Citrus Sinensis ID: 010557

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MMSRKSTSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDLDLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHRAVVLNQQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSAF
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEcccccEEEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccHHcccccccccccccccccHccccccHccccccHHHHcccHHHcccccccccccccccccccHHccccccccccccccccccccccccccccHHHHcccccccccccccccccEEccccccHHHEcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHccccccccccccccHHHcccccccccccccccccccEEEcccccccccccEccccccccccccEEEEccccccHHHHHHHHHHccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHcccccccEEEccccccEEccccccccccEEEEEHHHHHHHHEcccccEEEcccccccccccc
Coil and Loop (DISEMBL)
mmsrkstsfsisvpydiqnnspcnvkvmshespvipigvepaeiayegedeheetssikrdfsdldlqahdanvgkeefdlrntksdyfttaspevnaqsvngaekdakkgidmiqsghlsdpgvgrtefwaspklkrscsnlESRLVLNKltdrlppsksqsFEELQELSEKVRenyhsgspmsvtshfsADRVMLkkhsssqilpsrsRRLWWKLFLWSHrnlhkpwilkpqphravvlnqqggytsdtlepnqatklsktespgsctgeslnkgcngsynedrqswdgfqnevsavwpqrqwvafpaesssfkrVDEWVKDlgmetpfeddevaegvifppspetgksparstahltrrseinlseeILHANSVIRSLNSSSAVAHIAGIGlkaiptishfsslrsvnlsnnfivhiptgsmpkglhtlnlsRNKINTIEGLREMTRLRVLdlsynrifrighgnilskpVFWLSFKLFEFLtiipnckrlscnlynskshsaf
Flexible Loop (DISEMBL)
mmsrkstsfsisvpyDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDLDLQAHDAnvgkeefdlrnTKSDYFttaspevnaqsvnGAEKDAKKGIDMIQsghlsdpgvgRTEFWaspklkrscsnleSRLVLNkltdrlppsksqsFEELQELSEKVRENYHSGSPMSVTSHFSADRVMLKKhsssqilpsrsrRLWWKLFLWSHRNLHKPWILKPQPHRAVVLNQQGGYTSDTLEPNQatklsktespgsctgeslnKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVafpaesssfkrVDEWVKDLGMetpfeddevAEGVifppspetgksparstaHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTgsmpkglhtlnLSRNKINtieglremtrlRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNckrlscnlynskshsaf
Low Complexity Region (SEG)
MMSRKSTSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDLDLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPsksqsfeelqelsekVRENYHSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHRAVVLNQQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSAF
Disordered region (IsUnstruct)
*********************************************************************************************************************************FW*******************************************************************************RRLWWKLFLWSHRNLHKPWILKPQPHRAVVLN**********************************************WDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGME******************************************ILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLY********
Disordered Region (DISOPRED)
***********SVPYDIQNNSPCNVKVMSHESPVIP*************************FSDLDLQA*************************************************************W************************************************************A********************LWWKLFLWSHRN********************************************************************************WVAFPAESSSFKRVDEWVKDLGMETPFEDDEVA**************************EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNS******
Disordered Region (DISEMBL)
**********ISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYE**********IKRDFSDLDLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSPMSVTSHFSADRVM**********PSRSRRLWWKLFLWSHRNLHKPWILKPQPHRAVVLNQQGGYTSDTLEPN*****************SLNKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSP*************TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSAF
Disordered Region (DISPRO)
*****STSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGE**************************************YFT**SPE*NA***********KG******GHLSDPGVGRTEFWASPKLKRSC*************************************************************SSQILPSRSRRLWWKLFLWSHRNLH****************************N*ATK*****************GCN*****DRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMET***********************************INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYN*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSRKSTSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDLDLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHRAVVLNQQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
Q940K0	889	Probable disease resistan	no	no	0.142	0.080	0.418	3e-06
Q69ZB0	1026	Leucine-rich repeat and c	yes	no	0.203	0.100	0.375	1e-05
Q7PK92	910	Dynein assembly factor 1,	no	no	0.175	0.097	0.352	0.0001
Q6NRC9	1030	Leucine-rich repeat and c	N/A	no	0.116	0.057	0.390	0.0002
Q9D2H9	634	Dynein assembly factor 1,	no	no	0.132	0.105	0.414	0.0002
Q3SYS4	643	Dynein assembly factor 1,	no	no	0.132	0.104	0.385	0.0002
Q9C099	1032	Leucine-rich repeat and c	yes	no	0.138	0.067	0.365	0.0002
Q8NEP3	725	Dynein assembly factor 1,	no	no	0.132	0.092	0.385	0.0003
B6D5P3	622	Dynein assembly factor 1,	N/A	no	0.167	0.136	0.357	0.0003
B6D5P1	622	Dynein assembly factor 1,	N/A	no	0.167	0.136	0.357	0.0004

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREM 448
           AG+GL  IP +  + ++R ++L +N I  I   S    L TL L  NK+  + G  +R M
Sbjct: 497 AGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYM 556

Query: 449 TRLRVLDLSYNRIF 462
            +L VLDLSYNR F
Sbjct: 557 QKLVVLDLSYNRDF 570

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69ZB0|LRCC1_MOUSE Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Lrrcc1 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 9/112 (8%)

Query: 372 LHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHT 431
           LH+ S + SL+SS    ++    +  I +I H  +LR ++LS+N I  I   +    L T
Sbjct: 28  LHSISEL-SLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCT 86

Query: 432 LNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILS--KPVFWLSFKL 481
           LNLS N I  +EGL  +  L  L+LSYN      H N LS   P+  L +KL
Sbjct: 87  LNLSCNLITRVEGLEALVNLTKLNLSYN------HINDLSGLMPLHGLKYKL 132

Required for the organization of the mitotic spindle. Maintains the structural integrity of centrosomes during mitosis.

Mus musculus (taxid: 10090)

>sp|Q7PK92|DAAF1_ANOGA Dynein assembly factor 1, axonemal homolog OS=Anopheles gambiae GN=AGAP009594 PE=3 SV=2

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 13/102 (12%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIP-TGS--MPKGLHTLNLSRNKINTIEGLREMTR- 450
           +K I  + H   L ++NLS+N I  I   GS  +P  L+TLN+S N + +IE L E+ + 
Sbjct: 76  IKKIENLQHCKQLDTLNLSHNHIAKIENCGSDILP-VLNTLNISHNYLKSIESLAELRKC 134

Query: 451 --LRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPN 490
             + VLD+S+NRI  I    +L+        K    LT++ N
Sbjct: 135 DFVSVLDISHNRIEDIAIVKVLA------DMKGLRVLTLVGN 170

Cilium-specific protein required for cilia structures.

Anopheles gambiae (taxid: 7165)

>sp|Q6NRC9|LRCC1_XENLA Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Xenopus laevis GN=lrrcc1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           I  + H   L+ ++LS+N I  I        L +LNLS NK+  +EGL ++  L+ L+LS
Sbjct: 43  IEGLRHLCYLQHLDLSSNLITKIEGLDSLASLQSLNLSCNKLTRVEGLEKLFNLKKLNLS 102

Query: 458 YNRI 461
           YN I
Sbjct: 103 YNSI 106

Required for the organization of the mitotic spindle. Maintains the structural integrity of centrosomes during mitosis.

Xenopus laevis (taxid: 8355)

>sp|Q9D2H9|DAAF1_MOUSE Dynein assembly factor 1, axonemal OS=Mus musculus GN=Dnaaf1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT---IEGLREMTRL 451
           L  I  +     L ++NLSNN+I  I   S    L+TL ++ N++ T   IE LRE  RL
Sbjct: 157 LHKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNRLETVADIEHLRECLRL 216

Query: 452 RVLDLSYNRI 461
            VLDLS+N +
Sbjct: 217 CVLDLSHNAL 226

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Mus musculus (taxid: 10090)

>sp|Q3SYS4|DAAF1_BOVIN Dynein assembly factor 1, axonemal OS=Bos taurus GN=DNAAF1 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMTRL 451
           L  I  +     L ++N+SNN+I  I   S    L+TL ++ N + T+E    LRE  RL
Sbjct: 163 LHKIENLEPLQKLDALNISNNYIKTIENLSCLPVLNTLQMAHNHLETVEDIQHLRECARL 222

Query: 452 RVLDLSYNRI 461
            VLDLS+N++
Sbjct: 223 CVLDLSHNKL 232

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Bos taurus (taxid: 9913)

>sp|Q9C099|LRCC1_HUMAN Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=LRRCC1 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%)

Query: 380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439
           SL+S+    ++    +  I  I H  +L+ ++LS+N I  I   +    L TLNLS N I
Sbjct: 40  SLDSTLHAVNLHCNNISKIEAIDHIWNLQHLDLSSNQISRIEGLNTLTKLCTLNLSCNLI 99

Query: 440 NTIEGLREMTRLRVLDLSYNRI 461
             +EGL E+  L  L++SYN I
Sbjct: 100 TKVEGLEELINLTRLNVSYNHI 121

Required for the organization of the mitotic spindle. Maintains the structural integrity of centrosomes during mitosis.

Homo sapiens (taxid: 9606)

>sp|Q8NEP3|DAAF1_HUMAN Dynein assembly factor 1, axonemal OS=Homo sapiens GN=DNAAF1 PE=1 SV=5

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMTRL 451
           L+ I  +     L ++NLSNN+I  I   S    L+TL ++ N + T+E    L+E  RL
Sbjct: 163 LRKIENLEPLQKLDALNLSNNYIKTIENLSCLPVLNTLQMAHNHLETVEDIQHLQECLRL 222

Query: 452 RVLDLSYNRI 461
            VLDLS+N++
Sbjct: 223 CVLDLSHNKL 232

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms. Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Homo sapiens (taxid: 9606)

>sp|B6D5P3|DAAF1_PERLE Dynein assembly factor 1, axonemal OS=Peromyscus leucopus GN=Dnaaf1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 370 EILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGL 429
           E L A S +R L     + H        I  +     L ++NLSNN+I  I   S    L
Sbjct: 139 ENLQAQSELRCLFLQVNLLH-------KIENLEPLQKLDALNLSNNYIKTIENLSCLPVL 191

Query: 430 HTLNLSRNKINT---IEGLREMTRLRVLDLSYNRI 461
           +TL ++ N++ T   I+ LRE  RL VLDLS+N +
Sbjct: 192 NTLQMAHNRLETVADIQHLRECLRLCVLDLSHNML 226

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Peromyscus leucopus (taxid: 10041)

>sp|B6D5P1|DAAF1_PERPL Dynein assembly factor 1, axonemal OS=Peromyscus polionotus GN=Dnaaf1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 370 EILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGL 429
           E L A S +R L     + H        I  +     L ++NLSNN+I  I   S    L
Sbjct: 139 ENLQAQSELRCLFLQVNLLH-------KIENLEPLQKLDALNLSNNYIKTIENLSCLPVL 191

Query: 430 HTLNLSRNKINT---IEGLREMTRLRVLDLSYNRI 461
           +TL ++ N++ T   I+ LRE  RL VLDLS+N +
Sbjct: 192 NTLQMAHNRLETVADIQHLRECLRLCVLDLSHNML 226

Cilium-specific protein required for the stability of the ciliary architecture. Plays a role in cytoplasmic preassembly of dynein arms (By similarity). Involved in regulation of microtubule-based cilia and actin-based brush border microvilli.

Peromyscus polionotus (taxid: 42413)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
225459284	685	PREDICTED: uncharacterized protein LOC10	0.889	0.658	0.682	1e-177
147789010	774	hypothetical protein VITISV_009732 [Viti	0.865	0.567	0.654	1e-167
255545744	686	protein binding protein, putative [Ricin	0.891	0.658	0.619	1e-154
302141965	612	unnamed protein product [Vitis vinifera]	0.765	0.633	0.594	1e-144
224084652	602	predicted protein [Populus trichocarpa]	0.830	0.699	0.623	1e-142
449437014	674	PREDICTED: uncharacterized protein LOC10	0.875	0.658	0.597	1e-140
449527887	676	PREDICTED: uncharacterized LOC101212929	0.879	0.659	0.588	1e-139
356508089	670	PREDICTED: uncharacterized protein LOC10	0.897	0.679	0.561	1e-135
224063241	541	predicted protein [Populus trichocarpa]	0.710	0.665	0.652	1e-128
356518469	667	PREDICTED: uncharacterized protein LOC10	0.899	0.683	0.551	1e-128

>gi|225459284|ref|XP_002285786.1| PREDICTED: uncharacterized protein LOC100252301 [Vitis vinifera]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 320/469 (68%), Positives = 364/469 (77%), Gaps = 18/469 (3%)

Query: 6   STSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDL 65
           +TSFS+SVP+DI+ +S C VKVMSHESP   I  E  E+AYEGEDEHE+ SSIKR+ SD 
Sbjct: 55  TTSFSVSVPFDIKGSSTCKVKVMSHESP---IEGEAVEVAYEGEDEHEDNSSIKRELSDF 111

Query: 66  DLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGV 125
           DLQ H AN G+EEF LR+   +Y  +   EVN Q  + AEKDA+KG+DMIQ+GH+SDPG+
Sbjct: 112 DLQTHVANAGEEEFQLRHRNMNYSDSFDIEVNGQFEDRAEKDAEKGVDMIQNGHVSDPGI 171

Query: 126 GRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENY---HSGS 182
            + +FWASPKLKRSCSNLESR VL K+  +LPPSKS SFEELQ L++  RE+    + GS
Sbjct: 172 PKADFWASPKLKRSCSNLESRDVLKKIAGQLPPSKSHSFEELQGLADGAREDVFPRNPGS 231

Query: 183 PMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHR-AVVL 241
           P SV S  SADRVMLKK SSSQ+LPSRSRRLWWKLFLWSHRNLHKPW  KP+P   A   
Sbjct: 232 PGSVLSRRSADRVMLKKRSSSQVLPSRSRRLWWKLFLWSHRNLHKPWTTKPRPLPIAAAF 291

Query: 242 NQQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWP 301
           NQQGGY SDTLEPN+A +LS+ ESPGS TG +        +  D QSWDGF    S +WP
Sbjct: 292 NQQGGYCSDTLEPNRALQLSELESPGSFTGNN--------HPNDNQSWDGFHGRTSGLWP 343

Query: 302 QRQWVAFPAESSSFKRVDEWVKDLGMETPF---EDDEVAEGVIFPPSPETGKSPARSTAH 358
           Q  WVAF AESS F RVDEWVKDL  + P     DD   E +IFPPSPETG+SPARSTAH
Sbjct: 344 QNHWVAFSAESSPFARVDEWVKDLETQPPLPVDNDDNNVEDIIFPPSPETGRSPARSTAH 403

Query: 359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIV 418
           LTR    NLSEEILHANSVI+SLNSSS VAHI+GIGLK IPTISHFSSLRSVNLS+N+IV
Sbjct: 404 LTRHPNTNLSEEILHANSVIQSLNSSSTVAHISGIGLKVIPTISHFSSLRSVNLSSNYIV 463

Query: 419 HIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           HI  GS+PKGLH LNLSRNKI+TIEGLRE+TRLRVLDLSYNRI RIGHG
Sbjct: 464 HITPGSLPKGLHILNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGHG 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789010|emb|CAN62584.1| hypothetical protein VITISV_009732 [Vitis vinifera]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/469 (65%), Positives = 351/469 (74%), Gaps = 30/469 (6%)

Query: 6   STSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDL 65
           +TSFS+SVP+D+Q       +V               E+AYEGEDEHE+ SSIKR+ SD 
Sbjct: 156 TTSFSVSVPFDMQGEFYMQGQV---------------EVAYEGEDEHEDNSSIKRELSDF 200

Query: 66  DLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGV 125
           DLQ H AN G+EEF LR+   +Y  +   EVN Q  + AEKDA+KG+DMIQ+GH+SDPG+
Sbjct: 201 DLQTHVANAGEEEFQLRHRNMNYSDSFDIEVNGQFEDRAEKDAEKGVDMIQNGHVSDPGI 260

Query: 126 GRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENY---HSGS 182
            + +FWASPKLKRSCSNLESR VL K+  +LPPSKS SFEELQ L++  RE+    + GS
Sbjct: 261 PKADFWASPKLKRSCSNLESRDVLKKIAGQLPPSKSHSFEELQGLADGAREDVFXRNPGS 320

Query: 183 PMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHR-AVVL 241
           P SV S  SADRVMLKK SSSQ+LPSRSRRLWWKLFLW HRNLHKPW  KP+P   A   
Sbjct: 321 PGSVLSRRSADRVMLKKRSSSQVLPSRSRRLWWKLFLWXHRNLHKPWTTKPRPLPIAAAF 380

Query: 242 NQQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWP 301
           NQQGGY SDTLEPN+A +LS+ ESPGS TG +        +  D QSWDGF    S +WP
Sbjct: 381 NQQGGYCSDTLEPNRALQLSELESPGSFTGNN--------HPNDNQSWDGFHGRTSGLWP 432

Query: 302 QRQWVAFPAESSSFKRVDEWVKDLGMETPF---EDDEVAEGVIFPPSPETGKSPARSTAH 358
           Q  WVAF AESS F RVDEWVKDL  + P     DD   E +IFPPSPETG+SPARSTAH
Sbjct: 433 QNHWVAFSAESSPFARVDEWVKDLETQPPLPVDNDDNNVEDIIFPPSPETGRSPARSTAH 492

Query: 359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIV 418
           LTR    NLSEEILHANSVI+SLNSSS VAHI+GIGLK IPTISHFSSLRSVNLS+N+IV
Sbjct: 493 LTRHPNTNLSEEILHANSVIQSLNSSSTVAHISGIGLKVIPTISHFSSLRSVNLSSNYIV 552

Query: 419 HIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           HI  GS+PKGLH LNLSRNKI+TIEGLRE+TRLRVLDLSYNRI RIGHG
Sbjct: 553 HITPGSLPKGLHILNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGHG 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545744|ref|XP_002513932.1| protein binding protein, putative [Ricinus communis] gi|223547018|gb|EEF48515.1| protein binding protein, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 291/470 (61%), Positives = 352/470 (74%), Gaps = 18/470 (3%)

Query: 6   STSFSISVPYDIQNNSP---CNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDF 62
           +TSFS+SV   + + +P    +VKVMSHES V   G E +EIAYEGEDE EE +S+KR+ 
Sbjct: 54  TTSFSVSVD-SVPSGTPKDSSSVKVMSHESLV---GNEASEIAYEGEDEQEENASMKREL 109

Query: 63  SDLDLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSD 122
           SD DLQAH  N   E+F   +  S Y      + N    + AEKD +K  D IQ+GH+SD
Sbjct: 110 SDFDLQAHTPN-SSEQFIPGSINSSYSDLLDIKDNDPLGDKAEKDNEKDTDEIQTGHVSD 168

Query: 123 PGVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGS 182
           PG+G+ +FW SPKLKRSCSNLE+  VL++   +  PSK Q   E  EL  K+R   + GS
Sbjct: 169 PGIGKAKFWGSPKLKRSCSNLETSKVLSEKAYQSTPSKFQFSGESLELDVKLR---NPGS 225

Query: 183 PMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHRAVVLN 242
           P SVTSH +ADRVMLKKHSSSQILPSRSR+LWWKLFLWSHRN+H+P   +P+P    VLN
Sbjct: 226 PSSVTSHQTADRVMLKKHSSSQILPSRSRKLWWKLFLWSHRNMHRPE--QPKPQVVTVLN 283

Query: 243 QQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWPQ 302
           QQ GYTSDT+EP++A  +S T+SP S TGESL+KGC  +  +D QSWDGF  EVS +WPQ
Sbjct: 284 QQCGYTSDTVEPSRALAMSNTQSPRSFTGESLSKGCKNNNEDDNQSWDGFHGEVSGIWPQ 343

Query: 303 RQWVAFPAESSSFKRVDEWVKDLGMETPFEDD-----EVAEGVIFPPSPETGKSPARSTA 357
           +QWVAF  E+S F RVDEWVKDL  + P   D        EG++FPPSPE G+SPAR T+
Sbjct: 344 KQWVAFSMETSPFARVDEWVKDLDTQAPPNSDGNGAGTSGEGIVFPPSPEAGRSPARGTS 403

Query: 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI 417
           +LTRR +INLSEEILHAN+VI+SL++SS VAHI+GIGLKAIPTIS F+SLRSVNLSNNFI
Sbjct: 404 NLTRRPDINLSEEILHANAVIQSLDASSTVAHISGIGLKAIPTISCFTSLRSVNLSNNFI 463

Query: 418 VHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           V I  GS+PKGLHTLNLSRNKI++IEGLRE+TRLRVL+LSYNRI RIG G
Sbjct: 464 VSISPGSLPKGLHTLNLSRNKISSIEGLRELTRLRVLNLSYNRISRIGQG 513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141965|emb|CBI19168.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 279/469 (59%), Positives = 315/469 (67%), Gaps = 81/469 (17%)

Query: 6   STSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDL 65
           +TSFS+SVP+DI+ +S C VKVMSHESP   I  E  E+AYEGEDEHE+ SSIKR+ SD 
Sbjct: 55  TTSFSVSVPFDIKGSSTCKVKVMSHESP---IEGEAVEVAYEGEDEHEDNSSIKRELSDF 111

Query: 66  DLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGV 125
           DLQ H AN G+EEF LR+   +Y  +                       I++GH+SDPG+
Sbjct: 112 DLQTHVANAGEEEFQLRHRNMNYSDSFD---------------------IENGHVSDPGI 150

Query: 126 GRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENY---HSGS 182
            + +FWASPKLKRSCSNLESR                       L++  RE+    + GS
Sbjct: 151 PKADFWASPKLKRSCSNLESR---------------------DGLADGAREDVFPRNPGS 189

Query: 183 PMSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHR-AVVL 241
           P SV S  SADRVMLKK SSSQ+LPSRSRRLWWKLFLWSHRNLHKPW  KP+P   A   
Sbjct: 190 PGSVLSRRSADRVMLKKRSSSQVLPSRSRRLWWKLFLWSHRNLHKPWTTKPRPLPIAAAF 249

Query: 242 NQQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWP 301
           NQQGGY SDTLEPN+A                               WDGF    S +WP
Sbjct: 250 NQQGGYCSDTLEPNRALH-----------------------------WDGFHGRTSGLWP 280

Query: 302 QRQWVAFPAESSSFKRVDEWVKDLGMETPF---EDDEVAEGVIFPPSPETGKSPARSTAH 358
           Q  WVAF AESS F RVDEWVKDL  + P     DD   E +IFPPSPETG+SPARSTAH
Sbjct: 281 QNHWVAFSAESSPFARVDEWVKDLETQPPLPVDNDDNNVEDIIFPPSPETGRSPARSTAH 340

Query: 359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIV 418
           LTR    NLSEEILHANSVI+SLNSSS VAHI+GIGLK IPTISHFSSLRSVNLS+N+IV
Sbjct: 341 LTRHPNTNLSEEILHANSVIQSLNSSSTVAHISGIGLKVIPTISHFSSLRSVNLSSNYIV 400

Query: 419 HIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           HI  GS+PKGLH LNLSRNKI+TIEGLRE+TRLRVLDLSYNRI RIGHG
Sbjct: 401 HITPGSLPKGLHILNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGHG 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084652|ref|XP_002307375.1| predicted protein [Populus trichocarpa] gi|222856824|gb|EEE94371.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/451 (62%), Positives = 331/451 (73%), Gaps = 30/451 (6%)

Query: 28  MSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSDLDLQAHDANVGKE---EFDLRNT 84
           MSHESPV+       E AYEGEDE EE  S+KRD SDLDLQ+H AN G+E       R  
Sbjct: 1   MSHESPVV------NEAAYEGEDELEEDVSMKRDLSDLDLQSHVANSGEEVSCPISARLD 54

Query: 85  KSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPGVGRTEFWASPKLKRSCSNLE 144
            SD       E  A+     +K  +KGID+IQSGH+SDPG+G+ EFW SPKLKRSCSNLE
Sbjct: 55  SSDSLDRMGNERYAKKD--EKKVDEKGIDVIQSGHVSDPGIGKAEFWGSPKLKRSCSNLE 112

Query: 145 SRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSPMSVTSHFSADRVMLKKHSSSQ 204
           +   L K+ ++LP + SQ  EELQ L+EK+R+     SP S+ SH SADRVMLKKHSSSQ
Sbjct: 113 TSKFLRKIANQLPLA-SQYSEELQGLAEKLRDPR---SPTSIISHCSADRVMLKKHSSSQ 168

Query: 205 ILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHR-AVVLNQQGGYTSDTLEPNQATKLSKT 263
           +LPSRSRRLWWKLFLWSHRNLHKPW +KPQP   + VLNQQGGY+SDTLE ++A  LSK 
Sbjct: 169 VLPSRSRRLWWKLFLWSHRNLHKPWYVKPQPQAVSKVLNQQGGYSSDTLELDRA--LSKM 226

Query: 264 ESPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVK 323
           +SPGS T ES+NKG   +  ED QSW+GF   +S +WPQ QWVAF  ESS F RV++WV+
Sbjct: 227 QSPGSFTRESMNKG-RINNEEDSQSWNGFHAGISGLWPQNQWVAFSIESSPFSRVNKWVE 285

Query: 324 DLGMETP-------FEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANS 376
           DL  + P         D +    ++F PSP+TG+SP R+TA      + N SEEILHANS
Sbjct: 286 DLETQPPPPDAHDDNNDVKSDNDIVFLPSPDTGRSPGRTTAC----PDFNFSEEILHANS 341

Query: 377 VIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR 436
           VI+SLNSSS VAHIAGIGLKAIPTISHFSSLRSVNLSNN IVHI  GS+PKGLHTLNLS+
Sbjct: 342 VIQSLNSSSTVAHIAGIGLKAIPTISHFSSLRSVNLSNNVIVHITPGSLPKGLHTLNLSK 401

Query: 437 NKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           N+I TIEGLR++ RLRVLDLSYNRIFR+G G
Sbjct: 402 NRIGTIEGLRDLIRLRVLDLSYNRIFRLGQG 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437014|ref|XP_004136287.1| PREDICTED: uncharacterized protein LOC101212929 [Cucumis sativus]

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/469 (59%), Positives = 328/469 (69%), Gaps = 25/469 (5%)

Query: 5   KSTSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSD 64
           KS++  +++ Y  +NNS  +VKV +HESP +   VE AE  YEGEDE ++ +SIKR+ SD
Sbjct: 53  KSSTLDVAILYPSENNSKLDVKVTNHESPTVGGAVE-AE--YEGEDERDD-NSIKRNPSD 108

Query: 65  LDLQAHDANVGKE-EFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDP 123
            DL A D N G+E EF L     D  T          V G   DA      IQ+GHLSDP
Sbjct: 109 FDLPAQD-NCGEEFEFQLLGNHFDKITIEGEGGEGIGVEGEGVDAS-----IQNGHLSDP 162

Query: 124 GVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSP 183
           G+G+   WASPKLKRSCSNLE+R VL  L+ +LPP KSQSFE+LQEL+ ++R+    GSP
Sbjct: 163 GIGKAVCWASPKLKRSCSNLETRDVLRDLSHQLPPPKSQSFEKLQELANEMRDYVDPGSP 222

Query: 184 MSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHRAVVLNQ 243
            S  +H SAD+VMLKK SSSQILPSRSRRLWWKLFLWSHRNL KPW +K  P  +   NQ
Sbjct: 223 GSTMTHRSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTIKATP-TSSAFNQ 281

Query: 244 QGGYTSDTLEPNQATKLSKTESPGSCTGESLNKG-CNGSYNEDRQSWDGFQNEVSAVWPQ 302
           QGGY SD LEPN+A   S  ESPGS T ES   G CN     D Q  +   N VS +WPQ
Sbjct: 282 QGGYCSDNLEPNRAAGKSMIESPGSFTEESWTNGPCNN--KSDDQDQEKLCNGVSGLWPQ 339

Query: 303 RQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVA----EGVIFPPSPETGKSPARSTAH 358
            QWVAF AESSS +RVDEWVKDL +E     DEV     E  +FPPSPE      R++ H
Sbjct: 340 NQWVAFSAESSSLRRVDEWVKDLQIEPCITIDEVGGDNDEATVFPPSPE------RTSTH 393

Query: 359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIV 418
             RR E NL+EEIL+ANSVI+SLNSSS VAHI+GIGL+AIPTISH S LRSVNLS N I+
Sbjct: 394 TPRRGETNLTEEILYANSVIQSLNSSSTVAHISGIGLRAIPTISHLSGLRSVNLSGNLIL 453

Query: 419 HIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           HI  GS+PKGLHTLNLSRNKI+ IEGL+E+TRLR+LDLSYNRI RIGHG
Sbjct: 454 HINPGSLPKGLHTLNLSRNKISVIEGLKELTRLRILDLSYNRISRIGHG 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527887|ref|XP_004170940.1| PREDICTED: uncharacterized LOC101212929 [Cucumis sativus]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/469 (58%), Positives = 327/469 (69%), Gaps = 23/469 (4%)

Query: 5   KSTSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSD 64
           KS++  +++ Y  +NNS  +VKV +HESP +   VE AE  YEGEDE ++ +SIKR+ SD
Sbjct: 53  KSSTLDVAILYPSENNSKLDVKVTNHESPTVGGAVE-AE--YEGEDERDD-NSIKRNPSD 108

Query: 65  LDLQAHDANVGKE-EFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDP 123
            DL A D N G+E EF L     D  T        + +    +     I   Q+GHLSDP
Sbjct: 109 FDLPAQD-NCGEEFEFQLLGNHFDKITIEGEGEGGEGIGVEGEGVDASI---QNGHLSDP 164

Query: 124 GVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSP 183
           G+G+   WASPKLKRSCSNLE+R VL  L+ +LPP KSQSFE+LQEL+ ++R+    GSP
Sbjct: 165 GIGKAVCWASPKLKRSCSNLETRDVLRDLSHQLPPPKSQSFEKLQELANEMRDYVDPGSP 224

Query: 184 MSVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILKPQPHRAVVLNQ 243
            S  +H SAD+VMLKK SSSQILPSRSRRLWWKLFLWSHRNL KPW +K  P  +   NQ
Sbjct: 225 GSTMTHRSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTIKATP-TSSAFNQ 283

Query: 244 QGGYTSDTLEPNQATKLSKTESPGSCTGESLNKG-CNGSYNEDRQSWDGFQNEVSAVWPQ 302
           QGGY SD LEPN+A   S  ESPGS T ES   G CN     D Q  +   N VS +WPQ
Sbjct: 284 QGGYCSDNLEPNRAAGKSMIESPGSFTEESWTNGPCNN--KSDDQDQEKLCNGVSGLWPQ 341

Query: 303 RQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVA----EGVIFPPSPETGKSPARSTAH 358
            QWVAF AESSS +RVDEWVKDL +E     DEV     E  +FPPSPE      R++ H
Sbjct: 342 NQWVAFSAESSSLRRVDEWVKDLQIEPCITIDEVGGDNDEATVFPPSPE------RTSTH 395

Query: 359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIV 418
             RR E NL+EEIL+ANSVI+SLNSSS VAHI+GIGL+AIPTISH S LRSVNLS N I+
Sbjct: 396 TPRRGETNLTEEILYANSVIQSLNSSSTVAHISGIGLRAIPTISHLSGLRSVNLSGNLIL 455

Query: 419 HIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           HI  GS+PKGLHTLNLSRNKI+ IEGL+E+TRLR+LDLSYNRI RIGHG
Sbjct: 456 HINPGSLPKGLHTLNLSRNKISVIEGLKELTRLRILDLSYNRISRIGHG 504

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508089|ref|XP_003522793.1| PREDICTED: uncharacterized protein LOC100813969 [Glycine max]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/472 (56%), Positives = 320/472 (67%), Gaps = 17/472 (3%)

Query: 5   KSTSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSD 64
           K  +  + VP  +Q NS  NV+VM+ ESPV        E AYEGEDEHEE+ SIKR+ SD
Sbjct: 48  KPATLDVPVPSGVQKNSRGNVRVMNLESPV----KTEVEEAYEGEDEHEESPSIKRELSD 103

Query: 65  LDLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPG 124
            DLQ  +    K  +D  + +  Y +    + N Q  +   + +KK  D+IQSGH+SDPG
Sbjct: 104 FDLQVLEVAASKGGYDPSSEEIKYPSLYENQANIQLEDKDHEYSKKSCDIIQSGHVSDPG 163

Query: 125 VGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSPM 184
           +G+ EF ASPKLKRSCS+LE R VL +     P SKSQSFE+LQ LS     N  S  P 
Sbjct: 164 IGKAEFCASPKLKRSCSDLERRDVLRETCHLFPSSKSQSFEDLQGLSAHQMVNLES--PR 221

Query: 185 SVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWILK-PQPH-RAVVLN 242
           SV +H SADRVMLK+HSSSQ+LPSRS+RLWWKLFLWSHRN+H+  + K  Q H     LN
Sbjct: 222 SVMTHRSADRVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRSQLSKSTQIHPVTAALN 281

Query: 243 QQGGYTSDTLEPNQATKLSKTES--PGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVW 300
            Q GY+SDTLEP Q   LS  ES  P S  GE   K C+   N D Q W  FQ +    W
Sbjct: 282 SQCGYSSDTLEPKQDKALSHVESHSPSSSFGEYFQKSCD-DRNFDNQRWSRFQKDNFGFW 340

Query: 301 PQRQWVAFPAESSSFKRVDEWVKDLGMETP-----FEDDEVAEGVIFPPSPETGKSPARS 355
           PQ QWVAF  ESSS+ RVDEWVKDL ++ P     F DD +   + FPPSP+ G+S ARS
Sbjct: 341 PQNQWVAFSTESSSYSRVDEWVKDLEIQQPPLEDDFNDDNIG-SIAFPPSPDDGRSMARS 399

Query: 356 TAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNN 415
           TA L +  + NLS+EIL+ANSV++SLN +S  AHI+ IG+KAIP++SHF SLR VNLSNN
Sbjct: 400 TAQLIQHPDANLSKEILNANSVVQSLNPASTAAHISSIGIKAIPSLSHFFSLRCVNLSNN 459

Query: 416 FIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
            IVHI  G +PKG+HTLNLSRNKI+TIEGLRE+TRLRVLDLSYNRI RIG G
Sbjct: 460 LIVHITPGFLPKGIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQG 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063241|ref|XP_002301057.1| predicted protein [Populus trichocarpa] gi|222842783|gb|EEE80330.1| predicted protein [Populus trichocarpa]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/380 (65%), Positives = 288/380 (75%), Gaps = 20/380 (5%)

Query: 97  NAQSVNGAEKDA-KKGIDMIQSGHLSDPGVGRTEFWASPKLKRSCSNLESRLVLNKLTDR 155
           N Q    AEK   +KGI +IQSGH+SDPG+G+ EFW SPKLKRSCSNLE+  VL K+  +
Sbjct: 3   NEQYAKKAEKKVDEKGIHVIQSGHVSDPGIGKAEFWGSPKLKRSCSNLETSKVLRKIAAQ 62

Query: 156 LPPSKSQSFEELQELSEKVRENYHSGSPMSVTSHFSADRVMLKKHSSSQILPSRSRRLWW 215
            P + SQ  EELQ L+EKVR+     SP SV S  SADRVMLKKHSSSQ+LPSRSRRLWW
Sbjct: 63  FPLT-SQDSEELQGLAEKVRD---PSSPTSVISRRSADRVMLKKHSSSQVLPSRSRRLWW 118

Query: 216 KLFLWSHRNLHKPWILKP-QPHRAVVLNQQGGYTSDTLEPNQATKLSKTESPGSCTGESL 274
           KLFLWSHRNLHKPW +KP QP  + +L+QQGGY+SDTLEPN+A  +SK +SP S T +S+
Sbjct: 119 KLFLWSHRNLHKPWFVKPLQPAVSKLLSQQGGYSSDTLEPNRA--MSKMQSPRSFTVKSM 176

Query: 275 NKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGME-TPFE- 332
           +KG N +  ED QSW+ F   +S +WPQ QWVAF  ESS F RVDEWVKDL    +P + 
Sbjct: 177 DKGHNNN-EEDSQSWNSFHAGISGLWPQNQWVAFSVESSPFSRVDEWVKDLETHPSPLDA 235

Query: 333 -----DDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAV 387
                D    + ++FPPSP+TG+SP R+      R + NLS EILHANSVI+SLNSSS V
Sbjct: 236 YDNNNDVRGDDDIVFPPSPDTGRSPRRAMT----RPDFNLSVEILHANSVIQSLNSSSTV 291

Query: 388 AHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLRE 447
           AHI+G GLKAIPT S FSSLRSVNLSNNFIV I  GS+PKGLHTLNLSRNKINTIEGLRE
Sbjct: 292 AHISGNGLKAIPTTSRFSSLRSVNLSNNFIVQITPGSLPKGLHTLNLSRNKINTIEGLRE 351

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           +TRLRVLDLSYNRI RIG G
Sbjct: 352 LTRLRVLDLSYNRISRIGQG 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518469|ref|XP_003527901.1| PREDICTED: uncharacterized protein LOC100810094 [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/473 (55%), Positives = 317/473 (67%), Gaps = 17/473 (3%)

Query: 5   KSTSFSISVPYDIQNNSPCNVKVMSHESPVIPIGVEPAEIAYEGEDEHEETSSIKRDFSD 64
           K  +  ++VP  +Q NS  NV+VMS ESPV        E AYEGEDEHEE+ SIKR+ SD
Sbjct: 43  KPATVDVTVPSGVQKNSRGNVRVMSLESPV----KTEVEEAYEGEDEHEESPSIKRELSD 98

Query: 65  LDLQAHDANVGKEEFDLRNTKSDYFTTASPEVNAQSVNGAEKDAKKGIDMIQSGHLSDPG 124
            DLQ H+A V +  +   + +    +    + N Q  +   K +KK  D+IQSGH+SDPG
Sbjct: 99  FDLQVHEAAVIQGRYHPSSEEIKCPSLYEHQANIQLEDRDHKYSKKSDDIIQSGHVSDPG 158

Query: 125 VGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEELQELSEKVRENYHSGSPM 184
           +G+ +F ASPKLKRSCS+LE R VL K +   P SKSQSFE LQ LS     N  S  P 
Sbjct: 159 IGKADFCASPKLKRSCSDLERRDVLRKTSHLFPSSKSQSFENLQGLSAYQMVNLES--PR 216

Query: 185 SVTSHFSADRVMLKKHSSSQILPSRSRRLWWKLFLWSHRNLHKPWI--LKPQPHRAVVLN 242
           SV +H SADRVMLKKHSSSQ+LPSRS+RLWWKLFLWSHRN+H+  +  LK     +  L 
Sbjct: 217 SVMTHGSADRVMLKKHSSSQVLPSRSKRLWWKLFLWSHRNIHRMQLGKLKTIHPASAALK 276

Query: 243 QQGGYTSDTLEPNQATKLSKTE--SPGSCTGESLNKGCNGSYNEDRQSWDGFQNEVSAVW 300
            Q GY+SDTLE      L   E  SP S  GE  +  C+   N D+Q W  FQ E    W
Sbjct: 277 SQCGYSSDTLEAKHGKALRHVELPSPSSSYGEYFHNSCDDG-NIDKQRWSRFQKENFGFW 335

Query: 301 PQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEG----VIFPPSPETGKS--PAR 354
           PQ QWVAF  ESSSF RVDEWVKDL ++ P  +D+  +     + FPPSP+       + 
Sbjct: 336 PQNQWVAFSTESSSFSRVDEWVKDLEIQQPPPEDDFDDDNIGTIAFPPSPDAIPQFIASS 395

Query: 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSN 414
           STA   R  + NLS+EIL+ANSV++SLN +S  AHI+GIG+KAIP+ISHFS+LRSVNLS+
Sbjct: 396 STAQSVRHPDANLSKEILNANSVVQSLNPASTAAHISGIGIKAIPSISHFSTLRSVNLSS 455

Query: 415 NFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
           N IVHI  G +PKGLHTLNLSRNKI+TIEGLRE+TRLRVLDLSYNRI RIG G
Sbjct: 456 NLIVHITPGFLPKGLHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQG 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2032040	681	AT1G78230 [Arabidopsis thalian	0.355	0.264	0.588	2.5e-79
TAIR|locus:2125507	677	AT4G03260 [Arabidopsis thalian	0.317	0.237	0.451	1.7e-26
ZFIN|ZDB-GENE-040724-113	221	si:ch211-191d15.2 "si:ch211-19	0.250	0.574	0.323	4.7e-05
UNIPROTKB|F1PGJ8	1027	LRRCC1 "Uncharacterized protei	0.211	0.104	0.366	0.00027
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.142	0.080	0.418	0.00029
RGD|628722	1023	Lrrcc1 "leucine rich repeat an	0.207	0.102	0.372	0.00057
MGI|MGI:1918960	1026	Lrrcc1 "leucine rich repeat an	0.203	0.100	0.375	0.00094

TAIR|locus:2032040 AT1G78230 [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
 Identities = 113/192 (58%), Positives = 141/192 (73%)

Query:   281 SYNEDRQSWDG-FQNEVSAVWPQR-QWVAFPAESSSFKRVDEWVKDLGMET--PF-EDDE 335
             S+ E+  ++   F N+ S +WP   QWVAF AESSS KRVDEWV+ L +ET  P  ED +
Sbjct:   329 SHEEESTNYCADFTNQSSNLWPHHNQWVAFSAESSSMKRVDEWVRGLDVETVVPVNEDKD 388

Query:   336 VAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGL 395
             V    IFP SP T +SP  +          N+SE I+HANS+I+SL+ SS+VAHI+ IGL
Sbjct:   389 VL--AIFPTSPNTERSPLGNVVQSG-----NVSEAIVHANSLIQSLSKSSSVAHISSIGL 441

Query:   396 KAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLD 455
             KAIP+ISHF+SL+S++LSNNFIV I   S+PKGLH LNLS+NKI+ IEGLR++TRLRVLD
Sbjct:   442 KAIPSISHFTSLKSIDLSNNFIVQITPASLPKGLHALNLSKNKISVIEGLRDLTRLRVLD 501

Query:   456 LSYNRIFRIGHG 467
             LSYNRI RIG G
Sbjct:   502 LSYNRISRIGQG 513

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2125507 AT4G03260 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 75/166 (45%), Positives = 98/166 (59%)

Query:   304 QWVAFPAESSSFKRVDEWVKDLG-METPFEDDEVAE-GVIFPPSPETGKSPARSTAHLTR 361
             Q   F  + S FKR+++WV DL  +    E DE+       P  P      A S+A +  
Sbjct:   319 QQAEFSGKDSKFKRIEDWVNDLQHVNLSEEADEITGYDDELPREPVVLNEQATSSAKV-- 376

Query:   362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIP 421
                I L+  +  A   I SL++S+  A +   GL  IP +S F  LR +NLS N IV I 
Sbjct:   377 -DAIKLTPGMEAAKKYISSLSASATTAQLVSHGLVVIPFLSAFVGLRVLNLSGNAIVRIT 435

Query:   422 TGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
              G++P+GLH LNLS+N I+ IEGLRE+TRLRVLDLSYNRI R+GHG
Sbjct:   436 AGALPRGLHALNLSKNSISVIEGLRELTRLRVLDLSYNRILRLGHG 481

GO:0005634 "nucleus" evidence=ISM

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

ZFIN|ZDB-GENE-040724-113 si:ch211-191d15.2 "si:ch211-191d15.2" [Danio rerio (taxid:7955)]

 Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 45/139 (32%), Positives = 69/139 (49%)

Query:   370 EILHANSVIRSLNSSSAVAHIAGIGLKAIPTISH-FSSLRSVNLSNNFIVHIPTGSMPKG 428
             E L  +++ RS+  ++AV  +A   L  +  +   +S L+ ++LS+N +V  P G +P  
Sbjct:    22 ESLGLHTLPRSVPLNTAVLSVARNRLCNVDNMFQPYSGLQELSLSHNQLVRFPRG-LPAS 80

Query:   429 LHTLNLSRNKIN--TIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLT 486
             L TL L  N+I   T   LR++  L  LDL  NRI  +  G +LS             LT
Sbjct:    81 LETLQLQENQITYITTGSLRQLGNLTRLDLEDNRIRSVQPGALLS-------LTRLRMLT 133

Query:   487 IIPN-CKRLSCNLYNSKSH 504
             +  N   RL  NL +S +H
Sbjct:   134 LKGNRLSRLPANLPSSLTH 152

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|F1PGJ8 LRRCC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 41/112 (36%), Positives = 58/112 (51%)

Query:   380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439
             SL+SS    ++    +  I  I H  +LR ++LS+N I  I   S    L TLNLS N I
Sbjct:    35 SLDSSLHAINLHCNNISKIEAIDHVWNLRHLDLSSNQISRIEGLSTLTKLCTLNLSCNLI 94

Query:   440 NTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNC 491
               +EGL  +T L  L+LSYN I  +  G I   P+  +  KL  ++ +  NC
Sbjct:    95 TRVEGLEALTNLTKLNLSYNHINDLS-GLI---PLHGIKHKL-RYIDLHSNC 141

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 0.00029, P = 0.00029
 Identities = 31/74 (41%), Positives = 43/74 (58%)

Query:   391 AGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREM 448
             AG+GL  IP +  + ++R ++L +N I  I   S    L TL L  NK+  + G  +R M
Sbjct:   497 AGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYM 556

Query:   449 TRLRVLDLSYNRIF 462
              +L VLDLSYNR F
Sbjct:   557 QKLVVLDLSYNRDF 570

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

RGD|628722 Lrrcc1 "leucine rich repeat and coiled-coil centrosomal protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 0.00057, P = 0.00057
 Identities = 41/110 (37%), Positives = 59/110 (53%)

Query:   372 LHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHT 431
             LH+ S + SL+SS    ++    +  I +I H  +LR ++LS+N I  I   +    L T
Sbjct:    28 LHSISEL-SLDSSLHAINLHCNNISKITSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCT 86

Query:   432 LNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKL 481
             LNLS N I  +EGL  +  L  L+LSYN I  +  G I   P+  L +KL
Sbjct:    87 LNLSCNLITRVEGLEALVNLTRLNLSYNHISDLS-GLI---PLHGLKYKL 132

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1918960 Lrrcc1 "leucine rich repeat and coiled-coil domain containing 1" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 0.00094, P = 0.00094
 Identities = 42/112 (37%), Positives = 59/112 (52%)

Query:   372 LHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHT 431
             LH+ S + SL+SS    ++    +  I +I H  +LR ++LS+N I  I   +    L T
Sbjct:    28 LHSISEL-SLDSSIHAINLHCNNISKISSIDHIWNLRHLDLSSNQISQIEGLNTLTKLCT 86

Query:   432 LNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILS--KPVFWLSFKL 481
             LNLS N I  +EGL  +  L  L+LSYN I      N LS   P+  L +KL
Sbjct:    87 LNLSCNLITRVEGLEALVNLTKLNLSYNHI------NDLSGLMPLHGLKYKL 132


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      507       492   0.00082  119 3  11 23  0.44    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  311 KB (2159 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.68u 0.07s 44.75t   Elapsed:  00:00:02
  Total cpu time:  44.68u 0.07s 44.75t   Elapsed:  00:00:02
  Start:  Fri May 10 15:36:36 2013   End:  Fri May 10 15:36:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015224001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (580 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-10
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 406 SLRSVNLSNNFIVHIPTGS--MPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRI 461
           +L+S++LSNN +  IP G+      L  L+LS N + +I  E    +  LR LDLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 45.6 bits (109), Expect = 6e-07
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 427 KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
             L TL+LS N+I  +  L  +  L  LDLS N+I
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
           ++ + ++S+  +L  + LSNN +  +P        L TL+LS N+I++I  L  +T LR 
Sbjct: 222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRE 281

Query: 454 LDLSYNRIFRIGHGNIL 470
           LDLS N +        L
Sbjct: 282 LDLSGNSLSNALPLIAL 298

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 394 GLKA-IP-TISHFSSLRSVNLSNNFI---VHIPTGSMPKGLHTLNLSRNKINTI--EGLR 446
           GL+  IP  IS    L+S+NLS N I   +    GS+   L  L+LS N  N    E L 
Sbjct: 429 GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLG 487

Query: 447 EMTRLRVLDLSYNRI 461
           ++T LR+L+L+ N +
Sbjct: 488 QLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLRE 447
           +L +++LSNN I  +P  S    L TL+LS NKI  +  L  
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 370 EILHANSVIRSLN-SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI-----VHIPTG 423
           E L AN  +  L+ +++ +       L    T++   SL  +NL +N +       + + 
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAE--TLASLKSLEVLNLGDNNLTDAGAAALASA 244

Query: 424 --SMPKGLHTLNLSRNKINT------IEGLREMTRLRVLDLSYNRI 461
             S    L TL+LS N I         E L E   L  LDL  N+ 
Sbjct: 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 405 SSLRSVNLS-NNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREM---TRLRVLDLSYNR 460
           SSLR +NLS NNF   IP GS+P  L TL+LS N + + E   ++   + L+VLDL  N 
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGSIP-NLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGN- 174

Query: 461 IFRIGHGNILSKPVFWLSFKLFEFLTIIPN 490
              +G       P    +    EFLT+  N
Sbjct: 175 -VLVGK-----IPNSLTNLTSLEFLTLASN 198

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.08
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.93
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.54
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.52
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.38
PLN03150	623	hypothetical protein; Provisional	98.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.32
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.04
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.77
PLN03150	623	hypothetical protein; Provisional	97.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.11
PRK15386	426	type III secretion protein GogB; Provisional	96.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.96
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.9
PRK15386	426	type III secretion protein GogB; Provisional	95.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	92.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.56
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.9
smart00370	26	LRR Leucine-rich repeats, outliers.	89.9
smart00370	26	LRR Leucine-rich repeats, outliers.	89.83
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	84.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	84.15

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.08  E-value=4.1e-11  Score=130.35  Aligned_cols=142  Identities=23%  Similarity=0.282  Sum_probs=107.1

Q ss_pred             ccccccCCccccccchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCC
Q 010557          361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR  436 (507)
Q Consensus       361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~  436 (507)
                      .+..++++.+.+..++.+......++.|+|.+|.|+.+.  .+..++.|+.||||.|.|+.|+...|+  .+|..|+|++
T Consensus       103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~  182 (873)
T KOG4194|consen  103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS  182 (873)
T ss_pred             cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence            344556777777777777777777888888888888886  788888889999999999888888887  6788899999


Q ss_pred             CCCCCCc--CCCCCCCccEEEccCCCCcccCCCCCC---CCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCc
Q 010557          437 NKINTIE--GLREMTRLRVLDLSYNRIFRIGHGNIL---SKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       437 NkLs~Lp--~L~~L~sL~~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n  502 (507)
                      |+|+.+.  .|..|.+|.+|.|+.|+|+.+|...|.   .|+.|+|..|+|.++  -.+..|.+|....+..|
T Consensus       183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence            9998875  388888888889999999988887666   445678888888553  12333444444344444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.07  E-value=2.7e-10  Score=124.09  Aligned_cols=125  Identities=23%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCc--CCCCCCCccEEE
Q 010557          381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE--GLREMTRLRVLD  455 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp--~L~~L~sL~~Ld  455 (507)
                      ||...+.|+|++|.|..+.  .|.++++|+.++|..|.++.||..... .+|+.|+|.+|.|+.+.  .+.-++.|+.||
T Consensus        76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            4555667777777777765  677777777777777777777775544 56777777777777764  366777777777


Q ss_pred             ccCCCCcccCCCCCC---CCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccCC
Q 010557          456 LSYNRIFRIGHGNIL---SKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       456 LS~N~Is~IP~~~f~---sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~~  505 (507)
                      ||.|.|+.|+...|+   +++.|+|++|.|..+  ..+..+.+|...-++.|++.
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit  210 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT  210 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence            777777777776665   566777777777443  44555556666555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=2.7e-10  Score=108.43  Aligned_cols=118  Identities=25%  Similarity=0.289  Sum_probs=50.3

Q ss_pred             CCcEEEccCCCCCCCCCCC-CCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc-CC-CCCCCccEEEccCCC
Q 010557          384 SSAVAHIAGIGLKAIPTIS-HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-GL-REMTRLRVLDLSYNR  460 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP~L~-~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp-~L-~~L~sL~~LdLS~N~  460 (507)
                      .++.|+|++|.|+.|..++ .+.+|+.|+|++|.|+.+........|+.|+|++|+|+.+. ++ ..+++|+.|+|++|+
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~   99 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK   99 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence            3588999999999988776 58899999999999999987555588999999999999985 34 468999999999999


Q ss_pred             CcccCC----CCCCCCCEEEcCCCCCCC--------CCCCCCCCcCCeeeCCC
Q 010557          461 IFRIGH----GNILSKPVFWLSFKLFEF--------LTIIPNCKRLSCNLYNS  501 (507)
Q Consensus       461 Is~IP~----~~f~sL~~L~LS~N~Ls~--------L~~L~nL~~LscnlIs~  501 (507)
                      |..+..    ..++.|+.|+|.+|.+..        +..+++|+.|+...+..
T Consensus       100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen  100 ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             --SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence            987655    457789999999998833        34566777777666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.96  E-value=2.8e-11  Score=116.00  Aligned_cols=121  Identities=23%  Similarity=0.288  Sum_probs=86.4

