47889987654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.05  E-value=5.3  Score=34.23  Aligned_cols=97  Identities=22%  Similarity=0.138  Sum_probs=54.0

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCCcCcEEEEECCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCC
Q 010551          116 SMIVRFIDLETNLCGVMETSGKVPVTRGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       116 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~  195 (507)
                      ...+..++..++.+.....   .|.......+....+..+++++       .+.+.++|+.+.+....-..     +...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~i~v~d~~~~~~~~~~~~-----~~~~  282 (337)
T d1pbyb_         218 RTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA-------YNVLESFDLEKNASIKRVPL-----PHSY  282 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE-------ESEEEEEETTTTEEEEEEEC-----SSCC
T ss_pred             CccEEEEEcCCCcEEEEEe---cCCCcceEEEEecccceEEEEc-------cccEEEEECCCCcEEEEEcC-----CCCE
Confidence            3458888999988776542   2333333333333332233333       24689999998876554332     2222


Q ss_pred             ceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCcEE
Q 010551          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       196 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      ++++.-.++..+++|+.+     +.+.+||..+.+-.
T Consensus       283 ~~~~~s~dG~~l~v~~~~-----~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         283 YSVNVSTDGSTVWLGGAL-----GDLAAYDAETLEKK  314 (337)
T ss_dssp             CEEEECTTSCEEEEESBS-----SEEEEEETTTCCEE
T ss_pred             EEEEECCCCCEEEEEeCC-----CcEEEEECCCCcEE
Confidence            444444444343445533     57999999886543

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.20  E-value=7.1  Score=31.39  Aligned_cols=102  Identities=19%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             ECCEEEEEeccCCCCCCcceEEEEECCCCcEE---EeecC-CCCCCCCcCcEEEEE------CCEEEEEcCCCCCCCccC
Q 010551           99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCG---VMETS-GKVPVTRGGHSVTLV------GSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus        99 ~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~~~~-g~~p~~r~~~~~~~~------~~~iy~~GG~~~~~~~~n  168 (507)
                      -++++|+|-|.        .+|+|+-.+....   .+... ..+|.. . .++...      ++++|+|-|.        
T Consensus        58 ~~~~~yfFkG~--------~yw~y~~~~~~~gyPk~i~~~~~glp~~-i-DAA~~~~~~~~~~~~~yfFkg~--------  119 (192)
T d1qhua1          58 GHTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIPFP-L-DAAVECHRGECQDEGILFFQGN--------  119 (192)
T ss_dssp             TTTEEEEEETT--------EEEEECC-------CEEHHHHSTTCCSS-C-CEEEEECBBTBSSSEEEEEETT--------
T ss_pred             CCCcEEEEeCC--------EEEEEeCCccccCCCcChHHhCCCCCCC-c-eEEEEccccccCCCeEEEEeCC--------
Confidence            36799999874        2788865443321   11110 112221 1 223322      5789999774        


Q ss_pred             cEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010551          169 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       169 ~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ..++||..+..=..-.-. .+|  ... +++.. ++.+|+|-|       +..|+||..+..
T Consensus       120 ~yw~yd~~~~~~~~~~w~-gip--~~d-aA~~~-~g~~YfFkg-------~~y~r~~~~~~~  169 (192)
T d1qhua1         120 RKWFWDLTTGTKKERSWP-AVG--NCT-SALRW-LGRYYCFQG-------NQFLRFNPVSGE  169 (192)
T ss_dssp             EEEEEETTTTEEEEECCT-TSC--CCS-EEEEE-TTEEEEEET-------TEEEEECTTTCC
T ss_pred             eEEEEeCCCCCccccccc-CcC--Ccc-eeEEe-CCcEEEEEC-------CEEEEEcCCcce
Confidence            378999887642211111 122  222 33334 677999987       478899877754

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=7.6  Score=31.44  Aligned_cols=151  Identities=11%  Similarity=0.127  Sum_probs=76.8