Q ss_pred             CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCC--CcC-CCCCCCccEEEccC
Q 010557          384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINT--IEG-LREMTRLRVLDLSY  458 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~--Lp~-L~~L~sL~~LdLS~  458 (507)
                      +|++|++.+|+|..+| .+..++.|+.|+++.|.+..+|.+... +-|+.|||..|++..  +|+ |.-++.|+.|+|+.
T Consensus        57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen   57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence            3567777777777777 777777777777777777777665433 567777777777765  565 66677777777777


Q ss_pred             CCCcccCC--CCCCCCCEEEcCCCCC-CCCCCCCCCCcCCeeeCCCccC
Q 010557          459 NRIFRIGH--GNILSKPVFWLSFKLF-EFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       459 N~Is~IP~--~~f~sL~~L~LS~N~L-s~L~~L~nL~~LscnlIs~n~~  504 (507)
                      |.+.-+|.  +.+.+|+.|.+..|.+ +.+.+++.|+.|+..+|++|+.
T Consensus       137 ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  137 NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            77777666  4566777777777765 6677778888887777777754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=2.1e-10  Score=109.21  Aligned_cols=114  Identities=25%  Similarity=0.301  Sum_probs=44.4

Q ss_pred             ccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCC
Q 010557          363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKIN  440 (507)
Q Consensus       363 ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs  440 (507)
                      ..|+|.++.+..+..+...-..|+.|++++|.|+.++.|..++.|+.|+|++|.|+.+.....  .++|+.|+|++|+|.
T Consensus        22 ~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   22 RELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             --------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred             ccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence            345666666666555552113467888888888888888888888888888888888865321  257888888888887


Q ss_pred             CCc---CCCCCCCccEEEccCCCCcccCC------CCCCCCCEEE
Q 010557          441 TIE---GLREMTRLRVLDLSYNRIFRIGH------GNILSKPVFW  476 (507)
Q Consensus       441 ~Lp---~L~~L~sL~~LdLS~N~Is~IP~------~~f~sL~~L~  476 (507)
                      .+.   .+..|++|+.|+|.+|.++..+.      ..+++|+.|+
T Consensus       102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            754   36778888888888888886554      3456666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.93  E-value=1.4e-10  Score=126.99  Aligned_cols=125  Identities=22%  Similarity=0.239  Sum_probs=91.8

Q ss_pred             hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc-CCCCCCCcc
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE-GLREMTRLR  452 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp-~L~~L~sL~  452 (507)
                      .+..| ..|++|+|++|+|+++| .+..-.++..|+||+|.|..||...|.  +.|..||||+|++..+| .++.|..|+
T Consensus        98 diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq  176 (1255)
T KOG0444|consen   98 DIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ  176 (1255)
T ss_pred             hhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence            34444 34688899999999888 888888899999999999998887775  67788899999998885 488888899


Q ss_pred             EEEccCCCCcccCCCCCC---CCCEEEcCCCCC---CCCCCCCCCCcCCeeeCCCc
Q 010557          453 VLDLSYNRIFRIGHGNIL---SKPVFWLSFKLF---EFLTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       453 ~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~L---s~L~~L~nL~~LscnlIs~n  502 (507)
                      +|.|++|.+..+--..++   +|..|++++.+-   .+|..+..+.+|.-..++.|
T Consensus       177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            999999987755444444   555677777543   44555666666554444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.89  E-value=9.8e-11  Score=112.27  Aligned_cols=117  Identities=25%  Similarity=0.357  Sum_probs=100.4

Q ss_pred             CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCc-CCCCCCCccEEEccCCC
Q 010557          384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYNR  460 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp-~L~~L~sL~~LdLS~N~  460 (507)
                      .++.|.+++|+|+.+| .+..+.+|+.|++++|+|+.+|..... .+|+.|+++.|++..+| +|+.++.|++|||.+|+
T Consensus        34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn  113 (264)
T KOG0617|consen   34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN  113 (264)
T ss_pred             hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence            4688999999999988 999999999999999999999986544 78999999999999987 59999999999999999


Q ss_pred             Ccc--cCCCCCC--CCCEEEcCCCCCCC-CCCCCCCCcCCeeeCC
Q 010557          461 IFR--IGHGNIL--SKPVFWLSFKLFEF-LTIIPNCKRLSCNLYN  500 (507)
Q Consensus       461 Is~--IP~~~f~--sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs  500 (507)
                      +..  +|...|-  .|+.|+|+.|.|+. ++.+++|++|...-+.
T Consensus       114 l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lr  158 (264)
T KOG0617|consen  114 LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLR  158 (264)
T ss_pred             cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeec
Confidence            984  6654443  67789999999966 5788888887764443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.88  E-value=7.5e-09  Score=118.86  Aligned_cols=121  Identities=21%  Similarity=0.273  Sum_probs=95.1

Q ss_pred             cCCcEEEccCCCCC-CCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEcc
Q 010557          383 SSSAVAHIAGIGLK-AIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLS  457 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt-~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS  457 (507)
                      ..|++|++++|.++ .+| ...+++|++|+|++|.+....+..+.  .+|+.|+|++|.+.+ +|. +..+++|++|+|+
T Consensus       118 ~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence            45799999999987 444 35688999999999999866554443  789999999999876 554 8889999999999


Q ss_pred             CCCCcc-cCC--CCCCCCCEEEcCCCCCC--CCCCCCCCCcCCeeeCCCccC
Q 010557          458 YNRIFR-IGH--GNILSKPVFWLSFKLFE--FLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       458 ~N~Is~-IP~--~~f~sL~~L~LS~N~Ls--~L~~L~nL~~LscnlIs~n~~  504 (507)
                      +|.++. +|.  +.+.+|+.|+|++|.+.  .+..++++++|....++.|.+
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            999885 454  45668889999999883  466788888888877777654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.87  E-value=6.6e-09  Score=119.30  Aligned_cols=119  Identities=24%  Similarity=0.299  Sum_probs=61.7

Q ss_pred             CcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS~  458 (507)
                      |++|++++|.+. .+| .|..+++|++|+|++|.+....+..+.  .+|+.|+|++|.+++ +|. +..+++|+.|+|++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            455555555554 344 555555555555555555544333222  455555666555554 332 55556666666666


Q ss_pred             CCCcc-cCC--CCCCCCCEEEcCCCCCC--CCCCCCCCCcCCeeeCCCcc
Q 010557          459 NRIFR-IGH--GNILSKPVFWLSFKLFE--FLTIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       459 N~Is~-IP~--~~f~sL~~L~LS~N~Ls--~L~~L~nL~~LscnlIs~n~  503 (507)
                      |.++. +|.  +.+.+|+.|+|+.|.+.  .+..+.++.+|....++.|.
T Consensus       246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            65553 332  23345556666666552  23445555555555554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.86  E-value=2.3e-10  Score=125.28  Aligned_cols=186  Identities=24%  Similarity=0.258  Sum_probs=129.9

Q ss_pred             ceeEeecCCCCchhHHHHHHhcCCCCCCcccccccccccCCCCCCCCCchhhhhhhcccccccCCccccc-cchhhhccc
Q 010557          304 QWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSPETGKSPARSTAHLTRRSEINLSEEILH-ANSVIRSLN  382 (507)
Q Consensus       304 ~wv~~s~e~s~l~RV~~Wv~~L~~~~~lEd~~e~~~iv~pps~~~G~s~~~s~aqL~~~ldLsLn~~il~-~~s~l~~Lp  382 (507)
                      .=|.|+....+..+++.-|..+....=+..+          ....+..|. +.+++..+-.|+++.+.+. .-+.+..||
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLn----------rt~L~~vPe-EL~~lqkLEHLs~~HN~L~~vhGELs~Lp   78 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLN----------RTKLEQVPE-ELSRLQKLEHLSMAHNQLISVHGELSDLP   78 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEec----------hhhhhhChH-HHHHHhhhhhhhhhhhhhHhhhhhhccch
Confidence            3466777777777777777776555322111          111112221 4445555556666665554 345566676


Q ss_pred             cCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC--CCCCCCccEEEc
Q 010557          383 SSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG--LREMTRLRVLDL  456 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdL  456 (507)
                      . |+.+.+..|+|+  .|| .|..|..|+.||||+|++..+|.+.-. +++..|+||+|+|.+||.  |-+|+-|-.|+|
T Consensus        79 ~-LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   79 R-LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             h-hHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            5 588888889887  677 888899999999999999998886554 788899999999999886  778888889999


Q ss_pred             cCCCCcccCCC--CCCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCC
Q 010557          457 SYNRIFRIGHG--NILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNS  501 (507)
Q Consensus       457 S~N~Is~IP~~--~f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~  501 (507)
                      |+|++..+|+.  -+..|+.|.|++|.+..  +..++.++.|....+++
T Consensus       158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence            99999988874  45578888899998844  45555666665555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.82  E-value=7.8e-09  Score=117.75  Aligned_cols=119  Identities=19%  Similarity=0.157  Sum_probs=84.5

Q ss_pred             ccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC
Q 010557          380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN  459 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N  459 (507)
                      .+|..|+.|+|++|+|+.+|.+  ..+|+.|++++|.|+.++..  +.+|+.|+|++|.|+.+|.+  ...|+.|+|++|
T Consensus       339 ~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N  412 (788)
T PRK15387        339 TLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGN  412 (788)
T ss_pred             ccccccceEecCCCccCCCCCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCC
Confidence            3555677888888888877743  24677777777777776643  24688888888888877653  256788888888


Q ss_pred             CCcccCCCCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557          460 RIFRIGHGNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       460 ~Is~IP~~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~  505 (507)
                      +|+.||. .+..|+.|+|++|+|.. +..+.++..|....+++|+++
T Consensus       413 ~LssIP~-l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        413 RLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cCCCCCc-chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence            8888775 34467778888888844 455677777777777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=7.2e-10  Score=113.53  Aligned_cols=121  Identities=23%  Similarity=0.327  Sum_probs=76.8

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCC
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTI  442 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~L  442 (507)
                      .+.|+.+.+..+..--.|-+.++.|++++|.|..+..+..|++|+.||||+|.++.+...-.. .++++|.|+.|.|..+
T Consensus       288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L  367 (490)
T KOG1259|consen  288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL  367 (490)
T ss_pred             hccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh
Confidence            344555555544444444444677777777777666666777777777777777666553322 5677777777777777


Q ss_pred             cCCCCCCCccEEEccCCCCcccCC----CCCCCCCEEEcCCCCCCC
Q 010557          443 EGLREMTRLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLFEF  484 (507)
Q Consensus       443 p~L~~L~sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~  484 (507)
                      .+++.|.+|..||+++|+|..+..    +.++.|..+.|.+|.|..
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            777777777777777777765433    556666666666676644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.78  E-value=1.8e-08  Score=114.83  Aligned_cols=100  Identities=20%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             cccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCC------------------CCCCCcEEECCCCCCCCC
Q 010557          381 LNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS------------------MPKGLHTLNLSRNKINTI  442 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~s------------------f~~sL~~LdLS~NkLs~L  442 (507)
                      ++..|++|++++|+|+.+|.+  .++|+.|+|++|.|+.++...                  .+.+|+.|+|++|+|+.+
T Consensus       240 lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~L  317 (788)
T PRK15387        240 LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL  317 (788)
T ss_pred             CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccC
Confidence            455667777777777766632  234455555555444443310                  113455555555555554


Q ss_pred             cCCCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCC
Q 010557          443 EGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       443 p~L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L  485 (507)
                      |.+  ...|+.|++++|.|+.||. ...+|+.|+|++|+|..+
T Consensus       318 p~l--p~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~L  357 (788)
T PRK15387        318 PAL--PSELCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASL  357 (788)
T ss_pred             CCC--cccccccccccCccccccc-cccccceEecCCCccCCC
Confidence            431  1123344444444444442 123566677777766443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=9.3e-10  Score=112.75  Aligned_cols=122  Identities=20%  Similarity=0.174  Sum_probs=105.1

Q ss_pred             CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCC-CCCCCccEEEccCCCCc
Q 010557          385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL-REMTRLRVLDLSYNRIF  462 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L-~~L~sL~~LdLS~N~Is  462 (507)
                      |+.|+|++|.|+.+. +..-++.++.|++|+|.|..+....+..+|+.||||+|.++.+.++ ..|.+.++|+|+.|.|.
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence            688999999999998 8888899999999999999999877778999999999999998873 45778999999999999


Q ss_pred             ccCC-CCCCCCCEEEcCCCCCCC---CCCCCCCCcCCeeeCCCccCCC
Q 010557          463 RIGH-GNILSKPVFWLSFKLFEF---LTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       463 ~IP~-~~f~sL~~L~LS~N~Ls~---L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .+.. +.+-+|..|+++.|+|+.   +..+|+|+.|....+-+|++..
T Consensus       366 ~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  366 TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            8765 566799999999999955   5677777777777777777653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.73  E-value=2.3e-08  Score=113.73  Aligned_cols=118  Identities=17%  Similarity=0.163  Sum_probs=64.6

Q ss_pred             ccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC-CC-------------
Q 010557          382 NSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG-LR-------------  446 (507)
Q Consensus       382 p~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~-L~-------------  446 (507)
                      +..|+.|+|++|.|..+| .+.  .+|+.|+|++|.|+.+|...+ .+|+.|+|++|+|+.+|. +.             
T Consensus       240 ~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L  316 (754)
T PRK15370        240 PDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL  316 (754)
T ss_pred             hccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC-CCCcEEECCCCccccCcccchhhHHHHHhcCCcc
Confidence            344555666666655555 332  356666666666665544322 356666666666555432 11             


Q ss_pred             ------CCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCC-CCCCCCcCCeeeCCCccC
Q 010557          447 ------EMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLT-IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       447 ------~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~-~L~nL~~LscnlIs~n~~  504 (507)
                            ..++|+.|++++|.|+.||.....+|+.|+|++|+|..++ .+  ...|....+++|.+
T Consensus       317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~L  379 (754)
T PRK15370        317 TALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNAL  379 (754)
T ss_pred             ccCCccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcC
Confidence                  1245666666666666666555557777777777775432 22  23455555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.72  E-value=9.1e-10  Score=116.03  Aligned_cols=119  Identities=23%  Similarity=0.264  Sum_probs=88.0

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCc
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is  462 (507)
                      +.+.+++|.+.-+| .+..+++|+.|+|++|.+..+|-..+. ..|+.||||+|++..+|. +..+..|+++..+.|+|.
T Consensus       415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~  494 (565)
T KOG0472|consen  415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG  494 (565)
T ss_pred             HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc
Confidence            34556666666666 677888888888888888888876665 568888888888888776 556666777777778888


Q ss_pred             ccCCC---CCCCCCEEEcCCCCC-CCCCCCCCCCcCCeeeCCCccC
Q 010557          463 RIGHG---NILSKPVFWLSFKLF-EFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       463 ~IP~~---~f~sL~~L~LS~N~L-s~L~~L~nL~~LscnlIs~n~~  504 (507)
                      .++..   .+.+|+.|+|.+|.| ..|+.++++++|+...+.+|++
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            77764   344677788888887 5677888888888888877765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.69  E-value=4.1e-08  Score=111.75  Aligned_cols=96  Identities=23%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCC
Q 010557          384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRI  461 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~I  461 (507)
                      +|+.|++++|.|+.+| .+.  .+|+.|+|++|.|..||... +.+|+.|+|++|+|+.+|. +.  .+|+.|+|++|+|
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-hCCCCEEECcCCccCccccccC--CCCcEEECCCCcc
Confidence            4555555555555555 332  24555555555555554432 2355666666666655543 21  3566666666666


Q ss_pred             cccCCCCCCCCCEEEcCCCCCCC
Q 010557          462 FRIGHGNILSKPVFWLSFKLFEF  484 (507)
Q Consensus       462 s~IP~~~f~sL~~L~LS~N~Ls~  484 (507)
                      +.+|.....+|..|+|++|.|..
T Consensus       296 t~LP~~lp~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        296 RTLPAHLPSGITHLNVQSNSLTA  318 (754)
T ss_pred             ccCcccchhhHHHHHhcCCcccc
Confidence            66554444455556666666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.61  E-value=6.8e-09  Score=109.56  Aligned_cols=116  Identities=29%  Similarity=0.342  Sum_probs=98.6

Q ss_pred             hhccccCCcEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL  456 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP~-L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdL  456 (507)
                      +..+ ..+..|++..|.|..+.. +..+.+|++|+|++|.|+.+.+......|+.|++++|.|+.+.++..++.|+.++|
T Consensus        91 l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   91 LSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL  169 (414)
T ss_pred             cccc-cceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccC
Confidence            4443 347899999999999986 99999999999999999999987777779999999999999999999999999999


Q ss_pred             cCCCCcccCC---CCCCCCCEEEcCCCCCCCCCCCCCCCcC
Q 010557          457 SYNRIFRIGH---GNILSKPVFWLSFKLFEFLTIIPNCKRL  494 (507)
Q Consensus       457 S~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L~~L~nL~~L  494 (507)
                      ++|+|..+..   ..+..|..+++..|.+..+..+..+..+
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l  210 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKL  210 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHH
Confidence            9999999988   7777888889998888665554444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.54  E-value=1e-08  Score=116.44  Aligned_cols=119  Identities=24%  Similarity=0.221  Sum_probs=83.1

Q ss_pred             CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEEccCCC
Q 010557          384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR  460 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~  460 (507)
                      .|++|+|++|.|..+|  .+.+|..|+.|+||||.++.|+..... ..|++|..-.|+|..+|.+..++.|+++||+.|+
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch
Confidence            4677777777777777  677777777777777777777754333 5677777777777777778888888888888888


Q ss_pred             Ccc--cCCCCC-CCCCEEEcCCCCC--CCCCCCCCCCcCCeeeCCCc
Q 010557          461 IFR--IGHGNI-LSKPVFWLSFKLF--EFLTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       461 Is~--IP~~~f-~sL~~L~LS~N~L--s~L~~L~nL~~LscnlIs~n  502 (507)
                      |+.  ++...- +.|++|+|++|.-  ..-.-+..|..++|..+.-+
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            874  333332 6888888888863  22344556666666555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.52  E-value=1.4e-08  Score=107.25  Aligned_cols=124  Identities=24%  Similarity=0.295  Sum_probs=101.3

Q ss_pred             ccCCccccccch-hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCC
Q 010557          365 INLSEEILHANS-VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINT  441 (507)
Q Consensus       365 LsLn~~il~~~s-~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~  441 (507)
                      +-++.+.+...+ .+..++ .|+.|++++|-+..+| .++.+..|+.|+|+.|++..+|..... ..|+.+-.++|+|..
T Consensus       417 l~lsnn~isfv~~~l~~l~-kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  417 LVLSNNKISFVPLELSQLQ-KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             HHhhcCccccchHHHHhhh-cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccc
Confidence            334444555333 344454 4799999999999999 999999999999999999999886544 557777778899999


Q ss_pred             Cc--CCCCCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCCCCCCCC
Q 010557          442 IE--GLREMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFEFLTIIP  489 (507)
Q Consensus       442 Lp--~L~~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls~L~~L~  489 (507)
                      ++  ++..|.+|++|||..|.|..||+  +.+.+|++|.|.+|.|..|+..+
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~i  547 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQI  547 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHH
Confidence            85  39999999999999999999998  67889999999999998776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.46  E-value=1.3e-07  Score=73.75  Aligned_cols=56  Identities=41%  Similarity=0.630  Sum_probs=32.3

Q ss_pred             CCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCC
Q 010557          406 SLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI  461 (507)
Q Consensus       406 sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~I  461 (507)
                      +|+.|+|++|.|+.|++..|.  ++|+.|+|++|.|+.++.  |..+++|+.|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455556666666655555554  555556666555555532  55666666666666654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.41  E-value=1.6e-08  Score=106.60  Aligned_cols=109  Identities=22%  Similarity=0.258  Sum_probs=89.6

Q ss_pred             hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEE-ECCCCCCCCCcC--CCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTL-NLSRNKINTIEG--LREM  448 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~L-dLS~NkLs~Lp~--L~~L  448 (507)
                      .+...||...+.+.|..|+|+.||  .|..|.+|+.||||+|.|+.|.+.+|.  ..|..| ++++|+|+.+|.  |..|
T Consensus        60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            445668888899999999999999  899999999999999999999999986  555555 556699999974  8999


Q ss_pred             CCccEEEccCCCCcccCCCCCC---CCCEEEcCCCCCCC
Q 010557          449 TRLRVLDLSYNRIFRIGHGNIL---SKPVFWLSFKLFEF  484 (507)
Q Consensus       449 ~sL~~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~Ls~  484 (507)
                      .+|+.|.+.-|+|..++.+.|.   +|..|.|-.|.+..
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~  178 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS  178 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh
Confidence            9999999999999888876555   44555666776643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.38  E-value=3e-08  Score=112.71  Aligned_cols=120  Identities=22%  Similarity=0.288  Sum_probs=98.2

Q ss_pred             CCcEEEccCCCCC--CCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEEccC
Q 010557          384 SSAVAHIAGIGLK--AIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSY  458 (507)
Q Consensus       384 sLt~L~LS~N~Lt--~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~  458 (507)
                      .|+.|++.+|.|+  .+|.|.++.+|++|+|++|+|..+|...+.  ..|+.|+||+|+|+.||. +..+..|++|...+
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence            3678899999998  567899999999999999999999987775  678899999999999986 88889999999999


Q ss_pred             CCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCC--CcCCeeeCCCcc
Q 010557          459 NRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNC--KRLSCNLYNSKS  503 (507)
Q Consensus       459 N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL--~~LscnlIs~n~  503 (507)
                      |+|..+|. ..++.|+.++|+.|+|..+.....+  ++|....+++|+
T Consensus       440 N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  440 NQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             CceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            99999995 3566889999999999553222222  567777777665

>PLN03150 hypothetical protein; Provisional

Probab=98.37  E-value=8.9e-07  Score=98.88  Aligned_cols=98  Identities=32%  Similarity=0.386  Sum_probs=81.1

Q ss_pred             CcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS~  458 (507)
                      ++.|+|++|.|+ .+| .|..|++|+.|+|++|.|.+..+..+.  .+|+.|+|++|.|++ +|. +..|++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            678999999998 677 899999999999999999976554443  789999999999997 665 89999999999999


Q ss_pred             CCCc-ccCCC---CCCCCCEEEcCCCCC
Q 010557          459 NRIF-RIGHG---NILSKPVFWLSFKLF  482 (507)
Q Consensus       459 N~Is-~IP~~---~f~sL~~L~LS~N~L  482 (507)
                      |.++ .+|..   .+..+..+++..|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            9998 56653   223556788888864

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.36  E-value=2.3e-07  Score=72.38  Aligned_cols=56  Identities=29%  Similarity=0.495  Sum_probs=52.2

Q ss_pred             CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCC
Q 010557          384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI  439 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkL  439 (507)
                      .|++|++++|+|+.+|  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999998  789999999999999999999998887  8999999999986

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.32  E-value=2.7e-07  Score=95.63  Aligned_cols=120  Identities=23%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCC-CCCCCcEEECCCCCC-CCCcCCCCCCCccEEEccCCCC
Q 010557          385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKI-NTIEGLREMTRLRVLDLSYNRI  461 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~s-f~~sL~~LdLS~NkL-s~Lp~L~~L~sL~~LdLS~N~I  461 (507)
                      |+.|++++|.++.+| ....+++|+.|++++|.|..++... ....|..|.+++|.+ ..+..+..+.+|..|.+..|++
T Consensus       165 L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             ccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence            344444444444444 2224444444444444444444431 222344444444422 2222244444444444555554


Q ss_pred             cccCC--CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557          462 FRIGH--GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       462 s~IP~--~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~  504 (507)
                      ..++.  ..+.+|+.|+++.|+++.+..++.+.+|++..++.+..
T Consensus       245 ~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         245 EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             eeccchhccccccceeccccccccccccccccCccCEEeccCccc
Confidence            44221  33445677778888887766677777777777776644

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.30  E-value=1.6e-07  Score=99.24  Aligned_cols=121  Identities=26%  Similarity=0.213  Sum_probs=104.4

Q ss_pred             CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCC-CCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCc
Q 010557          385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp-~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is  462 (507)
                      +..+.+..|.|..+- .+..+.+|+.|++.+|.|..|.. .....+|+.|+|++|+|+.+.++..|+.|..|++++|.|+
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcch
Confidence            345568888888754 68999999999999999999988 5545799999999999999999999999999999999999


Q ss_pred             ccCCC-CCCCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557          463 RIGHG-NILSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       463 ~IP~~-~f~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~  505 (507)
                      .+..- .+..|+.+++++|.+..+..  +..+..|...+++.|.+.
T Consensus       154 ~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  154 DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            99873 47799999999999988777  588888888888877653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.24  E-value=1.1e-07  Score=103.81  Aligned_cols=117  Identities=17%  Similarity=0.194  Sum_probs=52.0

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCc
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is  462 (507)
                      ++|+|+.|+++.+| .++. --|+.|-+++|.++.+|...-. .+|..||.+.|.|..+|. ++.|.+|+.|++..|++.
T Consensus       124 t~l~ls~NqlS~lp~~lC~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  124 TFLDLSSNQLSHLPDGLCD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             HHhhhccchhhcCChhhhc-CcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh
Confidence            44444444444444 2222 2244444444444444442222 344444444444444432 444444444444444444


Q ss_pred             ccCCCCCC-CCCEEEcCCCCC-CCCCCCCCCCcCCeeeCCCcc
Q 010557          463 RIGHGNIL-SKPVFWLSFKLF-EFLTIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       463 ~IP~~~f~-sL~~L~LS~N~L-s~L~~L~nL~~LscnlIs~n~  503 (507)
                      .+|.+... .|..|+++.|.| .++-.+.+++.|...++.+|+
T Consensus       203 ~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  203 DLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             hCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence            44443222 334455555555 233444555555555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.24  E-value=2.1e-07  Score=101.79  Aligned_cols=124  Identities=20%  Similarity=0.233  Sum_probs=90.1

Q ss_pred             hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECC
Q 010557          358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLS  435 (507)
Q Consensus       358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS  435 (507)
                      +.++++|++.|... ..+..++.||  |+.|.+++|+++.+| .++.+..|..||.+.|.|..+++.... .+|+.|++.
T Consensus       121 ~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  121 EALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             hHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence            33466676665532 2455667776  789999999999999 899999999999999999998885443 567777777


Q ss_pred             CCCCCCCcC-CCCCCCccEEEccCCCCcccCCC--CCCCCCEEEcCCCCCCCC
Q 010557          436 RNKINTIEG-LREMTRLRVLDLSYNRIFRIGHG--NILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       436 ~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~L  485 (507)
                      .|++..+|. +..| .|..||++.|+|+.||..  .+..|+.|.|.+|.+..+
T Consensus       198 Rn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  198 RNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence            777777654 5544 477777777777777763  344666777777777554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=2.4e-08  Score=111.35  Aligned_cols=105  Identities=26%  Similarity=0.387  Sum_probs=89.5

Q ss_pred             hhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLD  455 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld  455 (507)
                      .++-+| .++.|+|++|+++.+..+..|+.|+.|||++|.+..++..... .+|+.|+|++|.++.+-++.+|.+|+.||
T Consensus       182 SLqll~-ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LD  260 (1096)
T KOG1859|consen  182 SLQLLP-ALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLD  260 (1096)
T ss_pred             HHHHHH-HhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccc
Confidence            344344 4689999999999888999999999999999999999885544 67999999999999999999999999999


Q ss_pred             ccCCCCcccCC----CCCCCCCEEEcCCCCC
Q 010557          456 LSYNRIFRIGH----GNILSKPVFWLSFKLF  482 (507)
Q Consensus       456 LS~N~Is~IP~----~~f~sL~~L~LS~N~L  482 (507)
                      |++|-|.....    +.+..|+.|||.+|.+
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            99999986543    4455778899999988

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.23  E-value=8e-07  Score=92.12  Aligned_cols=116  Identities=22%  Similarity=0.265  Sum_probs=58.8

Q ss_pred             CCccccccchhhhcccc-CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCC-CCCCCcEEECCCCCCCCCc
Q 010557          367 LSEEILHANSVIRSLNS-SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIE  443 (507)
Q Consensus       367 Ln~~il~~~s~l~~Lp~-sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~s-f~~sL~~LdLS~NkLs~Lp  443 (507)
                      +..+.+..+.....+.. .|+.|++++|.+..+| .+..+++|+.|++++|.|..++... ....|..|++++|+|+.+|
T Consensus       123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~  202 (394)
T COG4886         123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP  202 (394)
T ss_pred             cCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence            33333333333333332 4555666666666554 5555666666666666666655543 2245556666666666655


Q ss_pred             CC-CCCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCC
Q 010557          444 GL-REMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLF  482 (507)
Q Consensus       444 ~L-~~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~L  482 (507)
                      .. ..+..|..|.+++|++..++.  ..+..+..+.+..|++
T Consensus       203 ~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             hhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence            43 333445666666663332222  3334444455555555

>PLN03210 Resistant to P

Probab=98.09  E-value=2.4e-05  Score=93.15  Aligned_cols=106  Identities=16%  Similarity=0.157  Sum_probs=71.9

Q ss_pred             chhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCC-CCCCcCCCCCCCcc
Q 010557          375 NSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNK-INTIEGLREMTRLR  452 (507)
Q Consensus       375 ~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~Nk-Ls~Lp~L~~L~sL~  452 (507)
                      +..+..+|..|+.|++.+|.++.+|....+.+|+.|+|++|.|..++.+... .+|+.|+|++|. +..+|.+..+++|+
T Consensus       581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le  660 (1153)
T PLN03210        581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE  660 (1153)
T ss_pred             CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCccc
Confidence            3445667777888888888888888333567888888888887777665433 677888887653 56667777777777


Q ss_pred             EEEccCCC-CcccCC--CCCCCCCEEEcCCC
Q 010557          453 VLDLSYNR-IFRIGH--GNILSKPVFWLSFK  480 (507)
Q Consensus       453 ~LdLS~N~-Is~IP~--~~f~sL~~L~LS~N  480 (507)
                      .|+|++|. +..+|.  +.+.+|+.|+++++
T Consensus       661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             EEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            77777653 455554  34456666777663

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=1.5e-06  Score=92.88  Aligned_cols=117  Identities=24%  Similarity=0.251  Sum_probs=83.4

Q ss_pred             cCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCCCCc---CCCCCCCccEE
Q 010557          383 SSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIE---GLREMTRLRVL  454 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~sL~~L  454 (507)
                      ..++.|.|+.|+|+  .+- .+..+++|..|+|..|.+-.+.....  +..|+.|||++|++-..+   ..+.|+.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            34566777777776  333 56677888888998886332222211  278999999999988765   37889999999


Q ss_pred             EccCCCCcccC--C-------CCCCCCCEEEcCCCCCCC------CCCCCCCCcCC--eeeC
Q 010557          455 DLSYNRIFRIG--H-------GNILSKPVFWLSFKLFEF------LTIIPNCKRLS--CNLY  499 (507)
Q Consensus       455 dLS~N~Is~IP--~-------~~f~sL~~L~LS~N~Ls~------L~~L~nL~~Ls--cnlI  499 (507)
                      +++.+.|..|.  .       ..|+.|+.|++..|+|..      +..++++.+|.  |+++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            99999998653  3       468899999999999933      34455566655  3544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=1.1e-05  Score=79.26  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=87.9

Q ss_pred             CCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC--
Q 010557          367 LSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI--  442 (507)
Q Consensus       367 Ln~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L--  442 (507)
                      +.+.-+..+..++.+-.....++|+.|.|..++.|..++.|..|.|.+|.|+.|.+....  .+|..|.|.+|.|..+  
T Consensus        26 LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d  105 (233)
T KOG1644|consen   26 LRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD  105 (233)
T ss_pred             cccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh
Confidence            333333334444444445678999999999999999999999999999999999995433  7899999999999886  


Q ss_pred             -cCCCCCCCccEEEccCCCCcccCC------CCCCCCCEEEcC
Q 010557          443 -EGLREMTRLRVLDLSYNRIFRIGH------GNILSKPVFWLS  478 (507)
Q Consensus       443 -p~L~~L~sL~~LdLS~N~Is~IP~------~~f~sL~~L~LS  478 (507)
                       ..+..|++|+.|.+-+|.++....      -.+++|+.|+++
T Consensus       106 l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  106 LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence             458889999999999999987655      356677777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.96  E-value=4.9e-06  Score=82.49  Aligned_cols=122  Identities=19%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             cCCcEEEccCCCCC-----CCC-CCCCCCCCCEEEccCCCCCCcCC----CCCC--CCCcEEECCCCCCCCC-----c-C
Q 010557          383 SSSAVAHIAGIGLK-----AIP-TISHFSSLRSVNLSNNFIVHIPT----GSMP--KGLHTLNLSRNKINTI-----E-G  444 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt-----~LP-~L~~L~sL~~LdLS~N~Is~Ipp----~sf~--~sL~~LdLS~NkLs~L-----p-~  444 (507)
                      ..|+.|++++|.++     .+. .+..+++|+.|+|++|.+.....    ..+.  .+|+.|+|++|.|+..     . .
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            45677777777776     222 45556677777777777663110    0011  4677777777776642     1 2


Q ss_pred             CCCCCCccEEEccCCCCcccCC-----C---CCCCCCEEEcCCCCCC------CCCCCCCCCcCCeeeCCCccC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGH-----G---NILSKPVFWLSFKLFE------FLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~-----~---~f~sL~~L~LS~N~Ls------~L~~L~nL~~LscnlIs~n~~  504 (507)
                      +..+++|+.|++++|.++....     .   ....|+.|++++|.|.      ....+..+.+|....+++|.+
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            5556677777777777663111     1   1246677777777663      123344445566655555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.91  E-value=3.7e-07  Score=102.06  Aligned_cols=119  Identities=21%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCC--CCCCccEEEccCCCC
Q 010557          385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLR--EMTRLRVLDLSYNRI  461 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~--~L~sL~~LdLS~N~I  461 (507)
                      |...++++|.|..+. .+.-++.|+.|||++|.++.+....-..+|++|||+.|.|..+|.++  .+ .|..|+|++|-+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL  244 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH
Confidence            345567777777666 66667777777777777777663322367777777777777776533  23 377777777777


Q ss_pred             cccCC-CCCCCCCEEEcCCCCCCCCCCCCCCC---cCCeeeCCCccC
Q 010557          462 FRIGH-GNILSKPVFWLSFKLFEFLTIIPNCK---RLSCNLYNSKSH  504 (507)
Q Consensus       462 s~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~---~LscnlIs~n~~  504 (507)
                      +.+.. ..+.+|..|+|++|.|+...++.-|+   .|.-.++.+|++
T Consensus       245 ~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  245 TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            76543 56667777777777775544443333   344455555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.87  E-value=3.3e-06  Score=89.50  Aligned_cols=89  Identities=29%  Similarity=0.415  Sum_probs=75.5

Q ss_pred             CCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCC
Q 010557          394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG  467 (507)
Q Consensus       394 ~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~  467 (507)
                      -....|  +|..|++|+.|+|++|.|+.|.++.|-  ..|+.|.|..|+|..+..  |.++..|++|+|.+|+|+.+-.+
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            334556  899999999999999999999999887  789999999999999864  89999999999999999998888


Q ss_pred             CCC---CCCEEEcCCCCC
Q 010557          468 NIL---SKPVFWLSFKLF  482 (507)
Q Consensus       468 ~f~---sL~~L~LS~N~L  482 (507)
                      .|.   .|..|+|-.|.+
T Consensus       341 aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cccccceeeeeehccCcc
Confidence            777   555667666655

>PLN03210 Resistant to P

Probab=97.77  E-value=0.00015  Score=86.37  Aligned_cols=98  Identities=23%  Similarity=0.284  Sum_probs=61.7

Q ss_pred             cCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCC-CCCCcCCCCCCCCCcEEECCCCC-CCCCcC-CCCCCCccEEEccC
Q 010557          383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNN-FIVHIPTGSMPKGLHTLNLSRNK-INTIEG-LREMTRLRVLDLSY  458 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N-~Is~Ipp~sf~~sL~~LdLS~Nk-Ls~Lp~-L~~L~sL~~LdLS~  458 (507)
                      ..|+.|++.+|.|..++ .+..+++|+.|+|+++ .+..++.....++|+.|+|++|. +..+|. +..|++|+.|+|++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            45677778777777776 6777777777777764 35566554434677777777754 445554 66677777777766


Q ss_pred             C-CCcccCCC-CCCCCCEEEcCCC
Q 010557          459 N-RIFRIGHG-NILSKPVFWLSFK  480 (507)
Q Consensus       459 N-~Is~IP~~-~f~sL~~L~LS~N  480 (507)
                      | .+..+|.. .+.+|+.|+|+++
T Consensus       691 c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        691 CENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCcCccCCcCCCCCCCEEeCCCC
Confidence            4 45556553 2334555554443

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=97.72  E-value=6.5e-05  Score=84.16  Aligned_cols=86  Identities=21%  Similarity=0.293  Sum_probs=69.6

Q ss_pred             chhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCC-
Q 010557          375 NSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LRE-  447 (507)
Q Consensus       375 ~s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~-  447 (507)
                      ...+..++ .|+.|+|++|.|+ .+| .+..+++|+.|+|++|.|++..+..+.  .+|+.|+|++|.|++ +|. +.. 
T Consensus       435 p~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        435 PNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence            34455564 4799999999998 788 899999999999999999986665443  789999999999997 564 544 


Q ss_pred             CCCccEEEccCCCC
Q 010557          448 MTRLRVLDLSYNRI  461 (507)
Q Consensus       448 L~sL~~LdLS~N~I  461 (507)
                      +..+..+++.+|..
T Consensus       514 ~~~~~~l~~~~N~~  527 (623)
T PLN03150        514 LLHRASFNFTDNAG  527 (623)
T ss_pred             cccCceEEecCCcc
Confidence            34678899999864

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=2.7e-05  Score=58.26  Aligned_cols=40  Identities=38%  Similarity=0.513  Sum_probs=32.1

Q ss_pred             CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCcccCC
Q 010557          427 KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGH  466 (507)
Q Consensus       427 ~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~  466 (507)
                      ++|+.|+|++|+|+.++. +..|++|+.|+|++|+|+.++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            368888999999988887 8889999999999999887753

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.57  E-value=0.0001  Score=72.61  Aligned_cols=99  Identities=21%  Similarity=0.304  Sum_probs=64.0

Q ss_pred             cEEEccCCCCCCCCCCC-CCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc-CCCC-CCCccEEEccCCCCc
Q 010557          386 AVAHIAGIGLKAIPTIS-HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-GLRE-MTRLRVLDLSYNRIF  462 (507)
Q Consensus       386 t~L~LS~N~Lt~LP~L~-~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp-~L~~-L~sL~~LdLS~N~Is  462 (507)
                      +.+++.+.++..+..++ .+.+...+||++|.|..+........|++|.|.+|+|+.|. .+.. +++|..|.|.+|+|.
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            45677777666554322 23456677778887777765544467778888888887774 3433 456777778887777


Q ss_pred             ccCC----CCCCCCCEEEcCCCCCCC
Q 010557          463 RIGH----GNILSKPVFWLSFKLFEF  484 (507)
Q Consensus       463 ~IP~----~~f~sL~~L~LS~N~Ls~  484 (507)
                      .+..    ..++.|+.|.+-+|+++.
T Consensus       102 ~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen  102 ELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             hhhhcchhccCCccceeeecCCchhc
Confidence            6543    455677777777777633

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.55  E-value=2.8e-05  Score=77.14  Aligned_cols=123  Identities=25%  Similarity=0.332  Sum_probs=82.4

Q ss_pred             ccccccCCccccc--cchhhhcccc--CCcEEEccCCCCCC-----CC-CCCCC-CCCCEEEccCCCCCCcCC----CCC
Q 010557          361 RRSEINLSEEILH--ANSVIRSLNS--SSAVAHIAGIGLKA-----IP-TISHF-SSLRSVNLSNNFIVHIPT----GSM  425 (507)
Q Consensus       361 ~~ldLsLn~~il~--~~s~l~~Lp~--sLt~L~LS~N~Lt~-----LP-~L~~L-~sL~~LdLS~N~Is~Ipp----~sf  425 (507)
                      .+..+.++++.+.  ....+..+..  .|+.|++++|.+..     +. .+..+ ++|+.|+|++|.|+.-..    ..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            3334455444443  2233333333  48999999999872     22 45666 899999999999884211    112


Q ss_pred             C--CCCcEEECCCCCCCC-----Cc-CCCCCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCCC
Q 010557          426 P--KGLHTLNLSRNKINT-----IE-GLREMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLFE  483 (507)
Q Consensus       426 ~--~sL~~LdLS~NkLs~-----Lp-~L~~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~Ls  483 (507)
                      .  .+|+.|+|++|.+++     +. .+..+++|+.|+|++|.|+....       ..++.|+.|++++|.+.
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            1  579999999999884     21 25566799999999999874332       34568999999999884

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.45  E-value=8.1e-05  Score=55.65  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=28.9

Q ss_pred             CCcEEEccCCCCCCCCC-CCCCCCCCEEEccCCCCCCcCC
Q 010557          384 SSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPT  422 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP~-L~~L~sL~~LdLS~N~Is~Ipp  422 (507)
                      .|++|++++|+|+.+|. |..|++|+.|+|++|.|+.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46788888888888874 8888888888888888877654

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.33  E-value=9.2e-06  Score=75.99  Aligned_cols=85  Identities=25%  Similarity=0.342  Sum_probs=64.4

Q ss_pred             CcEEEccCCCCCCCC-CC-CCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCC
Q 010557          385 SAVAHIAGIGLKAIP-TI-SHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNR  460 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP-~L-~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~  460 (507)
                      |+..+|++|.++.+| .| ..++.++.|+|++|.|+.+|..... +.|+.|+++.|.|...|. +..|.+|..|+...|.
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence            566788888888887 44 4456888888888888888876332 678888888888887664 5558888888888888


Q ss_pred             CcccCCCCC
Q 010557          461 IFRIGHGNI  469 (507)
Q Consensus       461 Is~IP~~~f  469 (507)
                      +..||-..|
T Consensus       135 ~~eid~dl~  143 (177)
T KOG4579|consen  135 RAEIDVDLF  143 (177)
T ss_pred             cccCcHHHh
Confidence            888876543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00012  Score=78.64  Aligned_cols=145  Identities=19%  Similarity=0.190  Sum_probs=99.8

Q ss_pred             hhcccccccCCccccccc----hhhhccccCCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCC--cCC--CCCC
Q 010557          358 HLTRRSEINLSEEILHAN----SVIRSLNSSSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVH--IPT--GSMP  426 (507)
Q Consensus       358 qL~~~ldLsLn~~il~~~----s~l~~Lp~sLt~L~LS~N~Lt~LP---~L~~L~sL~~LdLS~N~Is~--Ipp--~sf~  426 (507)
                      ++..+.+|+|+.+++...    .....|| .|+.|+|+.|.+...-   .-..+++|+.|.|+.+.|+-  +..  ..| 
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f-  221 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF-  221 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC-
Confidence            445667788888777633    3334455 4789999999887432   23467889999999888873  111  222 


Q ss_pred             CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCC----CCCCCCCEEEcCCCCCCCCCC--------CCCCC
Q 010557          427 KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLFEFLTI--------IPNCK  492 (507)
Q Consensus       427 ~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~L~~--------L~nL~  492 (507)
                      ++|..|+|..|..-.+..  ..-+..|+.|+|++|++-.++.    +.|+.|+.|+++.+.|..+..        .....
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            689999999996444432  5557889999999999988775    678899999999998844321        23445


Q ss_pred             cCCeeeCCCccC
Q 010557          493 RLSCNLYNSKSH  504 (507)
Q Consensus       493 ~LscnlIs~n~~  504 (507)
                      .|....+..|.+
T Consensus       302 kL~~L~i~~N~I  313 (505)
T KOG3207|consen  302 KLEYLNISENNI  313 (505)
T ss_pred             cceeeecccCcc
Confidence            566666665554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.84  E-value=0.0028  Score=68.39  Aligned_cols=33  Identities=15%  Similarity=-0.004  Sum_probs=24.4

Q ss_pred             CCccEEEccCCCCcccCCCCCCCCCEEEcCCCC
Q 010557          449 TRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKL  481 (507)
Q Consensus       449 ~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~  481 (507)
                      .+|+.|++++|....+|...-.+|+.|.++.|.
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~  188 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ  188 (426)
T ss_pred             CcccEEEecCCCcccCcccccccCcEEEecccc
Confidence            468888888888776666555688888887663

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.75  E-value=0.00013  Score=68.52  Aligned_cols=66  Identities=29%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             CCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCcccCC
Q 010557          401 ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIGH  466 (507)
Q Consensus       401 L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~  466 (507)
                      +.....|+..+|++|.+..+|+..-.  ..++.|+|++|+|+.+|. +..++.|+.|+++.|.|...|.
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~  117 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPR  117 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchH
Confidence            33344444445555555555442221  244555555555555543 5555555555555555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.63  E-value=0.00098  Score=67.47  Aligned_cols=81  Identities=25%  Similarity=0.407  Sum_probs=58.2

Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCC-----CCCCCCCcEEECCCCCCCCC---cCCCCCCCccEEEc
Q 010557          385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPT-----GSMPKGLHTLNLSRNKINTI---EGLREMTRLRVLDL  456 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp-----~sf~~sL~~LdLS~NkLs~L---p~L~~L~sL~~LdL  456 (507)
                      |+.|.+.+..++.+..|..|++|+.|.++.|.+.....     ... ++|++|+|++|+|..+   ..+..+.+|..|++
T Consensus        45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            45667777788877788888899999999984332221     111 6889999999988754   45777778888888


Q ss_pred             cCCCCcccCC
Q 010557          457 SYNRIFRIGH  466 (507)
Q Consensus       457 S~N~Is~IP~  466 (507)
                      ..|..+.+..
T Consensus       124 ~n~~~~~l~d  133 (260)
T KOG2739|consen  124 FNCSVTNLDD  133 (260)
T ss_pred             ccCCcccccc
Confidence            8887776443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.0001  Score=75.73  Aligned_cols=78  Identities=26%  Similarity=0.279  Sum_probs=56.6

Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC---CCCCCCccEEEccCCCC
Q 010557          385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMTRLRVLDLSYNRI  461 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~---L~~L~sL~~LdLS~N~I  461 (507)
                      +..|++-|+.|..|.-...|+.|+.|.||-|.|+.+.+..-.++|+.|+|..|.|..+..   +.+|++|++|-|..|.-
T Consensus        21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             hhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            466788888888877556778888888888888777664433677777777777777643   67777777777777765


Q ss_pred             c
Q 010557          462 F  462 (507)
Q Consensus       462 s  462 (507)
                      .
T Consensus       101 c  101 (388)
T KOG2123|consen  101 C  101 (388)
T ss_pred             c
Confidence            4

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.10  E-value=0.0026  Score=74.43  Aligned_cols=96  Identities=22%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             CCcEEEccCCC--CCCCC--CCCCCCCCCEEEccCCC-CCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEc
Q 010557          384 SSAVAHIAGIG--LKAIP--TISHFSSLRSVNLSNNF-IVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDL  456 (507)
Q Consensus       384 sLt~L~LS~N~--Lt~LP--~L~~L~sL~~LdLS~N~-Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdL  456 (507)
                      .|+.|.+.+|.  +..++  .|..++.|+.|||++|. +..+|..... -+|++|+|++..|+.+|. +.+|..|.+||+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence            36777777775  56666  47778888888888663 5556553332 578888888888888774 888888888888


Q ss_pred             cCCCCc-ccCC--CCCCCCCEEEcCC
Q 010557          457 SYNRIF-RIGH--GNILSKPVFWLSF  479 (507)
Q Consensus       457 S~N~Is-~IP~--~~f~sL~~L~LS~  479 (507)
                      ..+... .++.  ..+.+|++|.+..
T Consensus       626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  626 EVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccchhhhcccccEEEeec
Confidence            877543 3332  2245777765543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.99  E-value=0.0056  Score=69.98  Aligned_cols=123  Identities=20%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             cccccccCCccccc-cchhhhccccCCcEEEccCCCCCC--CC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECC
Q 010557          360 TRRSEINLSEEILH-ANSVIRSLNSSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS  435 (507)
Q Consensus       360 ~~~ldLsLn~~il~-~~s~l~~Lp~sLt~L~LS~N~Lt~--LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS  435 (507)
                      +.++|++....... -+..++.+-+.|+.|.+.+-.+..  +- -..+|++|..||+|+..|+.+....-.++|+.|-+.
T Consensus       124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMR  203 (699)
T ss_pred             hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhcc
Confidence            35555554333322 233455555568999999877752  22 467889999999999999988444334788888887


Q ss_pred             CCCCCCC---cCCCCCCCccEEEccCCCCcccCC---------CCCCCCCEEEcCCCCC
Q 010557          436 RNKINTI---EGLREMTRLRVLDLSYNRIFRIGH---------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       436 ~NkLs~L---p~L~~L~sL~~LdLS~N~Is~IP~---------~~f~sL~~L~LS~N~L  482 (507)
                      +=.+..-   -.+.+|++|++||+|.......+.         ..++.|+.|+.|+..+
T Consensus       204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            7666653   357789999999999876654331         4577899999998766

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.96  E-value=0.0043  Score=72.64  Aligned_cols=98  Identities=24%  Similarity=0.263  Sum_probs=81.1

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCC--CCCcCCCCCC--CCCcEEECCCCC-CCCCcC-CCCCCCccEEEcc
Q 010557          384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNF--IVHIPTGSMP--KGLHTLNLSRNK-INTIEG-LREMTRLRVLDLS  457 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~--Is~Ipp~sf~--~sL~~LdLS~Nk-Ls~Lp~-L~~L~sL~~LdLS  457 (507)
                      .++.+.+.+|.+..++.-...+.|+.|-+..|.  +..++...|.  +.|+.|||++|. +..+|. ++.|-+|+.|+|+
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            357889999999988844455689999999996  7778776665  899999999875 777886 8999999999999


Q ss_pred             CCCCcccCCC--CCCCCCEEEcCCCC
Q 010557          458 YNRIFRIGHG--NILSKPVFWLSFKL  481 (507)
Q Consensus       458 ~N~Is~IP~~--~f~sL~~L~LS~N~  481 (507)
                      +..|+.+|.+  .+..|.+|++..+.
T Consensus       604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  604 DTGISHLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             CCCccccchHHHHHHhhheecccccc
Confidence            9999999984  56688888888765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.0039  Score=64.92  Aligned_cols=96  Identities=19%  Similarity=0.251  Sum_probs=63.7

Q ss_pred             cCCccccccchhhh---ccccCCcEEEccCCCCCCC---C-CCCCCCCCCEEEccCCCCCCcCCCC-CC-CCCcEEECCC
Q 010557          366 NLSEEILHANSVIR---SLNSSSAVAHIAGIGLKAI---P-TISHFSSLRSVNLSNNFIVHIPTGS-MP-KGLHTLNLSR  436 (507)
Q Consensus       366 sLn~~il~~~s~l~---~Lp~sLt~L~LS~N~Lt~L---P-~L~~L~sL~~LdLS~N~Is~Ipp~s-f~-~sL~~LdLS~  436 (507)
                      .+++.++...+.+.   ..-..++.|+|.+|.|+..   - -+.+|+.|+.|+|++|.+...+... ++ .+|++|-|.+
T Consensus        51 vln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   51 VLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG  130 (418)
T ss_pred             eecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence            34555555444433   3334467789999998843   3 4678899999999999888755543 34 7888888888


Q ss_pred             CCCCCC--c-CCCCCCCccEEEccCCCC
Q 010557          437 NKINTI--E-GLREMTRLRVLDLSYNRI  461 (507)
Q Consensus       437 NkLs~L--p-~L~~L~sL~~LdLS~N~I  461 (507)
                      ..+..-  . .+..++.++.|.++.|.+
T Consensus       131 T~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  131 TGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             CCCChhhhhhhhhcchhhhhhhhccchh
Confidence            777652  2 256666666666666643

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.37  E-value=0.066  Score=58.06  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             ccccCCcEEEccC-CCCCCCC-CCCCCCCCCEEEccCC-CCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEc
Q 010557          380 SLNSSSAVAHIAG-IGLKAIP-TISHFSSLRSVNLSNN-FIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDL  456 (507)
Q Consensus       380 ~Lp~sLt~L~LS~-N~Lt~LP-~L~~L~sL~~LdLS~N-~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdL  456 (507)
                      .+|..|+.|.+++ +.++.+| .+  ..+|+.|.|++| .|..+     +.+|..|+|+.|.+..+..+.  .+|+.|.+
T Consensus        69 ~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n~~~~L~~LP--ssLk~L~I  139 (426)
T PRK15386         69 VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGSATDSIKNVP--NGLTSLSI  139 (426)
T ss_pred             CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCCCCcccccCc--chHhheec
Confidence            5788888888887 5567777 44  358888888887 55443     346788888877665443221  24667776


Q ss_pred             cCCC-C--cccCCCCC-CCCCEEEcCCCCCC
Q 010557          457 SYNR-I--FRIGHGNI-LSKPVFWLSFKLFE  483 (507)
Q Consensus       457 S~N~-I--s~IP~~~f-~sL~~L~LS~N~Ls  483 (507)
                      .+++ +  ..++. .+ .+|+.|.++++...
T Consensus       140 ~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        140 NSYNPENQARIDN-LISPSLKTLSLTGCSNI  169 (426)
T ss_pred             ccccccccccccc-ccCCcccEEEecCCCcc
Confidence            4432 2  22332 34 48999999887753

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.00087  Score=69.07  Aligned_cols=92  Identities=21%  Similarity=0.218  Sum_probs=66.3