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceEEEEECCCCcEEE-eecC---CCCCCCCcCcEEEEE--CCEEEEEcCCCCCCCccC
Q 010551           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METS---GKVPVTRGGHSVTLV--GSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus        95 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~---g~~p~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n  168 (507)
                      +++.+++.+|+|=|..        +|.++........ ....   ..+|... . ++...  ++++|+|-|.        
T Consensus        17 Av~~~~G~~y~Fkg~~--------~wr~~~~~~~~~~P~~I~~~w~glp~~I-d-AA~~~~~~~~~yffkg~--------   78 (200)
T d1gena_          17 GIAQIRGEIFFFKDRF--------IWRTVTPRDKPMGPLLVATFWPELPEKI-D-AVYEAPQEEKAVFFAGN--------   78 (200)
T ss_dssp             EEEEETTEEEEEETTE--------EEEESSTTSCCEEEEEGGGTCTTSCSCC-S-EEEEETTTTEEEEEETT--------
T ss_pred             EEEecCCeEEEEeCCE--------EEEEcCCCCCCCCcEehhhccCCCCCCc-e-EEEEECCCCeEEEecCc--------
Confidence            5667799999996632        5655444333321 1111   1233222 1 22222  5688888774        


Q ss_pred             cEEEEECCCCcE---EEeccCCCCCCCCCCceEEE-E-cCCEEEEEcCCCCCCCCCcEEEEECCCCcEEe-----ccc-C
Q 010551          169 DVHFLDLETMTW---DAVEVTQTPPAPRYDHSAAL-H-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEI-K  237 (507)
Q Consensus       169 ~~~~~d~~t~~W---~~~~~~~~~p~~r~~~~~~~-~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~-~  237 (507)
                      ..|+|+-.+...   ..+...| +|.....--++. . .++++|+|-|       +..|+||..++.-..     +.. -
T Consensus        79 ~~~~y~~~~~~~gyPk~i~~~g-~p~~~~~iDAA~~~~~~g~~YfFkg-------~~y~ryd~~~~~vd~~yPk~I~~~w  150 (200)
T d1gena_          79 EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAW  150 (200)
T ss_dssp             EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHS
T ss_pred             eEEEEcCcccccCCCceehhcC-CCCCccceeeEEEECCCCeEEEEeC-------cEEEEeccccceeccCcceehhhcc
Confidence            367776432111   1121112 222222222333 2 5678999988       478999988765322     111 1


Q ss_pred             CCCCCCCCccEEEEE--CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          238 GDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ..+|  ..-.++...  ++++|+|-|       +..|.||..+..
T Consensus       151 ~gvp--~~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~  186 (200)
T d1gena_         151 NAIP--DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK  186 (200)
T ss_dssp             SSCC--SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred             CCCC--CCccEEEEecCCCEEEEEEC-------CEEEEEECCceE
Confidence            1223  223344443  578999866       246778765543

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.39  E-value=2.7  Score=30.38  Aligned_cols=22  Identities=9%  Similarity=0.264  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 010551          466 TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       466 ~le~e~~~~~~~~~~~~~~~~~  487 (507)
                      .++.++..+.+++..+++++++
T Consensus        76 ~l~~~i~~l~~q~~~l~~~l~~   97 (107)
T d1fxka_          76 TLQLREKTIERQEERVMKKLQE   97 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=85.03  E-value=9.4  Score=31.74  Aligned_cols=237  Identities=11%  Similarity=0.059  Sum_probs=112.5

Q ss_pred             ceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE---CCEEEEEeccCCCCCCcceEEEEECCCCcEE
Q 010551           54 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        54 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~  130 (507)
                      ++|++|+.++.-+++.....                 .  .....+   |.+|++...... ......+++++..++...
T Consensus        22 dl~~~d~~~g~~~~Lt~~~~-----------------~--~~~p~~SPDG~~iaf~~~~~~-~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2          22 DLWEHDLKSGSTRKIVSNLG-----------------V--INNARFFPDGRKIAIRVMRGS-SLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             EEEEEETTTCCEEEEECSSS-----------------E--EEEEEECTTSSEEEEEEEEST-TCCEEEEEEEETTTTEEE
T ss_pred             cEEEEECCCCCEEEEecCCC-----------------c--ccCEEECCCCCEEEEEEeeCC-CCCceEEEEEEecCCceE
Confidence            69999999988777754321                 1  111222   455655543332 222457999999999988


Q ss_pred             EeecCCCCC-CCCcCcEEEEE--CCEEEEEcCCCCCCCccCcEEEEECCCCcEEEeccCCCCCCCCCCceEEEEcCCEEE
Q 010551          131 VMETSGKVP-VTRGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLI  207 (507)
Q Consensus       131 ~~~~~g~~p-~~r~~~~~~~~--~~~iy~~GG~~~~~~~~n~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~  207 (507)
                      ++...+... ..+........  +++.+++.-..........++..+...........      .. .......++..++
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~  154 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL------GP-ATHILFADGRRVI  154 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS------CS-CSEEEEETTEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC------Cc-cceeeecCCCeEE
Confidence            886321110 11122222222  44444444333222234456666766665544321      11 1122333344344


Q ss_pred             EEcCCCCCC------CCCcEEEEECCCCcEEecccCCCCCCCCCccEEEEECCeEEEEeccCCCCCcceEEEEECCCCcE
Q 010551          208 VFGGCSHSI------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       208 v~GG~~~~~------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W  281 (507)
                      .+.......      ..............-....     ............++.++....   .....++|++|+.+..-
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~d~~g~~~  226 (281)
T d1k32a2         155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-----DMSTHVSSPVIVGHRIYFITD---IDGFGQIYSTDLDGKDL  226 (281)
T ss_dssp             EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-----CCSSCCEEEEEETTEEEEEEC---TTSSCEEEEEETTSCSC
T ss_pred             EeeccccceeeeeccCCcceeeeeccccceeecc-----CCccccceeeeeccccceecc---cccccceEEEeCCCCce
Confidence            443322111      0111222222222222211     111112222334555555432   22345799999999888


Q ss_pred             EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCCCCCCCcc
Q 010551          282 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI  340 (507)
Q Consensus       282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~w~~~~~  340 (507)
                      +.|.....        ........++...+|..+       .++|++|+....-..+.+
T Consensus       227 ~~lt~~~~--------~~~~~~SpDG~~I~f~~~-------~~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         227 RKHTSFTD--------YYPRHLNTDGRRILFSKG-------GSIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             EECCCCCS--------SCEEEEEESSSCEEEEET-------TEEEEECTTTCCEEECCC
T ss_pred             EEeecCCC--------cccccCcCCCCEEEEEeC-------CEEEEEECCCCCEEEecc
Confidence            87754321        111223445554444333       369999998776554443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.51  E-value=12  Score=31.74  Aligned_cols=106  Identities=15%  Similarity=0.116  Sum_probs=52.8

Q ss_pred             CCEEEEEcCCCCCCCCCcEEEEECCCCcEEecccCCCCCCCCCc-cEEEEE-CCeEEEEeccCCCCCcceEEEEECCCCc
Q 010551          203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG-HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       203 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~-~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~  280 (507)
                      ...+++.|+.+     ..+.+||+.+..-...-. +    .... .+++.. ++.+++.|+.++     .+.++|+....
T Consensus       195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~~-~----h~~~i~~v~~~p~~~~l~s~s~d~-----~i~~~~~~~~~  259 (340)
T d1tbga_         195 DTRLFVSGACD-----ASAKLWDVREGMCRQTFT-G----HESDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQ  259 (340)
T ss_dssp             TSSEEEEEETT-----TEEEEEETTTTEEEEEEC-C----CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTE
T ss_pred             ccceeEEeecC-----ceEEEEECCCCcEEEEEe-C----CCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeecccc
Confidence            44456655543     357888988765433210 1    1111 122222 456777776443     36788887765