Q ss_pred             ccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCC
Q 010557          363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKI  439 (507)
Q Consensus       363 ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkL  439 (507)
                      ..|+.-+.-+..++....+| .|++|.|+-|.|+.+..|..++.|++|+|..|.|..+.....+   ++|+.|.|..|.-
T Consensus        22 kKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   22 KKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             hhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            34566666677777777765 4688888888888888788888888888888888887764333   6788888888876


Q ss_pred             CCCcC-------CCCCCCccEEE
Q 010557          440 NTIEG-------LREMTRLRVLD  455 (507)
Q Consensus       440 s~Lp~-------L~~L~sL~~Ld  455 (507)
                      .+-.+       ++-|++|+.||
T Consensus       101 c~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  101 CGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccccchhHHHHHHHHcccchhcc
Confidence            65311       55566666653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.03  E-value=0.0087  Score=60.76  Aligned_cols=83  Identities=20%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCC--CCCC-CcC-CCCCCCccEEEccCCCCcccC---C-CCCCC
Q 010557          400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN--KINT-IEG-LREMTRLRVLDLSYNRIFRIG---H-GNILS  471 (507)
Q Consensus       400 ~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~N--kLs~-Lp~-L~~L~sL~~LdLS~N~Is~IP---~-~~f~s  471 (507)
                      ..-.+..|+.|.+.+-.++.+....+.++|+.|.+|.|  .++. ++- ...+++|++|+|++|+|..+.   . ..+.+
T Consensus        38 l~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            44566777777777777777766555589999999999  4443 433 445699999999999988532   2 34556


Q ss_pred             CCEEEcCCCCC
Q 010557          472 KPVFWLSFKLF  482 (507)
Q Consensus       472 L~~L~LS~N~L  482 (507)
                      |..|++.++..
T Consensus       118 L~~Ldl~n~~~  128 (260)
T KOG2739|consen  118 LKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcccCCc
Confidence            66677666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.94  E-value=0.086  Score=45.58  Aligned_cols=91  Identities=22%  Similarity=0.367  Sum_probs=54.9

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~  458 (507)
                      |+.+.+.. .+..|+  .|..+++|+.|.+..+ +..+....|.  ..|..+.+.. .+..++.  |..++.|+.+.+..
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence            56667663 577776  6888888999988875 8888887776  4788888865 5555543  77788898888877


Q ss_pred             CCCcccCCCCCC--CCCEEEcCC
Q 010557          459 NRIFRIGHGNIL--SKPVFWLSF  479 (507)
Q Consensus       459 N~Is~IP~~~f~--sL~~L~LS~  479 (507)
                      | +..|+...|.  .|+.+.+..
T Consensus        91 ~-~~~i~~~~f~~~~l~~i~~~~  112 (129)
T PF13306_consen   91 N-ITEIGSSSFSNCNLKEINIPS  112 (129)
T ss_dssp             T--BEEHTTTTTT-T--EEE-TT
T ss_pred             c-ccEEchhhhcCCCceEEEECC
Confidence            6 7777776665  555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.38  E-value=0.013  Score=66.98  Aligned_cols=112  Identities=22%  Similarity=0.264  Sum_probs=78.8

Q ss_pred             CCcEEEccCCCCC--CCC--CCCCCCCCCEEEccCCCCCCcCC----CCCCCCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557          384 SSAVAHIAGIGLK--AIP--TISHFSSLRSVNLSNNFIVHIPT----GSMPKGLHTLNLSRNKINTIEGLREMTRLRVLD  455 (507)
Q Consensus       384 sLt~L~LS~N~Lt--~LP--~L~~L~sL~~LdLS~N~Is~Ipp----~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld  455 (507)
                      .|+.|+++|...-  .-|  --..||+|+.|.+++-.+..-.-    ..| ++|..||+|+..|+.+.+++.|++|++|.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCcHHHhccccHHHHh
Confidence            4788899887643  223  34568999999999877654321    223 69999999999999999999999999998


Q ss_pred             ccCCCCcccCC----CCCCCCCEEEcCCCCC-----------CCCCCCCCCCcCCe
Q 010557          456 LSYNRIFRIGH----GNILSKPVFWLSFKLF-----------EFLTIIPNCKRLSC  496 (507)
Q Consensus       456 LS~N~Is~IP~----~~f~sL~~L~LS~N~L-----------s~L~~L~nL~~Lsc  496 (507)
                      +.+=.|..-..    -.+..|+.|++|....           +....+++|+-|+|
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC  257 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence            86655553221    3456899999997543           22234556666666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=92.11  E-value=0.077  Score=56.21  Aligned_cols=100  Identities=21%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             cCCcEEEccCCCCCCCC------CCCCCCCCCEEEccCCCCCCcCC----CCC-C-CCCcEEECCCCCCCCC------cC
Q 010557          383 SSSAVAHIAGIGLKAIP------TISHFSSLRSVNLSNNFIVHIPT----GSM-P-KGLHTLNLSRNKINTI------EG  444 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP------~L~~L~sL~~LdLS~N~Is~Ipp----~sf-~-~sL~~LdLS~NkLs~L------p~  444 (507)
                      ..|+++++++|.+..-+      .|...+.|+.+.++.|.|..=.-    ..| . ++|+.|||..|-++..      ..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            34677777777776433      35556777777777776653111    111 1 6777777777777652      12


Q ss_pred             CCCCCCccEEEccCCCCcccCC--------CCCCCCCEEEcCCCCC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGH--------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~--------~~f~sL~~L~LS~N~L  482 (507)
                      +..++.|+.|+++++.+..=..        ..+++|..|.|.+|.|
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            6666777777777777764222        3466777777777776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.60  E-value=0.1  Score=33.38  Aligned_cols=21  Identities=33%  Similarity=0.341  Sum_probs=14.6

Q ss_pred             CccEEEccCCCCcccCCCCCCC
Q 010557          450 RLRVLDLSYNRIFRIGHGNILS  471 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~~~f~s  471 (507)
                      +|+.|+|++|+|+.||.. |.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT
T ss_pred             CccEEECCCCcCEeCChh-hcC
Confidence            467777777777777765 543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.06  E-value=0.67  Score=39.96  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=53.5

Q ss_pred             CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCCCCC---CC
Q 010557          400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGNIL---SK  472 (507)
Q Consensus       400 ~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f~---sL  472 (507)
                      .|..+++|+.+.+.. .+..|....|.  .+|+.+.+..+ +..++.  |..+..|+.+.+.. .+..++...|.   .|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            678888999999985 68899998887  58999999886 887764  88898899999975 77778876665   77


Q ss_pred             CEEEcCCC
Q 010557          473 PVFWLSFK  480 (507)
Q Consensus       473 ~~L~LS~N  480 (507)
                      +.+.+..|
T Consensus        84 ~~i~~~~~   91 (129)
T PF13306_consen   84 KNIDIPSN   91 (129)
T ss_dssp             CEEEETTT
T ss_pred             cccccCcc
Confidence            77888665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.56  E-value=0.22  Score=52.32  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=38.3

Q ss_pred             ccccCCccccccch----hhhccccCCcEEEccCCCCC-CCCCC-CCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEE
Q 010557          363 SEINLSEEILHANS----VIRSLNSSSAVAHIAGIGLK-AIPTI-SHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLN  433 (507)
Q Consensus       363 ldLsLn~~il~~~s----~l~~Lp~sLt~L~LS~N~Lt-~LP~L-~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~Ld  433 (507)
                      ..+.|.++.+..=+    .+..+|. |++|+|+.|.|. .|..+ ..+.+|+.|-|.+..+.--....+.   +.++.|.
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~-l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPA-LTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCcc-ceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            33455555554222    2334443 677888888776 33333 3456666666666554432222222   3455555


Q ss_pred             CCCCC
Q 010557          434 LSRNK  438 (507)
Q Consensus       434 LS~Nk  438 (507)
                      +|.|.
T Consensus       153 mS~N~  157 (418)
T KOG2982|consen  153 MSDNS  157 (418)
T ss_pred             hccch
Confidence            55553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.44  E-value=0.088  Score=55.79  Aligned_cols=99  Identities=21%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             CCcEEEccCCCCCCCC---------------CCCCCCCCCEEEccCCCCCCcCCCCC----C--CCCcEEECCCCCCCC-
Q 010557          384 SSAVAHIAGIGLKAIP---------------TISHFSSLRSVNLSNNFIVHIPTGSM----P--KGLHTLNLSRNKINT-  441 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP---------------~L~~L~sL~~LdLS~N~Is~Ipp~sf----~--~sL~~LdLS~NkLs~-  441 (507)
                      .|+.|+|.+|.|...-               -+..-+.|+.+....|++..-+....    .  +.|+.+.++.|.|.. 
T Consensus       121 ~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e  200 (382)
T KOG1909|consen  121 DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE  200 (382)
T ss_pred             CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCc
Confidence            3566777777766221               13445677777777777766544221    1  467777777777654 


Q ss_pred             -C----cCCCCCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCC
Q 010557          442 -I----EGLREMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       442 -L----p~L~~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~L  482 (507)
                       +    .+|..++.|++|||..|-++.-..       ..|+.|+.|++++-.+
T Consensus       201 G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  201 GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence             2    236677777777777777764332       3455666777766555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.90  E-value=0.2  Score=32.85  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=18.2

Q ss_pred             CCCccEEEccCCCCcccCCCCCC
Q 010557          448 MTRLRVLDLSYNRIFRIGHGNIL  470 (507)
Q Consensus       448 L~sL~~LdLS~N~Is~IP~~~f~  470 (507)
                      |++|+.|+|++|+|+.||.+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888877664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.90  E-value=0.2  Score=32.85  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=18.2

Q ss_pred             CCCccEEEccCCCCcccCCCCCC
Q 010557          448 MTRLRVLDLSYNRIFRIGHGNIL  470 (507)
Q Consensus       448 L~sL~~LdLS~N~Is~IP~~~f~  470 (507)
                      |++|+.|+|++|+|+.||.+.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888877664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.83  E-value=0.22  Score=32.61  Aligned_cols=22  Identities=36%  Similarity=0.739  Sum_probs=16.3

Q ss_pred             CCCCCEEEccCCCCCCcCCCCC
Q 010557          404 FSSLRSVNLSNNFIVHIPTGSM  425 (507)
Q Consensus       404 L~sL~~LdLS~N~Is~Ipp~sf  425 (507)
                      |++|+.|+|++|.|+.|+++.|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4577788888888888777655

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.83  E-value=0.22  Score=32.61  Aligned_cols=22  Identities=36%  Similarity=0.739  Sum_probs=16.3

Q ss_pred             CCCCCEEEccCCCCCCcCCCCC
Q 010557          404 FSSLRSVNLSNNFIVHIPTGSM  425 (507)
Q Consensus       404 L~sL~~LdLS~N~Is~Ipp~sf  425 (507)
                      |++|+.|+|++|.|+.|+++.|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4577788888888888777655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.90  E-value=0.42  Score=29.02  Aligned_cols=16  Identities=50%  Similarity=0.679  Sum_probs=6.4

Q ss_pred             CccEEEccCCCCcccC
Q 010557          450 RLRVLDLSYNRIFRIG  465 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP  465 (507)
                      +|+.|+|++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=84.36  E-value=0.64  Score=28.20  Aligned_cols=12  Identities=50%  Similarity=0.767  Sum_probs=3.5

Q ss_pred             CCEEEccCCCCC
Q 010557          407 LRSVNLSNNFIV  418 (507)
Q Consensus       407 L~~LdLS~N~Is  418 (507)
                      |+.|+|++|.|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            333344443333

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.15  E-value=0.36  Score=30.80  Aligned_cols=18  Identities=33%  Similarity=0.571  Sum_probs=10.3

Q ss_pred             CCCEEEccCCCCCCcCCC
Q 010557          406 SLRSVNLSNNFIVHIPTG  423 (507)
Q Consensus       406 sL~~LdLS~N~Is~Ipp~  423 (507)
                      +|++|+|++|.|+.||+.
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            355666666666655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-04

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
            +  + +    S +++ N  N+ I  +        L  L+LS N+I+ +  L+++T+L  
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEE 89

Query: 454 LDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSC-NLYNSK 502
           L ++ NR+  +           +L          + + K L   ++ N+K
Sbjct: 90  LSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 13/70 (18%), Positives = 30/70 (42%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  +      ++    NL    +  + +     G+   N   + I ++ G++  T L+ L
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKEL 68

Query: 455 DLSYNRIFRI 464
            LS+N+I  +
Sbjct: 69  HLSHNQISDL 78

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L+   ++ H  +L  +++ NN +  I        L  L+L  N+I    GL  + ++  +
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177

Query: 455 DLSYNRI 461
           DL+  + 
Sbjct: 178 DLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
            L  + L NN +    +    K L  L++  NK+ +I  L  +++L VLDL  N I   
Sbjct: 107 CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT 165

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 18/71 (25%), Positives = 36/71 (50%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
            +K++  I +  ++  + L+ N +  I   +  K L  L L  NK+  +  L+++ +L+ 
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKS 116

Query: 454 LDLSYNRIFRI 464
           L L +N I  I
Sbjct: 117 LSLEHNGISDI 127

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 14/70 (20%), Positives = 30/70 (42%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +    T +  +S+  +  +N+ I  +        +  L L+ NK+  I+ L  +  L  L
Sbjct: 36  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWL 95

Query: 455 DLSYNRIFRI 464
            L  N++  +
Sbjct: 96  FLDENKVKDL 105

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 18/76 (23%), Positives = 33/76 (43%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREM 448
           ++    +  I  +S  + L +++L +N I  I   +    L  L LS+N I+ +  L  +
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL 199

Query: 449 TRLRVLDLSYNRIFRI 464
             L VL+L        
Sbjct: 200 KNLDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 25/67 (37%), Positives = 34/67 (50%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  + H   L S+ L NN I  I   S    L TL+L  N+I+ I  L  +T+L+ L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 455 DLSYNRI 461
            LS N I
Sbjct: 184 YLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 12/70 (17%), Positives = 31/70 (44%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +K I +   F+     NL    +    T +    +  +  + + I +++G++ +  +  L
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73

Query: 455 DLSYNRIFRI 464
            L+ N++  I
Sbjct: 74  FLNGNKLTDI 83

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  I  +++  +L  + L  N +  + +    K L +L+L  N I+ I GL  + +L  L
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 455 DLSYNRIFRI 464
            L  N+I  I
Sbjct: 140 YLGNNKITDI 149

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 6/53 (11%), Positives = 15/53 (28%)

Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
                I  I +          NL +  +       E+  +  +  + + I  +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV 61

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 401 ISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459
           +S   +LR ++L  N I  I    ++   L  L +S N+I ++ G+ ++  LRVL +S N
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125

Query: 460 RI 461
           +I
Sbjct: 126 KI 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 405 SSLRSVNLSNNF--IVHIPTG-SMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
           +    V L      I  +    S  K    L LS N I  I  L  M  LR+L L  N I
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI 82

Query: 462 FRIGHGNILSKP--VFWLSFKLFEFLTIIPNCKRL 494
            +I + + ++      W+S+     L+ I     L
Sbjct: 83  KKIENLDAVADTLEELWISYNQIASLSGIEKLVNL 117

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMT-RLRVLDLSYN 459
           +S   + + + LS N I  I + S  + L  L+L RN I  IE L  +   L  L +SYN
Sbjct: 44  LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103

Query: 460 RIFRI 464
           +I  +
Sbjct: 104 QIASL 108

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 398 IPTISHFS----SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT---IEGLREMTR 450
           I  I +      +L  + +S N I  +        L  L +S NKI     I+ L  + +
Sbjct: 82  IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 451 LRVLDLSYNRI 461
           L  L L+ N +
Sbjct: 142 LEDLLLAGNPL 152

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIEGLREMTRLR 452
            L  +  +     +  ++LS+N +  +P   +  + L  L  S N +  ++G+  + RL+
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQ 511

Query: 453 VLDLSYNRI 461
            L L  NR+
Sbjct: 512 ELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 28/236 (11%), Positives = 77/236 (32%), Gaps = 4/236 (1%)

Query: 233 PQPHRAVVLNQQGGYTSDTLEPNQATKLSKTESPGSCTGESLNKGCNGSYNEDRQSWDGF 292
               R   L         ++E       ++      C   + +       +  R  W G 
Sbjct: 266 TVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGS 325

Query: 293 QNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPSPETGKSP 352
            ++   V  + +   +  +S++ +++      +   T  + +  +   +    PE     
Sbjct: 326 DSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 385

Query: 353 ARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGL---KAIPTISHFSSLRS 409
                 +     +   +E L   S +++++   A            +       ++ +R 
Sbjct: 386 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 410 VNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYNRIFRI 464
           ++L++  +  +        +  L+LS N++  +   L  +  L VL  S N +  +
Sbjct: 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 6e-08
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMT 449
            L+A+P  ++    L  +  S+N + ++   +    L  L L  N++        L    
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 450 RLRVLDLSYNRI 461
           RL +L+L  N +
Sbjct: 534 RLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 24/114 (21%)

Query: 358 HLTRRSEINLS-------EEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSV 410
            L   + ++LS          L A   +  L         +   L+ +  +++   L+ +
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQ-------ASDNALENVDGVANLPRLQEL 513

Query: 411 NLSNNFIVHIPT----GSMPKGLHTLNLSRNKINTIEGLREMTR-----LRVLD 455
            L NN +          S P+ L  LNL  N +   EG++E        +  + 
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPR-LVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  +S+   L ++ +  N I  I        L  L L+ + I+ I  L  +T++  L
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSL 137

Query: 455 DLSYNRI 461
           +L  N  
Sbjct: 138 NLGANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 6e-12
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
           +K +  I++ + L S++L+ N I  I    S+   LH      N+I  I  +  MTRL  
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFTAYVNQITDITPVANMTRLNS 225

Query: 454 LDLSYNRI 461
           L +  N+I
Sbjct: 226 LKIGNNKI 233

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 8e-12
 Identities = 17/68 (25%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
           +  I  +++ + L S+ + NN I  + P  ++ + L  L +  N+I+ I  ++++T+L++
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ-LTWLEIGTNQISDINAVKDLTKLKM 269

Query: 454 LDLSYNRI 461
           L++  N+I
Sbjct: 270 LNVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
            + +I  I + ++L  +NL+ N I  I   S    L  L +  NKI  I  L+ +T LR 
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRE 114

Query: 454 LDLSYNRIFRIGHGNILSK-PVFWLSF-KLFEFLTIIPNCKRL 494
           L L+ + I  I     L+K     L        L+ + N   L
Sbjct: 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGL 157

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 16/70 (22%), Positives = 29/70 (41%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  + T     S+  + ++   +  I        L  LNL+ N+I  I  L  + +L  L
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL 93

Query: 455 DLSYNRIFRI 464
            +  N+I  I
Sbjct: 94  YIGTNKITDI 103

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           +  +S+ + L  + ++ + +  +   +    L++L+L+ N+I  I  L  +T L      
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207

Query: 458 YNRI 461
            N+I
Sbjct: 208 VNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 3e-11
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT---GSMPKGLHTLNLSRNKINTIEGLREMTRL 451
           +  I  +++ S L S+ L+NN + +      G +   L TL LS+N I  I  L  ++++
Sbjct: 277 ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDIRPLASLSKM 335

Query: 452 RVLDLSYNRI 461
              D +   I
Sbjct: 336 DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           I   +  +      L    +  + T    + +  L ++  K+ +I+G+  +T L  L+L+
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLN 74

Query: 458 YNRI 461
            N+I
Sbjct: 75  GNQI 78

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 6e-11
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT--GSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
           +  I  +++ + + S+NL  N  +   +   +M   L+ L ++ +K+  +  +  +T L 
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTG-LNYLTVTESKVKDVTPIANLTDLY 180

Query: 453 VLDLSYNRI 461
            L L+YN+I
Sbjct: 181 SLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
           +  +  +++ S L  + +  N I  I     + K L  LN+  N+I+ I  L  +++L  
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK-LKMLNVGSNQISDISVLNNLSQLNS 291

Query: 454 LDLSYNRI 461
           L L+ N++
Sbjct: 292 LFLNNNQL 299

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRL 451
            +  I  +   + L+ +N+ +N I  I   +    L++L L+ N++    +E +  +T L
Sbjct: 254 QISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 452 RVLDLSYNRI 461
             L LS N I
Sbjct: 314 TTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 6/58 (10%), Positives = 18/58 (31%)

Query: 407 LRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
             ++      I  I   +         L +  +  +    E+  +  L ++  ++  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 3e-12
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
            +K++  I +  ++  + L+ N +  I   +  K L  L L  NKI  +  L+++ +L+ 
Sbjct: 54  DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113

Query: 454 LDLSYNRI 461
           L L +N I
Sbjct: 114 LSLEHNGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 15/71 (21%), Positives = 30/71 (42%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
            +    T +  +S+  +  +N+ I  +        +  L L+ NK+  I+ L  +  L  
Sbjct: 32  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGW 91

Query: 454 LDLSYNRIFRI 464
           L L  N+I  +
Sbjct: 92  LFLDENKIKDL 102

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 8e-11
 Identities = 25/67 (37%), Positives = 34/67 (50%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  + H   L S+ L NN I  I   S    L TL+L  N+I+ I  L  +T+L+ L
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 180

Query: 455 DLSYNRI 461
            LS N I
Sbjct: 181 YLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 8e-11
 Identities = 21/70 (30%), Positives = 34/70 (48%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  I  +++  +L  + L  N I  + +    K L +L+L  N I+ I GL  + +L  L
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136

Query: 455 DLSYNRIFRI 464
            L  N+I  I
Sbjct: 137 YLGNNKITDI 146

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 9e-11
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREM 448
           ++    +  I  +S  + L +++L +N I  I   +    L  L LS+N I+ +  L  +
Sbjct: 137 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL 196

Query: 449 TRLRVLDLSYNRIFRIGHG---NILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYN 500
             L VL+L              N++       +        II +          
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 12/70 (17%), Positives = 30/70 (42%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +K I     F+     NL    +    T +    +  +  + + I +++G++ +  +  L
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 70

Query: 455 DLSYNRIFRI 464
            L+ N++  I
Sbjct: 71  FLNGNKLTDI 80

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +K + ++     L+S++L +N I  I        L +L L  NKI  I  L  +T+L  L
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 158

Query: 455 DLSYNRI 461
            L  N+I
Sbjct: 159 SLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 6/58 (10%), Positives = 16/58 (27%)

Query: 407 LRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
           +      +  I  I            NL +  +       E+  +  +  + + I  +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV 58

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
           G+  I  + + ++L  + L +N I  +        +  L LS N +  +  +  +  ++ 
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKT 111

Query: 454 LDLSYNRIFRI 464
           LDL+  +I  +
Sbjct: 112 LDLTSTQITDV 122

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 16/67 (23%), Positives = 33/67 (49%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           LK +  I+   S+++++L++  I  +   +    L  L L  N+I  I  L  +T L+ L
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156

Query: 455 DLSYNRI 461
            +   ++
Sbjct: 157 SIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 14/67 (20%), Positives = 35/67 (52%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  +  + + + +  + LS N + ++   +  + + TL+L+  +I  +  L  ++ L+VL
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 455 DLSYNRI 461
            L  N+I
Sbjct: 135 YLDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 13/67 (19%), Positives = 28/67 (41%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +    T +    + +++     +  I        L  L L  N+I  +  L+ +T++  L
Sbjct: 31  VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITEL 90

Query: 455 DLSYNRI 461
           +LS N +
Sbjct: 91  ELSGNPL 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  ++  ++L+ +++ N  +  +   +    L TL    NKI+ I  L  +  L  +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200

Query: 455 DLSYNRI 461
            L  N+I
Sbjct: 201 HLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 13/67 (19%), Positives = 31/67 (46%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  +  +++ S L ++   +N I  I   +    L  ++L  N+I+ +  L   + L ++
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

Query: 455 DLSYNRI 461
            L+   I
Sbjct: 223 TLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           I      ++   +    + +    T +   G+ TL+     + TIEG++ +  L  L+L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71

Query: 458 YNRI 461
            N+I
Sbjct: 72  DNQI 75

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  ++   +L  V+L NN I  +   +    L  + L+   I           L V 
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNN-LVVP 243

Query: 455 DLSYNRI 461
           ++     
Sbjct: 244 NVVKGPS 250

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +K +  +      +S+++    +   PT  +P  L +L L+ NK +       +  L  L
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF-LKSLTLTMNKGSISFKKVALPSLSYL 355

Query: 455 DLSYNRIFRIGHG 467
           DLS N +   G  
Sbjct: 356 DLSRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459
                +++ +++L+   I ++          +L++ R ++     L ++  L+ L L+ N
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMN 338

Query: 460 RIFRIGHGNILSK 472
           +         L  
Sbjct: 339 KGSISFKKVALPS 351

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT 449
            L  +P     SS ++++LS N +  + + S      L  L+LSR +I TIE      + 
Sbjct: 22  KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80

Query: 450 RLRVLDLSYNRI 461
            L  L L+ N I
Sbjct: 81  HLSNLILTGNPI 92

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE---GLREMTRLRVL 454
           + S  +SL ++      +  + +  +     L  LN++ N I++ +       +T L  +
Sbjct: 99  SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 455 DLSYNRIFRI 464
           DLSYN I  I
Sbjct: 159 DLSYNYIQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LRE 447
            L+ I          L+ +N+S+N ++ + +        L TL+ S N+I T +G     
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 448 MTRLRVLDLSYNRI 461
              L   +L+ N +
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKG----LHTLNLSRNKINTIEG-LREMT 449
                      SL  ++LS N +      S        L  L+LS N    +      + 
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399

Query: 450 RLRVLDLSYNRIFRIGHGNILS 471
            L+ LD  ++ + R+   +   
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFL 421

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTI--EGLREMTRLRVL 454
           + S+FS L+ ++LS   I  I   +   +   L  L L+ N I +        +T L  L
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 455 DLSYNRIFRI 464
                ++  +
Sbjct: 110 VAVETKLASL 119

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGS------MPKGLHTLNLSRNKINTIE-GLR 446
             K     S+ ++L  V+LS N+I  I           P+   +L++S N I+ I+    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 447 EMTRLRVLDLSYNRI 461
           +  +L  L L  N  
Sbjct: 202 QGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 400 TISHFSSLRSVNLS-NNFIVHIPTG--SMPKGLHTLNLSRNKINTIEG--LREMTRLRVL 454
                +SL ++ ++ N+F  +  +   +    L  L+LS+ ++  I       + RL++L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 455 DLSYNRIFRI 464
           ++S+N +  +
Sbjct: 503 NMSHNNLLFL 512

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRNKINTI--EGLREMTRLRV 453
                   L+ ++  ++ +  +   S    L     L++S              +T L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 454 LDLSYNRIFRIGHGNILS 471
           L ++ N        N+ +
Sbjct: 453 LKMAGNSFKDNTLSNVFA 470

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 409 SVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRI 464
           +    +  +  +P   +P     ++LS N +  +        + L+ LDLS   I  I
Sbjct: 15  TYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 27/138 (19%)

Query: 394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTG----SMPKGLHTLNLSRNKINTI----- 442
            L ++    I    +L+ +N+++NFI          ++   L  ++LS N I TI     
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN-LVHVDLSYNYIQTITVNDL 173

Query: 443 EGLREMTR-LRVLDLSYNRIFRIG--------------HGNILSKPVFWLSFKLFEFLTI 487
           + LRE  +    LD+S N I  I                GN  S  +     +    L +
Sbjct: 174 QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 488 IPNCKRLSCNLYNSKSHS 505
                    +  N +   
Sbjct: 234 HRLILGEFKDERNLEIFE 251

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query: 398 IPTISHFSSLRSV-----NLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTR 450
           I   S    L  V      L+                 +  ++L+   I  +E + +  +
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

Query: 451 LRVLDLSYNRI 461
            + L +   ++
Sbjct: 309 WQSLSIIRCQL 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           + T++   ++  ++ S+N I  +      + L  L L  N +     L     L  +DLS
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLS 256

Query: 458 YNRIFRI 464
           YN + +I
Sbjct: 257 YNELEKI 263

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-L 445
            +    L     + ++  L  V+LS N +  I        + L  L +S N++  +    
Sbjct: 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 291

Query: 446 REMTRLRVLDLSYNRIFRI 464
           + +  L+VLDLS+N +  +
Sbjct: 292 QPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LRE 447
           ++ +P     +   L  + L  N +  +P G     PK L TL++S N +  IE    + 
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQA 163

Query: 448 MTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLS 495
            T L+ L LS NR+  +    I S     +S+ L   L I    + L 
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461
              L  + L +N +          GL  ++LS N++  I      +M RL  L +S NR+
Sbjct: 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 462 FRI 464
             +
Sbjct: 285 VAL 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
           L+ I   T    +SL+++ LS+N + H+    +P  L   N+S N ++T+        + 
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTLAIP---IAVE 208

Query: 453 VLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRL 494
            LD S+N I  +     +   +  L          + N   L
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 250

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREM 448
             +         ++ + V   N+ +  +P   +   + +  LNL+  +I  I+       
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 92

Query: 449 TRLRVLDLSYNRI 461
             ++ L + +N I
Sbjct: 93  HTIQKLYMGFNAI 105

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LRE 447
           ++ I     ++  +++ + +  N I ++P     ++P  L  L L RN ++++       
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLSSLPRGIFHN 139

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
             +L  L +S N + RI   
Sbjct: 140 TPKLTTLSMSNNNLERIEDD 159

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLR 452
           L A+        +L+ ++LS+N ++H+         L  L L  N I T++ L     L+
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLK 342

Query: 453 VLDLSYNRI 461
            L LS+N  
Sbjct: 343 NLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI---EGLREMTR 450
           L  +      F  L ++ L +N IV +   +    L  L LS N  +        R + R
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH-TLKNLTLSHNDWDCNSLRALFRNVAR 365

Query: 451 LRVLDL 456
             V D 
Sbjct: 366 PAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 16/67 (23%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLS 457
           T   +     + L+N                 +    + +  +    L    ++ +L+L+
Sbjct: 32  TQDVYFGFEDITLNN--------------QKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 458 YNRIFRI 464
             +I  I
Sbjct: 78  DLQIEEI 84

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.8 bits (153), Expect = 8e-12
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
           ++     ++    R ++L    I  I   G+       ++ S N+I  ++G   + RL+ 
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKT 68

Query: 454 LDLSYNRIFRIGHGNILSKP---VFWLS 478
           L ++ NRI RIG G   + P      L+
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILT 96

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 410 VNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLRE-MTRLRVLDLSYNRIFRI 464
           V L+   I      +       L+L   KI  IE L   + +   +D S N I ++
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI---NTIEGLREM 448
            ++ +        L+++ ++NN I  I  G       L  L L+ N +     ++ L  +
Sbjct: 53  EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 449 TRLRVLDLSYNRI 461
             L  L +  N +
Sbjct: 113 KSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 432 LNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKP--VFWLSFKLFEFLTIIP 489
           + L+   I          R R LDL   +I  I +             S      L   P
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61

Query: 490 NCKRL-SCNLYN 500
             +RL +  + N
Sbjct: 62  LLRRLKTLLVNN 73

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIP--TGSMPKGLHTLNLSRNKINTI---EGLREMT 449
           ++ +        L  + L  N I  IP    +    +  L  S NK+  I      + + 
Sbjct: 585 VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 450 RLRVLDLSYNRI 461
            +  +D SYN+I
Sbjct: 645 VMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPT----GSMPKGLHTLNLS 435
           + N   + A +     +          ++   +  N +   P       M K L  L+  
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK-LGLLDCV 581

Query: 436 RNKINTIEGLREMTRLRVLDLSYNRI 461
            NK+  +E      +L  L L YN+I
Sbjct: 582 HNKVRHLEAFGTNVKLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 395 LKAIP---TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMT 449
           L+  P   ++     L  ++  +N + H+        L  L L  N+I  I  +      
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 450 RLRVLDLSYNRI 461
           ++  L  S+N++
Sbjct: 620 QVEGLGFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIP----TGSMPKGLHTLNLSRNKINTI-EGLREMTRLRV 453
               +   L +++L  N +  +       ++P  L  +++S N  ++        ++L+ 
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY-LSNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 454 LDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCN 497
             + + R      GN + +  +         L  +    ++  N
Sbjct: 781 FGIRHQRDA---EGNRILR-QWPTGITTCPSLIQL----QIGSN 816

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 19/114 (16%)

Query: 399 PTISHFSSLRSVNLS-NNFIVHIPT--GSMPKGLHTLNLSRNKINTI-----------EG 444
            + S+   L  V L     +  +P     +P+ L +LN++ N+  +            + 
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE-LQSLNIACNRGISAAQLKADWTRLADD 543

Query: 445 LREMTRLRVLDLSYNRIFRIGHGNILSK----PVFWLSFKLFEFLTIIPNCKRL 494
                ++++  + YN +        L K     +          L       +L
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKL 597

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 14/108 (12%)

Query: 395 LKAIP-TISHFSSLRSVNLS-------NNFIVHIPT--GSMPKGLHTLNLSRNKINTI-E 443
             + P    + S L++  +        N  +   PT   + P  L  L +  N I  + E
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS-LIQLQIGSNDIRKVDE 823

Query: 444 GLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNC 491
            L    +L +LD++ N    I   ++       +   L++    I  C
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPT---GSMPKGLHTLNLSRNKINTI---------EGLR 446
                  +  +V LS N I   PT    +    + T+ LS N + +I            +
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSP-ISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 447 EMTRLRVLDLSYNRIFRI 464
               L  +DL +N++  +
Sbjct: 726 NTYLLTTIDLRFNKLTSL 743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 12/82 (14%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIE------ 443
           ++ IP    +    +  +  S+N + +IP     K    + +++ S NKI +        
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 444 -GLREMTRLRVLDLSYNRIFRI 464
               +      + LSYN I + 
Sbjct: 667 MDDYKGINASTVTLSYNEIQKF 688

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 24/92 (26%)

Query: 394 GLKAIP-TISHFSSLRSVNLSNNFIVHIP---------------TGSMP------KGLHT 431
            +  I   I   + L+ +  +N+   +                   +        K L  
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 432 LNLSRNKINTI--EGLREMTRLRVLDLSYNRI 461
           + L      T   + L ++  L+ L+++ NR 
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLD 455
                  L+ +NL+ N I  I   +      L  LNLS N +  +       + ++  +D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 456 LSYNRIFRIGHGNILSKP---VFWLSFKLFEFLTIIPNCKR--LSCNLYNS 501
           L  N I  I               L       +  IP+     LS N   +
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 368 SEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSM 425
            ++    N  +  L        +       +        S L+ + L++N++  +P G  
Sbjct: 443 GDQTPSENPSLEQLFLGEN--MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 426 P--KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLF 482
                L  L+L+ N++  +        L +LD+S N++        +S  V  ++   F
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 366 NLSEEILHAN--SVIRSLNSSSAVAHIAGIGLKAIPTISHF---SSLRSVNLSNNFIVHI 420
           ++ +  L  N    +  +N ++ + H++   L+ +  +        L+ + L+ N     
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 421 PTG---SMPKGLHTLNLSRNKINTIEG-------LREMTRLRVLDLSYNRIFRI 464
                 S    L  L L  N +               ++ L+VL L++N +  +
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTG--SMPKGLHTLNLSRNKINTI----EGLREMTRLRV 453
              +  +LR ++L ++ I  +          L  L L    ++         R +  L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 454 LDLSYNRIFRIGHGNILSK 472
           LDLS N+I  +       K
Sbjct: 128 LDLSKNQIRSLYLHPSFGK 146

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI-NTIEG--LREM 448
            L  +P     ++   + LS N+I  +   S P  + L  L L       TI+    R +
Sbjct: 15  NLTQVP--QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL 72

Query: 449 TRLRVLDLSYNRIFRI 464
             LR+LDL  ++I+ +
Sbjct: 73  PNLRILDLGSSKIYFL 88

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTG--SMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
                  +  ++L  N I  I        + L TL+L  N + TI  +     +  + LS
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI---PSIPDIFLS 389

Query: 458 YNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLS 495
            N++  +   N L+  +  LS    E L I+    R+ 
Sbjct: 390 GNKLVTLPKIN-LTANLIHLSENRLENLDILYFLLRVP 426

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNN 415
            L    E  L  ++    S ++ L        +    L ++P    SH ++LR ++L++N
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLY-------LNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 416 FIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
            +  +    +P  L  L++SRN++           L VLD+++N+ 
Sbjct: 515 RLTVLSHNDLPANLEILDISRNQLLAPN-PDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 397 AIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG---LREMTRLRV 453
           A+ TI    S+  + LS N +V +P  ++    + ++LS N++  ++    L  +  L++
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINL--TANLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 454 LDLSYNRIFRIGHGNILSKP 473
           L L+ NR          S+ 
Sbjct: 431 LILNQNRFSSCSGDQTPSEN 450

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIE-----GLREMTRL 451
              +  +L  ++LS N I  +           L +++ S N+I  +       L+    L
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ-GKTL 176

Query: 452 RVLDLSYNRIFRIGHGNILS 471
               L+ N ++     +   
Sbjct: 177 SFFSLAANSLYSRVSVDWGK 196

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 16/115 (13%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSM----PKGLHTLNLSRNKINTIE------- 443
           L   P+    +SL+S++ S+N I  +    +     K L   +L+ N + +         
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 444 -GLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCN 497
                   L +LD+S N       GN  +     +S      L +  +       
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNA----ISKSQAFSLILAHHIMGAGFG 248

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 22/121 (18%), Positives = 35/121 (28%), Gaps = 30/121 (24%)

Query: 363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPT 422
               LS   L ANS+               +             L  +++S N      T
Sbjct: 172 QGKTLSFFSLAANSLY----------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 423 GSMPKGLH--------------TLNLSRNKI-----NTIEGLREMTRLRVLDLSYNRIFR 463
           G+    +                     + I     NT  GL   + +R LDLS+  +F 
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS-VRHLDLSHGFVFS 280

Query: 464 I 464
           +
Sbjct: 281 L 281

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 22/67 (32%), Positives = 38/67 (56%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           LK I T++  ++L  ++L+NN I ++   S    L  L L  N+I+ I  L  +T L  L
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292

Query: 455 DLSYNRI 461
           +L+ N++
Sbjct: 293 ELNENQL 299

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
           G+K+I  + + ++L  +N SNN +  I    ++ K L  + ++ N+I  I  L  +T L 
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK-LVDILMNNNQIADITPLANLTNLT 115

Query: 453 VLDLSYNRI 461
            L L  N+I
Sbjct: 116 GLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  I  + + + L  + ++NN I  I   +    L  L L  N+I  I+ L+ +T L  L
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 139

Query: 455 DLSYNRI 461
           +LS N I
Sbjct: 140 ELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  ++  ++L S+  +NN I  I    +   L  L+L+ N++  I  L  +T L  L
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248

Query: 455 DLSYNRI 461
           DL+ N+I
Sbjct: 249 DLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 18/67 (26%), Positives = 35/67 (52%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  +   ++L  ++L+ N +  I T +    L  L+L+ N+I+ +  L  +T+L  L
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 270

Query: 455 DLSYNRI 461
            L  N+I
Sbjct: 271 KLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 17/67 (25%), Positives = 33/67 (49%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  ++  ++L ++ L+ N +  I   S  K L  L L  N I+ I  +  +T+L+ L
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336

Query: 455 DLSYNRI 461
               N++
Sbjct: 337 FFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 19/67 (28%), Positives = 30/67 (44%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L+ I  IS+  +L  + L  N I  I   S    L  L    NK++ +  L  +T +  L
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358

Query: 455 DLSYNRI 461
              +N+I
Sbjct: 359 SAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 21/100 (21%), Positives = 39/100 (39%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  +++ ++L  + L NN I  I        L+ L LS N I+ I  L  +T L+ L
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161

Query: 455 DLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRL 494
                        N+ +     +S      ++++     L
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 201

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           I T +  +      L    +    + +    + TL   R  I +I+G+  +  L  ++ S
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFS 76

Query: 458 YNRI 461
            N++
Sbjct: 77  NNQL 80

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 13/67 (19%), Positives = 31/67 (46%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  +S  + L+ +   NN +  + + +    ++ L+   N+I+ +  L  +TR+  L
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380

Query: 455 DLSYNRI 461
            L+    
Sbjct: 381 GLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +    + +    + ++      I  I        L  +N S N++  I  L+ +T+L  +
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 95

Query: 455 DLSYNRI 461
            ++ N+I
Sbjct: 96  LMNNNQI 102

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 7/53 (13%), Positives = 15/53 (28%)

Query: 412 LSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
             +  I  I T +         L +  +       ++ ++  L      I  I
Sbjct: 9   TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 8/85 (9%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  + ++++ +++  ++  +N I  +   +    +  L L+         +     + + 
Sbjct: 343 VSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAP-VNYKANVSIP 401

Query: 455 DLSYNR------IFRIGHGNILSKP 473
           +   N          I  G   ++P
Sbjct: 402 NTVKNVTGALIAPATISDGGSYTEP 426

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 6/70 (8%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI---EGLREMTRL 451
           +  +  +++ + +  + L++    + P  +    +   N  +N    +     + +    
Sbjct: 365 ISDLTPLANLTRITQLGLNDQAWTNAPV-NYKANVSIPNTVKNVTGALIAPATISDGGSY 423

Query: 452 RVLDLSYNRI 461
              D+++N  
Sbjct: 424 TEPDITWNLP 433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           + T++   ++  ++ S+N I  +      + L  L L  N +     L     L  +DLS
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRGPVNVE-LTILKLQHNNLTDTAWLLNYPGLVEVDLS 262

Query: 458 YNRI 461
           YN +
Sbjct: 263 YNEL 266

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRL 451
           L     + ++  L  V+LS N +  I        + L  L +S N++  +    + +  L
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 303

Query: 452 RVLDLSYNRIFRI 464
           +VLDLS+N +  +
Sbjct: 304 KVLDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLR 452
           +  +        L  + L +N +          GL  ++LS N++  I      +M RL 
Sbjct: 223 INVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 453 VLDLSYNRIFRI 464
            L +S NR+  +
Sbjct: 282 RLYISNNRLVAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
           L+ I   T    +SL+++ LS+N + H+    +P  L   N+S N ++T+        + 
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTLAIP---IAVE 214

Query: 453 VLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRL 494
            LD S+N I  +     +   +  L          + N   L
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 256

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LRE 447
           ++ I     ++  +++ + +  N I ++P     ++P  L  L L RN ++++       
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLSSLPRGIFHN 145

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
             +L  L +S N + RI   
Sbjct: 146 TPKLTTLSMSNNNLERIEDD 165

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREM 448
             +         ++ + V   N+ +  +P   +   + +  LNL+  +I  I+       
Sbjct: 39  QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98

Query: 449 TRLRVLDLSYNRI 461
             ++ L + +N I
Sbjct: 99  HTIQKLYMGFNAI 111

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLR 452
           L A+        +L+ ++LS+N ++H+         L  L L  N I T++ L     L+
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLK 348

Query: 453 VLDLSYNRI 461
            L LS+N  
Sbjct: 349 NLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTR 450
           L ++P     +   L ++++SNN +  I   +      L  L LS N++  ++ L  +  
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPS 193

Query: 451 LRVLDLSYNRI 461
           L   ++SYN +
Sbjct: 194 LFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI---EGLREMTR 450
           L  +      F  L ++ L +N IV +   +    L  L LS N  +        R + R
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH-TLKNLTLSHNDWDCNSLRALFRNVAR 371

Query: 451 LRVLDLSYN 459
             V D   +
Sbjct: 372 PAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 6/69 (8%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLD 455
           +     F  +     + +        ++      +    + +  +    L    ++ +L+
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 456 LSYNRIFRI 464
           L+  +I  I
Sbjct: 82  LNDLQIEEI 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIEGLREMT 449
           +  +        S ++ ++L  N I  +    +      L  LNL  N I  ++G     
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191

Query: 450 RLRVLDLSYNRIFRI 464
           +L+ LDLS N++  +
Sbjct: 192 KLKTLDLSSNKLAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLD 455
           +  +    S+ +++ +NN I  +       G   + L+ NKI  +        +R++ LD
Sbjct: 92  VQELLVGPSIETLHAANNNISRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 456 LSYNRIFRIGHGNILSK 472
           L  N I  +    + + 
Sbjct: 151 LKLNEIDTVNFAELAAS 167

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEGLREMTR 450
           LK           +++ ++LS N +  I    +     L  LNLS N +     L  ++ 
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLST 81

Query: 451 LRVLDLSYNRIFRIGHGNIL 470
           LR LDL+ N +  +  G  +
Sbjct: 82  LRTLDLNNNYVQELLVGPSI 101

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
           L  I    ++ F+ L  +NLS+N +           L TL+L+ N +  +        + 
Sbjct: 46  LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIE 102

Query: 453 VLDLSYNRIFRI 464
            L  + N I R+
Sbjct: 103 TLHAANNNISRV 114

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRVLDLSYN 459
            +   +L  +NL  NFI  +    +   L TL+LS NK+  +    +    +  + L  N
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

Query: 460 RI 461
           ++
Sbjct: 225 KL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT--GSMPKGLHTLNLSRNKINTI-EGLREMTRL 451
           +  +     F+ L++++LS+N +  +     S    +  ++L  NK+  I + LR    L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG-VTWISLRNNKLVLIEKALRFSQNL 239

Query: 452 RVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSAF 507
              DL  N        +  SK     +    + +  +       C +     + A+
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 397 AIPTIS-HFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL 451
           AI  I  + +  +   ++++ +             +  L+LS N ++ I    L   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 452 RVLDLSYNRIFRI 464
            +L+LS N ++  
Sbjct: 61  ELLNLSSNVLYET 73

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIF 462
             L  + +++  I  IP G +P  L  L+L  NKI  ++   L+ +  L  L LS+N I 
Sbjct: 171 KKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 463 RIGHG 467
            + +G
Sbjct: 230 AVDNG 234

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-EGLREMT 449
           +  +   ++   ++L  + LS N I  +  GS+     L  L+L+ NK+  +  GL +  
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263

Query: 450 RLRVLDLSYNRIFRIGHGNILSKPVF 475
            ++V+ L  N I  IG  +       
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYN 289

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREM 448
           GL+ +P  +        ++L NN I  I  G     K LHTL L  NKI+ I       +
Sbjct: 42  GLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99

Query: 449 TRLRVLDLSYNRIFRI 464
            +L  L LS N++  +
Sbjct: 100 VKLERLYLSKNQLKEL 115

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR 450
           +  IP      SL  ++L  N I  +   S+     L  L LS N I+ ++   L     
Sbjct: 183 ITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 451 LRVLDLSYNRIFRI 464
           LR L L+ N++ ++
Sbjct: 242 LRELHLNNNKLVKV 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFR 463
            LR V  S+  +  +P   +P     L+L  NKI  I     + +  L  L L  N+I +
Sbjct: 32  HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 464 IGHG 467
           I  G
Sbjct: 91  ISPG 94

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 25/85 (29%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGS-----------------------MPKGLHTLNLSRNK 438
            +  +L ++ L NN I  I  G+                       MPK L  L +  N+
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132

Query: 439 INTIEG--LREMTRLRVLDLSYNRI 461
           I  +       + ++ V++L  N +
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPL 157

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIEG------- 444
           + A+   ++++   LR ++L+NN +V +P G +  K +  + L  N I+ I         
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 445 -LREMTRLRVLDLSYNRI 461
              +      + L  N +
Sbjct: 288 YNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINT--IEG--LRE 447
           LK +P      +L+ + +  N I  +       + + +  + L  N + +  IE    + 
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQG 169

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           M +L  + ++   I  I  G
Sbjct: 170 MKKLSYIRIADTNITTIPQG 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--------KGLHTLNLSRNKINTIE-- 443
           L  +P  ++    ++ V L NN I  I +                 ++L  N +   E  
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 444 --GLREMTRLRVLDLSYNR 460
               R +     + L   +
Sbjct: 312 PSTFRCVYVRAAVQLGNYK 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLD 455
           +  +    S+ +++ +NN I  +       G   + L+ NKI  +        +R++ LD
Sbjct: 92  VQELLVGPSIETLHAANNNISRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 456 LSYNRIFRIGHGNILS 471
           L  N I  +    + +
Sbjct: 151 LKLNEIDTVNFAELAA 166

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIEGLREMT 449
           +  +        S ++ ++L  N I  +    +      L  LNL  N I  ++G     
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191

Query: 450 RLRVLDLSYNRIFRI 464
           +L+ LDLS N++  +
Sbjct: 192 KLKTLDLSSNKLAFM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRVLDLSYN 459
            +   +L  +NL  NFI  +    +   L TL+LS NK+  +    +    +  + L  N
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

Query: 460 RIFRI 464
           ++  I
Sbjct: 225 KLVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTR 450
           LK           +++ ++LS N +  I    +     L  LNLS N +     L  ++ 
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLST 81

Query: 451 LRVLDLSYNRIFRIGHGNIL 470
           LR LDL+ N +  +  G  +
Sbjct: 82  LRTLDLNNNYVQELLVGPSI 101

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
           L  I    ++ F+ L  +NLS+N +           L TL+L+ N +  +        + 
Sbjct: 46  LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIE 102

Query: 453 VLDLSYNRIFRI 464
            L  + N I R+
Sbjct: 103 TLHAANNNISRV 114

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT--GSMPKGLHTLNLSRNKINTI-EGLREMTRL 451
           +  +     F+ L++++LS+N +  +     S    +  ++L  NK+  I + LR    L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG-VTWISLRNNKLVLIEKALRFSQNL 239

Query: 452 RVLDLSYNRIFRIGHGNILSK 472
              DL  N        +  SK
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSK 260

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 397 AIPTIS-HFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL 451
           AI  I  + +  +   ++++ +             +  L+LS N ++ I    L   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 452 RVLDLSYNRIFRI 464
            +L+LS N ++  
Sbjct: 61  ELLNLSSNVLYET 73

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTI---EGLREMTRLRVL 454
           P     + +  ++L NN +V I       + L   +L  N  +     +   +  R++ +
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 455 DLSYNR 460
                +
Sbjct: 268 AKQTVK 273

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L+ +P + + S L+ +++ NN +  +P   +P  L  +    N++  +  L+ +  L  +
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEELPELQNLPFLTAI 200

Query: 455 DLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRL 494
               N + ++     LS         + E L  + N   L
Sbjct: 201 YADNNSLKKL-PDLPLSLESIVAGNNILEELPELQNLPFL 239

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L+ +P + +   L ++   NN +  +P   +P  L ++    N +  +  L+ +  L  +
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLP--DLPLSLESIVAGNNILEELPELQNLPFLTTI 242

Query: 455 DLSYNRI 461
               N +
Sbjct: 243 YADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L+ +P + +   L ++   NN +  +P    P  L  LN+  N +  +        L  L
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLP--ELPQSLTFL 282

Query: 455 DLSYNRI 461
           D+S N  
Sbjct: 283 DVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  +P      SL+S+ + NN +  +    +P  L  L +S N++  +  L+  + L+++
Sbjct: 103 LTELP--ELPQSLKSLLVDNNNLKALS--DLPPLLEYLGVSNNQLEKLPELQNSSFLKII 158

Query: 455 DLSYNRIFRI 464
           D+  N + ++
Sbjct: 159 DVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  +P      SL  +++S N    +    +P  L+ LN S N+I ++  L     L  L
Sbjct: 269 LTDLP--ELPQSLTFLDVSENIFSGLS--ELPPNLYYLNASSNEIRSLCDL--PPSLEEL 322

Query: 455 DLSYNRI 461
           ++S N++
Sbjct: 323 NVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           LK +P      SL S+   NN +  +P       L T+    N + T+        L  L
Sbjct: 207 LKKLP--DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEAL 262

Query: 455 DLSYNRI 461
           ++  N +
Sbjct: 263 NVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRVLDLSYNRI 461
               + L+N  +  +P   +P  L +L  S N +  + E  + +  L V + +   +
Sbjct: 72  QAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 21/84 (25%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL--------- 445
           L  +P  +    L  +  S N +  +P   +P+ L  L++  N +     +         
Sbjct: 329 LIELP--ALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 384

Query: 446 --------REMTRLRVLDLSYNRI 461
                        L+ L +  N +
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNPL 408

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFR 463
            L  + +S   +  IP   +P+ L+ L+L  NKI  IE   L   ++L  L L +N+I  
Sbjct: 173 KLNYLRISEAKLTGIPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 464 IGHG 467
           I +G
Sbjct: 232 IENG 235

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-EGLREMT 449
           ++AI    +  +S L  + L +N I  I  GS+     L  L+L  NK++ +  GL ++ 
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264

Query: 450 RLRVLDLSYNRIFRIGHGNILSKPVFWLSFKL 481
            L+V+ L  N I ++G  +             
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR 450
           L  IP      +L  ++L +N I  I    +     L+ L L  N+I  IE   L  +  
Sbjct: 184 LTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 451 LRVLDLSYNRIFRI 464
           LR L L  N++ R+
Sbjct: 243 LRELHLDNNKLSRV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREM 448
           GLKA+P  IS       ++L NN I  +        + L+ L L  NKI+ I       +
Sbjct: 44  GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101

Query: 449 TRLRVLDLSYNRIFRI 464
            +L+ L +S N +  I
Sbjct: 102 RKLQKLYISKNHLVEI 117

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFR 463
            LR V  S+  +  +P   +      L+L  N I+ +  +  + +  L  L L  N+I +
Sbjct: 34  HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 464 IGHG 467
           I   
Sbjct: 93  IHEK 96

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 25/89 (28%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGS-----------------------MPKGLHTLNLSRNK 438
                L ++ L NN I  I   +                       +P  L  L +  N+
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR 134