Q ss_pred             EEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccCCCCcCceEEEEECCCC
Q 010551          281 WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       281 W~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  333 (507)
                      ..........      ......+.+..+..+++.|+.+    ..+.++|+...
T Consensus       260 ~~~~~~~~~~------~~~i~~~~~s~~~~~l~~g~~d----g~i~iwd~~~~  302 (340)
T d1tbga_         260 ELMTYSHDNI------ICGITSVSFSKSGRLLLAGYDD----FNCNVWDALKA  302 (340)
T ss_dssp             EEEEECCTTC------CSCEEEEEECSSSCEEEEEETT----SCEEEEETTTC
T ss_pred             cccccccccc------cCceEEEEECCCCCEEEEEECC----CEEEEEECCCC
Confidence            4332222111      1222333444444456667755    35778887543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=83.45  E-value=13  Score=32.17  Aligned_cols=206  Identities=8%  Similarity=0.004  Sum_probs=97.1

Q ss_pred             CCEEEEEeccCCCC-CCcceEEEEECCCCcEEEeecCCCCCCCCcC-cEEEEE---CCEEEEEcCCCCCCCccCcEEEEE
Q 010551          100 GTKLLILGGHYKKS-SDSMIVRFIDLETNLCGVMETSGKVPVTRGG-HSVTLV---GSRLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus       100 ~~~lyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~-~~~~~~---~~~iy~~GG~~~~~~~~n~~~~~d  174 (507)
                      +++||+........ .....+++||+.++.+......  .+..-.+ .....+   ++.+|+..+       .+.+.++|
T Consensus        28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~--~~~~~~g~P~Gl~~~~dg~~l~vad~-------~~~i~~~~   98 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP--EVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQ   98 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC--EETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEE
T ss_pred             CCCEEEEECccccccccCCEEEEEECCCCcEEEEECC--ccccCCCcceeEEEeCCCCEEEEEEC-------CCeEEEEe
Confidence            57888875432211 1234699999999988776521  1111111 122333   346777544       23588999


Q ss_pred             CCCCcEEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCC----------CCCCCCcEEEEECCCCcEEecccCCCCCCCC
Q 010551          175 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS----------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR  244 (507)
Q Consensus       175 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~----------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r  244 (507)
                      +.......+.........+.-..+++-.++.+|+..-..          .......+|++++.. +...+..  ....| 
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~--~~~~p-  174 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT--AFQFP-  174 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE--EESSE-
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC--Cccee-
Confidence            877655444332111111122334444556688752111          012233588887643 4444321  11111 


Q ss_pred             CccEEEEE--CC----eEEEEeccCCCCCcceEEEEECCCC---cEEEe-ccCCCCCCCCCCCCceEEEEEcCceEEEEE
Q 010551          245 AGHAGITI--DE----NWYIVGGGDNNNGCQETIVLNMTKL---AWSIL-TSVKGRNPLASEGLSVCSAIIEGEHHLVAF  314 (507)
Q Consensus       245 ~~~~~~~~--~~----~l~v~GG~~~~~~~~~~~~~d~~~~---~W~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~  314 (507)
                        ..++..  ++    .+|+..-     ....++.||+...   .+..+ ..++...     ......+.++.+..|||.
T Consensus       175 --NGi~~~~d~d~~~~~lyv~d~-----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-----~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         175 --NGIAVRHMNDGRPYQLIVAET-----PTKKLWSYDIKGPAKIENKKVWGHIPGTH-----EGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             --EEEEEEECTTSCEEEEEEEET-----TTTEEEEEEEEETTEEEEEEEEEECCCCS-----SCEEEEEEEBTTCCEEEE
T ss_pred             --eeeEECCCCCcceeEEEEEee-----cccceEEeeccCccccceeeEEEEccccc-----cccceeeEEecCCcEEEE
Confidence              122221  22    4666532     2346888876433   12221 2222211     011223344444456664


Q ss_pred             ccCCCCcCceEEEEECCCCC
Q 010551          315 GGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       315 GG~~~~~~~~~~~~~~~~~~  334 (507)
                      .-    ..+.|++||+....
T Consensus       243 ~~----~~g~I~~~dp~~g~  258 (314)
T d1pjxa_         243 NW----GSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EE----TTTEEEEECTTCBS
T ss_pred             Ec----CCCEEEEEeCCCCE
Confidence            21    13678999987554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=83.39  E-value=9  Score=32.77  Aligned_cols=68  Identities=18%  Similarity=0.152  Sum_probs=39.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEEccCCceeeeccccccCCCccccCCCcCCCCCccceeEEEE--CCEEEEEeccCCCCC
Q 010551           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~iyi~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~  114 (507)
                      +++.++.|+.+     +.+.+||+.+++-......+.                ...-.+++..  +..+|+.+...    
T Consensus         7 ~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~----------------~~~p~~l~~spDG~~l~v~~~~~----   61 (346)
T d1jmxb_           7 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPD----------------KFGPGTAMMAPDNRTAYVLNNHY----   61 (346)
T ss_dssp             TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSS----------------CCSSCEEEECTTSSEEEEEETTT----
T ss_pred             CCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCC----------------CCCcceEEECCCCCEEEEEECCC----
Confidence            56777777643     579999999986433222110                1111233332  35677776532    


Q ss_pred             CcceEEEEECCCCcEEE
Q 010551          115 DSMIVRFIDLETNLCGV  131 (507)
Q Consensus       115 ~~~~~~~yd~~t~~W~~  131 (507)
                        ..+.+||+.+++=..
T Consensus        62 --~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_          62 --GDIYGIDLDTCKNTF   76 (346)
T ss_dssp             --TEEEEEETTTTEEEE
T ss_pred             --CcEEEEeCccCeeee
Confidence              459999999886443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=80.99  E-value=24  Score=33.49  Aligned_cols=124  Identities=13%  Similarity=0.056  Sum_probs=69.9

Q ss_pred             eEEEECCEEEEEeccCCCCCCcceEEEEECCCCc--EEEeecCCC-----CCCCCcCcEEEEECCEEEEEcCCCCCCCcc
Q 010551           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGK-----VPVTRGGHSVTLVGSRLIIFGGEDRSRKLL  167 (507)
Q Consensus        95 ~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g~-----~p~~r~~~~~~~~~~~iy~~GG~~~~~~~~  167 (507)
                      +-+++++.||+...       .+.++.+|..|++  |+.-.....     ..........+..++++|+...       -
T Consensus        72 tPiv~~g~vyv~t~-------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------~  137 (573)
T d1kb0a2          72 TPVVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------D  137 (573)
T ss_dssp             CCEEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------T
T ss_pred             CCEEECCEEEEECC-------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------c
Confidence            34567999998754       3459999999995  875321100     0111122345666888776432       2


Q ss_pred             CcEEEEECCCCc--EEEeccCCCCCCCCCCceEEEEcCCEEEEEcCCCC-CCCCCcEEEEECCCCc--EEec
Q 010551          168 NDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH-SIFFNDLHVLDLQTNE--WSQP  234 (507)
Q Consensus       168 n~~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~i~~~d~~~~~--W~~~  234 (507)
                      ..++.+|..+++  |+.-...+.........+.+++ ++ .+|+|+... ......|..||..|++  |+.-
T Consensus       138 g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cceeeeccccccceecccCccCCcceEEeecceEEE-ec-cEEEeeccccccccceEEEEecCCccceeeee
Confidence            358999988876  7765332211111111222334 55 445565432 2334579999999986  7753