Query: 439 INTIEG--LREMTRLRVLDLSYNRIFRIG 465
           I  +       +  +  +++  N +   G
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIE-------- 443
           ++ I   ++S   +LR ++L NN +  +P G    K L  + L  N I  +         
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 444 GLREMTRLRVLDLSYNRI 461
              +      + L  N +
Sbjct: 289 FGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEGLREMT-- 449
           L  IP  +  SSL  + + +N I  +P G    +   ++ + +  N +    G       
Sbjct: 114 LVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPL-ENSGFEPGAFD 170

Query: 450 --RLRVLDLSYNRIFRIGHG 467
             +L  L +S  ++  I   
Sbjct: 171 GLKLNYLRISEAKLTGIPKD 190

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 13/79 (16%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--------KGLHTLNLSRNKINTIE-- 443
           L  +P  +     L+ V L  N I  +                 + ++L  N +   E  
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 444 --GLREMTRLRVLDLSYNR 460
               R +T    +     +
Sbjct: 313 PATFRCVTDRLAIQFGNYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG- 444
           ++    +K +P ++    L  + +S N    I  GS   +   L  L +  ++++ IE  
Sbjct: 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS-LKKLWVMNSQVSLIERN 260

Query: 445 -LREMTRLRVLDLSYNRI 461
               +  L  L+L++N +
Sbjct: 261 AFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTR 450
           L+ I         +L+ +NL    I  +P  +   GL  L +S N    I       ++ 
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 451 LRVLDLSYNRIFRIGHG 467
           L+ L +  +++  I   
Sbjct: 244 LKKLWVMNSQVSLIERN 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
            H   L  + L  N I  I  G+   +   L+TL L  N +  I       +++LR L L
Sbjct: 96  RHLHHLEVLQLGRNSIRQIEVGAFNGLAS-LNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 457 SYNRIFRIGHG 467
             N I  I   
Sbjct: 155 RNNPIESIPSY 165

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461
            +    V  +   +  +P G +P     LNL  N I  I+    R +  L VL L  N I
Sbjct: 53  SNQFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 462 FRI 464
            +I
Sbjct: 112 RQI 114

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 395 LKAIP--TISHFSSLRSVNLSN-NFIVHIPTGS---MPKGLHTLNLSRNKINTIEGLREM 448
           +++IP    +   SL  ++L     + +I  G+   +   L  LNL    I  +  L  +
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCNIKDMPNLTPL 217

Query: 449 TRLRVLDLSYNRIFRIGHG 467
             L  L++S N    I  G
Sbjct: 218 VGLEELEMSGNHFPEIRPG 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LRE 447
              I   +    SSL+ + + N+ +  I   +   +   L  LNL+ N ++++       
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS-LVELNLAHNNLSSLPHDLFTP 288

Query: 448 MTRLRVLDLSYN 459
           +  L  L L +N
Sbjct: 289 LRYLVELHLHHN 300

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM 425
              ++I+   + + +++S S    +  + ++ +   S+    + + L N      PT  +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFS----LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 426 PKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGN 468
              L  L  + NK        ++  L  LDLS N +   G  +
Sbjct: 325 KS-LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSM----PKGLHTLNLSRNKINTI-EGLREMT 449
                +     SL  ++LS N +      S        L  L+LS N + T+      + 
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 450 RLRVLDLSYNRIFRIGHGNILSKP 473
           +L  LD  ++ + ++   ++    
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSL 420

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG--SMPKGLHTLNLSRNKINTIEG--LREM 448
           ++ I        S L ++ L+ N I  +  G  S    L  L      + ++E   +  +
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 449 TRLRVLDLSYNRIFRIGHGNILSK 472
             L+ L++++N I         S 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSN 147

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT 449
               IP  +   S ++++LS N + H+ + S      L  L+LSR +I TIE    + ++
Sbjct: 18  NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 450 RLRVLDLSYNRI 461
            L  L L+ N I
Sbjct: 77  HLSTLILTGNPI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 389 HIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRNKINTI-- 442
            ++  G+  + +       L  ++  ++ +  +   S+   L     L++S         
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 443 EGLREMTRLRVLDLSYNRIFRIGHGNILSK 472
                ++ L VL ++ N        +I ++
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 395 LKAIPTISHF---SSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTI---EGLR 446
           LK +   S F    +L  +++S+        G       L  L ++ N        +   
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 447 EMTRLRVLDLSYNRIFRIGHG 467
           E+  L  LDLS  ++ ++   
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTI--EGLRE 447
           L+ +   +   F  L+ ++LS   I  I  G+   +   L TL L+ N I ++       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSG 98

Query: 448 MTRLRVLDLSYNRI 461
           ++ L+ L      +
Sbjct: 99  LSSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEG--LREMTRLRVLD 455
             +   +L  ++LS   +  +   +      L  LN++ N++ ++       +T L+ + 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 456 LSYNRI 461
           L  N  
Sbjct: 525 LHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 13/133 (9%)

Query: 352 PARSTAHLTRRSEINLSEEILHANSVIRSLNSSS------------AVAHIAGIGLKAIP 399
                  L       L          +   + S+             +A++       I 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459
             +  +++ S +L +  I  +   S   G   L L   K      L+ +  L+ L  + N
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSN 335

Query: 460 RIFRIGHGNILSK 472
           +         L  
Sbjct: 336 KGGNAFSEVDLPS 348

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIEG--LRE 447
            +       +  SSL  + ++ N         +      L  L+LS+ ++  +       
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 448 MTRLRVLDLSYNRIFRI 464
           ++ L+VL+++ N++  +
Sbjct: 493 LSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTG------SMPKGLHTLNLSRNKINTIE-GLRE 447
            K     S+ ++L  ++LS+N I  I          MP    +L+LS N +N I+ G  +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 448 MTRLRVLDLSYNRI 461
             RL  L L  N  
Sbjct: 199 EIRLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 409 SVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRIGH 466
           +          IP   +P     L+LS N +  +          L+VLDLS   I  I  
Sbjct: 11  TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 467 G 467
           G
Sbjct: 70  G 70

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
              S L S+NLS   +  +P G +P  L  L+LS N+++      E+ ++  L L  N  
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKG-LPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 398 IPTISHFSSLRSVNLSNNFIV------HIPTGSMPKGLHTLNLSRNKINTIEG-----LR 446
              +  F +L +++LS+N  +                L  L L    + T  G       
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 447 EMTRLRVLDLSYNRI 461
              +L+ LDLS+N +
Sbjct: 226 ARVQLQGLDLSHNSL 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 401 ISHFSSLRSVNLSNNFIVHIP---TGSMPKGLHTLNLSRNKINTI-EGLREMTRLRVLDL 456
            +    L+ ++LS+N +       +   P  L++LNLS   +  + +GL    +L VLDL
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDL 281

Query: 457 SYNRI 461
           SYNR+
Sbjct: 282 SYNRL 286

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457
           ++  +LR++ L +N +  IP G       L  L++S NKI  +     +++  L+ L++ 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 458 YNRIFRIGHG 467
            N +  I H 
Sbjct: 137 DNDLVYISHR 146

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LRE 447
           L A+P   + H   LR +NLS N I  I       + + L  + L   ++  +E    R 
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR-LQEIQLVGGQLAVVEPYAFRG 294

Query: 448 MTRLRVLDLSYNRI 461
           +  LRVL++S N++
Sbjct: 295 LNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LRE 447
           +  +         +L+S+ + +N +V+I   +   +   L  L L +  + +I    L  
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPTEALSH 174

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           +  L VL L +  I  I   
Sbjct: 175 LHGLIVLRLRHLNINAIRDY 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LRE 447
           LK IP    +  S+L  +++S N IV +       +   L +L +  N +  I       
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSG 150

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           +  L  L L    +  I   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457
           + F  L  + L+ N +  +  G+      L TL L  N++  I       ++ L  LD+S
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112

Query: 458 YNRIFRI 464
            N+I  +
Sbjct: 113 ENKIVIL 119

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LREMTRLRV 453
           P   +  +L S+++++  +  +P  +   +   L  LNLS N I+TIEG  L E+ RL+ 
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 454 LDLSYNRIFRI 464
           + L   ++  +
Sbjct: 277 IQLVGGQLAVV 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LREMTRLRVL 454
             S  +SL  + L    +  IPT +   +   L  L L    IN I     + + RL+VL
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 455 DLSYNRIFRIGHGNILS 471
           ++S+         N L 
Sbjct: 206 EISHWPYLDTMTPNCLY 222

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRI 461
            +  R+V       V +P G +P     L+L +N+I T+          L  L+L+ N +
Sbjct: 10  SAQDRAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 462 FRIGHG 467
             +  G
Sbjct: 69  SAVEPG 74

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMPKGLH--TLNLSRNKINTIE--GLREMTRLRVLDLS 457
                L+ + +S+   +   T +   GL+  +L+++   +  +    +R +  LR L+LS
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 458 YNRIFRIGHG 467
           YN I  I   
Sbjct: 257 YNPISTIEGS 266

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
                L+ + L    +  +       +   L  LN+S N++ T+E      +  L  L L
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNY-LRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

Query: 457 SYNRI 461
             N +
Sbjct: 328 DSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI--EGLREM 448
           L +IP   +SH   L  + L +  I  I   S      L  L +S               
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 449 TRLRVLDLSYNRIFRIGHG 467
             L  L +++  +  + + 
Sbjct: 224 LNLTSLSITHCNLTAVPYL 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LREMT 449
           L+ IP ++    L  ++LS N +  I  GS   +   L  L + +++I  IE      + 
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH-LQKLWMIQSQIQVIERNAFDNLQ 255

Query: 450 RLRVLDLSYNRIFRIGHG 467
            L  ++L++N +  + H 
Sbjct: 256 SLVEINLAHNNLTLLPHD 273

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT 449
            L+ +P     ++ R +NL  N I  I   S    + L  L LSRN I TIE      + 
Sbjct: 54  NLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112

Query: 450 RLRVLDLSYNRIFRIGHG 467
            L  L+L  NR+  I +G
Sbjct: 113 NLNTLELFDNRLTTIPNG 130

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS 457
            H   L  + LS N I  I  G+      L+TL L  N++ TI       +++L+ L L 
Sbjct: 85  KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144

Query: 458 YNRIFRI 464
            N I  I
Sbjct: 145 NNPIESI 151

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 29/102 (28%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG--------------------SMPKG---- 428
           L  IP     + S L+ + L NN I  IP+                      + +G    
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 429 ---LHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467
              L  LNL+   +  I  L  + +L  LDLS N +  I  G
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461
            +    V      +  +P G +      LNL  N+I  I+    + +  L +L LS N I
Sbjct: 42  SNQFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 462 FRIGHG 467
             I  G
Sbjct: 101 RTIEIG 106

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 393 IGLKAIPTISHFSSLRSVNLS-NNFIVHI-PTGSMPKGLHTLNLSRNKINTIEGLREMTR 450
                +  I+    + S++LS N  I  I P  ++P+ L +LN+  + ++   G+ +  +
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE-LKSLNIQFDGVHDYRGIEDFPK 182

Query: 451 LRVLDLSYNRI 461
           L  L      I
Sbjct: 183 LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 8/62 (12%), Positives = 22/62 (35%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459
           T +  +SL  + L+N  +  +        +  L ++         +  ++ L  L +   
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98

Query: 460 RI 461
            +
Sbjct: 99  DV 100

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 390 IAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI--NTIEGLRE 447
           +A I +  +  I +  +++ + ++N    +    S    L  L +    +  + I  L  
Sbjct: 51  LANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSG 110

Query: 448 MTRLRVLDLSYNRI 461
           +T L +LD+S++  
Sbjct: 111 LTSLTLLDISHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
           F +  +  L  +   +I    M   L  + L+   +  + G+     ++ L ++    
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNS-LTYITLANINVTDLTGIEYAHNIKDLTINNIHA 78

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 398 IPTISHFSSLRSVNLSNNFI--VHIPTGSMPKGLHTLNLSRNKIN--TIEGLREMTRLRV 453
              IS  S+L  + +    +    IP  S    L  L++S +  +   +  +  + ++  
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 454 LDLSYN 459
           +DLSYN
Sbjct: 141 IDLSYN 146

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
            +  +  I   + L  +  ++N I  +        L  L    NK+  ++ +  +T+L  
Sbjct: 53  SITDMTGIEKLTGLTKLICTSNNITTLDLSQNTN-LTYLACDSNKLTNLD-VTPLTKLTY 110

Query: 454 LDLSYNRI 461
           L+   N++
Sbjct: 111 LNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM 425
            + E  +  N+ +  L+           G+  +  +S    L  + L+N  +  +     
Sbjct: 287 KIKELDVTHNTQLYLLD-------CQAAGITELD-LSQNPKLVYLYLNNTELTELDVSHN 338

Query: 426 PKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
            K L +L+     I     + ++  L     +  +   +
Sbjct: 339 TK-LKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITM 376

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREM 448
                       ++  + L +++ S N I  +        L+ LN   N I  ++ L + 
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKL-LNRLNCDTNNITKLD-LNQN 211

Query: 449 TRLRVLDLSYNRI 461
            +L  LD S N++
Sbjct: 212 IQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  +  +S  ++L  +   +N + ++    + K L  LN   NK+  ++ + +   L  L
Sbjct: 76  ITTLD-LSQNTNLTYLACDSNKLTNLDVTPLTK-LTYLNCDTNKLTKLD-VSQNPLLTYL 132

Query: 455 DLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRL 494
           + + N +  I   +                   +    +L
Sbjct: 133 NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQL 172

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  I  +SH + L  ++   N  +     +    L TL+ S NKI  ++ + +   L  L
Sbjct: 139 LTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRL 196

Query: 455 DLSYNRIFRI 464
           +   N I ++
Sbjct: 197 NCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459
           +    ++L S++  N+ I  +       GL  L  + N I T++ L + T L  L    N
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN 95

Query: 460 RI 461
           ++
Sbjct: 96  KL 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 9/67 (13%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  +  ++    L  ++ S+N +  I    + + L   + S N +  ++ +  +++L  L
Sbjct: 203 ITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTYFDCSVNPLTELD-VSTLSKLTTL 259

Query: 455 DLSYNRI 461
                 +
Sbjct: 260 HCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  +  +S  S L +++     ++ I      + L        +      +   T+L +L
Sbjct: 245 LTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQ-LIYFQAEGCRKIKELDVTHNTQLYLL 302

Query: 455 DLSYNRI 461
           D     I
Sbjct: 303 DCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 9/136 (6%)

Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM 425
            L+E  +   S + +L+            L  I  ++H + L          +     + 
Sbjct: 244 PLTELDVSTLSKLTTLHCIQT-------DLLEID-LTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 426 PKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFL 485
              L+ L+     I  ++ L +  +L  L L+   +  +   +              +  
Sbjct: 296 NTQLYLLDCQAAGITELD-LSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDF 354

Query: 486 TIIPNCKRLSCNLYNS 501
           + +     L+ N    
Sbjct: 355 SSVGKIPALNNNFEAE 370

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
           F+S  +          I    +   L +L+   + I  + G+ ++T L  L  + N I
Sbjct: 20  FASEVAAAFEMQATDTISEEQLAT-LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI 76

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 363 SEINLSEEILHANSVIRSLNSSSAVAH--IAGIGLKAIPTISHFSSLRSVNLSNNFIVHI 420
            E  L+    + + +I   N  + V+   +  + ++ +   S+    + + L N      
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 421 PTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGN 468
           PT  + K L  L  + NK        ++  L  LDLS N +   G  +
Sbjct: 320 PTLKL-KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLD 455
             +   +L  ++LS   +  +   +      L  LN+S N   +++    + +  L+VLD
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 456 LSYNRI 461
            S N I
Sbjct: 525 YSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMT 449
               IP  +   S ++++LS N + H+ + S      L  L+LSR +I TIE    + ++
Sbjct: 18  NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 450 RLRVLDLSYNRI 461
            L  L L+ N I
Sbjct: 77  HLSTLILTGNPI 88

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 14/111 (12%)

Query: 394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LRE 447
            L+ +     +  SSL+ +N+S+N    + T        L  L+ S N I T +   L+ 
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 448 M-TRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCN 497
             + L  L+L+ N                     + +   ++   +R+ C 
Sbjct: 541 FPSSLAFLNLTQNDF----ACTC---EHQSFLQWIKDQRQLLVEVERMECA 584

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTI--EGLREMTRLRV 453
            +   F  L+ ++LS   I  I  G+   +   L TL L+ N I ++       ++ L+ 
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 454 LDLSYNRI 461
           L      +
Sbjct: 105 LVAVETNL 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGS------MPKGLHTLNLSRNKINTIE-GLR 446
             K     S+ ++L  ++LS+N I  I          MP    +L+LS N +N I+ G  
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 447 EMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLY 499
           +  RL  L L  N        N++            E   ++    R   NL 
Sbjct: 198 KEIRLHKLTLRNNFD----SLNVM--KTCIQGLAGLEVHRLVLGEFRNEGNLE 244

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIEG--LREMTRLRVL 454
                 S L ++ L+ N I  +  G+      L  L      + ++E   +  +  L+ L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 455 DLSYNRIFRIGHGNILSK 472
           ++++N I         S 
Sbjct: 130 NVAHNLIQSFKLPEYFSN 147

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRNKINTI--EGLREMTRLR 452
                    L  ++  ++ +  +   S+   L     L++S              ++ L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 453 VLDLSYNRIFRIGHGNILSK 472
           VL ++ N        +I ++
Sbjct: 449 VLKMAGNSFQENFLPDIFTE 468

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTI---EGLREMTRLRV 453
                 +L  +++S+        G    +   L  L ++ N        +   E+  L  
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 454 LDLSYNRIFRI 464
           LDLS  ++ ++
Sbjct: 475 LDLSQCQLEQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 10/140 (7%), Positives = 35/140 (25%), Gaps = 10/140 (7%)

Query: 364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIP-- 421
            +N+ +  +   + +               G       S    L ++ +    + ++   
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLG--EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 422 TGSMP------KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVF 475
              +         + + +L    I  ++        + L+L   +  +     + S    
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

Query: 476 WLSFKLFEFLTIIPNCKRLS 495
             +           +   L 
Sbjct: 331 TFTSNKGGNAFSEVDLPSLE 350

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 409 SVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRI 464
           +          IP   +P     L+LS N +  +          L+VLDLS   I  I
Sbjct: 11  TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPT----GSMPKGLHTLNLSRNKINTIE-----GLREMTR 450
            I H  +L+ +N+++N I          ++   L  L+LS NKI +I       L +M  
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 451 LRV-LDLSYNRIFRI 464
           L + LDLS N +  I
Sbjct: 178 LNLSLDLSLNPMNFI 192

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 8/84 (9%)

Query: 400 TISHFSSLR----SVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTI---EGLREMTRL 451
            +     +     S++LS N +  I  G+     LH L L  N  +       ++ +  L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 452 RVLDLSYNRIFRIGHGNILSKPVF 475
            V  L        G+     K   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSAL 251

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
           T   FS L+ ++L+   +  +P+G +    L  L LS NK   +          L  L +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 457 SYNRI 461
             N  
Sbjct: 333 KGNTK 337

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 387 VAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE- 443
             +   +GL  IP  +  +S   +  S N +  I   +      L  L+L+R +I  I  
Sbjct: 16  TYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 444 -GLREMTRLRVLDLSYNRI 461
              +   RL  L L+ N +
Sbjct: 75  DTFQSQHRLDTLVLTANPL 93

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTI--EGLREMTRLRVL 454
           T S   +L  ++L+   I  I   +     + L TL L+ N +  +    L     L+ L
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHL 110

Query: 455 DLSYNRIFRI 464
                 I  I
Sbjct: 111 FFIQTGISSI 120

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG---LRE 447
           L  +P  +   S+L+ + LS N   ++   S    P  L  L++  N      G   L  
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLEN 348

Query: 448 MTRLRVLDLSYNRIFRIGHGN 468
           +  LR LDLS++ I      N
Sbjct: 349 LENLRELDLSHDDIETSDCCN 369

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLD 455
            +S   +L+ +      I  I    +   K L +L L  N I++I+        +L+VLD
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 456 LSYNRIFRI 464
              N I  +
Sbjct: 160 FQNNAIHYL 168

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-----EGLREMTRLR 452
              +   L+ +NLS++ +             L  LNL  N            L+ + RL 
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 453 VLDLSYNRIFRIGHG 467
           +L LS+  +  I   
Sbjct: 480 ILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGS-----MPKGLHTLNLSRNKINTI--EGLREMTRLR 452
            + +  +LR ++LS++ I      +     +   L +LNLS N+  ++  E  +E  +L 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 453 VLDLSYNRIFRIGHGNILSKP 473
           +LDL++ R+      +     
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNL 424

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYN 459
                 ++ N  N  +  IP G++P     L  S N + TI       +  L  LDL+  
Sbjct: 9   IEKEVNKTYNCENLGLNEIP-GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 460 RIFRI 464
           +I+ I
Sbjct: 68  QIYWI 72

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI--EG 444
           H     ++   ++     L  + LS   +  I   +    K ++ ++LS N++ +   E 
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 445 LREMTRLRVLDLSYNRIFRI 464
           L  +  +  L+L+ N I  I
Sbjct: 520 LSHLKGI-YLNLASNHISII 538

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPK-GLHTLNLSRNKINTIEG--LREM 448
            L +I     +    +  V+LS+N +      ++       LNL+ N I+ I    L  +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPIL 546

Query: 449 TRLRVLDLSYNRI 461
           ++ R ++L  N +
Sbjct: 547 SQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRNKINTI--EGLREMTRLRVL 454
                  L  ++L+   +      S  + LH    LNLS + ++    +    +  L+ L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 455 DLSYNRI 461
           +L  N  
Sbjct: 455 NLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGSMPKGLH-----TLNLSRNKINTIE-GLREMTRLR 452
           P       L+ ++  NN I ++    M   L      +LNL+ N I  IE G  +    +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 453 VLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTI 487
            L+    +   +    + +  +  L    FE +  
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 6/69 (8%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMPKG----LHTLNLSRNKINTIEG--LREMTRLRVLD 455
           S   SL      +     I            + ++NL ++    I        + L+ LD
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 456 LSYNRIFRI 464
           L+   +  +
Sbjct: 285 LTATHLSEL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIE-----G 444
           + +I    + +  +L S+ L +N I  I         K L  L+   N I+ +       
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSS 175

Query: 445 LREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPN 490
           L++ T L  L+L+ N I  I  G   S     L+F   + L +I  
Sbjct: 176 LQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 398 IPTISHFSSLRSVNLSNNFIVHIP--TGSMPKGLHTLNLSRNKINTI---EGLREMTRLR 452
           +P       L S+NL+ N I  IP       + +  L+ + NK+  I      + ++ + 
Sbjct: 346 LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 453 VLDLSYNRIFRIGHGNILSKPVFWLSFK 480
            +D SYN I  +   N            
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPT----GSMPKGLHTLNLSRNKINT-IEGLREM 448
             +A+        ++ + +  N +   P       M K L  L    N++   +      
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEGKLPAFGSE 352

Query: 449 TRLRVLDLSYNRI 461
            +L  L+L+YN+I
Sbjct: 353 IKLASLNLAYNQI 365

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP---------KGLHTLNLSRNKINTIE---GLRE 447
             S  S L S+NL  N +  IP  S+            L +++L  NK+  +        
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 448 MTRLRVLDLSYNRI 461
           +  L  +DLSYN  
Sbjct: 512 LPYLVGIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIP--TGSMPKGLHTLNLSRNKINTI---------EGLRE 447
           PT     ++ S+NLSNN I   P    S    L ++NL  N +  I         E  + 
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 448 MTRLRVLDLSYNRI 461
              L  +DL +N++
Sbjct: 487 TYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 14/93 (15%)

Query: 395 LKAIPT---ISHFSSLRSVNLSNNFIVHIPTG---SMPKG------LHTLNLSRNKINTI 442
           LK IP        S + +++ S N I  +       +         + ++NLS N+I+  
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 443 --EGLREMTRLRVLDLSYNRIFRIGHGNILSKP 473
             E     + L  ++L  N +  I   ++  + 
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRL 451
           L+  P  I+   SL  + + +N I  +     P  +  L++  N   +I    +      
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN-ISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 452 RVLDLSYNRIFRIGHGNIL 470
            +  L Y++   I   + L
Sbjct: 614 GMYMLFYDKTQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTG----------SMPKGLHTLNLSRNKINTI- 442
           L  +P  +     ++ +N++ N  +                + + +  + +  N + T  
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 443 --EGLREMTRLRVLDLSYNRI 461
               L++M +L +L+  YN++
Sbjct: 322 VETSLQKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 11/79 (13%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 399 PTISHFSSLRSVNLS-NNFIVHIPT--GSMPKGLHTLNLSRNKINTIEGLRE-------- 447
               +   L  V +     +  +PT   ++P+ +  +N++ N+  + E L++        
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE-MQLINVACNRGISGEQLKDDWQALADA 301

Query: 448 --MTRLRVLDLSYNRIFRI 464
               +++++ + YN +   
Sbjct: 302 PVGEKIQIIYIGYNNLKTF 320

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 17/113 (15%)

Query: 401 ISHFSSLRSVNLSNNFIVHIP-TGSMPKGLH------TLNLSRNKINTI-EGLREMTRLR 452
           + +       +L  + I   P   S+ K          +    N I  + + +  +T+LR
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLR 209

Query: 453 VLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIP----NCKRLSC-NLYN 500
              +  +          + +     + +  +          N K L+   +YN
Sbjct: 210 QFYMGNSPF----VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/134 (9%), Positives = 41/134 (30%), Gaps = 30/134 (22%)

Query: 358 HLTRRSEINLSEEILHANSVIRS------LNSSSAVAHIAGIGLKAIP-TISHFSSLRSV 410
           +  R    +L ++ ++++   +S      +             +  +   +   + LR  
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQF 211

Query: 411 NLSNNFIVHIP---------------TGSMP------KGLHTLNLSRNKINTI--EGLRE 447
            + N+  V                    +        K L  + +      T     L+ 
Sbjct: 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 448 MTRLRVLDLSYNRI 461
           +  +++++++ NR 
Sbjct: 272 LPEMQLINVACNRG 285

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 403 HFSSLRSVNLSNNFIVHIPT---GSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN 459
             S ++ + L N+              + L  L+     + +I  L ++ +L+ L+LS N
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74

Query: 460 RIFRIGHGNILSKP---VFWLS---FKLFEFLTIIPNCKRL 494
           R+           P      LS    K    +  +   + L
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 12/118 (10%)

Query: 354 RSTAHLTRRSEINLSEEIL--HANSVIRSLNSSSAVAH-----IAGIGLKAIPTISHFSS 406
           R    L  R+  ++ E +L    ++  +    +             +GL +I  +   + 
Sbjct: 6   RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK 65

Query: 407 LRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI---NTIEGLREMTRLRVLDLSYN 459
           L+ + LS+N +             L  LNLS NKI   +TIE L+++  L+ LDL   
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 400 TISHFSSLRSVNLSNNFI------VHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRL 451
             +   +L+ ++LSN+F                  LH LNL++NKI+ I  +    +  L
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 452 RVLDLSYNRIFRIGHGNILSK 472
            VLDL  N I +   G     
Sbjct: 408 EVLDLGLNEIGQELTGQEWRG 428

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRNKINTIEG--LREMTRLRVL 454
             S    L  ++L  N I    TG   +GL     + LS NK   +       +  L+ L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 455 DLSYNRIFRIGHG 467
            L    +  +   
Sbjct: 460 MLRRVALKNVDSS 472

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTI--EGLREMTRLRV 453
              + +S L S+++  N I  +       +P  L  LNL  N+++ +  +     T L  
Sbjct: 43  ANFTRYSQLTSLDVGFNTISKLEPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNLTE 101

Query: 454 LDLSYNRIFRIGHGNI 469
           L L  N I +I +   
Sbjct: 102 LHLMSNSIQKIKNNPF 117

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMT 449
            L  +P     +++  +NL++N +  +P  +      L +L++  N I+ +E    +++ 
Sbjct: 15  KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP 73

Query: 450 RLRVLDLSYNRI 461
            L+VL+L +N +
Sbjct: 74  MLKVLNLQHNEL 85

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG----------LRE 447
                 +L  ++LSNN I +I    +   + L  L+L  N +  +            L+ 
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 448 MTRLRVLDLSYNRIFRI 464
           ++ L +L+L  N    I
Sbjct: 535 LSHLHILNLESNGFDEI 551

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE----GLREMTRLRV 453
                 +L +++LS+N +     G+    + L  L LS NKI  ++     +   + L+ 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 454 LDLSYNRIFRI 464
           L+LS N+I   
Sbjct: 176 LELSSNQIKEF 186

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 16/118 (13%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM----PKGLHTLNLSRNKINTI-- 442
            +     + +      +S+R+++LSN+ +      +        L  L+LS N +N +  
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 443 EGLREMTRLRVLDLSYNRIFRIGHGNI----------LSKPVFWLSFKLFEFLTIIPN 490
           +    + +L    L YN I  +   ++          L +     S  L     I   
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRI 461
           S    + S+  +  +P   +P  +  LNL+ N++  +        ++L  LD+ +N I
Sbjct: 5   SHEVADCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS 435
           +L  S     I+   L  I   +      L  +N+ +N I  I +        L  L+LS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 436 RNKINTIEGLRE------MTRLRVLDLSYNRIFRI 464
            +  +      E       + L +L+L+ N+I +I
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKG----------LHTLNLSRNKINTI--EGLRE 447
            +     L  ++L +N +  +   + P G          LH LNL  N  + I  E  ++
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 448 MTRLRVLDLSYNRIFRI 464
           +  L+++DL  N +  +
Sbjct: 559 LFELKIIDLGLNNLNTL 575

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP----KGLHTLNLSRNKINTI--EGLREMTRLRV 453
           + +   SL+ + L    + ++ +   P    + L  L+LS N I  I  + L  + +L +
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 454 LDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCN 497
           LDL +N + R+        P      K    L I+     L  N
Sbjct: 509 LDLQHNNLARLWKHANPGGP--IYFLKGLSHLHIL----NLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG---LR 446
           G   IP         L+ ++L  N +  +P         L +LNL +N I ++E      
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 447 EMTRLRVLDLSYNRI 461
               L  LD+ +N  
Sbjct: 607 AFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG-----LHTLNLSRNKI-----NTI 442
           +K            L  + L+N  +    T  +        +  L+LS +++      T 
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 443 EGLREMTRLRVLDLSYNRIFRI 464
            GL+  T L +LDLSYN +  +
Sbjct: 243 LGLK-WTNLTMLDLSYNNLNVV 263

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKIN----- 440
            I  +  + +  I   SSL+ + LS+N I     G    + + L  L L+  ++      
Sbjct: 156 KIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTE 213

Query: 441 TIEGLREMTRLRVLDLSYNRI 461
            +      T +R L LS +++
Sbjct: 214 KLCLELANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI------NTIEGL-----R 446
           + +    L    L  N I H+ + S+     +  LNL R+         ++  +     +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 447 EMTRLRVLDLSYNRIFRI 464
            +  L  L++  N I  I
Sbjct: 327 WLKCLEHLNMEDNDIPGI 344

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLR 452
           L +         L+ + +S N +  +P  S+   L  + +SRN++ ++       +T L+
Sbjct: 443 LDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 453 VLDLSYNRI 461
            + L  N  
Sbjct: 501 KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 358 HLTRRSEINLSEEILHANSVIRSLNSSS-AVAHIAGIGLKAIP--TISHFSSLRSVNLSN 414
             T     + +       S +  + + +    HI    L        S    ++ + + N
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 415 NFIVHIPTG--SMPKGLHTLNLSRNKINTIEG-----LREMTRLRVLDLSYNRIFRI 464
           + +  +P       K L  L+LS N +                L+ L LS N +  +
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKIN 440
            +S V         +IP+    ++++S++LS N I +I  G +     L  L L  ++IN
Sbjct: 5   DASGVCDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 441 TIEG--LREMTRLRVLDLSYNRI 461
           TIEG     +  L  LDLS N +
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTIS--HFSSLRSVNLSNNFIVHIPTG 423
            L   IL  + V     + + +          +  +      ++R +++   ++ +  + 
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 424 S---MPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGN 468
               + K +  + +  +K+  +     + +  L  LDLS N +      N
Sbjct: 305 VYSLLEK-VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIF 462
            +    +  +     IP+G +   + +L+LS NKI  I    LR    L+VL L  +RI 
Sbjct: 5   DASGVCDGRSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 463 RI 464
            I
Sbjct: 64  TI 65

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSY 458
            +      +R +NLS+  I  + T   P+ L  L++S N +++      + RL+ L +S 
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSFS--LFLPRLQELYISR 460

Query: 459 NRIFRIGHGNILSK 472
           N++  +   ++   
Sbjct: 461 NKLKTLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIP------TGSMPKGLHTLNLSRNKINTIEG-- 444
           +  +P     H  SL  ++LS N +V          G+ P  L TL LS+N + +++   
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQNHLRSMQKTG 380

Query: 445 --LREMTRLRVLDLSYNRI 461
             L  +  L  LD+S N  
Sbjct: 381 EILLTLKNLTSLDISRNTF 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI--EGLREM 448
           +  I    +   ++L+ + L ++ I  I   +      L  L+LS N ++++       +
Sbjct: 38  ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97

Query: 449 TRLRVLDLSYNRIFRIGHGNILSK 472
           + L+ L+L  N    +G  ++   
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPN 121

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           ++ + T     +L  +++SNN +           L  L +SRNK+ T+        L V+
Sbjct: 422 IRVVKT-CIPQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNKLKTLPDASLFPVLLVM 478

Query: 455 DLSYNRIFRI 464
            +S N++  +
Sbjct: 479 KISRNQLKSV 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSR-NKINTIEG--LR 446
           L ++        SSL+ +NL  N    +   S+      L TL +      + I      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 447 EMTRLRVLDLSYNRIFRIGHG 467
            +T L  L++    +      
Sbjct: 146 GLTSLNELEIKALSLRNYQSQ 166

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREM 448
              I     +  +SL  + +    + +  + S+   + +H L L  ++   +       +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 449 TRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEF 484
           + +R L+L    + R    + L         K   F
Sbjct: 196 SSVRYLELRDTNLARF-QFSPLPVDEVSSPMKKLAF 230

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 21/107 (19%)

Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS- 424
            L +  L  N+ +RS++ +               T      L +++L    +  +  G  
Sbjct: 81  LLEQLDLSDNAQLRSVDPA---------------TFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 425 --MPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRIGHG 467
             +   L  L L  N +  +  +  R++  L  L L  NRI  +   
Sbjct: 126 RGLAA-LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEG--LREM 448
           L+ +        ++L+ + L +N +  +P  +      L  L L  N+I+++     R +
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 449 TRLRVLDLSYNRIFRIGHG 467
             L  L L  NR+  +   
Sbjct: 177 HSLDRLLLHQNRVAHVHPH 195

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREM 448
           GL+A+P  I   ++ + + L  N I H+P  S    + L  L L  N +  I+      +
Sbjct: 22  GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 449 TRLRVLDLSYN 459
             L  LDLS N
Sbjct: 80  ALLEQLDLSDN 90

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LRE 447
           L+A+P  T     +L  + L  N I  +P  +   +   L  L L +N++  +     R+
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVAHVHPHAFRD 199

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           + RL  L L  N +  +   
Sbjct: 200 LGRLMTLYLFANNLSALPTE 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIF 462
               + +     +  +P G +P     + L  N+I+ +     R    L +L L  N + 
Sbjct: 11  EPKVTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 463 RIGHG 467
           RI   
Sbjct: 70  RIDAA 74

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHI 420
            +S     E +      +  L+       +  +GL ++  +     L+ + LS N I   
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLS-------LINVGLISVSNLPKLPKLKKLELSENRIFGG 86

Query: 421 PTGSMP--KGLHTLNLSRNKI---NTIEGLREMTRLRVLDLSYNRI 461
                     L  LNLS NK+   +T+E L+++  L+ LDL    +
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 401 ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL--REMTRLRVLDLSY 458
            + F +L  ++L N  ++ +        L  L LS N+I     +   ++  L  L+LS 
Sbjct: 45  TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 459 NRIFRIGHGNILSK 472
           N++  I     L K
Sbjct: 105 NKLKDISTLEPLKK 118

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 404 FSSLRSVNLSN--NFIVHIPT-GSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNR 460
            +++R + L N  +    I    +    L  L+L    + ++  L ++ +L+ L+LS NR
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82

Query: 461 IFRIGHGNILSKP---VFWLS---FKLFEFLTIIPNCKRLSC-NLYN 500
           IF          P      LS    K    L  +   + L   +L+N
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIEG--LREM 448
            L  +P  S  S    ++LS+N +  +     P     LH+L LS N +N I       +
Sbjct: 29  QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87

Query: 449 TRLRVLDLSYNRIFRIGHG 467
             LR LDLS N +  +   
Sbjct: 88  PNLRYLDLSSNHLHTLDEF 106

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
           +  ++L S+ LS+N +  I + +   +P  L  L+LS N ++T++     ++  L VL L
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119

Query: 457 SYNRIFRIGHG 467
             N I  +   
Sbjct: 120 YNNHIVVVDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 17/111 (15%)

Query: 372 LHANSVIRSLNSSSAVA--------HIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIP 421
           L  N+ +  L +              ++   L  I         +LR ++LS+N +  + 
Sbjct: 46  LSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104

Query: 422 TG---SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG 467
                 +   L  L L  N I  ++     +M +L+ L LS N+I R    
Sbjct: 105 EFLFSDLQA-LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 19/100 (19%)

Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM 425
           +L    +  NS   +                     +   +L  ++LS   +  +   + 
Sbjct: 151 SLEVLKMAGNSFQENFLPD---------------IFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 426 P--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461
                L  LN+S N   +++    + +  L+VLD S N I
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIE----GLRE 447
           GL ++PT    SS   + L +N +  +P G   K   L  L+LS N ++           
Sbjct: 18  GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 448 MTRLRVLDLSYNRIFRI 464
            T L+ LDLS+N +  +
Sbjct: 77  TTSLKYLDLSFNGVITM 93

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMP----KGLHTLNLSRNKINTI-EGLREMTRLRVLDL 456
              + L  ++LS+N +      S        L  L+LS N + T+      + +L  LD 
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108

Query: 457 SYNRIFRIGHGNILSK 472
            ++ + ++   ++   
Sbjct: 109 QHSNLKQMSEFSVFLS 124

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFR 463
           S   +  ++  +  +PTG +P     L L  NK+ ++      ++T+L  L LS N +  
Sbjct: 8   SGTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 464 IG 465
            G
Sbjct: 67  KG 68

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 395 LKAIPTISHFS---SLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKINTI---EGL 445
           LK +   S F    +L  +++S+        G    +   L  L ++ N        +  
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIF 171

Query: 446 REMTRLRVLDLSYNRIFRIGHG 467
            E+  L  LDLS  ++ ++   
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPT 193

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIEG--LREM 448
           +  +         L  ++  ++ +  +   S+      L  L++S              +
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 449 TRLRVLDLSYNRIFRIGHGNILSK 472
           + L VL ++ N        +I ++
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTE 173

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 395 LKAIP--TISHFSSLRSVNLS-NNFIVHIPTGSMPK--GLHTLNLSRNKINTIEG--LRE 447
            +       +  SSL  + ++ N+F  +       +   L  L+LS+ ++  +       
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 448 MTRLRVLDLSYNRIFRI 464
           ++ L+VL++S+N  F +
Sbjct: 198 LSSLQVLNMSHNNFFSL 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 394 GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG---LR 446
            L+ +     +  SSL+ +N+S+N    + T        L  L+ S N I T +      
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 447 EMTRLRVLDLSYNRI 461
             + L  L+L+ N  
Sbjct: 246 FPSSLAFLNLTQNDF 260

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKIN 440
             + +   +   L +IP+     +++S++LSNN I +I    + +   L  L L+ N IN
Sbjct: 31  DRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89

Query: 441 TIEG--LREMTRLRVLDLSYNRIFRIGHG 467
           TIE      +  L  LDLSYN +  +   
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
               +L+++ L++N I  I      S+   L  L+LS N ++ +     + ++ L  L+L
Sbjct: 73  QRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131

Query: 457 SYNRIFRIGHGNILSKPV--FWLSFKLFEFLTIIP 489
             N    +G  ++ S       L     +  T I 
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 357 AHLTRRSEINLSE---EILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVN 411
             L+  + +NL     + L   S+   L     +          I     +  + L  + 
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 412 LSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHG 467
           +  + +      S+     +  L L   +   +    +   + +  L+L    +    H 
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF-HF 239

Query: 468 NILSKPVFWLSFKLFEF 484
           + LS        K F F
Sbjct: 240 SELSTGETNSLIKKFTF 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 395 LKAIPTI--SHFSSLRSVNLSNNFIVHIPTGSMPKG----------LHTLNLSRNKINTI 442
              +  I     SS+  + L +  +       +  G             + ++   +  +
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269

Query: 443 EGL-REMTRLRVLDLSYNRIFRIGHG 467
             L  +++ L  L+ S N++  +  G
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN----LSRNKINTIEG--LR 446
           L  +        SSL  +NL  N    +   S+   L  L      + +    I+     
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 447 EMTRLRVLDLSYNRIFRIGHG 467
            +T L  L++  + +      
Sbjct: 172 GLTFLEELEIDASDLQSYEPK 192

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 8/87 (9%), Positives = 28/87 (32%), Gaps = 14/87 (16%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIE------- 443
           L++    ++    ++  + L     + +    +     +  L L    ++T         
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 444 ---GLREMTRLRVLDLSYNRIFRIGHG 467
               L +    R + ++   +F++   
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKL 272

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRV 453
           L ++P     S L+ + +S N +  +P    P GL +L++ RN++  + E L  ++    
Sbjct: 233 LTSLP--VLPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETT 288

Query: 454 LDLSYNRI 461
           ++L  N +
Sbjct: 289 VNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 381 LNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKIN 440
           LN+ +AV ++   GL  +P     + + ++ + +N +  +P    P  L TL +S N++ 
Sbjct: 38  LNNGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT 94

Query: 441 TI-EGLREMTRLRVLDLSYNRI 461
           ++      +  L +       +
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM 425
            LS         + +L S      I G  L ++P       L+ +++S+N +  +P  ++
Sbjct: 105 ELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLASLP--AL 159

Query: 426 PKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
           P  L  L    N++ ++      + L+ L +S N++
Sbjct: 160 PSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQL 193

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L ++P  +  S L+ + +S N +  +P   +P  L  L +S N++ ++      + L  L
Sbjct: 213 LTSLP--ALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLP--MLPSGLLSL 266

Query: 455 DLSYNRI 461
            +  N++
Sbjct: 267 SVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L ++P     S L+ +++S+N +  +PT   P  L+ L    N++ ++  L   + L+ L
Sbjct: 173 LTSLP--MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKEL 226

Query: 455 DLSYNRI 461
            +S NR+
Sbjct: 227 IVSGNRL 233

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 22/91 (24%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTG------------------SMPKGLH 430
            I    L ++P  +    LR++ +S N +  +P                    ++P GL 
Sbjct: 67  VIPDNNLTSLP--ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

Query: 431 TLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
            L +  N++ ++        L+ L +S N++
Sbjct: 125 KLWIFGNQLTSLP--VLPPGLQELSVSDNQL 153

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 395 LKAIPTISHFS---SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTR 450
           +         S   SL S+N+S+N +       +P  +  L+L  NKI +I + + ++  
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEA 445

Query: 451 LRVLDLSYNRIFRIGHG 467
           L+ L+++ N++  +  G
Sbjct: 446 LQELNVASNQLKSVPDG 462

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEGL- 445
            ++G  +  +   S  S    ++ SNN +      +      L TL L  N++  +  + 
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367

Query: 446 ---REMTRLRVLDLSYNRIFRIGHGNILSKPV 474
               +M  L+ LD+S N +         S   
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 26/110 (23%)

Query: 409 SVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGH 466
            V+ S N ++H+P   + +    LN+S+N I+ +    +  +++LR+L +S+NRI  +  
Sbjct: 4   LVDRSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 467 G---------------NILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNS 501
                           N L K    +S      L  +     LS N +++
Sbjct: 63  SVFKFNQELEYLDLSHNKLVK----ISCHPTVNLKHL----DLSFNAFDA 104

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLRE---MT 449
           ++ +          L  ++LS+N +V I        L  L+LS N  + +   +E   M+
Sbjct: 57  IQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN-LKHLDLSFNAFDALPICKEFGNMS 115

Query: 450 RLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSAF 507
           +L+ L LS   + +     I    +  +   L E      + + L  +      H  F
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVF 172

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 401 ISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           I   S LR + +S+N I ++         + L  L+LS NK+  I        L+ LDLS
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVFKFNQE-LEYLDLSHNKLVKIS-CHPTVNLKHLDLS 98

Query: 458 YNRIFRIGHGNILSK 472
           +N    +        
Sbjct: 99  FNAFDALPICKEFGN 113

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 398 IP-TISHFSSLRSVNLSNNFIV-HIPT--GSMPKGLHTLNLSRNKIN-TI-EGLREMTRL 451
           IP  I     L  +NL +N I   IP   G + +GL+ L+LS NK++  I + +  +T L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RGLNILDLSSNKLDGRIPQAMSALTML 706

Query: 452 RVLDLSYNR 460
             +DLS N 
Sbjct: 707 TEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)

Query: 397 AIPTISHFSSLRSVNLS-NNFIVHIPT----GSMPKGLHTLNLSRNKIN---TIEGLREM 448
           ++      +SL S++LS N+    + T    GS    L  LN+S N ++    + G  ++
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG-LKFLNVSSNTLDFPGKVSGGLKL 150

Query: 449 TRLRVLDLSYNRI 461
             L VLDLS N I
Sbjct: 151 NSLEVLDLSANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 373 HANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLS-NNFIVHIPTGSMPKGLHT 431
             + V  S++ SS    +         ++   + L S+ LS ++    +        L +
Sbjct: 48  RDDKVT-SIDLSSK--PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 432 LNLSRN----KINTIEGLREMTRLRVLDLSYNRI 461
           L+LSRN     + T+  L   + L+ L++S N +
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 398 IPTISHFSSLRSVNLS-NNFIVHIPT-GSMPKGLHTLNLSRNKIN-TI-EGLREMTRLRV 453
           +  +S   +L  +++S NNF   IP  G     L  L++S NK++      +   T L++
Sbjct: 194 VD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 454 LDLSYNRIFRIGHGNILSKPVFWLS 478
           L++S N+      G I   P   L 
Sbjct: 252 LNISSNQF----VGPI---PPLPLK 269

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 398 IPTISHFSSLRSVNLSNNFIV-HIPT--GSMPKGLHTLNLSRNKIN-TIEGLREMTRLRV 453
           IP +   S+L+ +++S N +         +  + L  LN+S N+    I  L  +  L+ 
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFVGPIPPLP-LKSLQY 273

Query: 454 LDLSYNRI 461
           L L+ N+ 
Sbjct: 274 LSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 17/81 (20%)

Query: 398 IP-TISHFSSLRSVNLSNNFIVHIPTGSMP------KGLHTLNLSRNKIN-TI-EGLREM 448
           IP  + +  +L ++ L  N +    TG +P        L+ ++LS N++   I + +  +
Sbjct: 458 IPQELMYVKTLETLILDFNDL----TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 449 TRLRVLDLSYNRIFRIGHGNI 469
             L +L LS N       GNI
Sbjct: 514 ENLAILKLSNNSF----SGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGSMP------KGLHTLNLSRNKIN-TI-EGLREMTR 450
           PT+S+ S L S++LS N++    +G++P        L  L L  N +   I + L  +  
Sbjct: 412 PTLSNCSELVSLHLSFNYL----SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 451 LRVLDLSYNRI 461
           L  L L +N +
Sbjct: 468 LETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 398 IPT--ISHFSSLRSVNLSNNFIV-HIPT--GSMPKGLHTLNLSRNKIN-TI--EGLREMT 449
           IP        +L  ++LS N     +P   GS    L +L LS N  +  +  + L +M 
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL-LESLALSSNNFSGELPMDTLLKMR 343

Query: 450 RLRVLDLSYNRIFRIGHGNI 469
            L+VLDLS+N       G +
Sbjct: 344 GLKVLDLSFNEF----SGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 399 PTISHFSSLRSVNLSNNFIV-HIPT--GSMPKGLHTLNLSRNKIN-TI-EGLREMTRLRV 453
            ++   S LR + L  N +   IP     +   L TL L  N +   I  GL   T L  
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 454 LDLSYNRI 461
           + LS NR+
Sbjct: 495 ISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 13/81 (16%)

Query: 398 IP--TISHFSSLRSVNLSNNFIV-HIPT--GSMPKGLHTLNLSRNKIN-TIE---GLREM 448
           +P  T+     L+ ++LS N     +P    ++   L TL+LS N  +  I         
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 449 TRLRVLDLSYNRIFRIGHGNI 469
             L+ L L  N       G I
Sbjct: 394 NTLQELYLQNNGF----TGKI 410

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 398 IP-TISHFSSLRSVNLSNNFIV-HIPTGSMPKGLHTLNLSRNKIN-TI-EGLREMTRLRV 453
                    + + ++L+ N +   +    + K L+ L+L  N+I  T+ +GL ++  L  
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 454 LDLSYNR 460
           L++S+N 
Sbjct: 273 LNVSFNN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 12/71 (16%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGSMP------KGLHTLNLSRNKIN-TI-EGLREMTR 450
           P I+  + L  + +++  +    +G++P      K L TL+ S N ++ T+   +  +  
Sbjct: 95  PAIAKLTQLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 451 LRVLDLSYNRI 461
           L  +    NRI
Sbjct: 151 LVGITFDGNRI 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 399 PTISHFSSLRSVNLS--NNFIVHIPT--GSMPKGLHTLNLSRNKIN-TI-EGLREMTRLR 452
            ++++   L  + +   NN +  IP     + + LH L ++   ++  I + L ++  L 
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLV 128

Query: 453 VLDLSYNRIFRIGHGNI 469
            LD SYN +     G +
Sbjct: 129 TLDFSYNAL----SGTL 141

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 398 IPT-ISHFSSLRSVNLSNNFIV-HIPT--GSMPKGLHTLNLSRNKIN-----TIEGLREM 448
           +P  IS   +L  +    N I   IP   GS  K   ++ +SRN++      T   L   
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-- 198

Query: 449 TRLRVLDLSYNRI 461
             L  +DLS N +
Sbjct: 199 --LAFVDLSRNML 209

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 395 LKAIPTISHFSSLRSVNLS-NNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT 449
           L ++  +    +L  + +     + H+    +     L  L + ++ +  +         
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 450 RLRVLDLSYNRIFRIGHGNILSKPVFWL 477
           RL  L+LS+N +  +    +    +  L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQEL 108

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 33/156 (21%)

Query: 339 GVIFPPSPETGKSPARSTAHLTRRSEINLSE------------EILHANSVIRSLN---- 382
           G +    PE  +   ++     +   + LS+            + L  ++ +  L     
Sbjct: 73  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 383 --SSSAVAHIAG--IGLKAIPTISHFSSLRSVNLSNNFI-----VHIPTG-SMPKGLHTL 432
                A A IA     L       +   LRS+    N +               + LHT+
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 433 NLSRNKINTI-------EGLREMTRLRVLDLSYNRI 461
            + +N I          EGL     L+VLDL  N  
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 21/111 (18%)

Query: 370 EILHANSVIRSLNSSSAVAHIAGIGLKAI-PTISHFSSLRSVNLSNNFI----VHIPTGS 424
            +L  +  ++ +  S     I     + +   I+    L     S+ F       IP   
Sbjct: 26  AVLLEDDSVKEIVLSGN--TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 425 MP--------KGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRI 461
                       LHT+ LS N           + L + T L  L L  N +
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 370 EILHANSVIRSLN-SSSAVAHIAGIGLKAI-PTISHFSSLRSVNLSNNFI---------- 417
           + L     + ++  S +A         + +   +S  + L  + L NN +          
Sbjct: 88  QALLKCPKLHTVRLSDNA---FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 418 -----VHIPTGSMPKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIFRIGH 466
                           L ++   RN++         +  +    L  + +  N I   G 
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 467 GNILSK 472
            ++L +
Sbjct: 205 EHLLLE 210

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 20/109 (18%)

Query: 370 EILHANSVIRSLNSSSAVAHIAGIGLKAI-PTISHFSSLRSVNLSNNFI-----VHIPTG 423
           E L     ++ L+          +G  A+   +  + +LR + L++  +       +   
Sbjct: 210 EGLAYCQELKVLDLQDN--TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 424 ---SMPKGLHTLNLSRNKINTIEGLRE--------MTRLRVLDLSYNRI 461
                  GL TL L  N+I  ++ +R         M  L  L+L+ NR 
Sbjct: 268 FSKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 18/108 (16%)

Query: 370 EILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI-----VHIPTGS 424
           +   ++ ++ ++          GI    +  +++   L+ ++L +N         +    
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL--AI 238

Query: 425 MPKG---LHTLNLSRNKINTI------EGLREM--TRLRVLDLSYNRI 461
             K    L  L L+   ++        +   ++    L+ L L YN I
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 405 SSLRSVNLSNNFIVHIPTG--SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR 460
           S +++ +LS + I  +     S    L  L L++N+IN I+      +T L  L+LS N 
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 461 IFRIGHG 467
           +  I   
Sbjct: 335 LGSIDSR 341

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
           SHF+ L  + L+ N I  I       +   L  LNLS+N + +I+      + +L VLDL
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354

Query: 457 SYNRIFRIGHG 467
           SYN I  +G  
Sbjct: 355 SYNHIRALGDQ 365

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEG--LREM 448
           +  I        + L  +NLS NF+  I +        L  L+LS N I  +       +
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 449 TRLRVLDLSYNRIFRIGHG 467
             L+ L L  N++  +  G
Sbjct: 371 PNLKELALDTNQLKSVPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 27/95 (28%)

Query: 394 GLKAIPTI----------------------SHFSSLRSVNLSNNFI-VHIPTGSMPK--G 428
           GL  +P +                      S    L+ + +      + I   +      
Sbjct: 21  GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 429 LHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461
           L  L L  N+   +E      +  L VL L+   +
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTI---EGL-REMTRLRV 453
           T    SSL  + L  N  + + TG+      L  L L++  ++         + +T L +
Sbjct: 74  TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 454 LDLSYNRIFRIGHGNILSK 472
           L L  N I +I   +    
Sbjct: 134 LVLRDNNIKKIQPASFFLN 152

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 408 RSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRI 464
            +    N  +  +P   +P  ++ ++LS N I  +       +  L+ L +       +
Sbjct: 13  YNAICINRGLHQVP--ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
             ++      +    + L+   +  +P  ++P  +  L +++N + ++        L  L
Sbjct: 49  AVSLLKECLINQFSELQLNRLNLSSLPD-NLPPQITVLEITQNALISL--PELPASLEYL 105

Query: 455 DLSYNRI 461
           D   NR+
Sbjct: 106 DACDNRL 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTG-----SMPKGLHTLNLSRNKINTI-EGLREM 448
           L  +P      SL ++++S N +  +P          +         N+I  I E +  +
Sbjct: 172 LTFLP--ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 449 TRLRVLDLSYNRI 461
                + L  N +
Sbjct: 230 DPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           L  +P     +SL+ +++ NN +  +P   +P  L  +N   N++  +      T L VL
Sbjct: 112 LSTLP--ELPASLKHLDVDNNQLTMLP--ELPALLEYINADNNQLTML--PELPTSLEVL 165

Query: 455 DLSYNRI 461
            +  N++
Sbjct: 166 SVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLR- 452
           L  +P     +SL  +++ NN +  +P   +P+ L  L++S N + ++            
Sbjct: 152 LTMLP--ELPTSLEVLSVRNNQLTFLP--ELPESLEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 453 ---VLDLSYNRI 461
                    NRI
Sbjct: 208 TEIFFRCRENRI 219

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 13/68 (19%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
            L ++P  +    +  + ++ N ++ +P   +P  L  L+   N+++T+        L+ 
Sbjct: 70  NLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTL--PELPASLKH 124

Query: 454 LDLSYNRI 461
           LD+  N++
Sbjct: 125 LDVDNNQL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 371 ILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLH 430
           I+   +   SL+ +S    I+G           +        + N  V +    +     
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 431 TLNLSRNKINTI-EGLREMTRLRVLDLSYNRI 461
            L L+R  ++++ + L    ++ VL+++ N +
Sbjct: 63  ELQLNRLNLSSLPDNLP--PQITVLEITQNAL 92

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTG--SMPKGLHTLNLSRNKINTIEG--LREMTR 450
           L  +        L +++LS+N +  +P    ++P  L  L++S N++ ++    LR +  
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA-LTVLDVSFNRLTSLPLGALRGLGE 125

Query: 451 LRVLDLSYNRIFRIGHG 467
           L+ L L  N +  +  G
Sbjct: 126 LQELYLKGNELKTLPPG 142

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEGLREMTR 450
            L A+P  +        ++LS N +      ++     L  LNL R ++  ++    +  
Sbjct: 21  NLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV 78

Query: 451 LRVLDLSYNRI 461
           L  LDLS+N++
Sbjct: 79  LGTLDLSHNQL 89

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL-REMTRLRVLDLSYNR 460
             ++ L  +NL    +  +        L TL+LS N++ ++  L + +  L VLD+S+NR
Sbjct: 52  MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111

Query: 461 I 461
           +
Sbjct: 112 L 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 352 PARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSV 410
              +    TR +++NL    L    V  +L     +  ++   L+++P       +L  +
Sbjct: 47  SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL-DLSHNQLQSLPLLGQTLPALTVL 105

Query: 411 NLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTI-EGL-REMTRLRVLDLSYNRIFRIG 465
           ++S N +  +P G    + + L  L L  N++ T+  GL     +L  L L+ N +  + 
Sbjct: 106 DVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164

Query: 466 HG 467
            G
Sbjct: 165 AG 166

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIF 462
           +S   VN     +  +P   +PK    L+LS N + T     L   TRL  L+L    + 
Sbjct: 10  ASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 463 RIGHGNILSK 472
           ++     L  
Sbjct: 69  KLQVDGTLPV 78

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTI-EGL-RE 447
           L ++P   +     L+ + L  N +  +P G     PK L  L+L+ N +  +  GL   
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTELPAGLLNG 170

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           +  L  L L  N ++ I  G
Sbjct: 171 LENLDTLLLQENSLYTIPKG 190

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 8/78 (10%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVH-----IPTGSMPKGLHTLNLSRNKINT------IE 443
            + + +   F +L+ + + +    +          +   L T+++S   +        ++
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301

Query: 444 GLREMTRLRVLDLSYNRI 461
            + ++  L+ +++ YN +
Sbjct: 302 HVDKIKHLKFINMKYNYL 319

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFR 463
           S R      + +  IP+  +P+    L     K+  I+         L  +++S N +  
Sbjct: 10  SNRVFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 464 I 464
           +
Sbjct: 69  V 69

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 12/83 (14%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG--LHTLNLSRN-KINTIE-----G 444
           L  I      +  +L+ + +SN  I H+P            L++  N  I+TIE     G
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 445 LREMTRLRVLDLSYNRIFRIGHG 467
           L       +L L+ N I  I + 
Sbjct: 152 L--SFESVILWLNKNGIQEIHNS 172

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 32/108 (29%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNL---SNNFIVHIPTGS---MPKGLHTLNLSRNKINTI 442
            I+  G+K +P +    SL+ V L    N  I  I   S   +      L L++N I  I
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169

Query: 443 EG--------------------------LREMTRLRVLDLSYNRIFRI 464
                                           +   +LD+S  RI  +
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLN-LSRNKINTIEGLREMTRL 451
           L+ +P       S    +++S   I  +P+    + L  L   S   +  +  L ++  L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKLPTLEKLVAL 248

Query: 452 RVLDLSYNR 460
               L+Y  
Sbjct: 249 MEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS---MPKGLHTLNLSRNKI-NTIEG--L 445
              +  IP+     +   +      +  I  G+       L  + +S+N +   IE    
Sbjct: 18  ESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVF 75

Query: 446 REMTRLRVLDLS-YNRIFRIGHG 467
             + +L  + +   N +  I   
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPE 98

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 25/118 (21%)

Query: 367 LSEEILHANSVIRSLN------SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI--- 417
           L + +    + + SLN      +S   A +A   L +IP      S+ S++LS N +   
Sbjct: 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAK-FLASIPA-----SVTSLDLSANLLGLK 211

Query: 418 --VHIPTG--SMPKGLHTLNLSRNKINT------IEGLREMTRLRVLDLSYNRIFRIG 465
               +     S+P  + +LNL  N ++             +  L+ + L Y+ +  + 
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 26/112 (23%)

Query: 370 EILHANSVIRSLN------SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI-----V 418
           E       + SL+       S +   +        P      S+ S+NLS N +      
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQ-AFANTPA-----SVTSLNLSGNSLGFKNSD 69

Query: 419 HIPTG--SMPKGLHTLNLSRNKINTI------EGLREM-TRLRVLDLSYNRI 461
            +     ++P  + +LNLS N ++        + L  +   + VLDL +N  
Sbjct: 70  ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 26/115 (22%)

Query: 367 LSEEILHANSVIRSLN------SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI--- 417
           L + +    + + SLN      S  +   +    L AIP      ++  ++L  N     
Sbjct: 71  LVQILAAIPANVTSLNLSGNFLSYKSSDELVK-TLAAIPF-----TITVLDLGWNDFSSK 124

Query: 418 --VHIPTG--SMPKGLHTLNLSRNKINTI------EGLREM-TRLRVLDLSYNRI 461
                     ++P  + +LNL  N +         + L  +   +  L+L  N +
Sbjct: 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 27/116 (23%)

Query: 367 LSEEILHANSVIRSLN------SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI--- 417
           L++ +    + + SL+         + A +A     +IP     + + S+NL  N +   
Sbjct: 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIP-----NHVVSLNLCLNCLHGP 240

Query: 418 --VHIPTGSMP-KGLHTLNLSRNKINTI---------EGLREMTRLRVLDLSYNRI 461
              ++       K L T+ L  + +  +              + ++ ++D +   I
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPT--GSMPKGLHTLNLSRNKINTI-EGLREMTR 450
           L   P      S L+ + +    ++ +P         L TL L+RN +  +   +  + R
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG-LETLTLARNPLRALPASIASLNR 151

Query: 451 LRVLDLSYN 459
           LR L +   
Sbjct: 152 LRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 395 LKAIP-TISHFSSLRSVNLS-NNFIVHIPT--GSMP--------KGLHTLNLSRNKINTI 442
           L+A+P +I+  + LR +++     +  +P    S            L +L L    I ++
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 443 -EGLREMTRLRVLDLSYNRI 461
              +  +  L+ L +  + +
Sbjct: 199 PASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 395 LKAIP-TISHFSSLRSVNLS-NNFIVHIPT--GSMPKGLHTLNLS-RNKINTI-EGLREM 448
           L A+   I H   L  ++L     + + P   G     L  L L   + + T+   +  +
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKRLILKDCSNLLTLPLDIHRL 276

Query: 449 TRLRVLDLSYN 459
           T+L  LDL   
Sbjct: 277 TQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 395 LKAIP-TISHFSSLRSVNLSNNFIVHIPT--GSMPKGLHTLNLSR-NKINTI-------- 442
           L  +P T+  F+ L ++ L+ N +  +P    S+   L  L++    ++  +        
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASL-NRLRELSIRACPELTELPEPLASTD 174

Query: 443 --EGLREMTRLRVLDLSYNRI 461
                + +  L+ L L +  I
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGI 195

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 45/139 (32%)

Query: 366 NLSEEILHANSVIRSLNSSS-------AVAHIAGIGLKAIPTISHFSSLRSVNL----SN 414
            ++   +     +  ++  +           I   GLK  P ++   S     +     N
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 415 NFIVHIPTGS---MPKGLHTLNLSRNKINTIE---------------------------- 443
            ++  IP  +   +     TL L  N   +++                            
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 444 -GLREMTRLRVLDLSYNRI 461
            G+   +   +LD+S   +
Sbjct: 201 GGVY--SGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 14/129 (10%), Positives = 42/129 (32%), Gaps = 34/129 (26%)

Query: 394 GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN-KINTIE-----GL 445
            ++ IP++    S +++ L    +  IP+ +      +  + +S +  +  +E      L
Sbjct: 22  DIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79

Query: 446 RE----------------------MTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFE 483
            +                      +  L+ L +    +        +     +   ++ +
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 484 --FLTIIPN 490
             ++T IP 
Sbjct: 140 NPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 13/84 (15%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKI------NTIE 443
           L  I    +     L+ + + N  +   P  +          L ++ N        N  +
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 444 GLREMTRLRVLDLSYNRIFRIGHG 467
           GL        L L  N    +   
Sbjct: 153 GLC--NETLTLKLYNNGFTSVQGY 174

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYN 459
                  ++   I  IP  S+P    TL L    + TI       +  +  + +S +
Sbjct: 11  HQEEDFRVTCKDIQRIP--SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 405 SSLRSVNLS-NNFIVHIPTGS---MPKGLHTLNLSRNKINTI--EGLREMTRLRVLDL 456
           + L +V L+ N ++  I   +   +  G   L++S+  +  +  +GL  +  L   + 
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 15/77 (19%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIE-----G 444
               IP  +    S ++++LS N + H+ +    S P+ L  L+LSR +I TIE      
Sbjct: 18  NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQS 74

Query: 445 LREMTRLRVLDLSYNRI 461
           L   + L  L L+ N I
Sbjct: 75  L---SHLSTLILTGNPI 88

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG--SMPKGLHTLNLSRNKINTIEG---LRE 447
           ++++     S  SSL+ +      +  +        K L  LN++ N I + +       
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           +T L  LDLS N+I  I   
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT 167

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 395 LKAIPTISHFSS---LRSVNLSNNFIVHIPTG------SMPKGLHTLNLSRNKINTIE-G 444
           +++     +FS+   L  ++LS+N I  I          MP    +L+LS N +N I+ G
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 445 LREMTRLRVLDLSYNRIFRIGHG 467
             +  RL+ L L  N++  +  G
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
             F  L+ ++LS   I  I  G   S+   L TL L+ N I ++       ++ L+ L  
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 457 SYNRIFRIGHG 467
               +  + + 
Sbjct: 108 VETNLASLENF 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 66/510 (12%), Positives = 141/510 (27%), Gaps = 146/510 (28%)

Query: 52  HEETSSIKRDFSDLDLQAHDANVGKEEFDLRNTKSDY----FTTASPEVNAQSVNGAEKD 107
           H +  + +  +   D+ +   +   + FD ++   D      +    E++   +    KD
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV-QDMPKSILSKE--EID-HIIM--SKD 59

Query: 108 AKKGIDMIQSGHLSDPGVGRTEFWASPKLKRSCSNLESRLVLNKLTDRLPPSKSQSFEEL 167
           A  G   +              FW    L      +  + V   L        +  F   
Sbjct: 60  AVSGTLRL--------------FW---TLLSKQEEMVQKFVEEVL------RINYKF--- 93

Query: 168 QELSEKVRENYHSGSPMSVTSHFSADRVMLKKHSSSQILPSR--SR-RLWWKLFLWSHRN 224
             L   ++       P  +T  +   R  L  ++ +Q+      SR + + KL       
Sbjct: 94  --LMSPIKTEQRQ--PSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKL------- 140

Query: 225 LHKPWILKPQPHRAVVLNQQGGY-----TSDTLE--------PNQA--TKLSKTESPGSC 269
             +  +L+ +P + V+++   G        D             +     L    SP + 
Sbjct: 141 --RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 270 TGESLNKGCNGSYNEDRQSWDGFQNEVSAVWPQRQWVAFPAESSSFKRVDEWVKDLGMET 329
             E L K             D   N        R              +   ++ L    
Sbjct: 199 L-EMLQKLLYQIDPNWTSRSDHSSNI-----KLR-----------IHSIQAELRRLLKSK 241

Query: 330 PFED-----DEVAEGVIFPPSPETGKS-PARSTAHLTRRSEINLSEEILHANSVIRSLNS 383
           P+E+       V        + +   +        LT R +            V   L S
Sbjct: 242 PYENCLLVLLNVQ-------NAKAWNAFNLSCKILLTTRFK-----------QVTDFL-S 282

Query: 384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLS----- 435
           ++   HI+             +     +L   ++       +P      +   LS     
Sbjct: 283 AATTTHISLDHHS-----MTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAES 336

Query: 436 -RNKINTIEGLREMT--RL-RVLDLSYNR--------------IFRIGHGNILSK--PVF 475
            R+ + T +  + +   +L  +++ S N               +F     +I +    + 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLI 395

Query: 476 WLSFKLFEFLTIIPNCKRLSCNLYNSKSHS 505
           W      + + ++    + S      K  +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG--SMPKGLHTLNLSRNKINTIE-----GL 445
           L+ +P        +L ++ +++N +  +P G       L  L L RN++ ++       L
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132

Query: 446 REMTRLRVLDLSYNRIFRIGHG 467
              T+L  L L YN +  +  G
Sbjct: 133 ---TKLTYLSLGYNELQSLPKG 151

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 394 GLKAIPT--ISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTI-EGL-R 446
            L+A+P        +L  + L  N +  +P     S+ K L  L+L  N++ ++ +G+  
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNELQSLPKGVFD 154

Query: 447 EMTRLRVLDLSYNRIFRIGHG 467
           ++T L+ L L  N++ R+  G
Sbjct: 155 KLTSLKELRLYNNQLKRVPEG 175

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
              + LR + L++N +  +P G    +   L TL ++ NK+  +      ++  L  L L
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAGIFKELKN-LETLWVTDNKLQALPIGVFDQLVNLAELRL 116

Query: 457 SYNRI 461
             N++
Sbjct: 117 DRNQL 121

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRVLDLSYNRIFR 463
            S+  +NLS+N +       +P  +  L+L  N+I +I + +  +  L+ L+++ N++  
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487

Query: 464 IGHG 467
           +  G
Sbjct: 488 VPDG 491

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI 461
                V+ SN  + H+P   +P     L+LS+N I+ +    +  ++ LRVL LS+NRI
Sbjct: 31  ELESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLRE---MT 449
           ++++          L  +++S+N + +I    M   L  L+LS N  + +   +E   +T
Sbjct: 88  IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS-LRHLDLSFNDFDVLPVCKEFGNLT 146

Query: 450 RLRVLDLSYNRIFRIGHGNILSKPVFWLSFKL 481
           +L  L LS  +  ++    +    +  +   L
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 16/109 (14%)

Query: 367 LSEEILHANSVIRSLNSSSAVAHIAGIGLKAI-PTISHFSSLRSVNLSNNFI-----VHI 420
           + + +   +  I+ L+  +    + G G   +  T+    +L+ ++LS+N +       +
Sbjct: 76  VLQGLQTPSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133

Query: 421 PTGSMPKG--LHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRI 461
             G +     L  L L    ++          LR     + L +S N I
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 367 LSEEILHANSVIRSLNSSSAVAHIAGIGLKAI-PTISHFSSLRSVNLSNNFI-----VHI 420
           L E +L     + SL   S                ++    L  + +SNN +       +
Sbjct: 304 LCETLLEPGCQLESLWVKSC--SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 421 PTG--SMPKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRI 461
             G       L  L L+   ++          L     LR LDLS N +
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 26/112 (23%)

Query: 369 EEILHANSVIRSLN------SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI----- 417
            E+L      + +       + +    I+         +    +L  +NL +N +     
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARCKDISSA-------LRVNPALAELNLRSNELGDVGV 73

Query: 418 VHIPTG--SMPKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRI 461
             +  G  +    +  L+L    +           LR +  L+ L LS N +
Sbjct: 74  HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPK--GLHTLNLSRNKINTIEG--LREMTR 450
           L+A         LR +N SNN I  I  G+     G++ + L+ N++  ++    + +  
Sbjct: 47  LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106

Query: 451 LRVLDLSYNRIFRIGHG 467
           L+ L L  NRI  +G+ 
Sbjct: 107 LKTLMLRSNRITCVGND 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKG---LHTLNLSRNKINTIEG--LRE 447
            L  IP  I        + L+NN    +    + K    L  +N S NKI  IE      
Sbjct: 22  KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79

Query: 448 MTRLRVLDLSYNRI 461
            + +  + L+ NR+
Sbjct: 80  ASGVNEILLTSNRL 93

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LRE 447
           +  I        S +  + L++N + ++       +   L TL L  N+I  +       
Sbjct: 69  ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIG 127

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           ++ +R+L L  N+I  +  G
Sbjct: 128 LSSVRLLSLYDNQITTVAPG 147

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 23/118 (19%)

Query: 394 GLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLR 452
             +  P      +     NL    +    T +    +  +  + + I +++G++ +  +R
Sbjct: 9   IKQIFPDDAF--AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66

Query: 453 VLDLSYNRIFRIG-------------HGNILSKPVFWLSFKLFEFLTIIPNCKRLSCN 497
            L L  N++  I               GN L      L   +F+ LT   N K L   
Sbjct: 67  YLALGGNKLHDISALKELTNLTYLILTGNQLQS----LPNGVFDKLT---NLKELVLV 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDL 456
           S +  LR ++LSNN I  +       +   L++L L  NKI  +       +  L++L L
Sbjct: 53  SPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYGNKITELPKSLFEGLFSLQLLLL 111

Query: 457 SYNRIFRIGHG 467
           + N+I  +   
Sbjct: 112 NANKINCLRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG---SMPKGLHTLNLSRNKINTI-EGL-RE 447
           +  +         SL S+ L  N I  +P      +   L  L L+ NKIN +     ++
Sbjct: 68  ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS-LQLLLLNANKINCLRVDAFQD 126

Query: 448 MTRLRVLDLSYNRIFRIGHG 467
           +  L +L L  N++  I  G
Sbjct: 127 LHNLNLLSLYDNKLQTIAKG 146

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 351 SPARSTAHLTRRSEINLSEEILHA--NSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLR 408
           +P  +  +  +  ++   + I+    +   ++L+            L++ P +   +   
Sbjct: 100 APPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKG---------LRSDPDLVAQNIDV 150

Query: 409 SVNLSNNF--IVHIPTGSMPKGLHTLNLSRNKINTIEGLRE----MTRLRVLDLSYNRIF 462
            +N  +     + I   ++P+ L +LNLS N++  ++ +         L++L+LS N + 
Sbjct: 151 VLNRRSCMAATLRIIEENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209

Query: 463 RIG 465
              
Sbjct: 210 SER 212

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 368 SEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHI----PTG 423
           S+  L A ++   LN  S +A      L+ I    +   L S+NLSNN +  +       
Sbjct: 139 SDPDLVAQNIDVVLNRRSCMAAT----LRIIE--ENIPELLSLNLSNNRLYRLDDMSSIV 192

Query: 424 SMPKGLHTLNLSRNKINTIEGLREMT--RLRVLDLSYN 459
                L  LNLS N++ +   L ++   +L  L L  N
Sbjct: 193 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 25/113 (22%)

Query: 367 LSEEILHANSVIRSLN------SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI--- 417
           L + +LH    I +L       +++ VA +   GL       + +S+  ++L +  +   
Sbjct: 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLA-----GN-TSVTHLSLLHTGLGDE 198

Query: 418 --VHIPTG-SMPKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRI 461
               +       + L  LN++ N              RE   L +L L +N +
Sbjct: 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 367 LSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI-----VHIP 421
           ++  +      +  +N +S    +   GL+ +  +  F   R + L  N +       + 
Sbjct: 92  VAAVLGSGRHALDEVNLASC--QLDPAGLRTL--LPVFLRARKLGLQLNSLGPEACKDLR 147

Query: 422 TG--SMPKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRI 461
                    + TL LS N +         EGL   T +  L L +  +
Sbjct: 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 19/108 (17%)

Query: 370 EILHANSVIRSLNSSSAVAHIAGIGLKAI-PTISHFSSLRSVNLSNNFI-----VHIPTG 423
           E L  N+ ++  +              A+   +   ++L+S+N+ +NFI     + +   
Sbjct: 59  EALKTNTYVKKFSIVGT--RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116

Query: 424 -SMPKGLHTLNLSRNKINTI---------EGLREMTRLRVLDLSYNRI 461
                 L  L +       +           L + T L      + + 
Sbjct: 117 LQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.51
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.46
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.43
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.38
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.38
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.31
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.3
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.29
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.29
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.2
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.2
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.13
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.11
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.98
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.8
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.54
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.47
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.38
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.34
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.33
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.99
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.66
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.4
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.98
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.58
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.46
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.91
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	91.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.15

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=1.9e-14  Score=150.67  Aligned_cols=128  Identities=17%  Similarity=0.142  Sum_probs=106.4

Q ss_pred             hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL  451 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL  451 (507)
                      ..++|..+++|+|++|.|+.||  .|..+++|++|+|++|.|+.|++.+|.  ++|++|+|++|+|+.++.  |..|++|
T Consensus        47 P~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           47 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             CSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             CCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            3467888999999999999887  799999999999999999999998776  789999999999999863  8899999


Q ss_pred             cEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCC---CCCCCCCCcCCeeeCCCccCC
Q 010557          452 RVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEF---LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       452 ~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~---L~~L~nL~~LscnlIs~n~~~  505 (507)
                      +.|+|++|+|+.++...   +.+|+.|+|++|.|..   +..+..++.|....++.|.+.
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            99999999999988754   4578889999998843   355667777777777776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=1.8e-13  Score=130.59  Aligned_cols=128  Identities=18%  Similarity=0.293  Sum_probs=104.0

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s  450 (507)
                      .+..++ .|++|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  |..+++
T Consensus        54 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           54 TFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence            455554 4789999999998776  588899999999999999998887664  789999999999998864  788999


Q ss_pred             ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCC
Q 010557          451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~  505 (507)
                      |+.|+|++|.|+.++...   +.+|+.|+|++|.|..+.  .+..+.+|....+++|++.
T Consensus       133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            999999999999888754   457888999999985543  5777888888888887653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=1.1e-13  Score=130.79  Aligned_cols=124  Identities=19%  Similarity=0.270  Sum_probs=89.7

Q ss_pred             cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEE
Q 010557          381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVL  454 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~L  454 (507)
                      ++..++.|++++|.|+.++  .|..+++|++|+|++|.|+.+.+..|.  .+|+.|+|++|.|+.++.  |..+++|+.|
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence            4556778888888888776  677778888888888888877776665  678888888888887764  6777888888


Q ss_pred             EccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557          455 DLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       455 dLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~  504 (507)
                      +|++|+|+.++...|   ++|+.|+|++|.|..+.  .+..+.+|....++.|++
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            888888887765443   46777888888775432  366677777777766653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=2.3e-13  Score=131.54  Aligned_cols=147  Identities=20%  Similarity=0.341  Sum_probs=120.3

Q ss_pred             hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEE
Q 010557          358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLN  433 (507)
Q Consensus       358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~Ld  433 (507)
                      .+..+..|.+.++.+.....+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..+.  .+|+.|+
T Consensus        61 ~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHDISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             GCTTCCEEECTTSCCCCCGGGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCCcEEECCCCCCCCchhhcCCC-CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            3444455666666666666677765 4799999999999887  489999999999999999999987664  7899999


Q ss_pred             CCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCC
Q 010557          434 LSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       434 LS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~  505 (507)
                      |++|.|+.++.  +..+++|+.|+|++|+|+.++...   +.+|+.|+|++|.|..+.  .+..+++|....++.|+..
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            99999999864  789999999999999999988744   568899999999995543  3788889998888888653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.52  E-value=1.8e-13  Score=134.54  Aligned_cols=143  Identities=18%  Similarity=0.226  Sum_probs=111.7

Q ss_pred             ccccccCCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557          361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN  437 (507)
Q Consensus       361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N  437 (507)
                      .+..|.++.+.+........++ .|+.|++++|.|+.+| .+..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|
T Consensus        56 ~L~~L~L~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           56 RLTQLNLDRAELTKLQVDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             TCCEEECTTSCCCEEECCSCCT-TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             CCCEEECCCCccCcccCCCCCC-cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence            3444555555555444444443 5799999999999998 788999999999999999999887765  78999999999


Q ss_pred             CCCCCcC--CCCCCCccEEEccCCCCcccCCCCC---CCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557          438 KINTIEG--LREMTRLRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       438 kLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~  504 (507)
                      +|+.++.  |..+++|+.|+|++|+|+.+|.+.|   .+|+.|+|++|.|.. +..+..+..|....+..|+.
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            9999864  7889999999999999999988654   578889999999844 45666666777777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=1.7e-13  Score=129.82  Aligned_cols=124  Identities=12%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEE
Q 010557          381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVL  454 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~L  454 (507)
                      ++..|+.|+|++|.|+.++  .|..+++|++|+|++|.|..+++..|.  .+|+.|+|++|.|+.++.  |..+++|+.|
T Consensus        38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            4456677777777777653  566777777777777777777665543  567777777777777653  5667777777


Q ss_pred             EccCCCCcccCCC--CCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557          455 DLSYNRIFRIGHG--NILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       455 dLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~  504 (507)
                      +|++|+|+.||..  .+.+|+.|+|++|.|..+  ..+..+.+|....+..|++
T Consensus       118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            7777777776653  445677777777777443  2355666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.51  E-value=3.1e-13  Score=128.88  Aligned_cols=127  Identities=17%  Similarity=0.249  Sum_probs=111.1

Q ss_pred             ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557          380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV  453 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~  453 (507)
                      .++..++.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  |..+++|+.
T Consensus        32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence            45677899999999999876  799999999999999999999997765  799999999999999863  889999999


Q ss_pred             EEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCCC
Q 010557          454 LDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       454 LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~~  506 (507)
                      |+|++|.|+.++...   +..|+.|+|++|.|..+.  .+..+.+|....++.|.+..
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            999999999998855   568899999999996653  47888999888888886653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.51  E-value=4.5e-13  Score=129.44  Aligned_cols=104  Identities=22%  Similarity=0.403  Sum_probs=68.2

Q ss_pred             hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL  451 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL  451 (507)
                      +..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++.  +..+++|
T Consensus       105 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          105 FDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence            34443 3577777777777665  366777777777777777777665543  567777777777776643  5667777


Q ss_pred             cEEEccCCCCcccCCCC---CCCCCEEEcCCCCC
Q 010557          452 RVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLF  482 (507)
Q Consensus       452 ~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~L  482 (507)
                      +.|+|++|.|+.++...   +++|+.|+|++|.+
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            77777777777666533   44666777777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.50  E-value=9.1e-14  Score=134.85  Aligned_cols=142  Identities=12%  Similarity=0.141  Sum_probs=116.6

Q ss_pred             cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCC
Q 010557          360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI  439 (507)
Q Consensus       360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkL  439 (507)
                      ..+..|.++++.+.....+..++ .|+.|++++|.|+.++.|..+++|++|+|++|.|+.++.... .+|+.|+|++|.|
T Consensus        41 ~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l  118 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLAGMQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNEL  118 (263)
T ss_dssp             TTCSEEECTTSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCC
T ss_pred             CcCcEEECcCCCcccchHHhhCC-CCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCcc
Confidence            34444556665566556666664 579999999999988878999999999999999999887666 7899999999999


Q ss_pred             CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCcc
Q 010557          440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~  503 (507)
                      +.++.+..+++|+.|+|++|+|+.++. ..+.+|+.|+|++|.|..+..+..+.+|....++.|.
T Consensus       119 ~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          119 RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             SBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             CCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence            999889999999999999999998864 4567899999999999777778888887776666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=6.7e-13  Score=122.60  Aligned_cols=120  Identities=19%  Similarity=0.332  Sum_probs=59.2

Q ss_pred             cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEc
Q 010557          383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDL  456 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdL  456 (507)
                      ..++.|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  |..+++|+.|+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34455555555555444  244555555555555555555544332  455555555555555432  445555555555


Q ss_pred             cCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCc
Q 010557          457 SYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSK  502 (507)
Q Consensus       457 S~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n  502 (507)
                      ++|.|+.++...   +.+|+.|+|++|.|..+.  .+..+.+|....++.|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            555555554432   234555555555553321  1344444554444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.48  E-value=2.9e-13  Score=127.76  Aligned_cols=125  Identities=19%  Similarity=0.293  Sum_probs=97.2

Q ss_pred             ccccCCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCcc
Q 010557          380 SLNSSSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLR  452 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP---~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~  452 (507)
                      .++..++.|+|++|.|+.++   .|..+++|+.|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  |..+++|+
T Consensus        29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  108 (220)
T 2v70_A           29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK  108 (220)
T ss_dssp             CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred             CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence            34556788888888888773   378888888888888888888886665  788888888888888753  88888888


Q ss_pred             EEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557          453 VLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       453 ~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~  504 (507)
                      .|+|++|+|+.++...   +.+|+.|+|++|.|..+  ..+..+.+|....++.|++
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            8888888888876544   35778888888888543  5677788888777777754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.48  E-value=8e-13  Score=127.34  Aligned_cols=142  Identities=16%  Similarity=0.270  Sum_probs=111.4

Q ss_pred             cccccCCccccccc--hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECC
Q 010557          362 RSEINLSEEILHAN--SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS  435 (507)
Q Consensus       362 ~ldLsLn~~il~~~--s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS  435 (507)
                      +..|.++++.+..+  ..+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|+
T Consensus        63 L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A           63 LRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG  141 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTSSCT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCccCeeChhhhcCCC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence            33444444444322  2244454 5799999999999887  678899999999999999999887664  789999999


Q ss_pred             CCCCCCCcC--CCCCCCccEEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557          436 RNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       436 ~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~  504 (507)
                      +|.|+.++.  |..+++|+.|+|++|.|+.++...|   .+|+.|+|++|.|..+.  .+..+.+|....++.|+.
T Consensus       142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            999999864  8889999999999999999887544   58889999999986543  367788888888888764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.46  E-value=1.4e-12  Score=125.61  Aligned_cols=129  Identities=17%  Similarity=0.294  Sum_probs=108.2

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s  450 (507)
                      .+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  |..+++
T Consensus        56 ~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  134 (270)
T 2o6q_A           56 AFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK  134 (270)
T ss_dssp             SSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence            455554 4799999999999888  468899999999999999999987765  789999999999999864  889999


Q ss_pred             ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCCC
Q 010557          451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~~  506 (507)
                      |+.|+|++|.|+.++...   +++|+.|+|++|.|..+.  .+..+.+|....++.|.+..
T Consensus       135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            999999999999998754   458899999999996543  37788888888888776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=1.1e-12  Score=129.02  Aligned_cols=130  Identities=18%  Similarity=0.224  Sum_probs=110.0

Q ss_pred             hhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCc-C-CCCCCCcc
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE-G-LREMTRLR  452 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp-~-L~~L~sL~  452 (507)
                      ..+..++ .|+.|++++|.|+.++....+++|++|+|++|.|+.++..... .+|+.|+|++|+|+.++ . |..+++|+
T Consensus        49 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~  127 (290)
T 1p9a_G           49 ATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (290)
T ss_dssp             GGGTTCT-TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             HHhhcCC-CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence            4566664 5799999999999998668999999999999999998874433 78999999999999986 3 99999999


Q ss_pred             EEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCCC
Q 010557          453 VLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       453 ~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~~  506 (507)
                      .|+|++|+|+.++.+.|   .+|+.|+|++|+|..++  .+..+.+|....++.|.+..
T Consensus       128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence            99999999999998665   48899999999996653  35778888888888886653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=5.6e-13  Score=131.69  Aligned_cols=146  Identities=16%  Similarity=0.212  Sum_probs=110.4

Q ss_pred             hcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC
Q 010557          359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK  438 (507)
Q Consensus       359 L~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk  438 (507)
                      +..+..|.++++.+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.+++....++|+.|+|++|.
T Consensus        62 l~~L~~L~L~~n~i~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~  140 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAPLKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ  140 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cCCCCEEEccCCcCCCChhHccCC-CCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCc
Confidence            334444556665555555566664 4788888888888888788888888888888888887663323788888888888


Q ss_pred             CCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          439 INTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       439 Ls~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      |+.++.+..+++|+.|+|++|.|+.++. ..+++|+.|+|++|.|..+..+..+.+|....+++|.+.
T Consensus       141 l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC
Confidence            8888778888888888888888887764 556688888888888877666777888888888777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.44  E-value=4.6e-13  Score=131.50  Aligned_cols=144  Identities=22%  Similarity=0.213  Sum_probs=107.9

Q ss_pred             cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCC
Q 010557          360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI  439 (507)
Q Consensus       360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkL  439 (507)
                      ..+..|.++++.+.....+..++ .|+.|++++|.|+.++.+..+++|++|+|++|.|+.++......+|+.|+|++|.|
T Consensus        68 ~~L~~L~L~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCEEEccCCccCCCcccccCC-CCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcC
Confidence            34444556665555555566654 47888888888888888888888888888888888875432237888888888888


Q ss_pred             CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557          440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~  504 (507)
                      +.++.+..+++|+.|+|++|+|+.++. ..++.|+.|+|++|.|..++.+..+.+|....+++|++
T Consensus       147 ~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          147 TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             CcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence            888778888888888888888887654 45668888888888887777777788877777666643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.44  E-value=1.8e-13  Score=126.24  Aligned_cols=145  Identities=16%  Similarity=0.145  Sum_probs=115.6

Q ss_pred             cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557          360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN  437 (507)
Q Consensus       360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N  437 (507)
                      ..+..+.++++.+.....+..++ .|+.|++++|.++.++.+..+++|++|+|++|.|+...+..+.  ++|+.|+|++|
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             CCccEEeccCCCccChHHHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            34444555555555545666665 5899999999998888899999999999999999984444443  78999999999


Q ss_pred             CCCC--CcCCCCCCCccEEEccCCC-CcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          438 KINT--IEGLREMTRLRVLDLSYNR-IFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       438 kLs~--Lp~L~~L~sL~~LdLS~N~-Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      .|+.  +..+..+++|+.|+|++|. ++.++. ..++.|+.|++++|.|..+..+..+++|....+++|.+.
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence            9997  3458899999999999998 888874 456789999999999988778888999999888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=8.5e-13  Score=132.98  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=76.7

Q ss_pred             cccCCcEEEccCCCCCCCC--CCC-CCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557          381 LNSSSAVAHIAGIGLKAIP--TIS-HFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV  453 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~LP--~L~-~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~  453 (507)
                      ++..++.|+|++|.|+.++  .|. .+++|+.|+|++|.|+.+++..|.  .+|+.|+|++|+|+.++.  |..+++|+.
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            4555666777777777665  344 667777777777777776665554  567777777777766543  666677777


Q ss_pred             EEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCC-C-C---CCCCcCCeeeCCCccCC
Q 010557          454 LDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLT-I-I---PNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       454 LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~-~-L---~nL~~LscnlIs~n~~~  505 (507)
                      |+|++|+|+.++...|   .+|+.|+|++|.|..++ . +   ..+.+|....+++|.+.
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            7777777776654333   36666777777664432 1 1   44566666666665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.43  E-value=7.8e-13  Score=130.67  Aligned_cols=146  Identities=18%  Similarity=0.231  Sum_probs=120.8

Q ss_pred             hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCC
Q 010557          358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN  437 (507)
Q Consensus       358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~N  437 (507)
                      .+..+..|.++++.+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.+++.....+|+.|+|++|
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A           83 NLTKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA  161 (308)
T ss_dssp             TCCSCCEEECCSCCCSCCGGGTTCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCCCCCEEEccCCcCCCchhhcCCC-CCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC
Confidence            3344455666666666666777765 479999999999999889999999999999999999887333378999999999


Q ss_pred             CCCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557          438 KINTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       438 kLs~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~  504 (507)
                      .|+.++.+..+++|+.|+|++|.|+.++. ..++.|+.|+|++|.|..+..+..+.+|....+++|.+
T Consensus       162 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          162 QVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             cCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence            99998879999999999999999998875 56779999999999997766688888888777776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.43  E-value=7.9e-13  Score=122.78  Aligned_cols=103  Identities=23%  Similarity=0.318  Sum_probs=93.9

Q ss_pred             ccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEE
Q 010557          380 SLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVL  454 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~L  454 (507)
                      .++..++.|++++|.|+.+| .|..+++|+.|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  |..+++|+.|
T Consensus        28 ~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            35678999999999999999 899999999999999999999998776  899999999999999863  9999999999


Q ss_pred             EccCCCCcccCCCCC---CCCCEEEcCCCCC
Q 010557          455 DLSYNRIFRIGHGNI---LSKPVFWLSFKLF  482 (507)
Q Consensus       455 dLS~N~Is~IP~~~f---~sL~~L~LS~N~L  482 (507)
                      +|++|.|+.++...|   .+|+.|+|++|.+
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            999999999998654   4788999999987

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.42  E-value=4.2e-13  Score=131.80  Aligned_cols=117  Identities=27%  Similarity=0.284  Sum_probs=60.6

Q ss_pred             ccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC
Q 010557          365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG  444 (507)
Q Consensus       365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~  444 (507)
                      |.++.+.+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.++.....++|+.|+|++|.|+.++.
T Consensus        95 L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A           95 LFLDENKVKDLSSLKDLK-KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             EECCSSCCCCGGGGTTCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             EECCCCcCCCChhhccCC-CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh
Confidence            344444444444444443 2455555555555555555555555555555555555221112455555555555555544


Q ss_pred             CCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLF  482 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~L  482 (507)
                      +..+++|+.|+|++|.|+.++. ..+++|+.|+|++|.+
T Consensus       174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence            5555555555555555555543 3344555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=5.3e-13  Score=129.47  Aligned_cols=139  Identities=14%  Similarity=0.194  Sum_probs=116.3

Q ss_pred             cCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCC
Q 010557          366 NLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL  445 (507)
Q Consensus       366 sLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L  445 (507)
                      .+....+.....+..++ .|+.|++++|.|+.++.+..+++|+.|+|++|.|+.+++....++|+.|+|++|+|+.++.+
T Consensus        25 ~l~~~~i~~~~~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~  103 (263)
T 1xeu_A           25 NLGKQSVTDLVSQKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI  103 (263)
T ss_dssp             HHTCSCTTSEECHHHHT-TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC
T ss_pred             HhcCCCcccccchhhcC-cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc
Confidence            33444444444455564 47999999999999999999999999999999999998822227999999999999999886


Q ss_pred             CCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          446 REMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       446 ~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .. ++|+.|+|++|+|+.++. ..+.+|+.|+|++|.|..+..+..+.+|....++.|.+..
T Consensus       104 ~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB
T ss_pred             cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc
Confidence            66 999999999999999865 5677999999999999888888899999999998887653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=1.8e-12  Score=122.85  Aligned_cols=107  Identities=22%  Similarity=0.315  Sum_probs=94.6

Q ss_pred             hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTR  450 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~s  450 (507)
                      ..+..++ .|+.|+|++|.|+.+|  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|+|+.+|. +..+++
T Consensus        58 ~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  136 (229)
T 3e6j_A           58 GVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH  136 (229)
T ss_dssp             TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT
T ss_pred             HHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCC
Confidence            4466664 5899999999999998  579999999999999999999997765  899999999999999975 889999


Q ss_pred             ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCC
Q 010557          451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFE  483 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls  483 (507)
                      |+.|+|++|+|+.++...   +.+|+.|+|++|.+.
T Consensus       137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            999999999999998754   458899999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.40  E-value=5.9e-12  Score=121.49  Aligned_cols=128  Identities=18%  Similarity=0.263  Sum_probs=89.0

Q ss_pred             hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT  449 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~  449 (507)
                      ..+..++ .|+.|++++|.|+.++  .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++.  +..++
T Consensus        99 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A           99 ATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             HHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            3444443 4677888888877664  577778888888888888777776553  678888888888777653  77777


Q ss_pred             CccEEEccCCCCcccCCC---CCCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557          450 RLRVLDLSYNRIFRIGHG---NILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~~---~f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~  504 (507)
                      +|+.|+|++|.|+.+...   .+++|+.|+|++|.|..+.  .+..+.+|....++.|++
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            888888888887776443   3347777888888775543  356677777777776653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.38  E-value=1.7e-12  Score=141.46  Aligned_cols=145  Identities=22%  Similarity=0.224  Sum_probs=115.1

Q ss_pred             hcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC
Q 010557          359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK  438 (507)
Q Consensus       359 L~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk  438 (507)
                      +..+..|.++.+.+.....+..++ .|+.|+|++|.|+.++.|..|++|+.|+|++|.|..++......+|+.|+|++|.
T Consensus        64 l~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~  142 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKPLTNLK-NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK  142 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCT-TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             CCCCCEEEeeCCCCCCChhhccCC-CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc
Confidence            334445666666666555566665 4799999999999888889999999999999999987653333789999999999


Q ss_pred             CCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccC
Q 010557          439 INTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       439 Ls~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~  504 (507)
                      |+.++.+..|++|+.|+|++|.|+.++. ..+++|+.|+|++|.|..++.+..|.+|....++.|.+
T Consensus       143 l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          143 ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred             cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence            9998778899999999999999987644 56678899999999997777788888888877777643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.38  E-value=2.1e-12  Score=140.89  Aligned_cols=148  Identities=20%  Similarity=0.202  Sum_probs=124.3

Q ss_pred             hhcccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCC
Q 010557          358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRN  437 (507)
Q Consensus       358 qL~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~N  437 (507)
                      .|..+..|.++.+.+.....+..++ .|+.|+|++|.|+.++.|..|++|+.|+|++|.|..++......+|+.|+|++|
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS
T ss_pred             cCCCCCEEECcCCCCCCChHHccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC
Confidence            3334445666666666666677775 579999999999998889999999999999999999875443489999999999


Q ss_pred             CCCCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          438 KINTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       438 kLs~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .|+.++.+..|++|+.|+|++|.|+.++. ..+.+|+.|+|++|.|..+..+..|.+|....++.|.+..
T Consensus       120 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC
Confidence            99999889999999999999999998854 5677999999999999776558899999999998887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.38  E-value=4.6e-12  Score=114.35  Aligned_cols=104  Identities=24%  Similarity=0.442  Sum_probs=91.7

Q ss_pred             ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557          380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV  453 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~  453 (507)
                      .++..++.|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  +..+++|+.
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence            34567899999999999887  578999999999999999999987664  799999999999999864  789999999


Q ss_pred             EEccCCCCcccCCCC---CCCCCEEEcCCCCCC
Q 010557          454 LDLSYNRIFRIGHGN---ILSKPVFWLSFKLFE  483 (507)
Q Consensus       454 LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls  483 (507)
                      |+|++|.|+.++...   +.+|+.|+|++|.+.
T Consensus       105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            999999999998855   458899999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=3e-12  Score=131.67  Aligned_cols=142  Identities=18%  Similarity=0.202  Sum_probs=109.7

Q ss_pred             ccccCCccccc--cchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCC
Q 010557          363 SEINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR  436 (507)
Q Consensus       363 ldLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~  436 (507)
                      ..|.++.+.+.  ....+..++ .|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++
T Consensus        91 ~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A           91 EILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            33444444443  334566665 4799999999999887  588999999999999999999887765  7899999998


Q ss_pred             -CCCCCCcC--CCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccCC
Q 010557          437 -NKINTIEG--LREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       437 -NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~~  505 (507)
                       |.+..++.  |..+++|+.|+|++|.|+.+|. ..+.+|+.|+|++|.|..  +..+..+.+|....++.|.+.
T Consensus       170 ~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          170 LKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             CTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence             45666653  8889999999999999998886 455688999999999844  467778888888877777553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.38  E-value=2.9e-12  Score=120.88  Aligned_cols=105  Identities=22%  Similarity=0.341  Sum_probs=93.1

Q ss_pred             hhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s  450 (507)
                      .+..++ .|+.|+|++|.|+.+ | .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|+|+.++  .|..+++
T Consensus        51 ~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  129 (220)
T 2v9t_B           51 AFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN  129 (220)
T ss_dssp             SSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence            455564 579999999999977 5 899999999999999999999998765  79999999999999984  3999999


Q ss_pred             ccEEEccCCCCcccCCCCC---CCCCEEEcCCCCC
Q 010557          451 LRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLF  482 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~L  482 (507)
                      |+.|+|++|.|+.++...|   .+|+.|+|++|.+
T Consensus       130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            9999999999999987654   4788999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.38  E-value=3.6e-12  Score=131.47  Aligned_cols=128  Identities=20%  Similarity=0.190  Sum_probs=94.3

Q ss_pred             hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCC-CCCCCCcC--CCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSR-NKINTIEG--LREM  448 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~-NkLs~Lp~--L~~L  448 (507)
                      ..+..++ .|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++ |.+..++.  |..+
T Consensus       117 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  195 (452)
T 3zyi_A          117 GAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL  195 (452)
T ss_dssp             TTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence            4455554 4688888888888776  477788888888888888888776665  6788888887 45666653  7788


Q ss_pred             CCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccC
Q 010557          449 TRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       449 ~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~  504 (507)
                      ++|+.|+|++|.|+.+|. ..+.+|+.|+|++|.|..  +..+..+.+|....+++|.+
T Consensus       196 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             TTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             CCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence            888888888888888765 445688888888888844  35567777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.37  E-value=3.3e-12  Score=117.85  Aligned_cols=104  Identities=20%  Similarity=0.275  Sum_probs=90.7

Q ss_pred             ccccCCcEEEccCCCCCCCC-C--CCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCcc
Q 010557          380 SLNSSSAVAHIAGIGLKAIP-T--ISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLR  452 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP-~--L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~  452 (507)
                      .++..++.|++++|.|+.++ .  |..+++|++|+|++|.|+.+.+..|.  .+|+.|+|++|+|+.++.  |..+++|+
T Consensus        26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            34557899999999999887 3  89999999999999999999887775  789999999999999753  88999999


Q ss_pred             EEEccCCCCcccCCC---CCCCCCEEEcCCCCCC
Q 010557          453 VLDLSYNRIFRIGHG---NILSKPVFWLSFKLFE  483 (507)
Q Consensus       453 ~LdLS~N~Is~IP~~---~f~sL~~L~LS~N~Ls  483 (507)
                      .|+|++|+|+.++..   .+++|+.|+|++|.|.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999999999988654   4558899999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.36  E-value=3.2e-12  Score=122.82  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=63.6

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s  450 (507)
                      .+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.++.++.  +..+++
T Consensus        47 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           47 SFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             Hhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            344443 3566666666666554  466666666666666666666655443  566666666666666543  666666


Q ss_pred             ccEEEccCCCCccc--CC--CCCCCCCEEEcCCCCCC
Q 010557          451 LRVLDLSYNRIFRI--GH--GNILSKPVFWLSFKLFE  483 (507)
Q Consensus       451 L~~LdLS~N~Is~I--P~--~~f~sL~~L~LS~N~Ls  483 (507)
                      |+.|+|++|.|+.+  |.  ..+.+|+.|+|++|.|.
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            66666666666653  22  23456666666666663

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.36  E-value=7.9e-12  Score=120.59  Aligned_cols=143  Identities=18%  Similarity=0.216  Sum_probs=115.4

Q ss_pred             ccccCCccccc--cchhhhccccCCcEEEccCCC-CCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECC
Q 010557          363 SEINLSEEILH--ANSVIRSLNSSSAVAHIAGIG-LKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS  435 (507)
Q Consensus       363 ldLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~-Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS  435 (507)
                      ..|.+..+.+.  ....+..++ .|++|++++|. ++.+ + .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|+
T Consensus        59 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           59 TILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence            34444444343  234566664 57999999997 8887 4 799999999999999999999887665  789999999


Q ss_pred             CCCCCCCcC--CCCCCCccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccCCC
Q 010557          436 RNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       436 ~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      +|.|+.++.  +..+++|+.|+|++|.|+.++...   +.+|+.|+|++|.|..  +..+..+++|....++.|.+..
T Consensus       138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            999999864  889999999999999999998754   4588999999999944  5678888899988888886643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=8.6e-12  Score=128.27  Aligned_cols=119  Identities=19%  Similarity=0.190  Sum_probs=75.9

Q ss_pred             CcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc--CCCCCCCccEEEccCC
Q 010557          385 SAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYN  459 (507)
Q Consensus       385 Lt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS~N  459 (507)
                      |+.|++++ |.+..++  .|..+++|++|+|++|.|+.++......+|+.|+|++|.|+.++  .|..+++|+.|+|++|
T Consensus       162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            56666666 3445554  46666777777777777776665333356777777777777652  2667777777777777


Q ss_pred             CCcccCCCCC---CCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCcc
Q 010557          460 RIFRIGHGNI---LSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       460 ~Is~IP~~~f---~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~  503 (507)
                      +|+.++...|   ++|+.|+|++|.|..+  ..+..+.+|....++.|+
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            7777665433   4667777777777443  235566666666666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.34  E-value=1.1e-11  Score=114.33  Aligned_cols=104  Identities=25%  Similarity=0.438  Sum_probs=89.9

Q ss_pred             hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL  451 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL  451 (507)
                      +..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++.  |..+++|
T Consensus        48 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           48 FDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence            45554 5799999999999887  478999999999999999999887664  789999999999999864  7899999


Q ss_pred             cEEEccCCCCcccCCCC---CCCCCEEEcCCCCC
Q 010557          452 RVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLF  482 (507)
Q Consensus       452 ~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~L  482 (507)
                      +.|+|++|.|+.++...   +.+|+.|+|++|.+
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            99999999999988754   45888999999976

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=1.8e-12  Score=130.67  Aligned_cols=105  Identities=23%  Similarity=0.230  Sum_probs=92.9

Q ss_pred             ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccE
Q 010557          380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRV  453 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~  453 (507)
                      .++ .|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++  .|..+++|+.
T Consensus        62 ~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           62 RLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             CCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccc-ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence            454 5799999999999887  699999999999999999999987765  79999999999999974  3999999999


Q ss_pred             EEccCCCCcccCCCC------CCCCCEEEcCCCCCCCC
Q 010557          454 LDLSYNRIFRIGHGN------ILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       454 LdLS~N~Is~IP~~~------f~sL~~L~LS~N~Ls~L  485 (507)
                      |+|++|+|+.+|...      +.+|+.|+|++|.|..+
T Consensus       141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             EECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             EECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            999999999998754      56899999999999654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.34  E-value=1.5e-12  Score=116.32  Aligned_cols=123  Identities=16%  Similarity=0.101  Sum_probs=79.3

Q ss_pred             cccCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC-CcC-CCCCCCccEEE
Q 010557          381 LNSSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT-IEG-LREMTRLRVLD  455 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~Ld  455 (507)
                      .+..++.|++++|.|+  .+| .+..+++|++|+|++|.|+.+.......+|+.|+|++|.|+. ++. +..+++|+.|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3455677777777777  676 567777777777777777776211112677777777777777 454 44577777777


Q ss_pred             ccCCCCcccCC----CCCCCCCEEEcCCCCCCCCC-----CCCCCCcCCeeeCCCcc
Q 010557          456 LSYNRIFRIGH----GNILSKPVFWLSFKLFEFLT-----IIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       456 LS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~L~-----~L~nL~~LscnlIs~n~  503 (507)
                      |++|.|+.++.    ..++.|+.|+|++|.|..+.     .+..+++|....+..+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            77777777652    34557777777777774433     35555565555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.34  E-value=5e-12  Score=119.30  Aligned_cols=106  Identities=19%  Similarity=0.277  Sum_probs=92.8

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc-C-CCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE-G-LREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp-~-L~~L~s  450 (507)
                      .+..++ .|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++ . |..+++
T Consensus        52 ~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           52 IFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             CGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             hhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            356665 4799999999999886  799999999999999999999997665  79999999999999984 3 999999


Q ss_pred             ccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCC
Q 010557          451 LRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFE  483 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls  483 (507)
                      |+.|+|++|+|+.++...   +.+|+.|+|++|.|.
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            999999999999986654   458889999999873

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.34  E-value=1e-11  Score=115.28  Aligned_cols=116  Identities=26%  Similarity=0.337  Sum_probs=99.2

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCC
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR  460 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~  460 (507)
                      +.+++++|.|+.+| .+.  .+|+.|+|++|.|+.++. .|.  .+|+.|+|++|.|+.++.  |..+++|+.|+|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            57899999999999 553  699999999999999884 343  799999999999999864  9999999999999999


Q ss_pred             CcccCCCCC---CCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557          461 IFRIGHGNI---LSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       461 Is~IP~~~f---~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~  504 (507)
                      |+.++...|   .+|+.|+|++|.|..+.  .+..+.+|....++.|+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            999987654   58899999999996543  477888888888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=1.7e-11  Score=113.09  Aligned_cols=118  Identities=20%  Similarity=0.231  Sum_probs=101.6

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCC-CCC--CCCcEEECCCCCCCCC-cC-CCCCCCccEEEccCC
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTG-SMP--KGLHTLNLSRNKINTI-EG-LREMTRLRVLDLSYN  459 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~-sf~--~sL~~LdLS~NkLs~L-p~-L~~L~sL~~LdLS~N  459 (507)
                      +.+++++|.|+.+| .+..  +|+.|+|++|.|+.+++. .+.  .+|+.|+|++|.|+++ +. |..+++|+.|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            67899999999999 5544  999999999999999885 343  7999999999999997 43 999999999999999


Q ss_pred             CCcccCCCC---CCCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccCC
Q 010557          460 RIFRIGHGN---ILSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       460 ~Is~IP~~~---f~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~~  505 (507)
                      +|+.++...   +.+|+.|+|++|.|..  +..+..+.+|....++.|++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999998754   4688999999999954  467888889988888888653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.33  E-value=2.4e-11  Score=109.66  Aligned_cols=119  Identities=20%  Similarity=0.296  Sum_probs=102.2

Q ss_pred             CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCC
Q 010557          385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYN  459 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N  459 (507)
                      .+.+++++|+++.+| .+  .++|+.|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++.  |..+++|+.|+|++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            367899999999998 44  37999999999999999987764  799999999999999864  789999999999999


Q ss_pred             CCcccCCCC---CCCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557          460 RIFRIGHGN---ILSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       460 ~Is~IP~~~---f~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~  505 (507)
                      .|+.++...   +.+|+.|+|++|.|..+..  +..+.+|....++.|++.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            999998754   4689999999999965433  577888999888888754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.33  E-value=1.7e-11  Score=128.23  Aligned_cols=124  Identities=15%  Similarity=0.180  Sum_probs=104.2

Q ss_pred             ccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC
Q 010557          380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN  459 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N  459 (507)
                      .++..|++|++++|.|+.+|.|..+++|++|++++|.|+.++...  .+|+.|+|++|.|+++|.+..+++|+.|++++|
T Consensus       128 ~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            455678999999999999998999999999999999999877543  589999999999999988999999999999999


Q ss_pred             CCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          460 RIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       460 ~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .|+.+|.. ..+|+.|++++|.+..++.++.+++|....++.|.+..
T Consensus       206 ~l~~l~~~-~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          206 SLKKLPDL-PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSSCCCC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cCCcCCCC-cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence            99987753 35888899999888776678888888888887776543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.32  E-value=1.6e-11  Score=126.73  Aligned_cols=119  Identities=18%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             CcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCC-cC-CCCCCCccEEEccCC
Q 010557          385 SAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EG-LREMTRLRVLDLSYN  459 (507)
Q Consensus       385 Lt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~L-p~-L~~L~sL~~LdLS~N  459 (507)
                      |+.|++++ |.+..++  .|..+++|++|+|++|.|+.++......+|+.|+|++|.|+.+ +. |..+++|+.|+|++|
T Consensus       173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence            45555555 3444444  4566666666666666666665433335666666666666665 22 666667777777777


Q ss_pred             CCcccCCCC---CCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCcc
Q 010557          460 RIFRIGHGN---ILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       460 ~Is~IP~~~---f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~  503 (507)
                      +|+.++...   +++|+.|+|++|.|..+  ..+..+.+|....++.|+
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            776665533   34666777777777443  234556666666666664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=1.1e-11  Score=112.54  Aligned_cols=95  Identities=23%  Similarity=0.403  Sum_probs=53.1

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCC
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR  460 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~  460 (507)
                      +.+++++|.|+.+| .+  .++|++|+|++|.|+.+++..|.  .+|+.|+|++|+|+.++.  |..+++|+.|+|++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            45556666666555 33  25566666666666666554443  456666666666665543  4556666666666666


Q ss_pred             CcccCCCC---CCCCCEEEcCCCCC
Q 010557          461 IFRIGHGN---ILSKPVFWLSFKLF  482 (507)
Q Consensus       461 Is~IP~~~---f~sL~~L~LS~N~L  482 (507)
                      |+.++...   +.+|+.|+|++|.|
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            66555432   23555566666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.31  E-value=5.8e-12  Score=125.69  Aligned_cols=99  Identities=16%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             CCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCCCcc-cCC--CCCCCCCEEEcC
Q 010557          404 FSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFR-IGH--GNILSKPVFWLS  478 (507)
Q Consensus       404 L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~Is~-IP~--~~f~sL~~L~LS  478 (507)
                      +++|++|+|++|.|+.++..... .+|+.|+|++|.|++++. +..+++|+.|+|++|.+.. +|.  ..+++|+.|+|+
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            55555555555555544432111 455555555555555532 5555555555555555442 332  233455556666


Q ss_pred             CCCC--CCCCCCCCCCcCCeeeCCCc
Q 010557          479 FKLF--EFLTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       479 ~N~L--s~L~~L~nL~~LscnlIs~n  502 (507)
                      +|.+  ..+..+.++++|....+++|
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCC
Confidence            5544  22344555555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.30  E-value=6.6e-12  Score=131.45  Aligned_cols=108  Identities=18%  Similarity=0.224  Sum_probs=90.2

Q ss_pred             hhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT  449 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~  449 (507)
                      ..|..++. |++|+|++|.|+.|+  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|+|+.++.  |+.|+
T Consensus        70 ~~f~~l~~-L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~  148 (635)
T 4g8a_A           70 YSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  148 (635)
T ss_dssp             TTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred             HHHhCCCC-CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence            45677754 799999999999886  689999999999999999999887665  789999999999999864  88999


Q ss_pred             CccEEEccCCCCcccCC----CCCCCCCEEEcCCCCCCC
Q 010557          450 RLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLFEF  484 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~  484 (507)
                      +|+.|+|++|.|+.++.    ..+..|+.|+|++|.|..
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             ccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            99999999999986543    345688999999998843

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.30  E-value=8.1e-12  Score=115.09  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC--CcCCCCCCCccEEEccCCCC
Q 010557          384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT--IEGLREMTRLRVLDLSYNRI  461 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~--Lp~L~~L~sL~~LdLS~N~I  461 (507)
                      .|+.|++++|.|+.+|.+..+++|++|+|++|.++.++.....++|+.|+|++|.|+.  +..+..+++|+.|+|++|.|
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence            4799999999999999999999999999999998887643334799999999999997  45699999999999999999


Q ss_pred             ccc-CC--CCCCCCCEEEcCCCC-CCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          462 FRI-GH--GNILSKPVFWLSFKL-FEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       462 s~I-P~--~~f~sL~~L~LS~N~-Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      +.. +.  ..++.|+.|+|++|. +..++.+..+++|....+++|.+..
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred             CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence            963 22  567899999999998 8777788889999998888887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.30  E-value=8.9e-12  Score=122.81  Aligned_cols=143  Identities=14%  Similarity=0.179  Sum_probs=116.0

Q ss_pred             cccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC
Q 010557          362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT  441 (507)
Q Consensus       362 ~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~  441 (507)
                      +..+.+..+.+.....+..++ .|+.|++++|.++.++.+..+++|+.|+|++|.|+.++.....++|+.|+|++|.|+.
T Consensus       201 L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          201 LHYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             CCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             cceeecccCCCCCCchhhcCC-cCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC
Confidence            334455555555545465554 5799999999999888889999999999999999998543333799999999999999


Q ss_pred             CcCCCCCCCccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          442 IEGLREMTRLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       442 Lp~L~~L~sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      ++.+..+++|+.|+|++|.|+.++.   ..+++|+.|+|++|.+..+..+..+..|....+++|.+.
T Consensus       280 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence            9889999999999999999997664   457799999999999977666888999999999988765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=2.1e-12  Score=117.03  Aligned_cols=98  Identities=17%  Similarity=0.231  Sum_probs=46.3

Q ss_pred             CcEEEccCCCCCCCCCCCCCC-CCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCC
Q 010557          385 SAVAHIAGIGLKAIPTISHFS-SLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI  461 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP~L~~L~-sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~I  461 (507)
                      ++.|++++|.|+.++.+..+. +|++|+|++|.|+.+.......+|+.|+|++|.|+.++.  +..+++|+.|+|++|.|
T Consensus        21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL  100 (176)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence            455555555555544333333 555555555555554211111445555555555555432  24455555555555555


Q ss_pred             cccCC----CCCCCCCEEEcCCCCC
Q 010557          462 FRIGH----GNILSKPVFWLSFKLF  482 (507)
Q Consensus       462 s~IP~----~~f~sL~~L~LS~N~L  482 (507)
                      +.+|.    ..+++|+.|+|++|.|
T Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A          101 VELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             CCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CcchhhHhhhcCCCCCEEEecCCCC
Confidence            54443    2233455555555555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.6e-11  Score=112.33  Aligned_cols=94  Identities=26%  Similarity=0.392  Sum_probs=46.4

Q ss_pred             EEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCC
Q 010557          387 VAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRI  461 (507)
Q Consensus       387 ~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~I  461 (507)
                      .+++++|.|+.+| .+.  ++|+.|+|++|.|+.+++..|.  .+|+.|+|++|+|+.++.  |..+++|+.|+|++|+|
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            4455555555555 332  4555555555555555444332  445555555555555432  44555555555555555


Q ss_pred             cccCCCC---CCCCCEEEcCCCCC
Q 010557          462 FRIGHGN---ILSKPVFWLSFKLF  482 (507)
Q Consensus       462 s~IP~~~---f~sL~~L~LS~N~L  482 (507)
                      +.++...   +.+|+.|+|++|.|
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ceeCHHHhccccCCCEEEeCCCCc
Confidence            5554432   23444555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.29  E-value=3.6e-12  Score=111.69  Aligned_cols=118  Identities=17%  Similarity=0.066  Sum_probs=94.0

Q ss_pred             ccCCcEEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCC-CcC-CCCCCCccEEEc
Q 010557          382 NSSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINT-IEG-LREMTRLRVLDL  456 (507)
Q Consensus       382 p~sLt~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdL  456 (507)
                      +..++.|++++|.++  .+| .+..+++|++|+|++|.|+.+......++|+.|+|++|.|+. +|. +..+++|+.|+|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            456899999999998  788 779999999999999999998222222789999999999998 665 566899999999


Q ss_pred             cCCCCcccC--C--CCCCCCCEEEcCCCCCCCCCC-----CCCCCcCCeeeC
Q 010557          457 SYNRIFRIG--H--GNILSKPVFWLSFKLFEFLTI-----IPNCKRLSCNLY  499 (507)
Q Consensus       457 S~N~Is~IP--~--~~f~sL~~L~LS~N~Ls~L~~-----L~nL~~LscnlI  499 (507)
                      ++|.|+.++  .  ..++.|+.|++++|.|..+..     +..+++|....+
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            999999865  2  456789999999999865543     555666665444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.29  E-value=2e-11  Score=129.26  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=48.2

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS~  458 (507)
                      |++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|++|+|++|.|+.++  .+..+++|+.|+|++
T Consensus        58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  137 (606)
T 3vq2_A           58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH  137 (606)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred             CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence            455555555555442  445555555555555555555444332  44555555555555543  245555555555555


Q ss_pred             CCCcc--cCC--CCCCCCCEEEcCCCCC
Q 010557          459 NRIFR--IGH--GNILSKPVFWLSFKLF  482 (507)
Q Consensus       459 N~Is~--IP~--~~f~sL~~L~LS~N~L  482 (507)
                      |.|+.  +|.  +.+.+|+.|+|++|.+
T Consensus       138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          138 NFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             SCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             CcccceechHhHhhcCCCCEEEccCCcc
Confidence            55543  222  2334555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=2.4e-12  Score=126.40  Aligned_cols=121  Identities=13%  Similarity=0.081  Sum_probs=83.6

Q ss_pred             CcEEEccCCCCCC---CC---CCCCCCCCCEEEccCCCCCCcCCC---CC--CCCCcEEECCCCCCCCC-c-CCCCC---
Q 010557          385 SAVAHIAGIGLKA---IP---TISHFSSLRSVNLSNNFIVHIPTG---SM--PKGLHTLNLSRNKINTI-E-GLREM---  448 (507)
Q Consensus       385 Lt~L~LS~N~Lt~---LP---~L~~L~sL~~LdLS~N~Is~Ipp~---sf--~~sL~~LdLS~NkLs~L-p-~L~~L---  448 (507)
                      |++|++++|.+..   ++   .+..+++|++|+|++|.|+.++..   .+  ..+|+.|+|++|.|+.+ | .+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            4555555555432   21   234455555555555555443331   11  16788888888888886 4 35554   


Q ss_pred             CCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          449 TRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       449 ~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      ++|+.|+|++|+|+.||...+++|+.|+|++|.|..++.+..+++|....++.|++.
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence            689999999999999988888899999999999977666788888888888888764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.29  E-value=2.1e-11  Score=125.82  Aligned_cols=128  Identities=19%  Similarity=0.229  Sum_probs=95.0

Q ss_pred             hhhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMT  449 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~  449 (507)
                      ..+..++ .|+.|+|++|.|+.+ | .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.+.  .|..++
T Consensus        50 ~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           50 DEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            4455554 468888888888866 4 788888888888888888888877654  78888888888888763  378888


Q ss_pred             CccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557          450 RLRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~  504 (507)
                      +|+.|+|++|.|+.++...   +.+|+.|+|++|.+..+.  .+.++.+|....++.+.+
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            8888888888888876643   447788888888885543  355666666655555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.28  E-value=2.9e-12  Score=116.04  Aligned_cols=119  Identities=15%  Similarity=0.149  Sum_probs=100.6

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT  441 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~  441 (507)
                      .|.+.++.+.....+..+...|+.|++++|.|+.++.|..+++|++|+|++|.|+.+++..+.  ++|+.|+|++|.|+.
T Consensus        23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  102 (176)
T 1a9n_A           23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE  102 (176)
T ss_dssp             EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc
Confidence            344555555555566666667999999999999889999999999999999999999876643  799999999999999


Q ss_pred             CcC---CCCCCCccEEEccCCCCcccCC------CCCCCCCEEEcCCCCC
Q 010557          442 IEG---LREMTRLRVLDLSYNRIFRIGH------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       442 Lp~---L~~L~sL~~LdLS~N~Is~IP~------~~f~sL~~L~LS~N~L  482 (507)
                      ++.   +..+++|+.|+|++|.|+.+|.      ..++.|+.|+++.|.+
T Consensus       103 ~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          103 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            864   8889999999999999998886      3567899999998876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.28  E-value=3.6e-11  Score=130.62  Aligned_cols=129  Identities=20%  Similarity=0.256  Sum_probs=91.6

Q ss_pred             ccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC
Q 010557          365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG  444 (507)
Q Consensus       365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~  444 (507)
                      |.++.+.+..+.   .....|+.|++++|.|+.||.|..  +|++|+|++|.|+.|+.  ...+|+.|+|++|.|+++|.
T Consensus        85 L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~  157 (571)
T 3cvr_A           85 LEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE  157 (571)
T ss_dssp             EECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC
T ss_pred             EECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC
Confidence            344444444333   344567888888888888876443  88888888888888777  34688888888888888876


Q ss_pred             CCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcC-------CeeeCCCccCC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRL-------SCNLYNSKSHS  505 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~L-------scnlIs~n~~~  505 (507)
                        .+++|+.|+|++|.|+.||. ...+|+.|+|++|.|+.++.+..  +|       ....+++|.+.
T Consensus       158 --~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          158 --LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             --CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC
T ss_pred             --cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce
Confidence              56788888888888888887 44688888888888866554443  55       66666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.28  E-value=4.4e-12  Score=119.56  Aligned_cols=125  Identities=13%  Similarity=0.140  Sum_probs=100.4

Q ss_pred             hhhccccCCcEEEccCCC-CCCCC--CCCCCCCCCEEEccC-CCCCCcCCCCCC--CCCcEEECCCCCCCCCcCCCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIG-LKAIP--TISHFSSLRSVNLSN-NFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~-Lt~LP--~L~~L~sL~~LdLS~-N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~L~~L~s  450 (507)
                      .+..++ .|+.|++++|. ++.++  .|..+++|++|+|++ |.|+.+++..|.  .+|+.|+|++|.|+.+|.+..+++
T Consensus        50 ~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~  128 (239)
T 2xwt_C           50 AFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS  128 (239)
T ss_dssp             TTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCB
T ss_pred             HccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccc
Confidence            455554 47999999997 98887  688999999999998 999999987764  789999999999999988888888


Q ss_pred             cc---EEEccCC-CCcccCCCCCC---CCC-EEEcCCCCCCCC-CCCCCCCcCCeeeCCCc
Q 010557          451 LR---VLDLSYN-RIFRIGHGNIL---SKP-VFWLSFKLFEFL-TIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       451 L~---~LdLS~N-~Is~IP~~~f~---sL~-~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n  502 (507)
                      |+   .|+|++| .|+.++...|.   .|+ .|++++|.|..+ .......+|....++.|
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            88   9999999 99999886554   677 899999998543 22223356766666666

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.28  E-value=2.8e-11  Score=121.80  Aligned_cols=107  Identities=22%  Similarity=0.272  Sum_probs=69.2

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s  450 (507)
                      .+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  ++|+.|+|++|.|+.++.  +..+++
T Consensus        88 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  166 (390)
T 3o6n_A           88 AFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  166 (390)
T ss_dssp             TTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred             hccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence            344443 3567777777776554  466677777777777777766665543  567777777777766532  666677


Q ss_pred             ccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCC
Q 010557          451 LRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEF  484 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~  484 (507)
                      |+.|+|++|.|+.++...++.|+.|++++|.+..
T Consensus       167 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             CCEEECCCCcCCccccccccccceeecccccccc
Confidence            7777777777776666666667777776666644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.28  E-value=3.5e-11  Score=125.54  Aligned_cols=139  Identities=18%  Similarity=0.194  Sum_probs=111.2

Q ss_pred             cccccCCccccccch----hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCC
Q 010557          362 RSEINLSEEILHANS----VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSR  436 (507)
Q Consensus       362 ~ldLsLn~~il~~~s----~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~  436 (507)
                      +..|.++.+.+....    .+..++ .|++|++++|.|+.+| .+..+++|++|+|++|.|+.++...+ .+|+.|+|++
T Consensus       363 L~~L~Ls~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~-~~L~~L~Ls~  440 (549)
T 2z81_A          363 LQTLVLSQNHLRSMQKTGEILLTLK-NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-QTLEVLDVSN  440 (549)
T ss_dssp             CCEEECTTSCCCCHHHHHHHGGGCT-TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC-TTCSEEECCS
T ss_pred             CcEEEccCCcccccccchhhhhcCC-CCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc-CCceEEECCC
Confidence            334555555554332    355554 5799999999999999 88899999999999999998876544 6899999999


Q ss_pred             CCCCCCcCCCCCCCccEEEccCCCCcccCCC-CCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557          437 NKINTIEGLREMTRLRVLDLSYNRIFRIGHG-NILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       437 NkLs~Lp~L~~L~sL~~LdLS~N~Is~IP~~-~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~  504 (507)
                      |+|++++  ..+++|+.|+|++|+|+.||.. .++.|+.|+|++|.|..+  ..+..+.+|....++.|+.
T Consensus       441 N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          441 NNLDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             SCCSCCC--CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             CChhhhc--ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            9999874  5788999999999999999873 466999999999999554  3478888888888888865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.27  E-value=7.2e-11  Score=123.61  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC-CCcc
Q 010557          385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN-RIFR  463 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N-~Is~  463 (507)
                      |++|++++|.|+.++ +..+++|++|+|++|.|+.++-.. .++|+.|+|++|.|++++ +..+++|+.|+|++| .+..
T Consensus        87 L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~~~~-l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~  163 (457)
T 3bz5_A           87 LTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVSQ-NPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITK  163 (457)
T ss_dssp             CSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCCCTT-CTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCC
T ss_pred             CCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeecCCC-CCcCCEEECCCCccceec-cccCCcCCEEECCCCCcccc
Confidence            455555555555443 445555555555555555543111 145555555555555542 445555555555555 3444


Q ss_pred             cCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          464 IGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       464 IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      ++...+..|+.|++++|.|..++ +..+..|....++.|.+.
T Consensus       164 ~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          164 LDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCC
Confidence            44445556666666666665554 556666666666555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.26  E-value=7.1e-12  Score=118.12  Aligned_cols=129  Identities=13%  Similarity=0.095  Sum_probs=107.0

Q ss_pred             hhhccccCCcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCCCCCc---EEECCCC-CCCCCcC--CCC
Q 010557          377 VIRSLNSSSAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRN-KINTIEG--LRE  447 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~---~LdLS~N-kLs~Lp~--L~~  447 (507)
                      .+..++ .|++|++++ |.|+.++  .|..+++|++|+|++|.|+.++......+|+   .|+|++| .|+.++.  |..
T Consensus        75 ~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           75 SFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             TEESCT-TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             HcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccc
Confidence            456665 589999999 9999887  6889999999999999999988722226677   9999999 9999864  899


Q ss_pred             CCCcc-EEEccCCCCcccCCCCCC--CCCEEEcCCCC-CCCC--CCCCCC-CcCCeeeCCCccCCC
Q 010557          448 MTRLR-VLDLSYNRIFRIGHGNIL--SKPVFWLSFKL-FEFL--TIIPNC-KRLSCNLYNSKSHSA  506 (507)
Q Consensus       448 L~sL~-~LdLS~N~Is~IP~~~f~--sL~~L~LS~N~-Ls~L--~~L~nL-~~LscnlIs~n~~~~  506 (507)
                      +++|+ .|+|++|.|+.||...|.  +|+.|+|++|. +..+  ..+..+ .+|....++.|.+..
T Consensus       154 l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             hhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            99999 999999999999987665  67889999995 8553  456777 888888888876654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.26  E-value=2e-11  Score=127.53  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~s  450 (507)
                      .+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|+.++.  +..+++
T Consensus        47 ~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  125 (570)
T 2z63_A           47 SFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (570)
T ss_dssp             TTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred             HhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence            344443 3566666666666554  466666666666666666666655544  566666666666666543  666666


Q ss_pred             ccEEEccCCCCccc--CC--CCCCCCCEEEcCCCCCC
Q 010557          451 LRVLDLSYNRIFRI--GH--GNILSKPVFWLSFKLFE  483 (507)
Q Consensus       451 L~~LdLS~N~Is~I--P~--~~f~sL~~L~LS~N~Ls  483 (507)
                      |+.|+|++|.|+.+  |.  ..+.+|+.|++++|.+.
T Consensus       126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             ccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            66666666666643  32  23456666666666663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.26  E-value=2.6e-11  Score=128.29  Aligned_cols=119  Identities=17%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             hhhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMT  449 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~  449 (507)
                      ..+..++ .|++|++++|.|+.+ | .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++  .+..++
T Consensus        51 ~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           51 TTFSRLI-NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TTSTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             hHhccCc-cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            3455554 357777777777755 3 577777777777777777776665554  66777777777777752  366777


Q ss_pred             CccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCCC--CCCCCCCcCC
Q 010557          450 RLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEFL--TIIPNCKRLS  495 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L--~~L~nL~~Ls  495 (507)
                      +|+.|+|++|.|+.++.   ..+.+|+.|+|++|.+..+  ..++.+..|.
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            77777777777776532   1244667777777776432  2234444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.25  E-value=3.2e-11  Score=124.90  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCccc
Q 010557          385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI  464 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is~I  464 (507)
                      |+.|++++|.++.++.+..+++|+.|+|++|.+..+++....++|+.|+|++|.+++++.+..+++|+.|+|++|.|+.+
T Consensus       267 L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          267 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence            45555555555555445555555555555555555544221245555555555555554455555555566655555554


Q ss_pred             CC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCc
Q 010557          465 GH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       465 P~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n  502 (507)
                      +. ..+++|+.|++++|.+..+..+..++.|....++++
T Consensus       347 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          347 SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  385 (466)
T ss_dssp             GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred             hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence            32 334455566666666544333555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.25  E-value=3.1e-11  Score=129.45  Aligned_cols=125  Identities=17%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CC-----
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LR-----  446 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~-----  446 (507)
                      +..++ .|++|+|++|.|+.+|  .|..+++|++|+|++|.|+.+++..+.  ++|+.|+|++|.|+.++.  +.     
T Consensus       119 ~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L  197 (597)
T 3oja_B          119 FQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA  197 (597)
T ss_dssp             TTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEE
T ss_pred             HcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhh
Confidence            44443 3577777777777666  356777777777777777777665554  567777777777765420  11     


Q ss_pred             -----------CCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCcc
Q 010557          447 -----------EMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       447 -----------~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~  503 (507)
                                 ....|+.|+|++|.|+.++...+.+|+.|+|++|.|..+..+..+++|....+++|.
T Consensus       198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc
Confidence                       122344444444444444444444555555555555444445555555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.25  E-value=5.7e-11  Score=119.60  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=98.1

Q ss_pred             cccCCccccc--cchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557          364 EINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN  437 (507)
Q Consensus       364 dLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N  437 (507)
                      .|.++.+.+.  ....+..++ .|++|++++|.|+.+|  .|..+++|++|+|++|.|..+++..+.  ++|+.|+|++|
T Consensus        97 ~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A           97 KLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             EEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            3444444343  234456664 4799999999999998  378999999999999999999887665  78999999999


Q ss_pred             CCCCCc--CCCC----------------CCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeC
Q 010557          438 KINTIE--GLRE----------------MTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLY  499 (507)
Q Consensus       438 kLs~Lp--~L~~----------------L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlI  499 (507)
                      .|+.++  .+..                ...|+.|++++|.|+.++...+..|+.|+|++|.+..+..+..+++|....+
T Consensus       176 ~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  255 (390)
T 3o6n_A          176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL  255 (390)
T ss_dssp             CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEEC
Confidence            998753  1222                2346666666666666666556667777777776655555555666665555


Q ss_pred             CCccC
Q 010557          500 NSKSH  504 (507)
Q Consensus       500 s~n~~  504 (507)
                      ++|.+
T Consensus       256 s~n~l  260 (390)
T 3o6n_A          256 SYNEL  260 (390)
T ss_dssp             CSSCC
T ss_pred             CCCcC
Confidence            55543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.25  E-value=2.8e-11  Score=116.17  Aligned_cols=127  Identities=23%  Similarity=0.293  Sum_probs=78.2

Q ss_pred             hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcC-CCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIP-TGSMP--KGLHTLNLSRNKINTIE--GLREMTR  450 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ip-p~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s  450 (507)
                      +..++ .|+.|++++|.++.++  .+..+++|++|+|++|.|+.+. +..+.  .+|+.|+|++|+|+.++  .+..+..
T Consensus        96 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A           96 FSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             TTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             hcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence            44443 3566666666666554  4666666666666666666543 32222  56666666666666643  2333333


Q ss_pred             cc----EEEccCCCCcccCCCCCC--CCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccCC
Q 010557          451 LR----VLDLSYNRIFRIGHGNIL--SKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       451 L~----~LdLS~N~Is~IP~~~f~--sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~  505 (507)
                      |+    .|+|++|.|+.++...+.  +|+.|+|++|.|..+.  .+..+.+|....++.|++.
T Consensus       175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            33    666666666666665444  6778899999885543  3577888888888887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.25  E-value=4.9e-11  Score=117.50  Aligned_cols=144  Identities=17%  Similarity=0.198  Sum_probs=104.7

Q ss_pred             ccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC-C
Q 010557          361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK-I  439 (507)
Q Consensus       361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk-L  439 (507)
                      .+..|.++++.+.....+..++ .|++|++++|.++.++.|..+++|++|+|++|.|..+++.....+|+.|++++|. +
T Consensus        67 ~L~~L~l~~n~i~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~  145 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNL  145 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTC
T ss_pred             CccEEEccCCccccchhhhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCc
Confidence            3444555555555555566554 4688888888888877788888888888888888887763333778888888884 4


Q ss_pred             CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      ..++.+..+++|+.|++++|.+..++. ..++.|+.|++++|.+..+..+..+..|....++.+.+.
T Consensus       146 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          146 SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence            446668888888888888888887654 556688888888888877666777777777777766543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.25  E-value=2.4e-11  Score=125.31  Aligned_cols=140  Identities=19%  Similarity=0.207  Sum_probs=111.4

Q ss_pred             cccccCCccccc--cchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECC
Q 010557          362 RSEINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS  435 (507)
Q Consensus       362 ~ldLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS  435 (507)
                      +..|.++.+.+.  ....+..++ .|+.|+|++|.|+.+|  .|..+++|++|+|++|.|..+.+..|.  .+|+.|+|+
T Consensus        58 L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~  136 (477)
T 2id5_A           58 LEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG  136 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred             CCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence            334455544443  235566665 4799999999999998  589999999999999999999887765  789999999


Q ss_pred             CCCCCCCc--CCCCCCCccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCc
Q 010557          436 RNKINTIE--GLREMTRLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       436 ~NkLs~Lp--~L~~L~sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n  502 (507)
                      +|.|+.+.  .|..+++|+.|+|++|.|+.++.   ..+.+|+.|+|++|.+..+  ..+..+.+|....++.+
T Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            99999874  48999999999999999998885   4667999999999998443  35667777776666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.25  E-value=3.1e-11  Score=131.18  Aligned_cols=132  Identities=17%  Similarity=0.204  Sum_probs=103.7

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE  443 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp  443 (507)
                      .|.++++.+..+..   ++..|+.|++++|.|+.+|.  .+++|+.|+|++|.|+.++.  ...+|+.|+|++|.|+.+|
T Consensus       104 ~L~Ls~N~l~~ip~---l~~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp  176 (571)
T 3cvr_A          104 YLDACDNRLSTLPE---LPASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLP  176 (571)
T ss_dssp             EEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC
T ss_pred             EEEccCCCCCCcch---hhcCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcc
Confidence            34444444444333   44478999999999999887  68999999999999999887  3468999999999999988


Q ss_pred             CCCCCCCccEEEccCCCCcccCCCCCCCC-------CEEEcCCCCCCCC-CCCCCCCcCCeeeCCCccCC
Q 010557          444 GLREMTRLRVLDLSYNRIFRIGHGNILSK-------PVFWLSFKLFEFL-TIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       444 ~L~~L~sL~~LdLS~N~Is~IP~~~f~sL-------~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n~~~  505 (507)
                      .|.  ++|+.|+|++|.|+.||. ...+|       +.|+|++|.|..+ ..+..+++|....+++|.+.
T Consensus       177 ~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          177 ELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             hhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence            754  899999999999999988 44477       8899999999554 45777888888888888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.24  E-value=4.3e-11  Score=117.80  Aligned_cols=139  Identities=20%  Similarity=0.250  Sum_probs=102.7

Q ss_pred             cccccCCccccccchhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC
Q 010557          362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN  437 (507)
Q Consensus       362 ~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N  437 (507)
                      +..+.+..+.+....  ..++..|+.|++++|.|+.++  .|..+++|+.|+|++|.|+.+++..+.  .+|+.|+|++|
T Consensus       173 L~~L~l~~n~l~~l~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          173 LSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CCEEECCSSCCCSCC--SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             cCEEECCCCccccCC--ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            334444444443222  123356889999999998764  788999999999999999998886665  78999999999


Q ss_pred             CCCCCcC-CCCCCCccEEEccCCCCcccCCCCC---------CCCCEEEcCCCCCCC----CCCCCCCCcCCeeeCCCc
Q 010557          438 KINTIEG-LREMTRLRVLDLSYNRIFRIGHGNI---------LSKPVFWLSFKLFEF----LTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       438 kLs~Lp~-L~~L~sL~~LdLS~N~Is~IP~~~f---------~sL~~L~LS~N~Ls~----L~~L~nL~~LscnlIs~n  502 (507)
                      .|+.+|. +..+++|+.|+|++|+|+.++...|         ..|+.|++++|.+..    +..+..+..|....+++|
T Consensus       251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            9998875 8888999999999999998887555         466788999998842    345666677777766665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.24  E-value=6.4e-12  Score=123.69  Aligned_cols=121  Identities=14%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             CcEEEccCCCCCC---CC---CCCCCCCCCEEEccCCCCCCcCC---CCC--CCCCcEEECCCCCCCCCc---CCCCCCC
Q 010557          385 SAVAHIAGIGLKA---IP---TISHFSSLRSVNLSNNFIVHIPT---GSM--PKGLHTLNLSRNKINTIE---GLREMTR  450 (507)
Q Consensus       385 Lt~L~LS~N~Lt~---LP---~L~~L~sL~~LdLS~N~Is~Ipp---~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~s  450 (507)
                      |+.|++++|.+..   ++   .+..+++|++|+|++|.|+.++.   ..+  .++|+.|+|++|.|+++.   .+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            5666666666542   12   23566666666666666664322   111  157888888888887743   3666788


Q ss_pred             ccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          451 LRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      |+.|+|++|.|+.||...+.+|+.|+|++|.|..++.+..+++|....+++|++.
T Consensus       255 L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          255 LNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred             CCEEECCCCccChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence            8888888888888887766788888888888866666888888888888888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.24  E-value=7.3e-11  Score=116.17  Aligned_cols=105  Identities=24%  Similarity=0.381  Sum_probs=66.7

Q ss_pred             hhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCc
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRL  451 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL  451 (507)
                      .+..++ .|+.|++++|.++.+| .+.  ++|+.|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++  .+..+++|
T Consensus       166 ~~~~l~-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          166 AFQGMK-KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             GGGGCT-TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             hccCCC-CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence            344443 3567777777777666 332  6677777777777766554443  56777777777777653  26666777


Q ss_pred             cEEEccCCCCcccCCC--CCCCCCEEEcCCCCCCC
Q 010557          452 RVLDLSYNRIFRIGHG--NILSKPVFWLSFKLFEF  484 (507)
Q Consensus       452 ~~LdLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~  484 (507)
                      +.|+|++|.|+.+|..  .++.|+.|+|++|.|..
T Consensus       243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence            7777777777766653  34466777777777644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.24  E-value=5.2e-11  Score=121.33  Aligned_cols=121  Identities=24%  Similarity=0.330  Sum_probs=68.9

Q ss_pred             CCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEcc
Q 010557          384 SSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLS  457 (507)
Q Consensus       384 sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS  457 (507)
                      .|+.|++++|.++.+ | .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++  .|..+++|+.|+|+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            356666666666643 3 456666666666666666666554443  55666666666666542  25566666666666


Q ss_pred             CCCCcccCCC---CCCCCCEEEcCCCCCCCCC--CCCCCCcCCeeeCCCccC
Q 010557          458 YNRIFRIGHG---NILSKPVFWLSFKLFEFLT--IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       458 ~N~Is~IP~~---~f~sL~~L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~  504 (507)
                      +|+|+.++..   .+++|+.|+|++|.|..+.  .+..+++|....+++|++
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            6666655432   2345566666666664432  245555555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.24  E-value=3.2e-11  Score=117.25  Aligned_cols=141  Identities=17%  Similarity=0.218  Sum_probs=102.5

Q ss_pred             ccccCCccccccc---hhhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCC-cCCCCCC--CCCcEEEC
Q 010557          363 SEINLSEEILHAN---SVIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVH-IPTGSMP--KGLHTLNL  434 (507)
Q Consensus       363 ldLsLn~~il~~~---s~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~-Ipp~sf~--~sL~~LdL  434 (507)
                      ..|.+..+.+...   ..+..++ .|+.|++++|.+..+ + .|..+++|++|+|++|.|.. +.+..+.  .+|+.|+|
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CEEECCCCcccccccchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            3344544444432   2455554 478999999988855 4 68888999999999998886 3343333  78999999


Q ss_pred             CCCCCCCC-c-CCCCCCCccEEEccCCCCcccCC---CCCCCCCEEEcCCCCCCC--CCCCCCC-CcCCeeeCCCccC
Q 010557          435 SRNKINTI-E-GLREMTRLRVLDLSYNRIFRIGH---GNILSKPVFWLSFKLFEF--LTIIPNC-KRLSCNLYNSKSH  504 (507)
Q Consensus       435 S~NkLs~L-p-~L~~L~sL~~LdLS~N~Is~IP~---~~f~sL~~L~LS~N~Ls~--L~~L~nL-~~LscnlIs~n~~  504 (507)
                      ++|.|+.+ + .+..+++|+.|+|++|.|+.++.   ..+++|+.|+|++|.|..  +..+..+ .+|....+++|++
T Consensus       183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            99999886 3 38888999999999999988776   345688899999998843  4556666 4788777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.23  E-value=5.5e-11  Score=127.47  Aligned_cols=108  Identities=23%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s  450 (507)
                      .+..++ .|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|.|++++  .|..+++
T Consensus        94 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B           94 AFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             TTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence            444443 4677777777777665  567777777777777777777776553  67777777777777764  2777777


Q ss_pred             ccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCC
Q 010557          451 LRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L  485 (507)
                      |+.|+|++|.|+.++.+.++.|+.|++++|.+..+
T Consensus       173 L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             CCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             CcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence            77777777777777777777777777777776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.23  E-value=9.3e-11  Score=115.72  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=62.7

Q ss_pred             CcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC--C-c-CCCCCCCccEEEcc
Q 010557          385 SAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT--I-E-GLREMTRLRVLDLS  457 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~--L-p-~L~~L~sL~~LdLS  457 (507)
                      |++|++++|.|+.+| .+.  ++|++|+|++|.|+.+++..+.  .+|+.|+|++|.++.  + + .+..+ +|+.|+|+
T Consensus       104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            455555555555555 322  4555555555555555554332  455555555555542  1 1 13333 45555555


Q ss_pred             CCCCcccCCCCCCCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccC
Q 010557          458 YNRIFRIGHGNILSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       458 ~N~Is~IP~~~f~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~  504 (507)
                      +|.|+.+|...+..|+.|+|++|.|..+  ..+..+.+|....++.|.+
T Consensus       181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l  229 (332)
T 2ft3_A          181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI  229 (332)
T ss_dssp             SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred             CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            5555555555555667777777776432  3455666666655555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.23  E-value=1.9e-11  Score=121.69  Aligned_cols=127  Identities=17%  Similarity=0.237  Sum_probs=94.4

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC---CCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG---LREMT  449 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~---L~~L~  449 (507)
                      .+..++ .|+.|++++|.|+.++  .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++.   +..++
T Consensus        71 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~  149 (353)
T 2z80_A           71 DLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT  149 (353)
T ss_dssp             TTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred             HhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence            355554 4688888888888764  588888888888888888888775433  678888888888888754   77888


Q ss_pred             CccEEEccCC-CCcccCCCCC---CCCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccC
Q 010557          450 RLRVLDLSYN-RIFRIGHGNI---LSKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       450 sL~~LdLS~N-~Is~IP~~~f---~sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~  504 (507)
                      +|+.|+|++| .++.++...|   ..|+.|++++|.+..  +..+..+++|....++.|.+
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            8888888888 5777766544   356678888888743  46677777777777766654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=2.2e-11  Score=108.76  Aligned_cols=107  Identities=19%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             hhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCCCCc---CCCCCCCcc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIE---GLREMTRLR  452 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~sL~  452 (507)
                      +..++ .|+.|++++|.|+.++.|..+++|++|+|++|.|+.+.+..+  .++|+.|+|++|.|+.++   .+..+++|+
T Consensus        45 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           45 TAEFV-NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             CGGGG-GCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HHhCC-CCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            35554 479999999999988889999999999999999999655443  279999999999999975   488999999


Q ss_pred             EEEccCCCCcccCC------CCCCCCCEEEcCCCCCCCC
Q 010557          453 VLDLSYNRIFRIGH------GNILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       453 ~LdLS~N~Is~IP~------~~f~sL~~L~LS~N~Ls~L  485 (507)
                      .|+|++|.|+.++.      ..++.|+.|+++.|.+..+
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99999999998876      4577999999999988544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.22  E-value=1.5e-11  Score=121.33  Aligned_cols=121  Identities=17%  Similarity=0.150  Sum_probs=91.7

Q ss_pred             CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCCCCCcCCCCCCCccEEEccC
Q 010557          384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTIEGLREMTRLRVLDLSY  458 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~  458 (507)
                      .|+.|++++|.|+.++  .+..+++|++|+|++|.|+.+++..+.   .+|+.|+|++|.|+.++....+++|+.|+|++
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS  200 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC
Confidence            4678888888888764  677788888888888888887665442   67888888888888877766688888888888


Q ss_pred             CCCcccCCC--CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557          459 NRIFRIGHG--NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       459 N~Is~IP~~--~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~  504 (507)
                      |+|+.++..  .+++|+.|+|++|.|.. +..+..+.+|....++.|.+
T Consensus       201 N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             SCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred             CcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence            888887663  34578888888888844 45567777787777777765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.22  E-value=1.6e-11  Score=122.59  Aligned_cols=140  Identities=17%  Similarity=0.189  Sum_probs=109.3

Q ss_pred             cccCCccccc-cchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCC
Q 010557          364 EINLSEEILH-ANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKIN  440 (507)
Q Consensus       364 dLsLn~~il~-~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs  440 (507)
                      .|++.++.+. ....+..++ .|++|+|++|.|+.+| .|..+++|++|+|++|.|+.++..... .+|+.|+|++|.+.
T Consensus        85 ~L~L~~n~l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~  163 (328)
T 4fcg_A           85 ALELRSVPLPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL  163 (328)
T ss_dssp             EEEEESSCCSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC
T ss_pred             EEEccCCCchhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc
Confidence            3444443333 233355554 5799999999999999 899999999999999999988764333 79999999997655


Q ss_pred             C-CcC-CC---------CCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557          441 T-IEG-LR---------EMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       441 ~-Lp~-L~---------~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~  504 (507)
                      + +|. +.         .+++|+.|+|++|.|+.+|.  ..+.+|+.|+|++|.|.. +..+..+++|....+++|..
T Consensus       164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT
T ss_pred             cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc
Confidence            4 654 43         49999999999999998886  456799999999999954 45688888888888887643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.22  E-value=8.3e-11  Score=114.34  Aligned_cols=106  Identities=23%  Similarity=0.368  Sum_probs=79.3

Q ss_pred             hhhccccCCcEEEccCCCCCC--CC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT  449 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~--LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~  449 (507)
                      .+..++ .|+.|++++|.++.  +| .|..+++|++|+|++|.|+.+++..+.  ++|+.|+|++|.|+.++.  +..++
T Consensus       145 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          145 IFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             TTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             hcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence            344443 46888888888874  56 788888888888888888888776554  678888888888888753  77788


Q ss_pred             CccEEEccCCCCcccCCC---CC-CCCCEEEcCCCCCC
Q 010557          450 RLRVLDLSYNRIFRIGHG---NI-LSKPVFWLSFKLFE  483 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~~---~f-~sL~~L~LS~N~Ls  483 (507)
                      +|+.|+|++|.|+.++..   .+ .+|+.|+|++|.|.
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            888888888888876543   23 36778888888773

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.21  E-value=5.5e-11  Score=127.81  Aligned_cols=127  Identities=18%  Similarity=0.168  Sum_probs=91.5

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTR  450 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~s  450 (507)
                      .+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|++|+|++|.|+.++  .|..+++
T Consensus        44 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           44 NFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             HHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            455554 4688888888888664  577888888888888888888876554  78888888888888875  3788888


Q ss_pred             ccEEEccCCCCcccCCC---CCCCCCEEEcCCCCCCCCCC----CCCCCcCCeeeCCCccC
Q 010557          451 LRVLDLSYNRIFRIGHG---NILSKPVFWLSFKLFEFLTI----IPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~---~f~sL~~L~LS~N~Ls~L~~----L~nL~~LscnlIs~n~~  504 (507)
                      |++|+|++|.++.++..   .+.+|+.|+|++|.+..+..    ...+..|....++.|.+
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            88888888888876654   34577888888888754321    22345666666666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.21  E-value=1.7e-10  Score=120.64  Aligned_cols=133  Identities=19%  Similarity=0.196  Sum_probs=105.6

Q ss_pred             ccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC
Q 010557          365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG  444 (507)
Q Consensus       365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~  444 (507)
                      +.++++.+..   +..++..|+.|++++|.++.+|.+  +++|+.|++++|.|+.++..  +.+|+.|+|++|.|+++|.
T Consensus        76 L~l~~~~l~~---lp~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp~  148 (454)
T 1jl5_A           76 LELNNLGLSS---LPELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPE  148 (454)
T ss_dssp             EECTTSCCSC---CCSCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCC
T ss_pred             EEecCCcccc---CCCCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCcc
Confidence            4444444433   223567789999999999988843  47899999999999987653  2689999999999999988


Q ss_pred             CCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      +..+++|+.|+|++|+|+.+|.. +.+|+.|++++|.+..++.++++++|....++.|.+.
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~-~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDL-PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cCCCCCCCEEECCCCcCcccCCC-cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence            99999999999999999988753 4689999999999877777888888888777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.21  E-value=1.7e-11  Score=122.07  Aligned_cols=142  Identities=15%  Similarity=0.148  Sum_probs=101.7

Q ss_pred             ccccCCcccccc--chhhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCC-CCCC--CCCcEEECC
Q 010557          363 SEINLSEEILHA--NSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPT-GSMP--KGLHTLNLS  435 (507)
Q Consensus       363 ldLsLn~~il~~--~s~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp-~sf~--~sL~~LdLS  435 (507)
                      ..|.++++.+..  ...+..++ .|++|++++|.|+.++  .|..+++|++|+|++|.|+.++. ..+.  ++|+.|+|+
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~  157 (353)
T 2z80_A           79 QALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG  157 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred             CEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC
Confidence            334444444432  23455554 4799999999999888  38889999999999999998887 4443  789999999


Q ss_pred             CC-CCCCCc--CCCCCCCccEEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557          436 RN-KINTIE--GLREMTRLRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       436 ~N-kLs~Lp--~L~~L~sL~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~  505 (507)
                      +| .+..++  .+..+++|+.|+|++|.|+.+....+   .+|+.|++++|.+..+..  +..+.+|....++.|.+.
T Consensus       158 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            98 577764  38889999999999999998765444   466778999998855432  223555666555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.20  E-value=7.4e-11  Score=122.16  Aligned_cols=145  Identities=18%  Similarity=0.230  Sum_probs=119.8

Q ss_pred             cccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCC
Q 010557          360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI  439 (507)
Q Consensus       360 ~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkL  439 (507)
                      ..+..|.+.++.+.....+..++ .|+.|++++|.++.++.+..+++|+.|+|++|.|+.+++.....+|+.|+|++|.+
T Consensus       221 ~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l  299 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL  299 (466)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             CCCCEEECCCCCcccchhhhcCC-CCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc
Confidence            34445666666666666677665 47999999999998877889999999999999999988733337899999999999


Q ss_pred             CCCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          440 NTIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       440 s~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      ++++.+..+++|+.|+|++|.|+.++. ..+++|+.|++++|.+..+..+.++.+|....+++|.+.
T Consensus       300 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          300 EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             SCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             cCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccC
Confidence            998778899999999999999997654 567799999999999988888889999998888888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.20  E-value=4.6e-11  Score=126.42  Aligned_cols=104  Identities=27%  Similarity=0.336  Sum_probs=82.7

Q ss_pred             ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557          380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLD  455 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld  455 (507)
                      .++..++.|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|++|+|++|.|+.+|.. .+++|+.|+
T Consensus        49 ~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~  127 (562)
T 3a79_B           49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLD  127 (562)
T ss_dssp             TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEE
T ss_pred             CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEE
Confidence            34567888888888888776  788888888888888888888777665  7888888888888888766 788888888


Q ss_pred             ccCCCCcccCC----CCCCCCCEEEcCCCCCCC
Q 010557          456 LSYNRIFRIGH----GNILSKPVFWLSFKLFEF  484 (507)
Q Consensus       456 LS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~  484 (507)
                      |++|+|+.++.    ..+.+|+.|+|++|.|..
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            88888887653    345678888888888754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.19  E-value=3.3e-10  Score=118.60  Aligned_cols=139  Identities=17%  Similarity=0.123  Sum_probs=110.7

Q ss_pred             cccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCC-CC
Q 010557          362 RSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK-IN  440 (507)
Q Consensus       362 ~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~Nk-Ls  440 (507)
                      +..|.++.+.+.... +..++ .|++|++++|.|+.++ +..+++|++|+|++|.|+.++-..+ .+|+.|++++|. +.
T Consensus        87 L~~L~Ls~N~l~~~~-~~~l~-~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l-~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A           87 LTYLACDSNKLTNLD-VTPLT-KLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHN-TQLTELDCHLNKKIT  162 (457)
T ss_dssp             CSEEECCSSCCSCCC-CTTCT-TCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTC-TTCCEEECTTCSCCC
T ss_pred             CCEEECcCCCCceee-cCCCC-cCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccC-CcCCEEECCCCCccc
Confidence            334455555555443 56664 4799999999999887 8899999999999999999853322 689999999994 55


Q ss_pred             CCcCCCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          441 TIEGLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       441 ~Lp~L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .+ .+..+++|+.|+|++|+|+.+|...++.|+.|++++|.|..+ .++.+.+|....++.|.+..
T Consensus       163 ~~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          163 KL-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC
T ss_pred             cc-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc
Confidence            55 688899999999999999999877888999999999999777 48888888888888887654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.18  E-value=1.1e-10  Score=119.06  Aligned_cols=98  Identities=24%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             CcEEEccCCCCC-CCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC--CcC--CCCCCCccEEE
Q 010557          385 SAVAHIAGIGLK-AIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT--IEG--LREMTRLRVLD  455 (507)
Q Consensus       385 Lt~L~LS~N~Lt-~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~--Lp~--L~~L~sL~~Ld  455 (507)
                      |++|++++|.+. .++  .|..+++|++|+|++|.|+.+.+..+.  .+|+.|+|++|.|++  +..  +..+++|+.|+
T Consensus        56 L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  135 (455)
T 3v47_A           56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV  135 (455)
T ss_dssp             CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEE
T ss_pred             ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEE
Confidence            455555555554 332  455555555555555555555444333  455555555555554  222  55555555555


Q ss_pred             ccCCCCcccCCC----CCCCCCEEEcCCCCC
Q 010557          456 LSYNRIFRIGHG----NILSKPVFWLSFKLF  482 (507)
Q Consensus       456 LS~N~Is~IP~~----~f~sL~~L~LS~N~L  482 (507)
                      |++|.|+.+...    .++.|+.|+|++|.+
T Consensus       136 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             CCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            555555544221    234555555555555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.18  E-value=1.1e-10  Score=121.76  Aligned_cols=126  Identities=17%  Similarity=0.134  Sum_probs=99.6

Q ss_pred             hhccccCCcEEEccCCCCCCCC----CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCcc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP----TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLR  452 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP----~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~  452 (507)
                      +..++ .|+.|++++|.|+.++    .+..+++|++|+|++|.|+.++..... .+|+.|+|++|.|+.++... .++|+
T Consensus       357 ~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~  434 (549)
T 2z81_A          357 KGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLE  434 (549)
T ss_dssp             TTSST-TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCS
T ss_pred             hhccc-cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCce
Confidence            34443 4788999999998775    378889999999999999988775443 78999999999988876521 26789


Q ss_pred             EEEccCCCCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          453 VLDLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       453 ~LdLS~N~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .|+|++|+|+.++ ..++.|+.|+|++|.|..++....+++|....+++|.+..
T Consensus       435 ~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          435 VLDVSNNNLDSFS-LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             EEECCSSCCSCCC-CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCC
T ss_pred             EEECCCCChhhhc-ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCC
Confidence            9999999998876 4677999999999999777767778888888888886653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.18  E-value=2.5e-10  Score=122.65  Aligned_cols=98  Identities=18%  Similarity=0.314  Sum_probs=44.0

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCC--------CC--CCCcEEECCCCCCCCCcC--CCCCCC
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGS--------MP--KGLHTLNLSRNKINTIEG--LREMTR  450 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~s--------f~--~sL~~LdLS~NkLs~Lp~--L~~L~s  450 (507)
                      |+.|++++|.|+.++  .|..+++|++|+|++|.|+.++...        +.  .+|+.|+|++|.|+.+|.  |..+++
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE  561 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence            344444444444443  2444444444444444444432211        11  344445555554444432  444455


Q ss_pred             ccEEEccCCCCcccCCCCC---CCCCEEEcCCCCC
Q 010557          451 LRVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLF  482 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~L  482 (507)
                      |+.|+|++|+|+.+|...|   .+|+.|+|++|.|
T Consensus       562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            5555555555554444332   2444455555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.17  E-value=1.9e-10  Score=113.47  Aligned_cols=122  Identities=16%  Similarity=0.212  Sum_probs=100.9

Q ss_pred             cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEE
Q 010557          381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLD  455 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~Ld  455 (507)
                      ++..++.|++++|.|+.++  .|..+++|++|+|++|.|+.+.+..+.  .+|+.|+|++|.|+.+|. +.  ++|+.|+
T Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR  129 (332)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred             CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence            4567899999999999885  799999999999999999999876665  799999999999999875 33  8999999


Q ss_pred             ccCCCCcccCCC---CCCCCCEEEcCCCCCC----CCCCCCCCCcCCeeeCCCccCC
Q 010557          456 LSYNRIFRIGHG---NILSKPVFWLSFKLFE----FLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       456 LS~N~Is~IP~~---~f~sL~~L~LS~N~Ls----~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      |++|.|+.++..   .+++|+.|++++|.+.    .+..+..+ +|....++.+.+.
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999999999874   4668899999999984    24555555 6666666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.17  E-value=8.7e-11  Score=124.32  Aligned_cols=125  Identities=18%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             hhhccccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC--CcC-CCCCC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT--IEG-LREMT  449 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~--Lp~-L~~L~  449 (507)
                      .+..++ .|++|++++|.|+.+ | .|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|.|+.  +|. +..++
T Consensus        75 ~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  153 (606)
T 3vq2_A           75 AWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT  153 (606)
T ss_dssp             TTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred             Hhhchh-hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence            445553 367777777777766 4 677777777777777777777755544  677777777777775  343 77777


Q ss_pred             CccEEEccCCCCcccCCCCCC---C----CCEEEcCCCCCCCC-CCCCCCCcCCeeeCCCc
Q 010557          450 RLRVLDLSYNRIFRIGHGNIL---S----KPVFWLSFKLFEFL-TIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~~~f~---s----L~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n  502 (507)
                      +|+.|+|++|.|+.++...|.   .    +..|+++.|.+..+ .......+|....++.+
T Consensus       154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n  214 (606)
T 3vq2_A          154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN  214 (606)
T ss_dssp             TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred             CCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence            777777777777777665443   2    33677777777432 22222334555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=5.2e-11  Score=128.72  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=91.4

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCc
Q 010557          384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is  462 (507)
                      .|+.|+|++|.|+.+|.|..+++|+.|+|++|.|+.+|..... .+|+.|+|++|.|+++|.+..|++|+.|+|++|+|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence            4789999999999999999999999999999999988764333 899999999999999999999999999999999999


Q ss_pred             cc--CC--CCCCCCCEEEcCCCCCCCC
Q 010557          463 RI--GH--GNILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       463 ~I--P~--~~f~sL~~L~LS~N~Ls~L  485 (507)
                      .+  |.  ..+++|+.|+|++|.|..+
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            88  44  4577999999999999543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.17  E-value=2.6e-11  Score=119.79  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=81.5

Q ss_pred             chhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC-cCCCCCC
Q 010557          375 NSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-EGLREMT  449 (507)
Q Consensus       375 ~s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L-p~L~~L~  449 (507)
                      ...+..++..|+.|++++|.|+ .+| .|..+. |++|+|++|.|+.+.+..+.  .+|+.|+|++|.|++. +.+..++
T Consensus       166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~  244 (313)
T 1ogq_A          166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK  244 (313)
T ss_dssp             CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred             CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccC
Confidence            3445555545667777777766 455 555555 77777777777666554443  5677777777777753 4466677


Q ss_pred             CccEEEccCCCCc-ccCC--CCCCCCCEEEcCCCCCC-CCCCCCCCCcCCeeeCCCcc
Q 010557          450 RLRVLDLSYNRIF-RIGH--GNILSKPVFWLSFKLFE-FLTIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       450 sL~~LdLS~N~Is-~IP~--~~f~sL~~L~LS~N~Ls-~L~~L~nL~~LscnlIs~n~  503 (507)
                      +|+.|+|++|.|+ .+|.  ..++.|+.|+|++|.|. .++....+++|....+..|+
T Consensus       245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            7777777777777 3443  34557777777777773 44445666666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.17  E-value=3.7e-11  Score=126.63  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=86.7

Q ss_pred             CCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCCCCCcCCCCCCCccEEEccC
Q 010557          384 SSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTIEGLREMTRLRVLDLSY  458 (507)
Q Consensus       384 sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~  458 (507)
                      .|+.|++++|.|+.+ | .|..+++|++|+|++|.|+.+++..+.   ++|+.|+|++|.|++++.+..+++|+.|+|++
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS  200 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC
Confidence            467778888887765 3 677778888888888888776654442   67888888888887777666677888888888


Q ss_pred             CCCcccCCC--CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557          459 NRIFRIGHG--NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       459 N~Is~IP~~--~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~  504 (507)
                      |.|+.+|..  .+++|+.|+|++|.|.. +..+..+.+|....+++|.+
T Consensus       201 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             SCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             CCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence            888877653  34577778888887744 44566677777777766654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.17  E-value=9.2e-11  Score=124.10  Aligned_cols=118  Identities=23%  Similarity=0.284  Sum_probs=103.9

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC-cC-CCCCCCccEEEccCCC
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-EG-LREMTRLRVLDLSYNR  460 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L-p~-L~~L~sL~~LdLS~N~  460 (507)
                      +.+++++|+|+.+| .+.  ++|+.|+|++|.|+.+++..|.  ++|+.|+|++|.|+++ +. |..+++|+.|+|++|.
T Consensus        34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence            78999999999999 554  8999999999999999986665  7999999999999997 44 9999999999999999


Q ss_pred             CcccCCCCCCCCCEEEcCCCCCCCC---CCCCCCCcCCeeeCCCccCC
Q 010557          461 IFRIGHGNILSKPVFWLSFKLFEFL---TIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       461 Is~IP~~~f~sL~~L~LS~N~Ls~L---~~L~nL~~LscnlIs~n~~~  505 (507)
                      |+.||...+.+|+.|+|++|.|..+   ..++++++|....++.|.+.
T Consensus       112 l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            9999988888999999999999553   56888888888777777553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.16  E-value=4.6e-11  Score=118.04  Aligned_cols=140  Identities=18%  Similarity=0.092  Sum_probs=103.5

Q ss_pred             cccCCccccc--cchhhhccccCCcEEEccCCCCC-CCC-CCCCCC-CCCEEEccCCCCCCcCCCCCC-CCCcEEECCCC
Q 010557          364 EINLSEEILH--ANSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFS-SLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRN  437 (507)
Q Consensus       364 dLsLn~~il~--~~s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~-sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~N  437 (507)
                      .|.++.+.+.  ....+..++ .|++|++++|.|+ .+| .|..++ +|++|+|++|.|+...+..+. ..|+.|+|++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence            3444443333  334556664 4688888888888 777 788887 888888888888866665554 34888999999


Q ss_pred             CCCCC-cC-CCCCCCccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCC--CCCCCCCCCcCCeeeCCCccC
Q 010557          438 KINTI-EG-LREMTRLRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFE--FLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       438 kLs~L-p~-L~~L~sL~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls--~L~~L~nL~~LscnlIs~n~~  504 (507)
                      .|+++ +. +..+++|+.|+|++|.|+..+.  ..+++|+.|+|++|.|.  .+..+..+.+|....+++|.+
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            88864 33 8889999999999999985433  45568999999999994  466788888888888887754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.16  E-value=7.9e-11  Score=122.97  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=52.3

Q ss_pred             cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEc
Q 010557          383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDL  456 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdL  456 (507)
                      ..++.|++++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|++|+|++|.|+.++  .|..+++|+.|+|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            34444444444444433  344444444444444444444443332  34444444444444432  1444444444444


Q ss_pred             cCCCCcccCC---CCCCCCCEEEcCCCCCCC---CCCCCCCCcCCeeeCCCc
Q 010557          457 SYNRIFRIGH---GNILSKPVFWLSFKLFEF---LTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       457 S~N~Is~IP~---~~f~sL~~L~LS~N~Ls~---L~~L~nL~~LscnlIs~n  502 (507)
                      ++|.|+.++.   +.+.+|+.|+|++|.+..   +..++++++|....++.+
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            4444444433   222344444444444421   233444444444444333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.15  E-value=4.3e-11  Score=124.56  Aligned_cols=121  Identities=25%  Similarity=0.244  Sum_probs=96.1

Q ss_pred             cccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcCCCCCCCccEEEc
Q 010557          381 LNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEGLREMTRLRVLDL  456 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdL  456 (507)
                      ++..+++|++++|.|+.++  .|..+++|++|+|++|.|+.+.+..|.  .+|++|+|++|+|+.+|.. .+++|+.|+|
T Consensus        19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L   97 (520)
T 2z7x_B           19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL   97 (520)
T ss_dssp             CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred             ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence            4567899999999999876  789999999999999999998776654  7899999999999998776 8899999999


Q ss_pred             cCCCCcccC--C--CCCCCCCEEEcCCCCCCCCCCCCCCCcC--CeeeCCCcc
Q 010557          457 SYNRIFRIG--H--GNILSKPVFWLSFKLFEFLTIIPNCKRL--SCNLYNSKS  503 (507)
Q Consensus       457 S~N~Is~IP--~--~~f~sL~~L~LS~N~Ls~L~~L~nL~~L--scnlIs~n~  503 (507)
                      ++|.|+.++  .  +.+.+|+.|+|++|.|.. ..+..+..|  ....++.+.
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECT
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch-hhccccccceeeEEEeeccc
Confidence            999998753  2  456789999999999854 234444454  554444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=8.3e-11  Score=116.57  Aligned_cols=94  Identities=16%  Similarity=0.234  Sum_probs=48.5

Q ss_pred             EccCC-CCCCCCCCCCCCCCCEEEccC-CCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCc
Q 010557          389 HIAGI-GLKAIPTISHFSSLRSVNLSN-NFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       389 ~LS~N-~Lt~LP~L~~L~sL~~LdLS~-N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is  462 (507)
                      +++++ +|+.||.|..+++|+.|+|++ |.|+.+++..|.  .+|+.|+|++|+|++++.  |..|++|+.|+|++|+|+
T Consensus        14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence            44444 555555555555555555553 555555544333  455555555555555432  455555555555555555


Q ss_pred             ccCCCCCC--CCCEEEcCCCCC
Q 010557          463 RIGHGNIL--SKPVFWLSFKLF  482 (507)
Q Consensus       463 ~IP~~~f~--sL~~L~LS~N~L  482 (507)
                      .+|...|.  .|+.|+|.+|.|
T Consensus        94 ~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           94 SLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             CCCSTTTCSCCCCEEECCSSCC
T ss_pred             eeCHHHcccCCceEEEeeCCCc
Confidence            55544433  245555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.15  E-value=2.3e-11  Score=119.94  Aligned_cols=122  Identities=19%  Similarity=0.189  Sum_probs=89.1

Q ss_pred             cCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CC-CCCCCccEEEcc
Q 010557          383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GL-REMTRLRVLDLS  457 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L-~~L~sL~~LdLS  457 (507)
                      ..|+.|++++|.|+.++. ..+++|+.|+|++|.|+.+++..+.  .+|+.|+|++|.|+.++  .+ ..+++|+.|+|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            346777777777776651 2357788888888888888776554  67888888888888753  24 467888888888


Q ss_pred             CCCCcccCCC-CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557          458 YNRIFRIGHG-NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       458 ~N~Is~IP~~-~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~  505 (507)
                      +|.|+.++.. .+++|+.|+|++|.|.. +..+..+.+|....+++|.+.
T Consensus       178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             TSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence            8888887653 35688888888888844 355777777887777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.15  E-value=5.1e-11  Score=117.24  Aligned_cols=122  Identities=20%  Similarity=0.128  Sum_probs=85.1

Q ss_pred             cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCc---CC-CCC--CCCCcEEECCCCCCCCCcC-----CCCCC
Q 010557          383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHI---PT-GSM--PKGLHTLNLSRNKINTIEG-----LREMT  449 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~I---pp-~sf--~~sL~~LdLS~NkLs~Lp~-----L~~L~  449 (507)
                      ..|++|++++|.|+.++  .|..+++|++|+|++|.+.+.   +. ..+  ..+|+.|+|++|.|+.++.     +..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            56788888888888665  688888888888888886542   21 111  1678888888888886432     45678


Q ss_pred             CccEEEccCCCCcccCC-C---CCCCCCEEEcCCCCCCCC-CCCCCCCcCCeeeCCCccCCC
Q 010557          450 RLRVLDLSYNRIFRIGH-G---NILSKPVFWLSFKLFEFL-TIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~-~---~f~sL~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n~~~~  506 (507)
                      +|+.|+|++|+|+.++. .   .+.+|+.|+|++|.|..+ ..+.  .+|....+++|.+..
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCS
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCC
Confidence            88888888888887442 2   245788888888888544 3343  667777777776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.15  E-value=1.5e-10  Score=125.49  Aligned_cols=128  Identities=17%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             hhhccccCCcEEEccCCCCCCCC-CCCCCC--CCCEEEccCCCCCCcCCCCCC---------CCCcEEECCCCCCCCCcC
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP-TISHFS--SLRSVNLSNNFIVHIPTGSMP---------KGLHTLNLSRNKINTIEG  444 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~--sL~~LdLS~N~Is~Ipp~sf~---------~sL~~LdLS~NkLs~Lp~  444 (507)
                      .+..++..|+.|++++|.|+.+| .+..+.  +|+.|+|++|.|..+.+..+.         .+|+.|+|++|.|+.+|.
T Consensus       371 ~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK  450 (636)
T ss_dssp             TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred             hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence            34555443677777777777777 444433  667777777766664443221         356666666666666654


Q ss_pred             --CCCCCCccEEEccCCCCcccCCCCCC----------CCCEEEcCCCCCCC-CCCCC--CCCcCCeeeCCCccC
Q 010557          445 --LREMTRLRVLDLSYNRIFRIGHGNIL----------SKPVFWLSFKLFEF-LTIIP--NCKRLSCNLYNSKSH  504 (507)
Q Consensus       445 --L~~L~sL~~LdLS~N~Is~IP~~~f~----------sL~~L~LS~N~Ls~-L~~L~--nL~~LscnlIs~n~~  504 (507)
                        +..+++|+.|+|++|+|+.||...+.          .|+.|+|++|.|.. +..+.  .+.+|....+++|.+
T Consensus       451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l  525 (636)
T 4eco_A          451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF  525 (636)
T ss_dssp             HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence              44566666666666666666655443          56666666666633 23333  555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=2e-10  Score=104.34  Aligned_cols=86  Identities=17%  Similarity=0.279  Sum_probs=77.2

Q ss_pred             ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557          380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV  453 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~  453 (507)
                      .++..++.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|+|+.++.  |..+++|+.
T Consensus        27 ~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence            35677899999999999885  799999999999999999999998764  799999999999999864  899999999


Q ss_pred             EEccCCCCcccC
Q 010557          454 LDLSYNRIFRIG  465 (507)
Q Consensus       454 LdLS~N~Is~IP  465 (507)
                      |+|++|.++...
T Consensus       107 L~L~~N~~~c~c  118 (170)
T 3g39_A          107 IWLLNNPWDCAC  118 (170)
T ss_dssp             EECCSSCBCTTB
T ss_pred             EEeCCCCCCCCc
Confidence            999999987543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.14  E-value=1.5e-10  Score=122.55  Aligned_cols=98  Identities=19%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             CcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC--cCCCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI--EGLREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L--p~L~~L~sL~~LdLS~  458 (507)
                      |++|++++|.|+.+ | .|..+++|++|+|++|.|+.+.+..+.  .+|+.|+|++|.|+.+  +.+..+++|+.|+|++
T Consensus        83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  162 (606)
T 3t6q_A           83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN  162 (606)
T ss_dssp             CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred             cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence            45555555555543 2 455555555555555555555443332  4555555555555554  3344455555555555


Q ss_pred             CCCcccCC---CCCCCCC--EEEcCCCCC
Q 010557          459 NRIFRIGH---GNILSKP--VFWLSFKLF  482 (507)
Q Consensus       459 N~Is~IP~---~~f~sL~--~L~LS~N~L  482 (507)
                      |.|+.++.   ..+..|+  .|++++|.+
T Consensus       163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          163 NAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             SCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             CcccccChhhhhhhcccceeEEecCCCcc
Confidence            55555433   2333444  455555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.13  E-value=1.6e-10  Score=120.24  Aligned_cols=128  Identities=19%  Similarity=0.191  Sum_probs=89.0

Q ss_pred             chhhhccccCCcEEEccCCCCCCC---C-CCCCCCCCCEEEccCCCCCC-cCCCCCC--CCCcEEECCCCCCCCC-cC-C
Q 010557          375 NSVIRSLNSSSAVAHIAGIGLKAI---P-TISHFSSLRSVNLSNNFIVH-IPTGSMP--KGLHTLNLSRNKINTI-EG-L  445 (507)
Q Consensus       375 ~s~l~~Lp~sLt~L~LS~N~Lt~L---P-~L~~L~sL~~LdLS~N~Is~-Ipp~sf~--~sL~~LdLS~NkLs~L-p~-L  445 (507)
                      ...+..++ .|+.|++++|.|+.+   | .|..+++|++|+|++|.|.. ++...+.  .+|+.|+|++|.|++. +. +
T Consensus       341 ~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          341 FENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             TTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred             hhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence            34445554 467888888888754   3 47778888888888888887 6655443  6788888888887652 22 3


Q ss_pred             CCCCCccEEEccCCCCcccCCC--CCCCCCEEEcCCCCCCCCCC--CCCCCcCCeeeCCCccCC
Q 010557          446 REMTRLRVLDLSYNRIFRIGHG--NILSKPVFWLSFKLFEFLTI--IPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       446 ~~L~sL~~LdLS~N~Is~IP~~--~f~sL~~L~LS~N~Ls~L~~--L~nL~~LscnlIs~n~~~  505 (507)
                      .  ++|+.|+|++|+|+.||..  .+++|+.|+|++|.|..++.  +..+.+|....++.|++.
T Consensus       420 ~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            2  6788888888888877763  45678888888888855432  677777777777777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.13  E-value=7.1e-11  Score=115.91  Aligned_cols=122  Identities=20%  Similarity=0.149  Sum_probs=97.5

Q ss_pred             cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCC---cCCCCC---CCCCcEEECCCCCCCCCcC-----CCCCC
Q 010557          383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVH---IPTGSM---PKGLHTLNLSRNKINTIEG-----LREMT  449 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~---Ipp~sf---~~sL~~LdLS~NkLs~Lp~-----L~~L~  449 (507)
                      ..|++|++++|.|+.++  .|..+++|++|+|++|.+..   ++...+   .++|+.|+|++|.|+.++.     +..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            45899999999999776  78999999999999999875   433322   1689999999999998754     46789


Q ss_pred             CccEEEccCCCCccc-CC--CCC---CCCCEEEcCCCCCCCC-CCCCCCCcCCeeeCCCccCCC
Q 010557          450 RLRVLDLSYNRIFRI-GH--GNI---LSKPVFWLSFKLFEFL-TIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       450 sL~~LdLS~N~Is~I-P~--~~f---~sL~~L~LS~N~Ls~L-~~L~nL~~LscnlIs~n~~~~  506 (507)
                      +|+.|+|++|+|+.+ |.  ..+   ++|+.|+|++|.|..+ ..+  ..+|....+++|.+..
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCS
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCC
Confidence            999999999999987 53  233   5899999999999654 333  3678888888877654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=2.8e-10  Score=104.05  Aligned_cols=87  Identities=17%  Similarity=0.271  Sum_probs=78.1

Q ss_pred             ccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccE
Q 010557          380 SLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRV  453 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~  453 (507)
                      .++..|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..|.  .+|+.|+|++|+|+.++.  |..+++|+.
T Consensus        30 ~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence            35677999999999999885  799999999999999999999998764  799999999999999864  899999999


Q ss_pred             EEccCCCCcccCC
Q 010557          454 LDLSYNRIFRIGH  466 (507)
Q Consensus       454 LdLS~N~Is~IP~  466 (507)
                      |+|++|.|...+.
T Consensus       110 L~L~~N~~~c~~~  122 (174)
T 2r9u_A          110 IYLYNNPWDCECR  122 (174)
T ss_dssp             EECCSSCBCTTBG
T ss_pred             EEeCCCCcccccc
Confidence            9999999986553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.12  E-value=5.9e-10  Score=122.12  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=40.8

Q ss_pred             cCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCc
Q 010557          383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is  462 (507)
                      ..|++|+|++|.|+.+|.  .+++|++|+|++|.|+.++.  ...+|+.|+|++|+|+.+|..  +++|+.|+|++|.|+
T Consensus        81 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A           81 PELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLA  154 (622)
T ss_dssp             TTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred             CCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCC
Confidence            445666666666666554  44566666666666665554  224555555555555554431  244444444444444


Q ss_pred             ccC
Q 010557          463 RIG  465 (507)
Q Consensus       463 ~IP  465 (507)
                      .+|
T Consensus       155 ~l~  157 (622)
T 3g06_A          155 SLP  157 (622)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.11  E-value=5.2e-10  Score=122.55  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=96.4

Q ss_pred             ccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC
Q 010557          380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN  459 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N  459 (507)
                      ..+..|+.|++++|.|+.+|.+  +++|+.|+|++|.|+.++..  ..+|+.|+|++|.|+.+|  ..+++|+.|+|++|
T Consensus       178 ~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          178 MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLPSELKELMVSGN  251 (622)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSS
T ss_pred             ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCCCcCcEEECCCC
Confidence            3446678888888888888742  47888888888888888754  268999999999999887  55688999999999


Q ss_pred             CCcccCCCCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557          460 RIFRIGHGNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       460 ~Is~IP~~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~  505 (507)
                      .|+.||. .+.+|+.|+|++|.|.. +..+.++++|....+++|.+.
T Consensus       252 ~L~~lp~-~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          252 RLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCSCCCC-CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCCcCCc-ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence            9999988 67789999999999854 456788888888888888754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.11  E-value=7.6e-11  Score=130.73  Aligned_cols=100  Identities=16%  Similarity=0.227  Sum_probs=77.5

Q ss_pred             CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC-CCCCCCccEEEccCCC
Q 010557          384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNR  460 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~N~  460 (507)
                      .|+.|+|++|.|..|| .+..+++|++|+|++|.|+.|+..... .+|+.|+|++|.|+.||. |..|++|+.|+|++|.
T Consensus       225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC
T ss_pred             CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC
Confidence            4688888888888887 677888888888888888877654322 678888888888888765 7888888888888888


Q ss_pred             CcccCCC--CCCCCCEEEcCCCCCC
Q 010557          461 IFRIGHG--NILSKPVFWLSFKLFE  483 (507)
Q Consensus       461 Is~IP~~--~f~sL~~L~LS~N~Ls  483 (507)
                      |+.||..  .+.+|+.|+|++|.|.
T Consensus       305 l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          305 VTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCccChhhhcCCCccEEeCCCCccC
Confidence            8888763  4457788888888874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.11  E-value=4.3e-11  Score=126.08  Aligned_cols=121  Identities=19%  Similarity=0.176  Sum_probs=84.4

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCC-c-CCC-CCCCccEEEccC
Q 010557          384 SSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTI-E-GLR-EMTRLRVLDLSY  458 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~L-p-~L~-~L~sL~~LdLS~  458 (507)
                      .|+.|++++|.|+.++. ..+++|+.|+|++|.|+.+++..+.  ++|+.|+|++|.|+++ + .+. .+++|+.|+|++
T Consensus       100 ~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          100 SIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             TCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            45666666666665551 2356788888888888877665553  6788888888888874 3 243 678888888888


Q ss_pred             CCCcccCCC-CCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccCC
Q 010557          459 NRIFRIGHG-NILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       459 N~Is~IP~~-~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~~  505 (507)
                      |.|+.++.. .++.|+.|+|++|.|.. ++.+..+.+|....+++|.+.
T Consensus       179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             SCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             CccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence            888877653 35688888888888844 355667777777777777553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.10  E-value=2.4e-10  Score=123.88  Aligned_cols=120  Identities=24%  Similarity=0.294  Sum_probs=64.1

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-C--------CCcEEECCCCCCCCCcC-CC--CCCC
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-K--------GLHTLNLSRNKINTIEG-LR--EMTR  450 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~--------sL~~LdLS~NkLs~Lp~-L~--~L~s  450 (507)
                      |+.|++++|.|+.+|  .+..+++|++|+|++|.|+.++...+. .        +|+.|+|++|+|+.+|. +.  .+++
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~  514 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY  514 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred             CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence            455666666666555  234456666666666666655554443 1        56666666666665543 33  5666


Q ss_pred             ccEEEccCCCCcccCC--CCCCCCCEEEcCC------CCC--CCCCCCCCCCcCCeeeCCCccC
Q 010557          451 LRVLDLSYNRIFRIGH--GNILSKPVFWLSF------KLF--EFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~--~~f~sL~~L~LS~------N~L--s~L~~L~nL~~LscnlIs~n~~  504 (507)
                      |+.|+|++|+|+.+|.  ..+..|+.|+|++      |.+  ..+..+.++++|....+++|.+
T Consensus       515 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             cCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            6666666666665554  2334555555532      333  2234444555555555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.09  E-value=1e-10  Score=102.48  Aligned_cols=100  Identities=20%  Similarity=0.233  Sum_probs=84.3

Q ss_pred             hhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCCCCCCc---CCCCCCCcc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNKINTIE---GLREMTRLR  452 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~NkLs~Lp---~L~~L~sL~  452 (507)
                      +..++ .|+.|++++|.|+.++.+..+++|++|+|++|.|+...+..+  ..+|+.|+|++|.|+.++   .+..+++|+
T Consensus        38 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           38 TDEFE-ELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             CTTCT-TCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             HhhcC-CCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            34554 579999999999988889999999999999999999544333  278999999999999963   489999999


Q ss_pred             EEEccCCCCcccCC------CCCCCCCEEEcC
Q 010557          453 VLDLSYNRIFRIGH------GNILSKPVFWLS  478 (507)
Q Consensus       453 ~LdLS~N~Is~IP~------~~f~sL~~L~LS  478 (507)
                      .|+|++|.|+.++.      ..+++|+.|+++
T Consensus       117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99999999998876      346688888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.08  E-value=1.5e-10  Score=127.87  Aligned_cols=128  Identities=20%  Similarity=0.256  Sum_probs=90.3

Q ss_pred             hhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCC-cCCCC----------------------------
Q 010557          376 SVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVH-IPTGS----------------------------  424 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~-Ipp~s----------------------------  424 (507)
                      ..+..++ .|++|++++|.++ .+| .+..+++|++|+|++|.+++ +|...                            
T Consensus       508 ~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          508 KWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             GGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             hHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            3455554 4677777777777 566 67777777888877777763 22110                            


Q ss_pred             -----------------------------------------CC--CCCcEEECCCCCCCC-CcC-CCCCCCccEEEccCC
Q 010557          425 -----------------------------------------MP--KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLSYN  459 (507)
Q Consensus       425 -----------------------------------------f~--~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS~N  459 (507)
                                                               +.  ..|+.|+|++|+|++ +|. ++.|+.|+.|+|++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                     11  357788888888886 554 888888888888888


Q ss_pred             CCc-ccCC--CCCCCCCEEEcCCCCC--CCCCCCCCCCcCCeeeCCCccC
Q 010557          460 RIF-RIGH--GNILSKPVFWLSFKLF--EFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       460 ~Is-~IP~--~~f~sL~~L~LS~N~L--s~L~~L~nL~~LscnlIs~n~~  504 (507)
                      +|+ .||.  +.+..|+.|+|++|++  ..+..+.+++.|....+++|.+
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            888 4664  4566888888888888  4567778888888877777754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=2.7e-10  Score=123.18  Aligned_cols=112  Identities=18%  Similarity=0.191  Sum_probs=92.5

Q ss_pred             ccCCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCC-
Q 010557          365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-  442 (507)
Q Consensus       365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~L-  442 (507)
                      |.++++.+..++.+..++ .|+.|+|++|.|+.+| .|+.+++|+.|+|++|.|+.++.....++|+.|+|++|.|+++ 
T Consensus       446 L~Ls~n~l~~lp~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~  524 (567)
T 1dce_A          446 LHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA  524 (567)
T ss_dssp             EECTTSCCSSCCCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred             EEecCCCCCCCcCccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCC
Confidence            556666666555577765 5899999999999999 8999999999999999999987322237999999999999998 


Q ss_pred             -cC-CCCCCCccEEEccCCCCcccCCCC------CCCCCEEEc
Q 010557          443 -EG-LREMTRLRVLDLSYNRIFRIGHGN------ILSKPVFWL  477 (507)
Q Consensus       443 -p~-L~~L~sL~~LdLS~N~Is~IP~~~------f~sL~~L~L  477 (507)
                       |. +..|++|+.|+|++|.|+.+|...      +++|+.|++
T Consensus       525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             54 999999999999999999987632      567776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.07  E-value=1.5e-10  Score=128.46  Aligned_cols=117  Identities=19%  Similarity=0.218  Sum_probs=87.5

Q ss_pred             ccCCccccc-cchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCC
Q 010557          365 INLSEEILH-ANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINT  441 (507)
Q Consensus       365 LsLn~~il~-~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~  441 (507)
                      |.|+.+.+. ....+..++ .|+.|+|++|.|+.|| .|..|++|++|+|++|.|+.||..... .+|+.|+|++|.|+.
T Consensus       229 L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  307 (727)
T 4b8c_D          229 LDLSNLQIFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT  307 (727)
T ss_dssp             EECTTSCCSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC
T ss_pred             EECCCCCCCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc
Confidence            344443333 223445554 4799999999999998 799999999999999999988665433 789999999999999


Q ss_pred             CcC-CCCCCCccEEEccCCCCcccCCCCCCC--C--CEEEcCCCCC
Q 010557          442 IEG-LREMTRLRVLDLSYNRIFRIGHGNILS--K--PVFWLSFKLF  482 (507)
Q Consensus       442 Lp~-L~~L~sL~~LdLS~N~Is~IP~~~f~s--L--~~L~LS~N~L  482 (507)
                      ||. |..|++|+.|+|++|.|+.++...+..  +  ..|+|+.|.+
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence            875 899999999999999998655433321  1  2356777777

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=8.6e-10  Score=125.41  Aligned_cols=127  Identities=18%  Similarity=0.076  Sum_probs=60.7

Q ss_pred             hhccccCCcEEEccCCCCCCCC-CCCCCCC--CCEEEccCCCCCCcCCCCC------C-CCCcEEECCCCCCCCCcC--C
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP-TISHFSS--LRSVNLSNNFIVHIPTGSM------P-KGLHTLNLSRNKINTIEG--L  445 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~s--L~~LdLS~N~Is~Ipp~sf------~-~sL~~LdLS~NkLs~Lp~--L  445 (507)
                      +..++..|+.|+|++|.|+.+| .+..+..  |+.|+|++|.|.+.++...      . .+|+.|+|++|.|+.+|.  +
T Consensus       614 l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~  693 (876)
T 4ecn_A          614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF  693 (876)
T ss_dssp             SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred             HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence            3333332455555555555555 3333322  4444554444443322111      0 245555555555555443  3


Q ss_pred             CCCCCccEEEccCCCCcccCCCCCC----------CCCEEEcCCCCCCC-CCCCC--CCCcCCeeeCCCccC
Q 010557          446 REMTRLRVLDLSYNRIFRIGHGNIL----------SKPVFWLSFKLFEF-LTIIP--NCKRLSCNLYNSKSH  504 (507)
Q Consensus       446 ~~L~sL~~LdLS~N~Is~IP~~~f~----------sL~~L~LS~N~Ls~-L~~L~--nL~~LscnlIs~n~~  504 (507)
                      ..+++|+.|+|++|+|+.||...+.          +|+.|+|++|.|.. +..+.  .+++|....+++|.+
T Consensus       694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L  765 (876)
T 4ecn_A          694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF  765 (876)
T ss_dssp             HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC
Confidence            3455666666666666655554433          45556666665533 23333  455555555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.06  E-value=4.5e-10  Score=125.34  Aligned_cols=98  Identities=19%  Similarity=0.209  Sum_probs=53.1

Q ss_pred             CcEEEccCCC-CCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-C-cC--CCCCCCccEEE
Q 010557          385 SAVAHIAGIG-LKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-I-EG--LREMTRLRVLD  455 (507)
Q Consensus       385 Lt~L~LS~N~-Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-L-p~--L~~L~sL~~Ld  455 (507)
                      |++|++++|. +..+ | .|..+++|++|+|++|.|..+.+..|.  .+|+.|+|++|.|++ + +.  +..|++|+.|+
T Consensus        50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~  129 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD  129 (844)
T ss_dssp             CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred             CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence            4556666553 2344 2 455666666666666666655554443  456666666666554 2 22  55556666666


Q ss_pred             ccCCCCcccCC----CCCCCCCEEEcCCCCC
Q 010557          456 LSYNRIFRIGH----GNILSKPVFWLSFKLF  482 (507)
Q Consensus       456 LS~N~Is~IP~----~~f~sL~~L~LS~N~L  482 (507)
                      |++|.|+.++.    +.+.+|+.|+|++|.|
T Consensus       130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             EESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            66666554432    2344555566666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=3e-10  Score=129.15  Aligned_cols=119  Identities=13%  Similarity=0.177  Sum_probs=54.3

Q ss_pred             CcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCC-CCC--cCCC------CC--CCCCcEEECCCCCCCCCcC---CCCC
Q 010557          385 SAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNF-IVH--IPTG------SM--PKGLHTLNLSRNKINTIEG---LREM  448 (507)
Q Consensus       385 Lt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~-Is~--Ipp~------sf--~~sL~~LdLS~NkLs~Lp~---L~~L  448 (507)
                      |+.|+|++|.+. .+| .|..|++|+.|+|++|. |++  +|..      .+  .++|+.|+|++|.|+.+|.   +..+
T Consensus       493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L  572 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM  572 (876)
T ss_dssp             CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTC
T ss_pred             CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcC
Confidence            444555554433 344 44445555555555554 443  2210      00  0245555555555555443   4555


Q ss_pred             CCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCC-CCCCCCCCc-CCeeeCCCcc
Q 010557          449 TRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEF-LTIIPNCKR-LSCNLYNSKS  503 (507)
Q Consensus       449 ~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~-L~~L~nL~~-LscnlIs~n~  503 (507)
                      ++|+.|+|++|.|+.||. ..+++|+.|+|++|.|.. +..+..+.+ |....++.|.
T Consensus       573 ~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          573 VKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             TTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence            555555555555555541 122344445555555532 233444444 5554444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.99  E-value=2.8e-09  Score=119.02  Aligned_cols=121  Identities=22%  Similarity=0.278  Sum_probs=65.0

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~  458 (507)
                      |+.|+|++|.|+.++  .|..+++|++|+|++|.|..+.+..|.  ++|+.|+|++|.|+.++.  |..+++|+.|+|++
T Consensus       292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred             CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence            456666666665442  455566666666666666655554443  456666666666655532  55556666666666


Q ss_pred             CCCcccCC------------------CCCCCCCEEEcCCCCCCCCCC---CCCCCcCCeeeCCCccCC
Q 010557          459 NRIFRIGH------------------GNILSKPVFWLSFKLFEFLTI---IPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       459 N~Is~IP~------------------~~f~sL~~L~LS~N~Ls~L~~---L~nL~~LscnlIs~n~~~  505 (507)
                      |.|+.++.                  .....++.|+++.|.|..+..   +..+++|....++.|.+.
T Consensus       372 N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  439 (844)
T 3j0a_A          372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS  439 (844)
T ss_dssp             CCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence            66555443                  012244445555555533321   235566666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.98  E-value=2.3e-12  Score=118.82  Aligned_cols=123  Identities=23%  Similarity=0.313  Sum_probs=99.3

Q ss_pred             hhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEE
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLD  455 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~Ld  455 (507)
                      .+..++ .|+.|++++|.|+.+|.+..+++|++|+|++|.|+.++..... ++|+.|+|++|.|+.++.+..+++|+.|+
T Consensus        43 ~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~  121 (198)
T 1ds9_A           43 TLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred             HHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence            455554 4799999999999999888999999999999999988763322 68999999999999988888889999999


Q ss_pred             ccCCCCcccCC----CCCCCCCEEEcCCCCCCC---------------CCCCCCCCcCCeeeCC
Q 010557          456 LSYNRIFRIGH----GNILSKPVFWLSFKLFEF---------------LTIIPNCKRLSCNLYN  500 (507)
Q Consensus       456 LS~N~Is~IP~----~~f~sL~~L~LS~N~Ls~---------------L~~L~nL~~LscnlIs  500 (507)
                      |++|+|+.++.    ..+++|+.|++++|.+..               +..+.+|..|+.+.+.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~  185 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence            99999997664    567799999999998822               3445666666655544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.98  E-value=8.5e-10  Score=121.89  Aligned_cols=128  Identities=24%  Similarity=0.291  Sum_probs=90.7

Q ss_pred             hhhhccccCCcEEEccCCCCC-CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC-CcC-CCCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT-IEG-LREMT  449 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt-~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~-Lp~-L~~L~  449 (507)
                      ..+..++ .|+.|++++|.++ .+| .|..+++|+.|+|++|.+.+..+..+.  ++|+.|+|++|.|++ +|. +..++
T Consensus       412 ~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          412 PTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             GGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             HHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence            3455553 4678888888877 556 777788888888888888766555443  678888888888875 443 77788


Q ss_pred             CccEEEccCCCCc-ccCC--CCCCCCCEEEcCCCCC--CCCCCCCCCCcCCeeeCCCccC
Q 010557          450 RLRVLDLSYNRIF-RIGH--GNILSKPVFWLSFKLF--EFLTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       450 sL~~LdLS~N~Is-~IP~--~~f~sL~~L~LS~N~L--s~L~~L~nL~~LscnlIs~n~~  504 (507)
                      +|+.|+|++|+|+ .+|.  +.+++|+.|+|++|.+  ..+..+.++++|....++.|.+
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            8888888888887 3443  3456778888888887  3466677777777777776643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.91  E-value=3.2e-09  Score=106.26  Aligned_cols=101  Identities=21%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccC-CCCCCcCCCCCC---CCCcEEECCCCCCCCCcC-CCCCCCccEEEcc
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSN-NFIVHIPTGSMP---KGLHTLNLSRNKINTIEG-LREMTRLRVLDLS  457 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~-N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS  457 (507)
                      |++|++++|.|+.+|  .+.....+..|++.+ |.|..++...|.   ..|+.|+|++|.|+.|+. .....+|+.|+++
T Consensus       106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred             cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence            455555555555444  333344444555432 445555554443   346667777777777653 4445567777775


Q ss_pred             -CCCCcccCCCCCC---CCCEEEcCCCCCCCC
Q 010557          458 -YNRIFRIGHGNIL---SKPVFWLSFKLFEFL  485 (507)
Q Consensus       458 -~N~Is~IP~~~f~---sL~~L~LS~N~Ls~L  485 (507)
                       +|.|+.||.+.|.   +|+.|+|++|.|+.+
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l  217 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRTRIHSL  217 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence             4667777765544   667777777777543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.87  E-value=7.1e-09  Score=103.73  Aligned_cols=117  Identities=18%  Similarity=0.171  Sum_probs=96.3

Q ss_pred             CcEEEccC-CCCCCCC--CCCCCC-CCCEEEccCCCCCCcCCCCCC-CCCcEEECCC-CCCCCCcC--CCCCCCccEEEc
Q 010557          385 SAVAHIAG-IGLKAIP--TISHFS-SLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSR-NKINTIEG--LREMTRLRVLDL  456 (507)
Q Consensus       385 Lt~L~LS~-N~Lt~LP--~L~~L~-sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~-NkLs~Lp~--L~~L~sL~~LdL  456 (507)
                      +..|++.+ |.|..++  .|..+. .|+.|+|++|.|+.|++..|. .+|+.|++++ |.++.||.  |..+++|+.|+|
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence            46777755 6788887  566664 688999999999999998886 6799999974 78999874  899999999999


Q ss_pred             cCCCCcccCCCCCCCCCEEEcCC-CCCCCCCCCCCCCcCCeeeCCC
Q 010557          457 SYNRIFRIGHGNILSKPVFWLSF-KLFEFLTIIPNCKRLSCNLYNS  501 (507)
Q Consensus       457 S~N~Is~IP~~~f~sL~~L~LS~-N~Ls~L~~L~nL~~LscnlIs~  501 (507)
                      ++|+|+.||.+.|.+|+.|.+.. +.+..++.+.++.+|....+.+
T Consensus       210 s~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          210 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             TTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             CCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            99999999999999999997655 4567777788888887766654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.80  E-value=9.7e-09  Score=101.67  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=70.7

Q ss_pred             CCcEEEccC-CCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEc
Q 010557          384 SSAVAHIAG-IGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDL  456 (507)
Q Consensus       384 sLt~L~LS~-N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdL  456 (507)
                      .|+.|+|++ |.|+.++  .|..|++|+.|+|++|.|+.+++..|.  .+|+.|+|++|+|+.+|.  |..+. |+.|+|
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            489999996 9999887  699999999999999999999998765  799999999999999864  55555 999999


Q ss_pred             cCCCCcc
Q 010557          457 SYNRIFR  463 (507)
Q Consensus       457 S~N~Is~  463 (507)
                      .+|.|..
T Consensus       111 ~~N~~~c  117 (347)
T 2ifg_A          111 SGNPLHC  117 (347)
T ss_dssp             CSSCCCC
T ss_pred             eCCCccC
Confidence            9999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.76  E-value=4.5e-11  Score=110.16  Aligned_cols=118  Identities=23%  Similarity=0.311  Sum_probs=95.3

Q ss_pred             CcEEEccCC--CCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEEccC
Q 010557          385 SAVAHIAGI--GLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N--~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~LdLS~  458 (507)
                      +..+.+.++  .|+.+| .|..+++|++|+|++|.|+.++  .+.  .+|+.|+|++|.|+.+|. +..+++|+.|+|++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            344455443  566777 7889999999999999999987  343  899999999999999987 56678999999999


Q ss_pred             CCCcccCC-CCCCCCCEEEcCCCCCCCCC---CCCCCCcCCeeeCCCccC
Q 010557          459 NRIFRIGH-GNILSKPVFWLSFKLFEFLT---IIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       459 N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~---~L~nL~~LscnlIs~n~~  504 (507)
                      |.|+.+|. ..++.|+.|+|++|.|..+.   .+..+++|....++.|++
T Consensus       103 N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            99998873 23458999999999997643   577888888888887754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.64  E-value=3.1e-09  Score=106.68  Aligned_cols=123  Identities=15%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             ccCCcEEEccCCCCCC-----CC-CCCCCC-CCCEEEccCCCCCCcCCCCCC-------CCCcEEECCCCCCCC-----C
Q 010557          382 NSSSAVAHIAGIGLKA-----IP-TISHFS-SLRSVNLSNNFIVHIPTGSMP-------KGLHTLNLSRNKINT-----I  442 (507)
Q Consensus       382 p~sLt~L~LS~N~Lt~-----LP-~L~~L~-sL~~LdLS~N~Is~Ipp~sf~-------~sL~~LdLS~NkLs~-----L  442 (507)
                      +..|++|++++|.|+.     ++ .+..++ +|++|+|++|.|+......+.       .+|+.|+|++|.|+.     +
T Consensus       137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l  216 (362)
T 3goz_A          137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL  216 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence            4456666666666662     22 233333 666666666666655432111       356666666666665     2


Q ss_pred             cC-CCC-CCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCCCC---------CCCCCCCCcCCeeeCCCccC
Q 010557          443 EG-LRE-MTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLFEF---------LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       443 p~-L~~-L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~Ls~---------L~~L~nL~~LscnlIs~n~~  504 (507)
                      +. +.. .++|+.|+|++|.|+.++.       ..+..|+.|+|++|.+..         ...+.++.+|....+++|.+
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            22 333 2466666666666665443       344566666666665311         23445555555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.54  E-value=1.2e-08  Score=102.26  Aligned_cols=144  Identities=16%  Similarity=0.153  Sum_probs=95.6

Q ss_pred             cccccCCcccccc--chhhhcc----ccCCcEEEccCCCCCCCC--C----CCCC-CCCCEEEccCCCCCCcCCCCC---
Q 010557          362 RSEINLSEEILHA--NSVIRSL----NSSSAVAHIAGIGLKAIP--T----ISHF-SSLRSVNLSNNFIVHIPTGSM---  425 (507)
Q Consensus       362 ~ldLsLn~~il~~--~s~l~~L----p~sLt~L~LS~N~Lt~LP--~----L~~L-~sL~~LdLS~N~Is~Ipp~sf---  425 (507)
                      +..|.++++.+..  ...+..+    +..|+.|++++|.|+..+  .    +..+ ++|++|+|++|.|+.+....+   
T Consensus        53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  132 (362)
T 3goz_A           53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA  132 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence            3345555544442  3334333    356889999999988554  2    4445 789999999999888766332   


Q ss_pred             ----CCCCcEEECCCCCCCCC-----c-CCCCCC-CccEEEccCCCCcccCC-------CCC-CCCCEEEcCCCCCCC--
Q 010557          426 ----PKGLHTLNLSRNKINTI-----E-GLREMT-RLRVLDLSYNRIFRIGH-------GNI-LSKPVFWLSFKLFEF--  484 (507)
Q Consensus       426 ----~~sL~~LdLS~NkLs~L-----p-~L~~L~-sL~~LdLS~N~Is~IP~-------~~f-~sL~~L~LS~N~Ls~--  484 (507)
                          ..+|+.|+|++|.|+..     + .+..++ +|+.|+|++|.|+....       ..+ .+|+.|+|++|.|..  
T Consensus       133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence                24799999999988852     2 244554 89999999999886553       123 488999999998844  


Q ss_pred             ----CCCCCC-CCcCCeeeCCCccCC
Q 010557          485 ----LTIIPN-CKRLSCNLYNSKSHS  505 (507)
Q Consensus       485 ----L~~L~n-L~~LscnlIs~n~~~  505 (507)
                          ...+.. .++|....+++|.+.
T Consensus       213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          213 YAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCC
Confidence                223333 346777777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.47  E-value=9.8e-09  Score=103.30  Aligned_cols=144  Identities=17%  Similarity=0.166  Sum_probs=96.7

Q ss_pred             ccccccCCcccccc------chhhhccccCCcEEEccCCCCCCC-----C-CCCCC---------CCCCEEEccCCCCCC
Q 010557          361 RRSEINLSEEILHA------NSVIRSLNSSSAVAHIAGIGLKAI-----P-TISHF---------SSLRSVNLSNNFIVH  419 (507)
Q Consensus       361 ~~ldLsLn~~il~~------~s~l~~Lp~sLt~L~LS~N~Lt~L-----P-~L~~L---------~sL~~LdLS~N~Is~  419 (507)
                      .+..|.++.+.+..      ...+..+ ..|++|+|++|.|+..     + .+..+         ++|++|+|++|.|+.
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            33445555544443      1233444 3578999999988732     2 23333         899999999998872


Q ss_pred             --cCC--CCCC--CCCcEEECCCCCCCC------Cc-CCCCCCCccEEEccCCCCc-----ccCC--CCCCCCCEEEcCC
Q 010557          420 --IPT--GSMP--KGLHTLNLSRNKINT------IE-GLREMTRLRVLDLSYNRIF-----RIGH--GNILSKPVFWLSF  479 (507)
Q Consensus       420 --Ipp--~sf~--~sL~~LdLS~NkLs~------Lp-~L~~L~sL~~LdLS~N~Is-----~IP~--~~f~sL~~L~LS~  479 (507)
                        ++.  ..+.  ++|+.|+|++|.|+.      ++ .+..+++|+.|+|++|.|+     .++.  ..+++|+.|+|++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence              321  1111  589999999999982      35 5888899999999999994     3443  4567899999999


Q ss_pred             CCCCCC------CCC--CCCCcCCeeeCCCccCC
Q 010557          480 KLFEFL------TII--PNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       480 N~Ls~L------~~L--~nL~~LscnlIs~n~~~  505 (507)
                      |.|...      ..+  +.+.+|....+++|.+.
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            988432      333  44777888777777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.44  E-value=1.8e-08  Score=101.29  Aligned_cols=123  Identities=18%  Similarity=0.160  Sum_probs=96.1

Q ss_pred             cCCcEEEccCCCCC--CCC----CCCCCCCCCEEEccCCCCCC-----cCCCCCC--CCCcEEECCCCCCC-----CCcC
Q 010557          383 SSSAVAHIAGIGLK--AIP----TISHFSSLRSVNLSNNFIVH-----IPTGSMP--KGLHTLNLSRNKIN-----TIEG  444 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt--~LP----~L~~L~sL~~LdLS~N~Is~-----Ipp~sf~--~sL~~LdLS~NkLs-----~Lp~  444 (507)
                      ..|+.|++++|.|+  .++    .|..+++|+.|+|++|.|+.     +.+..+.  ++|+.|+|++|.|+     .++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            46899999999997  344    46678999999999999982     2222222  78999999999995     3443


Q ss_pred             -CCCCCCccEEEccCCCCccc-----CC----CCCCCCCEEEcCCCCCCC------CCCC-CCCCcCCeeeCCCccCC
Q 010557          445 -LREMTRLRVLDLSYNRIFRI-----GH----GNILSKPVFWLSFKLFEF------LTII-PNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       445 -L~~L~sL~~LdLS~N~Is~I-----P~----~~f~sL~~L~LS~N~Ls~------L~~L-~nL~~LscnlIs~n~~~  505 (507)
                       +..+++|+.|+|++|.|+..     +.    +.+++|+.|+|++|.|..      +..+ .++++|....+++|.+.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence             88899999999999999864     33    347899999999999954      3344 55788888888888764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.43  E-value=1.6e-08  Score=98.77  Aligned_cols=53  Identities=23%  Similarity=0.124  Sum_probs=23.5

Q ss_pred             CCcEEECCCC--CCCC--CcC-CCCCCCccEEEccCCC-Ccc-cCC--CCCCCCCEEEcCCC
Q 010557          428 GLHTLNLSRN--KINT--IEG-LREMTRLRVLDLSYNR-IFR-IGH--GNILSKPVFWLSFK  480 (507)
Q Consensus       428 sL~~LdLS~N--kLs~--Lp~-L~~L~sL~~LdLS~N~-Is~-IP~--~~f~sL~~L~LS~N  480 (507)
                      +|+.|+|++|  .++.  ++. +..+++|+.|+|++|. ++. .+.  ..+++|+.|+|++|
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            4555555555  2321  222 3345555555555555 332 111  23345555555555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=2e-06  Score=85.11  Aligned_cols=93  Identities=20%  Similarity=0.229  Sum_probs=59.1

Q ss_pred             CCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCcc-EEEccCCCCcccCCCCCC---CCCEE
Q 010557          404 FSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLR-VLDLSYNRIFRIGHGNIL---SKPVF  475 (507)
Q Consensus       404 L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~-~LdLS~N~Is~IP~~~f~---sL~~L  475 (507)
                      +++|+.|+|++|.|+.|+..+|.  .+|+.|+|++| |+.|+.  |..|.+|+ .|+|.. .++.|+...|.   +|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            45677777777777777776665  56777777776 666643  67777777 777766 66667666554   45566


Q ss_pred             EcCCCCCCCC--CCCCCCCcCCeee
Q 010557          476 WLSFKLFEFL--TIIPNCKRLSCNL  498 (507)
Q Consensus       476 ~LS~N~Ls~L--~~L~nL~~Lscnl  498 (507)
                      +++.|.+..+  ..+.+|.+|...+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            6666666443  3455555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.37  E-value=3.3e-08  Score=96.60  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=83.4

Q ss_pred             cCCcEEEccCCCCCC--CC-CCCCCCCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCC-CCCC--CcC-CCCCCCccE
Q 010557          383 SSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRN-KINT--IEG-LREMTRLRV  453 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~--LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~N-kLs~--Lp~-L~~L~sL~~  453 (507)
                      ..|+.|++++|.++.  ++ .+..+++|++|+|++|.++...+..+  .++|+.|+|++| .++.  ++. +..+++|+.
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            357888888888873  56 67788888888888888775333222  267888888888 6774  444 677888888


Q ss_pred             EEccCC-CCcc--cCC--CCCC-CCCEEEcCCCC--CC---CCCCCCCCCcCCeeeCCCcc
Q 010557          454 LDLSYN-RIFR--IGH--GNIL-SKPVFWLSFKL--FE---FLTIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       454 LdLS~N-~Is~--IP~--~~f~-sL~~L~LS~N~--Ls---~L~~L~nL~~LscnlIs~n~  503 (507)
                      |+|++| .|+.  ++.  ..++ +|+.|+|++|.  +.   .+..+..+++|....++.+.
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            888888 8874  332  4566 88888888884  32   12334456666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=1.3e-06  Score=86.39  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=82.5

Q ss_pred             ccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCc-EEECCCCCCCCCcC--CCCCCCccEE
Q 010557          382 NSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLH-TLNLSRNKINTIEG--LREMTRLRVL  454 (507)
Q Consensus       382 p~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~-~LdLS~NkLs~Lp~--L~~L~sL~~L  454 (507)
                      ...|+.|+|++|+++.|+  .|..+.+|+.|+|++| |+.|+..+|.  .+|+ .++|.+ .++.|+.  |..|++|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            356899999999999998  7999999999999998 9999999997  6799 999999 8888853  9999999999


Q ss_pred             EccCCCCcccCCCCCC---CCCEEE
Q 010557          455 DLSYNRIFRIGHGNIL---SKPVFW  476 (507)
Q Consensus       455 dLS~N~Is~IP~~~f~---sL~~L~  476 (507)
                      +|+.|.|+.|+...|.   +|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            9999999999998887   445554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.33  E-value=2.7e-08  Score=101.22  Aligned_cols=78  Identities=22%  Similarity=0.291  Sum_probs=38.1

Q ss_pred             CcEEEccCCCCC-----CCC-CCCCCCCCCEEEccCCCCCCcCCC----CCC---CCCcEEECCCCCCCC-----Cc-CC
Q 010557          385 SAVAHIAGIGLK-----AIP-TISHFSSLRSVNLSNNFIVHIPTG----SMP---KGLHTLNLSRNKINT-----IE-GL  445 (507)
Q Consensus       385 Lt~L~LS~N~Lt-----~LP-~L~~L~sL~~LdLS~N~Is~Ipp~----sf~---~sL~~LdLS~NkLs~-----Lp-~L  445 (507)
                      |+.|++++|.|+     .++ .+..+++|++|+|++|.|......    .+.   .+|+.|+|++|.|+.     ++ .+
T Consensus        30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l  109 (461)
T 1z7x_W           30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL  109 (461)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred             ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence            455555555555     223 344555555555555555442110    011   145555555555553     12 25


Q ss_pred             CCCCCccEEEccCCCCc
Q 010557          446 REMTRLRVLDLSYNRIF  462 (507)
Q Consensus       446 ~~L~sL~~LdLS~N~Is  462 (507)
                      ..+++|+.|+|++|.|+
T Consensus       110 ~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             TSCTTCCEEECCSSBCH
T ss_pred             ccCCceeEEECCCCcCc
Confidence            55555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.26  E-value=1.8e-08  Score=102.58  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             CCcEEEccCCCCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCC-----C--CCCCcEEECCCCCCCCC-----c-C
Q 010557          384 SSAVAHIAGIGLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGS-----M--PKGLHTLNLSRNKINTI-----E-G  444 (507)
Q Consensus       384 sLt~L~LS~N~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~s-----f--~~sL~~LdLS~NkLs~L-----p-~  444 (507)
                      .|++|++++|.|+.     ++ .|..+++|++|+|++|.|.......     +  ..+|+.|+|++|.|+..     + .
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            46777777777762     34 5677777777777777765422211     1  13577777777766652     1 1


Q ss_pred             CCCCCCccEEEccCCCCcccCCC--------CCCCCCEEEcCCCCCC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGHG--------NILSKPVFWLSFKLFE  483 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~~--------~f~sL~~L~LS~N~Ls  483 (507)
                      +..+++|+.|+|++|.|+.....        ..+.|+.|+|++|.+.
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            44556666666666666542211        1235555666665553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.99  E-value=2.5e-07  Score=94.77  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             CCcEEEccCCCCCCCC--CC-----CCCCCCCEEEccCCCCCCcCCCCC------CCCCcEEECCCCCCCCC-----c-C
Q 010557          384 SSAVAHIAGIGLKAIP--TI-----SHFSSLRSVNLSNNFIVHIPTGSM------PKGLHTLNLSRNKINTI-----E-G  444 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L-----~~L~sL~~LdLS~N~Is~Ipp~sf------~~sL~~LdLS~NkLs~L-----p-~  444 (507)
                      .|+.|+|++|.|+...  .|     ...++|+.|+|++|.|+......+      .++|+.|+|++|.|+..     . .
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            4677788888776432  22     345778888888887765222111      15678888888877652     1 2


Q ss_pred             CCCCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~L  482 (507)
                      +..++.|+.|+|++|.|+....       ...+.|+.|+|++|.|
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            5666678888888888775432       1235777888888877

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.92  E-value=2.5e-07  Score=94.81  Aligned_cols=123  Identities=15%  Similarity=0.054  Sum_probs=88.5

Q ss_pred             cCCcEEEccCCCCCCC--C-CCCCCCCCCEEEccCCCCCCcCCCCC-------CCCCcEEECCCCCCCCC-----c-CCC
Q 010557          383 SSSAVAHIAGIGLKAI--P-TISHFSSLRSVNLSNNFIVHIPTGSM-------PKGLHTLNLSRNKINTI-----E-GLR  446 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~L--P-~L~~L~sL~~LdLS~N~Is~Ipp~sf-------~~sL~~LdLS~NkLs~L-----p-~L~  446 (507)
                      ..|+.|+|++|.|+..  . -...+.+|+.|+|++|.|+......+       ..+|+.|+|++|.|+..     . .+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            5688999999998742  2 23456789999999999876433221       15799999999998762     2 257


Q ss_pred             CCCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCCCC------CCCCCCCCcCCeeeCCCccCC
Q 010557          447 EMTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLFEF------LTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       447 ~L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~Ls~------L~~L~nL~~LscnlIs~n~~~  505 (507)
                      .++.|+.|+|++|.|+....       .....|+.|+|++|.|..      ...+..+++|....+++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            78899999999999985431       234589999999999843      233445667777778877653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.66  E-value=5e-06  Score=76.56  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=74.7

Q ss_pred             ccCCcEEEccCC-CCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCC----CC--CCCcEEECCCCCCCC-----C-
Q 010557          382 NSSSAVAHIAGI-GLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGS----MP--KGLHTLNLSRNKINT-----I-  442 (507)
Q Consensus       382 p~sLt~L~LS~N-~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~s----f~--~sL~~LdLS~NkLs~-----L-  442 (507)
                      ...|+.|+|++| .|..     +. .+...++|++|+|++|.|..-....    +.  .+|+.|+|++|.|..     + 
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            345789999999 8873     22 5677889999999999987522111    11  579999999999986     2 


Q ss_pred             cCCCCCCCccEEEc--cCCCCcccCC-------CCCCCCCEEEcCCCCC
Q 010557          443 EGLREMTRLRVLDL--SYNRIFRIGH-------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       443 p~L~~L~sL~~LdL--S~N~Is~IP~-------~~f~sL~~L~LS~N~L  482 (507)
                      ..+...+.|+.|+|  ++|.|+.-..       .....|+.|+|++|.|
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            24777788999999  8899985322       2235789999999877

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.62  E-value=3e-05  Score=76.98  Aligned_cols=76  Identities=25%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             EEccCCCCCCCC-----CCCCCCCCCEEEccCCCCCCcCCCC--C--CCCCcEEECCCCCCCCCcCCCCCC--CccEEEc
Q 010557          388 AHIAGIGLKAIP-----TISHFSSLRSVNLSNNFIVHIPTGS--M--PKGLHTLNLSRNKINTIEGLREMT--RLRVLDL  456 (507)
Q Consensus       388 L~LS~N~Lt~LP-----~L~~L~sL~~LdLS~N~Is~Ipp~s--f--~~sL~~LdLS~NkLs~Lp~L~~L~--sL~~LdL  456 (507)
                      ++++.|.+..++     ....+++|+.|+|++|.|+.+....  +  .++|+.|+|++|+|+++..+..+.  .|+.|+|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L  227 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL  227 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEEC
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEc
Confidence            566667554433     1246788999999999998876422  1  268999999999998875444343  8889999


Q ss_pred             cCCCCcc
Q 010557          457 SYNRIFR  463 (507)
Q Consensus       457 S~N~Is~  463 (507)
                      ++|.|+.
T Consensus       228 ~~Npl~~  234 (267)
T 3rw6_A          228 DGNSLCD  234 (267)
T ss_dssp             TTSTTGG
T ss_pred             cCCcCcc
Confidence            9998874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.59  E-value=0.00024  Score=73.36  Aligned_cols=72  Identities=14%  Similarity=0.285  Sum_probs=37.7

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC--CCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~  458 (507)
                      |+.+.|.. .++.|+  .|..+.+|+.|+|++|.|+.|+...|. .+|+.+.|..| ++.|+.  |..|.+|+.+.|..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            45555553 455554  555555666666655555555555554 45555555532 444432  55555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.52  E-value=0.0006  Score=70.44  Aligned_cols=99  Identities=12%  Similarity=0.080  Sum_probs=78.5

Q ss_pred             cCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCC-----CcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557          383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIV-----HIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL  451 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is-----~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL  451 (507)
                      ..|+.+.| .+.++.|+  .|..+.+|+.|.|.+|.+.     .|+..+|.  .+|+.+.|. |.++.|+.  |..|++|
T Consensus       248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred             CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence            35788888 46688786  8899999999999888776     68888886  689999998 45887753  8889999


Q ss_pred             cEEEccCCCCcccCCCCCC--CCCEEEcCCCCCCC
Q 010557          452 RVLDLSYNRIFRIGHGNIL--SKPVFWLSFKLFEF  484 (507)
Q Consensus       452 ~~LdLS~N~Is~IP~~~f~--sL~~L~LS~N~Ls~  484 (507)
                      +.|.|..| ++.|+...|.  +|+.+.+..|.+..
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCB
T ss_pred             cEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcc
Confidence            99999554 8888887665  77888998887744

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.40  E-value=7.9e-05  Score=73.92  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=69.7

Q ss_pred             CCCCCCCCE--EEccCCCCCCcCC------CCCCCCCcEEECCCCCCCCCcCC----CCCCCccEEEccCCCCcccCC-C
Q 010557          401 ISHFSSLRS--VNLSNNFIVHIPT------GSMPKGLHTLNLSRNKINTIEGL----REMTRLRVLDLSYNRIFRIGH-G  467 (507)
Q Consensus       401 L~~L~sL~~--LdLS~N~Is~Ipp------~sf~~sL~~LdLS~NkLs~Lp~L----~~L~sL~~LdLS~N~Is~IP~-~  467 (507)
                      |...+.|..  ++++.|.+..++.      ..+ ++|+.|+|++|+|++++++    ..+++|+.|+|++|+|+.+.. .
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l-~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENI-PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHC-TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhC-CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence            444455554  5677786554432      112 5899999999999998653    479999999999999998743 3


Q ss_pred             CCC--CCCEEEcCCCCCCC------------CCCCCCCCcCCeeeC
Q 010557          468 NIL--SKPVFWLSFKLFEF------------LTIIPNCKRLSCNLY  499 (507)
Q Consensus       468 ~f~--sL~~L~LS~N~Ls~------------L~~L~nL~~LscnlI  499 (507)
                      .+.  .|+.|+|++|.+..            +..+++|..|+...+
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL  261 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred             hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence            333  89999999999953            345666666665444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.21  E-value=3.1e-05  Score=81.20  Aligned_cols=120  Identities=10%  Similarity=-0.041  Sum_probs=73.9

Q ss_pred             CCcEEEccCCCCCCC-----C-CCCCCCCCCEEEccCCCCCCcCCCCCC------CCCcEEECCCCCCCCCcC-CCCCCC
Q 010557          384 SSAVAHIAGIGLKAI-----P-TISHFSSLRSVNLSNNFIVHIPTGSMP------KGLHTLNLSRNKINTIEG-LREMTR  450 (507)
Q Consensus       384 sLt~L~LS~N~Lt~L-----P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~------~sL~~LdLS~NkLs~Lp~-L~~L~s  450 (507)
                      .|++|+|++|.++..     + .+..+++|+.|+|++|.++.+....+.      ++|+.|+|++|.+.+++. +..+++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~  244 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN  244 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence            468888888876532     2 234567888888888887754432211      578888888887777654 667778


Q ss_pred             ccEEEccCCCCc-c---c--CCCCCCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCcc
Q 010557          451 LRVLDLSYNRIF-R---I--GHGNILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       451 L~~LdLS~N~Is-~---I--P~~~f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~  503 (507)
                      |+.|+++.+... .   +  ....+.+|+.|.++.+.... +..+..+++|....++.+.
T Consensus       245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            888888743221 1   1  11344577778777754432 3344556667666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.98  E-value=0.0012  Score=58.20  Aligned_cols=51  Identities=22%  Similarity=0.382  Sum_probs=26.5

Q ss_pred             EEEccCCCCC--CCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCC
Q 010557          387 VAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKI  439 (507)
Q Consensus       387 ~L~LS~N~Lt--~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkL  439 (507)
                      .++.++++|+  .+| .|.  .+|+.|+|++|.|+.|+...|.  .+|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555556655  555 322  2455555555555555555443  4455555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.93  E-value=0.00016  Score=75.74  Aligned_cols=118  Identities=19%  Similarity=0.064  Sum_probs=83.0

Q ss_pred             cCCcEEEccCCCCCCC-----C-CCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCC-C---C-cCCCCCCC
Q 010557          383 SSSAVAHIAGIGLKAI-----P-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKIN-T---I-EGLREMTR  450 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~L-----P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs-~---L-p~L~~L~s  450 (507)
                      ..|+.|++++|.++.+     + .+..+++|+.|+|++|.+..++..... ++|+.|+++.+... .   . ..+..+++
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            3589999999999733     3 356789999999999998887642211 78999999864322 1   1 24778899


Q ss_pred             ccEEEccCCCCcccCC--CCCCCCCEEEcCCCCCCC--C-CCCCCCCcCCeeeCC
Q 010557          451 LRVLDLSYNRIFRIGH--GNILSKPVFWLSFKLFEF--L-TIIPNCKRLSCNLYN  500 (507)
Q Consensus       451 L~~LdLS~N~Is~IP~--~~f~sL~~L~LS~N~Ls~--L-~~L~nL~~LscnlIs  500 (507)
                      |+.|+++++....++.  ..+++|+.|+|++|.+..  + ..+..+++|....+.
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            9999999876666665  346699999999998732  1 223455555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.90  E-value=3.9e-05  Score=70.54  Aligned_cols=104  Identities=16%  Similarity=0.099  Sum_probs=74.5

Q ss_pred             CCCCCCCCEEEccCC-CCCCcCC----CCC--CCCCcEEECCCCCCCC-----C-cCCCCCCCccEEEccCCCCcccCC-
Q 010557          401 ISHFSSLRSVNLSNN-FIVHIPT----GSM--PKGLHTLNLSRNKINT-----I-EGLREMTRLRVLDLSYNRIFRIGH-  466 (507)
Q Consensus       401 L~~L~sL~~LdLS~N-~Is~Ipp----~sf--~~sL~~LdLS~NkLs~-----L-p~L~~L~sL~~LdLS~N~Is~IP~-  466 (507)
                      +...+.|+.|+|++| .|..-..    ..+  .++|+.|+|++|.|..     + ..+...+.|+.|+|++|.|+.-.. 
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            566789999999999 8875211    111  1689999999999986     2 136667889999999999986321 


Q ss_pred             ------CCCCCCCEEEc--CCCCCCC------CCCCCCCCcCCeeeCCCccC
Q 010557          467 ------GNILSKPVFWL--SFKLFEF------LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       467 ------~~f~sL~~L~L--S~N~Ls~------L~~L~nL~~LscnlIs~n~~  504 (507)
                            .....|+.|+|  +.|.|..      ...+...++|....+++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                  23458999999  8899832      23444556677777777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.60  E-value=0.0038  Score=54.85  Aligned_cols=54  Identities=22%  Similarity=0.304  Sum_probs=42.2

Q ss_pred             CEEEccCCCCC--CcCCCCCCCCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCc
Q 010557          408 RSVNLSNNFIV--HIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       408 ~~LdLS~N~Is--~Ipp~sf~~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is  462 (507)
                      ..++.+++.++  .||.. ++.+|+.|+|++|+|+.|+.  |..+++|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47788888888  77765 44678888888888888864  778888888888888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.58  E-value=0.00063  Score=69.71  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=53.4

Q ss_pred             CCcEEEccCCCCCC--CCCC--CCCCCCCEEEccC--CC------CCCcCC----CCCCCCCcEEECCCCCCCCC-----
Q 010557          384 SSAVAHIAGIGLKA--IPTI--SHFSSLRSVNLSN--NF------IVHIPT----GSMPKGLHTLNLSRNKINTI-----  442 (507)
Q Consensus       384 sLt~L~LS~N~Lt~--LP~L--~~L~sL~~LdLS~--N~------Is~Ipp----~sf~~sL~~LdLS~NkLs~L-----  442 (507)
                      +|+.|.|..|.|+.  +..+  ..+++|+.|+|+.  |.      +..+.+    ..+ ++|+.|+|.+|.|...     
T Consensus       194 ~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~~l  272 (362)
T 2ra8_A          194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-PNLKWLGIVDAEEQNVVVEMF  272 (362)
T ss_dssp             TCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC-TTCCEEEEESCTTHHHHHHHH
T ss_pred             CCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC-CCcCEEeCCCCCCchHHHHHH
Confidence            46777777666652  1122  2567777777642  11      111111    112 4677777777776531     


Q ss_pred             cCCCCCCCccEEEccCCCCcc-----cCC--CCCCCCCEEEcCCCCC
Q 010557          443 EGLREMTRLRVLDLSYNRIFR-----IGH--GNILSKPVFWLSFKLF  482 (507)
Q Consensus       443 p~L~~L~sL~~LdLS~N~Is~-----IP~--~~f~sL~~L~LS~N~L  482 (507)
                      .....+++|+.|+|+.|.|+.     |..  ..++.|+.|+|+.|.|
T Consensus       273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            112345677777777777764     222  2345677777777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.46  E-value=0.00022  Score=74.67  Aligned_cols=98  Identities=14%  Similarity=0.158  Sum_probs=57.7

Q ss_pred             CCcEEEcc--C----CCCCCCCC-------CCCCCCCCEEEccCCCCCCcCCCCC---CCCCcEEECCCCCCCCC--cCC
Q 010557          384 SSAVAHIA--G----IGLKAIPT-------ISHFSSLRSVNLSNNFIVHIPTGSM---PKGLHTLNLSRNKINTI--EGL  445 (507)
Q Consensus       384 sLt~L~LS--~----N~Lt~LP~-------L~~L~sL~~LdLS~N~Is~Ipp~sf---~~sL~~LdLS~NkLs~L--p~L  445 (507)
                      .|+.|+++  +    |.++..|.       +..+++|+.|+|++ .++......+   .++|+.|+|++|.++..  ..+
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l  476 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV  476 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred             CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence            46777777  3    45554431       45567777777765 4433211111   25677777777777542  222


Q ss_pred             -CCCCCccEEEccCCCCcccCC----CCCCCCCEEEcCCCCC
Q 010557          446 -REMTRLRVLDLSYNRIFRIGH----GNILSKPVFWLSFKLF  482 (507)
Q Consensus       446 -~~L~sL~~LdLS~N~Is~IP~----~~f~sL~~L~LS~N~L  482 (507)
                       ..+++|+.|+|++|.++....    ..+++|+.|+|++|.+
T Consensus       477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence             456777777777777753221    2345777777777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.25  E-value=0.00038  Score=72.89  Aligned_cols=56  Identities=16%  Similarity=0.208  Sum_probs=37.5

Q ss_pred             ccccCCcEEEccCCCCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCCC------CCCCcEEECCCC
Q 010557          380 SLNSSSAVAHIAGIGLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGSM------PKGLHTLNLSRN  437 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf------~~sL~~LdLS~N  437 (507)
                      .++ .|++|++++|.++.     ++ ....+++|+.|+|++|. ..+....+      .++|+.|+|++|
T Consensus       154 ~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          154 TCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            444 57999999988664     33 23477899999999887 32322111      167888888887

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.66  E-value=0.021  Score=57.66  Aligned_cols=93  Identities=13%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             CcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEccC
Q 010557          385 SAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSY  458 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS~  458 (507)
                      |+.+.+..+ +..+.  .|..+..|+.+.+. +.++.|+..+|.  .+|+.++|..+ ++.|.  .|..|.+|+.+.|..
T Consensus       267 L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          267 LASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             ccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            445555433 23343  56666777777764 456666666665  56777777643 55553  266777777777754


Q ss_pred             CCCcccCCCCCC---CCCEEEcCCCC
Q 010557          459 NRIFRIGHGNIL---SKPVFWLSFKL  481 (507)
Q Consensus       459 N~Is~IP~~~f~---sL~~L~LS~N~  481 (507)
                      + ++.|+...|.   +|+.+.+..|.
T Consensus       344 s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          344 S-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             T-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             c-cCEEhHhHhhCCCCCCEEEECCce
Confidence            3 6666665443   56666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.65  E-value=0.0036  Score=59.60  Aligned_cols=101  Identities=13%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             ccCCcEEEccCC-CCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCCCC------CCCcEEECCCCCCCC-----C-
Q 010557          382 NSSSAVAHIAGI-GLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGSMP------KGLHTLNLSRNKINT-----I-  442 (507)
Q Consensus       382 p~sLt~L~LS~N-~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~------~sL~~LdLS~NkLs~-----L-  442 (507)
                      ...|+.|+|++| .|..     |- .+..-+.|+.|+|++|.|.......+.      +.|+.|+|+.|.|..     | 
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            445788899885 7762     22 466678999999999998864433332      679999999999986     2 


Q ss_pred             cCCCCCCCccEEEccCCCCcccCC----------CCCCCCCEEEcCCCCC
Q 010557          443 EGLREMTRLRVLDLSYNRIFRIGH----------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       443 p~L~~L~sL~~LdLS~N~Is~IP~----------~~f~sL~~L~LS~N~L  482 (507)
                      ..+..-+.|+.|+|++|....|..          ..-..|+.|+|+.|.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            236666779999998654322221          1223677788877754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.58  E-value=0.11  Score=51.63  Aligned_cols=94  Identities=13%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEcc
Q 010557          384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS  457 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS  457 (507)
                      .|+.+.+..+ ++.|.  .|..+.+|+.+.+..+ +..+....|.  .+|+.+.+.++.++.|+.  |..|.+|+.+.|.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            3567777654 67665  7788888998888654 7778887776  689999998888888753  8888899999886


Q ss_pred             CCCCcccCCCCCC---CCCEEEcCCC
Q 010557          458 YNRIFRIGHGNIL---SKPVFWLSFK  480 (507)
Q Consensus       458 ~N~Is~IP~~~f~---sL~~L~LS~N  480 (507)
                      .+ ++.|+...|.   +|+.+.+..+
T Consensus       319 ~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          319 TA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            54 8888887775   5666665443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.57  E-value=0.037  Score=55.08  Aligned_cols=85  Identities=19%  Similarity=0.251  Sum_probs=68.4

Q ss_pred             CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEcc
Q 010557          384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLS  457 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS  457 (507)
                      .|+.+.+. +.++.++  .|..+.+|+.+.+.++.++.|...+|.  .+|+.+.|..+ ++.|.  .|.+|.+|+.+.|.
T Consensus       264 ~l~~i~l~-~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          264 ALKTLNFY-AKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TCCEEEEC-CCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             hhcccccc-ccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            35777775 4477776  788999999999999999999998887  68999999755 77775  38899999999887


Q ss_pred             CCCCcccCCCCCCC
Q 010557          458 YNRIFRIGHGNILS  471 (507)
Q Consensus       458 ~N~Is~IP~~~f~s  471 (507)
                      .+ ++.|+...|.+
T Consensus       342 ~~-v~~I~~~aF~~  354 (379)
T 4h09_A          342 KS-ITLIESGAFEG  354 (379)
T ss_dssp             TT-CCEECTTTTTT
T ss_pred             Cc-cCEEchhHhhC
Confidence            55 88888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.53  E-value=0.0016  Score=61.02  Aligned_cols=80  Identities=11%  Similarity=0.142  Sum_probs=59.2

Q ss_pred             CCcEEEccCCCCCC--CCCCCCCCCCCEEEccCCC-CCC-----cCCCC-CCCCCcEEECCCCC-CCC--CcCCCCCCCc
Q 010557          384 SSAVAHIAGIGLKA--IPTISHFSSLRSVNLSNNF-IVH-----IPTGS-MPKGLHTLNLSRNK-INT--IEGLREMTRL  451 (507)
Q Consensus       384 sLt~L~LS~N~Lt~--LP~L~~L~sL~~LdLS~N~-Is~-----Ipp~s-f~~sL~~LdLS~Nk-Ls~--Lp~L~~L~sL  451 (507)
                      .|+.|+++++.|+.  +..+..+++|+.|+|+++. |+.     |.... +.++|+.|+|+++. |+.  +..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            47899999999884  3478899999999999984 654     21110 11369999999974 775  5557788999


Q ss_pred             cEEEccCCC-Ccc
Q 010557          452 RVLDLSYNR-IFR  463 (507)
Q Consensus       452 ~~LdLS~N~-Is~  463 (507)
                      +.|+|++.. |+.
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            999998864 664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.48  E-value=0.025  Score=57.12  Aligned_cols=96  Identities=13%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEcc
Q 010557          384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS  457 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS  457 (507)
                      .|+.+.+. +.++.|+  .|..+.+|+.+.|..+ ++.|...+|.  .+|+.+.|..+ ++.|..  |.+|.+|+.+.+.
T Consensus       289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred             ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence            46778885 6788887  8999999999999865 8899999887  68999999755 777753  9999999999999


Q ss_pred             CCCCcccCCCCCCCCCEEEcCCCCC
Q 010557          458 YNRIFRIGHGNILSKPVFWLSFKLF  482 (507)
Q Consensus       458 ~N~Is~IP~~~f~sL~~L~LS~N~L  482 (507)
                      +|....-......+|+.+.+..|.+
T Consensus       366 ~~~~~~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          366 GSRSQWNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             SCHHHHHTCBCCCCC----------
T ss_pred             CceeehhhhhccCCCCEEEeCCCCE
Confidence            8865422222334666666655543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.33  E-value=0.0089  Score=61.15  Aligned_cols=120  Identities=13%  Similarity=0.061  Sum_probs=81.9

Q ss_pred             cCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCC-----CCCCCCCcEEECCC--CC------CCCCc-CC--C
Q 010557          383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPT-----GSMPKGLHTLNLSR--NK------INTIE-GL--R  446 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp-----~sf~~sL~~LdLS~--Nk------Ls~Lp-~L--~  446 (507)
                      +.|+.|.|++|.--.++.+. +++|+.|+|..+.|..-.-     ..+ ++|+.|+|+.  |.      +..+. .+  .
T Consensus       172 P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             TTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             CCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            46899999998422455443 8999999999888754211     122 5899999863  22      11121 12  3


Q ss_pred             CCCCccEEEccCCCCccc------CCCCCCCCCEEEcCCCCCCC------CCCCCCCCcCCeeeCCCccC
Q 010557          447 EMTRLRVLDLSYNRIFRI------GHGNILSKPVFWLSFKLFEF------LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       447 ~L~sL~~LdLS~N~Is~I------P~~~f~sL~~L~LS~N~Ls~------L~~L~nL~~LscnlIs~n~~  504 (507)
                      .+++|+.|+|.+|.|..-      ....++.|+.|+|+.|.|..      +..+.++++|....++.|.+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            578999999999998731      12457799999999999843      34445677777777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.91  E-value=0.03  Score=56.45  Aligned_cols=78  Identities=21%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCcccCCCCCC---CC
Q 010557          400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGNIL---SK  472 (507)
Q Consensus       400 ~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~f~---sL  472 (507)
                      .|..+.+|+.+.+..+ ++.|...+|.  .+|+.++|..+ ++.|..  |.+|.+|+.+.|..| ++.|+...|.   +|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            5667777888777654 6777777776  57888888644 666642  777888888888766 7777776665   56


Q ss_pred             CEEEcCCC
Q 010557          473 PVFWLSFK  480 (507)
Q Consensus       473 ~~L~LS~N  480 (507)
                      +.+.|..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            77766544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.19  E-value=0.12  Score=51.96  Aligned_cols=77  Identities=18%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             CCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEcc
Q 010557          384 SSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLS  457 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS  457 (507)
                      .|+.+.+.. .++.|+  .|..+.+|+.++|..+ ++.|...+|.  .+|+.+.|..| ++.|..  |..|.+|+.+.|.
T Consensus       298 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          298 SLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             ccccccccc-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            467788864 488886  7999999999999754 8999999987  78999999877 887753  9999999999997


Q ss_pred             CCCCccc
Q 010557          458 YNRIFRI  464 (507)
Q Consensus       458 ~N~Is~I  464 (507)
                      .+ ++.+
T Consensus       375 ~~-~~~~  380 (394)
T 4fs7_A          375 KR-LEQY  380 (394)
T ss_dssp             GG-GGGG
T ss_pred             CC-CEEh
Confidence            55 4444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=91.41  E-value=0.036  Score=51.80  Aligned_cols=76  Identities=13%  Similarity=0.212  Sum_probs=53.5

Q ss_pred             CCCCEEEccCCCCCCcCCCCC--CCCCcEEECCCCC-CCC--CcCCCCC----CCccEEEccCC-CCcc--cCC-CCCCC
Q 010557          405 SSLRSVNLSNNFIVHIPTGSM--PKGLHTLNLSRNK-INT--IEGLREM----TRLRVLDLSYN-RIFR--IGH-GNILS  471 (507)
Q Consensus       405 ~sL~~LdLS~N~Is~Ipp~sf--~~sL~~LdLS~Nk-Ls~--Lp~L~~L----~sL~~LdLS~N-~Is~--IP~-~~f~s  471 (507)
                      ..|+.|||+++.|+...-..+  .++|+.|+|+++. |+.  +..+..+    ++|+.|+|+++ +|+.  +.. ..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999998776322211  2789999999985 765  3445543    47999999987 4874  211 34678


Q ss_pred             CCEEEcCCC
Q 010557          472 KPVFWLSFK  480 (507)
Q Consensus       472 L~~L~LS~N  480 (507)
                      |+.|+|++-
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            999988764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.15  E-value=0.033  Score=52.94  Aligned_cols=79  Identities=18%  Similarity=0.104  Sum_probs=56.3

Q ss_pred             CCCCCCCEEEccCC-CCCCcCC----CCC-C-CCCcEEECCCCCCCCC--c----CCCCCCCccEEEccCCCCcccCC--
Q 010557          402 SHFSSLRSVNLSNN-FIVHIPT----GSM-P-KGLHTLNLSRNKINTI--E----GLREMTRLRVLDLSYNRIFRIGH--  466 (507)
Q Consensus       402 ~~L~sL~~LdLS~N-~Is~Ipp----~sf-~-~sL~~LdLS~NkLs~L--p----~L~~L~sL~~LdLS~N~Is~IP~--  466 (507)
                      ..-+.|+.|+|++| .|..-..    ..+ . +.|+.|+|++|.|...  .    .+..-+.|+.|+|+.|.|..-..  
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34578999999985 7764211    111 1 6899999999999862  1    25566889999999999985332  


Q ss_pred             -----CCCCCCCEEEcCCC
Q 010557          467 -----GNILSKPVFWLSFK  480 (507)
Q Consensus       467 -----~~f~sL~~L~LS~N  480 (507)
                           ..-..|+.|+|++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence                 22337899999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-09
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 13/65 (20%), Positives = 32/65 (49%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  +S  + L+ +  +NN +  + + +    ++ L+   N+I+ +  L  +TR+  L
Sbjct: 319 ISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 378

Query: 455 DLSYN 459
            L+  
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 403 HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
           +  +L  + L  N I  I   S    L  L  + NK++ +  L  +T +  L   +N+I
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 7e-07
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR 463
            +      L    +    + +    + TL   R  I +I+G+  +  L  ++ S N++  
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80

Query: 464 I 464
           I
Sbjct: 81  I 81

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 21/107 (19%), Positives = 42/107 (39%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +  I  +   ++L  ++L+ N +  I T +    L  L+L+ N+I+ +  L  +T+L  L
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268

Query: 455 DLSYNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNS 501
            L  N+I  I     L+        +         +  +    L   
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 13/72 (18%), Positives = 29/72 (40%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVL 454
           +    + +    + ++      I  I        L  +N S N++  I  L+ +T+L  +
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDI 93

Query: 455 DLSYNRIFRIGH 466
            ++ N+I  I  
Sbjct: 94  LMNNNQIADITP 105

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)

Query: 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREM 448
            + G  LK I T++  ++L  ++L+NN I ++   S    L  L L  N+I+ I  L  +
Sbjct: 225 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 284

Query: 449 TRLRVLDLSYNRIFRIGHGNILSKPVF-WLSFKLFEFLTIIPNCKRL 494
           T L  L+L+ N++  I   + L    +  L F     ++ + +  +L
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 331

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
           +  ++L S+  +NN I  I    +   L  L+L+ N++  I  L  +T L  LDL+ N+I
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253

Query: 462 FRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYN 500
             +   + L+K +  L     +   I P     +     
Sbjct: 254 SNLAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLE 291

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 11/81 (13%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 358 HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFI 417
           +L   + + L    +   S + SL +       A   +  + ++++ +++  ++  +N I
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSL-TKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363

Query: 418 VH-IPTGSMPKGLHTLNLSRN 437
               P  ++ + +  L L+  
Sbjct: 364 SDLTPLANLTR-ITQLGLNDQ 383

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 410 VNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL-REMTRLRVLDLSYNRIFRIGHGN 468
           V L+   I      +       L+L   KI  IE L   + +   +D S N I ++    
Sbjct: 1   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 469 ILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSH 504
           +L +    L              + L        ++
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 96

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIP-TGSMPKGLHTLNLSRNKINTIEGLREMTRLRV 453
           ++     ++    R ++L    I  I   G+       ++ S N+I  ++G   + RL+ 
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKT 67

Query: 454 LDLSYNRIFRIGHGNILSKPV---FWLSFKLFEFLTIIPNCKRLSCNLYNSKSH 504
           L ++ NRI RIG G   + P      L+      L  +     L    Y     
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 403 HFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
              SL  +N+SNN ++ +P  ++P  L  L  S N +  +  L     L+ L + YN +
Sbjct: 282 LPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI-EGLREMTRLRV 453
           L  +P  +    L  +  S N +  +P   +P+ L  L++  N +    +    +  LR+
Sbjct: 296 LIELP--ALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
                + L+N  +  +P   +P  L +L  S N +  +  L     L+ L +  N +  +
Sbjct: 38  RQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKAL 93

Query: 465 GH 466
             
Sbjct: 94  SD 95

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 408 RSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI 464
             +N S+N I  +    +P  L  LN+S NK+  +  L    RL  L  S+N +  +
Sbjct: 267 YYLNASSNEIRSLCD--LPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEV 319

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLS 457
            +S  +S   VN     +  +P   +PK    L+LS N + T     L   TRL  L+L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 458 YNRIFRIGHGNILSKPVFW 476
              + ++     L      
Sbjct: 64  RAELTKLQVDGTLPVLGTL 82

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 399 PTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
             +++ S L ++   +N I  I   +    L  ++L  N+I+ +  L   + L ++ L+
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFR 463
            ++   +    + +    T +   G+ TL+     + TIEG++ +  L  L+L  N+I  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77

Query: 464 IGHGNILSKPVFW 476
           +     L+K    
Sbjct: 78  LAPLKNLTKITEL 90

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 26/101 (25%)

Query: 387 VAHIAGIGLKAIPTISHFSSLRSVNLSNNFI-----------------------VHIPTG 423
           V H+A   L  +  +     +  ++LS+N +                        ++   
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 424 SMPKGLHTLNLSRNKINTI---EGLREMTRLRVLDLSYNRI 461
           +    L  L L  N++      + L    RL +L+L  N +
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNF 416
             L   + ++LS   L A     +      V   +   L+ +  +++   L+ + L NN 
Sbjct: 17  EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 76

Query: 417 IVHIPT----GSMPKGLHTLNLSRNKINTIEGLRE 447
           +          S P+ L  LNL  N +   EG++E
Sbjct: 77  LQQSAAIQPLVSCPR-LVLLNLQGNSLCQEEGIQE 110

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 23/59 (38%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF 462
            +      L    +    + +    + TL   R  I +I+G+  +  L  ++ S N++ 
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 75

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 392 GIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLRE 447
            +GL+ +P          ++L NN I  I  G     K LHTL L  NKI+ I       
Sbjct: 19  DLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 448 MTRLRVLDLSYNRIFRI 464
           + +L  L LS N++  +
Sbjct: 78  LVKLERLYLSKNQLKEL 94

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 400 TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTI--EGLREMTRLRVLDLS 457
                  L  + +++  I  IP G  P  L  L+L  NKI  +    L+ +  L  L LS
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 458 YNRIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNL 498
           +N I  + +G++ + P           L  +P        +
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 414 NNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLS 457
           +N I  I   +    L  L LS+N I+ +  L  +  L VL+L 
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 9/58 (15%), Positives = 26/58 (44%)

Query: 404 FSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRI 461
           F+     NL    +    T +    +  +  + + I +++G++ +  +  L L+ N++
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 395 LKAIPTISHFSSLRSVNLSNNFIVHIPT-GSMPKGLHTLNLSRNKINTIEGL----REMT 449
           L++ P +   +    +N  ++    +         L +LNLS N++  ++ +    ++  
Sbjct: 32  LRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAP 91

Query: 450 RLRVLDLSYNRIFRIGHGNILSKPVFW 476
            L++L+LS N +      + +      
Sbjct: 92  NLKILNLSGNELKSERELDKIKGLKLE 118

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 9/65 (13%)

Query: 406 SLRSVNLSNNFIVHIPTGSMPKGLH---TLNLSRNKINTI------EGLREMTRLRVLDL 456
            ++S+++    +       +   L     + L    +           LR    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 457 SYNRI 461
             N +
Sbjct: 63  RSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 13/73 (17%)

Query: 402 SHFSSLRSVNLSNNFIVHIPTGSMPKG------LHTLNLSRNKINT------IEGLRE-M 448
              S LR + L++  +      S+         L  L+LS N +        +E +R+  
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 449 TRLRVLDLSYNRI 461
             L  L L     
Sbjct: 426 CLLEQLVLYDIYW 438

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.4
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.23
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.13
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.13
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.1
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.04
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.99
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.59
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.54
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.04
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.55

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=1.7e-13  Score=124.51  Aligned_cols=105  Identities=20%  Similarity=0.259  Sum_probs=94.0

Q ss_pred             hccccCCcEEEccCCCCCC-CC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557          379 RSLNSSSAVAHIAGIGLKA-IP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL  451 (507)
Q Consensus       379 ~~Lp~sLt~L~LS~N~Lt~-LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL  451 (507)
                      .++|..+++|+|++|.|+. ++  .|..+++|+.|+|++|.|..+++..|.  .+|+.|+|++|+|+.++.  |..+++|
T Consensus        25 ~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          25 RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL  104 (192)
T ss_dssp             SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred             CCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcc
Confidence            4577889999999999985 54  789999999999999999999998876  889999999999999864  9999999


Q ss_pred             cEEEccCCCCcccCCCCCC---CCCEEEcCCCCCC
Q 010557          452 RVLDLSYNRIFRIGHGNIL---SKPVFWLSFKLFE  483 (507)
Q Consensus       452 ~~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~Ls  483 (507)
                      +.|+|++|+|+.|+.+.|.   +|+.|+|++|.+.
T Consensus       105 ~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCCccccccCHHHhcCCcccccccccccccc
Confidence            9999999999999987665   7889999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.1e-13  Score=119.31  Aligned_cols=100  Identities=20%  Similarity=0.245  Sum_probs=85.3

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCccc
Q 010557          386 AVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI  464 (507)
Q Consensus       386 t~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is~I  464 (507)
                      ++|++++|+|+.++.+..+++|++|+|++|.|+.+++.... .+|+.|++++|.|+.++++..+++|+.|++++|+|+.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            47899999999998889999999999999999998764322 78999999999999998899999999999999999987


Q ss_pred             CC----CCCCCCCEEEcCCCCCCCC
Q 010557          465 GH----GNILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       465 P~----~~f~sL~~L~LS~N~Ls~L  485 (507)
                      +.    ..++.|+.|++++|.|...
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcC
Confidence            64    3456888999999988543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1e-12  Score=119.90  Aligned_cols=141  Identities=22%  Similarity=0.210  Sum_probs=87.6

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE  443 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp  443 (507)
                      .|.+.+..+.....+..++ .|++|++++|.|+.++.|..+++|++|++++|.+..+++......|+.|++++|.+..++
T Consensus        44 ~L~l~~~~i~~l~~l~~l~-nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~  122 (199)
T d2omxa2          44 TLQADRLGIKSIDGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID  122 (199)
T ss_dssp             EEECTTSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred             EEECCCCCCCCccccccCC-CcCcCccccccccCcccccCCccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444455553 457777777777766666677777777777777666654322256667777766666666


Q ss_pred             CCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          444 GLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       444 ~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      .+..+++|+.|++++|+|..++. ..+..|+.|++.+|.++.+..+.++++|....+++|++.
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         123 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             ccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCC
Confidence            66666667777777776666553 445566666666666666655666666666666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.3e-12  Score=122.28  Aligned_cols=145  Identities=19%  Similarity=0.228  Sum_probs=110.6

Q ss_pred             hcccccccCCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECC
Q 010557          359 LTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLS  435 (507)
Q Consensus       359 L~~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS  435 (507)
                      +..+..|.+..+.+..+..+..++ .|+.|+|++|.|+.++ .+..+++|++|++++|.+..++...+.  .+|..|+++
T Consensus        54 l~~L~~L~L~~N~l~~l~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~  132 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTKLQVDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (266)
T ss_dssp             CTTCCEEECTTSCCCEEECCSCCT-TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccceeecccccccccccccccc
Confidence            334444555555555555555554 4788899999888777 788888899999998888888876665  688899999


Q ss_pred             CCCCCCCcC--CCCCCCccEEEccCCCCcccCCCC---CCCCCEEEcCCCCCCC-CCCCCCCCcCCeeeCCCccC
Q 010557          436 RNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGN---ILSKPVFWLSFKLFEF-LTIIPNCKRLSCNLYNSKSH  504 (507)
Q Consensus       436 ~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~IP~~~---f~sL~~L~LS~N~Ls~-L~~L~nL~~LscnlIs~n~~  504 (507)
                      +|.|+.++.  +..++.|+.|++++|+|+.++.+.   +.+|+.|+|++|.|+. +..+..+..|....+++|+.
T Consensus       133 ~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            999988764  777889999999999999888754   4578889999999855 45677788888877777753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1.5e-12  Score=120.07  Aligned_cols=135  Identities=22%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             ccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC
Q 010557          365 INLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG  444 (507)
Q Consensus       365 LsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~  444 (507)
                      |.++++.+.....+..++ .|+.|++++|.|+.++.+..+++|+.|++++|.+..++.......|+.+++++|.++.++.
T Consensus        73 L~L~~n~i~~l~~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~  151 (210)
T d1h6ta2          73 LFLNGNKLTDIKPLANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV  151 (210)
T ss_dssp             EECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred             EeCCCccccCccccccCc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344444444444444443 3556666666666555555566666666666655554432222456666666666665555


Q ss_pred             CCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCC
Q 010557          445 LREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYN  500 (507)
Q Consensus       445 L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs  500 (507)
                      +..+++|+.+++++|+|+.++. ..+++|+.|+|++|.|+.++.+..|++|+...++
T Consensus       152 ~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             ccccccccccccccccccccccccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEcc
Confidence            5666777777777777776643 4556777777777777666666666666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=2.8e-12  Score=116.39  Aligned_cols=118  Identities=22%  Similarity=0.263  Sum_probs=100.7

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCC-cCCCCCC--CCCcEEECCCCCCCCCc--CCCCCCCccEEEccCC
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVH-IPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYN  459 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~-Ipp~sf~--~sL~~LdLS~NkLs~Lp--~L~~L~sL~~LdLS~N  459 (507)
                      ++++.++++|+.|| .+.  +++++|+|++|.|+. ++...|.  .+|+.|+|++|.|..++  .+..++.|+.|+|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            56899999999999 664  799999999999986 5566664  79999999999999975  3889999999999999


Q ss_pred             CCcccCCCCCC---CCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccCC
Q 010557          460 RIFRIGHGNIL---SKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       460 ~Is~IP~~~f~---sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~~  505 (507)
                      +|+.|+.+.|.   .|+.|+|++|.|+.+  ..+..+.+|....++.|...
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999987655   778999999999654  45778888999888888654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.1e-12  Score=118.80  Aligned_cols=130  Identities=17%  Similarity=0.193  Sum_probs=107.4

Q ss_pred             hhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcC--CCCCCCcc
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG--LREMTRLR  452 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~--L~~L~sL~  452 (507)
                      ..+..++ .|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.++..... .+|+.|++++|.+..++.  +..+.+|.
T Consensus        49 ~~f~~l~-~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  127 (266)
T d1p9ag_          49 ATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (266)
T ss_dssp             GGGTTCT-TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             HHhhccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccccccccccc
Confidence            4566665 4799999999999998778899999999999999988775443 789999999999998753  78889999


Q ss_pred             EEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCccCCC
Q 010557          453 VLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       453 ~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .|++++|.|+.++...+   ..|+.|++++|+|..+  ..+..+.+|....+++|.+..
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence            99999999999987654   4788899999999554  447788888888888887653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=4.2e-12  Score=115.80  Aligned_cols=135  Identities=21%  Similarity=0.275  Sum_probs=114.2

Q ss_pred             ccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCC
Q 010557          361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKIN  440 (507)
Q Consensus       361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs  440 (507)
                      .+..|.++++.+.....+..++. |+.|++++|.+..++.+..++.|+.|++++|.+..+.+....++|+.|++++|+|.
T Consensus        63 nL~~L~Ls~N~l~~~~~l~~l~~-L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2          63 NLTQINFSNNQLTDITPLKNLTK-LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTT-CCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred             CcCcCccccccccCcccccCCcc-cccccccccccccccccccccccccccccccccccccccchhhhhHHhhhhhhhhc
Confidence            34445666666666666777764 79999999999999989999999999999999998766443478999999999999


Q ss_pred             CCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCe
Q 010557          441 TIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSC  496 (507)
Q Consensus       441 ~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~Lsc  496 (507)
                      .++.+..+++|+.|++.+|+|+.++. ..+++|+.|+|++|+|+.++.+..|++|..
T Consensus       142 ~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~  198 (199)
T d2omxa2         142 DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES  198 (199)
T ss_dssp             CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             ccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCCccccCCCCCCc
Confidence            99889999999999999999998874 678899999999999988777777777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=2.5e-12  Score=118.42  Aligned_cols=144  Identities=19%  Similarity=0.194  Sum_probs=119.9

Q ss_pred             ccccccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCC
Q 010557          361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKIN  440 (507)
Q Consensus       361 ~~ldLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs  440 (507)
                      .+..+.++.+.+.....+..++ .|+.|++++|.|+.++.+..+++|++|++++|.|+.++.....++|+.|++++|.+.
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~-~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCC
T ss_pred             CccEEECcCCCCCCchhHhhCC-CCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccccc
Confidence            4445555665555555666665 479999999999999888899999999999999999876443478999999999999


Q ss_pred             CCcCCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCC
Q 010557          441 TIEGLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       441 ~Lp~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      .++.+..++.|+.+++++|.++.++. ..++.|+.+++++|.+..+..+.++++|....+++|.+.
T Consensus       126 ~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCC
Confidence            99889999999999999999987654 457799999999999988877888888888888877654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=117.60  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=84.9

Q ss_pred             CCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCC
Q 010557          384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNR  460 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~  460 (507)
                      .++.|+|++|+|+.|+ .+..+++|+.|+|++|.|+.++.....++|+.|+|++|+|+.++.  +..++.|+.|+|++|+
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS   98 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceecccc
Confidence            4688999999999998 457789999999999999998654334789999999999999864  5678999999999999


Q ss_pred             CcccCC----CCCCCCCEEEcCCCCCCCC
Q 010557          461 IFRIGH----GNILSKPVFWLSFKLFEFL  485 (507)
Q Consensus       461 Is~IP~----~~f~sL~~L~LS~N~Ls~L  485 (507)
                      |+.++.    ..+++|+.|++++|.+...
T Consensus        99 i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          99 LVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccccccccccccccccchhhcCCCccccc
Confidence            987764    3567899999999988543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=4.2e-12  Score=109.20  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=83.2

Q ss_pred             CCccccccchhhhccccCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcC-
Q 010557          367 LSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEG-  444 (507)
Q Consensus       367 Ln~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~-  444 (507)
                      ++++.+.....+..++ .|++|++++|.|+.+| .|..+++|+.|++++|.|+.++.....++|+.|++++|+|+.++. 
T Consensus         5 Ls~n~l~~l~~l~~l~-~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~   83 (124)
T d1dcea3           5 LAHKDLTVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI   83 (124)
T ss_dssp             CTTSCCSSCCCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             cCCCCCCCCcccccCC-CCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCc
Confidence            3444455555677775 4799999999999998 899999999999999999999763333799999999999998764 


Q ss_pred             --CCCCCCccEEEccCCCCcccCC
Q 010557          445 --LREMTRLRVLDLSYNRIFRIGH  466 (507)
Q Consensus       445 --L~~L~sL~~LdLS~N~Is~IP~  466 (507)
                        +..+++|+.|+|++|.|+.++.
T Consensus        84 ~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          84 QPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             hhhcCCCCCCEEECCCCcCCcCcc
Confidence              7888999999999999997764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.9e-11  Score=118.15  Aligned_cols=138  Identities=18%  Similarity=0.236  Sum_probs=100.1

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE  443 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp  443 (507)
                      .+.+.++.+.....+..++ .|+.|++++|.++.++.+..+..++.+.+..|.+..+.......+++.|+|++|+|++++
T Consensus       245 ~L~l~~n~l~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~  323 (384)
T d2omza2         245 DLDLANNQISNLAPLSGLT-KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS  323 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG
T ss_pred             hhccccCccCCCCcccccc-cCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc
Confidence            3444444444444455554 357777777777766666677777777777777776654333368888999999988887


Q ss_pred             CCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCc
Q 010557          444 GLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       444 ~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n  502 (507)
                      .+..+++|+.|+|++|+|+.++. ..+++|+.|+|++|+|+.+..+.+|++|....++.|
T Consensus       324 ~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            78888899999999998888763 456788889999998877666888888888877765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=3.7e-11  Score=116.11  Aligned_cols=142  Identities=18%  Similarity=0.239  Sum_probs=121.4

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE  443 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp  443 (507)
                      .+.++++.+.....+..++ .++.|++++|.++.++.+..+++|+.|++++|.++.+++......+..+.++.|.++.++
T Consensus       223 ~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~  301 (384)
T d2omza2         223 ELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS  301 (384)
T ss_dssp             EEECCSSCCCCCGGGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG
T ss_pred             EEECCCCCCCCcchhhccc-ccchhccccCccCCCCcccccccCCEeeccCcccCCCCcccccccccccccccccccccc
Confidence            3455666666666677664 479999999999998888899999999999999999877544478999999999999988


Q ss_pred             CCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          444 GLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       444 ~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .+..++.|+.|+|++|+|+.++. ..+++|+.|+|++|.|+.++.+.+|++|....+++|.+..
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCB
T ss_pred             ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCC
Confidence            88999999999999999998764 6788999999999999888889999999999998887653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.4e-12  Score=111.49  Aligned_cols=113  Identities=16%  Similarity=0.160  Sum_probs=91.9

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT  441 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~  441 (507)
                      .|++.++.+..+..+..-...|+.|++++|.|+.++.|..+++|++|+|++|.|+.+++..+.  .+|+.|+|++|+|+.
T Consensus        22 ~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          22 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE  101 (162)
T ss_dssp             EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             EEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccccccc
Confidence            456666666655444332345899999999999999999999999999999999999987653  799999999999998


Q ss_pred             Cc---CCCCCCCccEEEccCCCCcccCC------CCCCCCCEEE
Q 010557          442 IE---GLREMTRLRVLDLSYNRIFRIGH------GNILSKPVFW  476 (507)
Q Consensus       442 Lp---~L~~L~sL~~LdLS~N~Is~IP~------~~f~sL~~L~  476 (507)
                      ++   .+..+++|+.|+|++|.|+.++.      ..+++|+.|+
T Consensus       102 ~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         102 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            75   37889999999999999998874      3456666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.2e-11  Score=104.96  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=64.4

Q ss_pred             cEEEccCCCCCCCC-CCCCCCCCCEEEccCC-CCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCC
Q 010557          386 AVAHIAGIGLKAIP-TISHFSSLRSVNLSNN-FIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYN  459 (507)
Q Consensus       386 t~L~LS~N~Lt~LP-~L~~L~sL~~LdLS~N-~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N  459 (507)
                      ..+.++++++..+| .+..+++|+.|+|++| .|+.|++..|.  .+|+.|+|++|+|+.|+.  |..+++|+.|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            34566666666666 6666777777777544 47777666554  567777777777777642  666777777777777


Q ss_pred             CCcccCCCCCC--CCCEEEcCCCCC
Q 010557          460 RIFRIGHGNIL--SKPVFWLSFKLF  482 (507)
Q Consensus       460 ~Is~IP~~~f~--sL~~L~LS~N~L  482 (507)
                      +|+.|+.+.|.  .|..|+|++|.|
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccChhhhccccccccccCCCcc
Confidence            77777766554  555677777766

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.9e-10  Score=107.88  Aligned_cols=125  Identities=18%  Similarity=0.257  Sum_probs=81.6

Q ss_pred             hhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCCCc
Q 010557          378 IRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMTRL  451 (507)
Q Consensus       378 l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~sL  451 (507)
                      +..++ .|+.|++++|.+..++  .+..+.+|+.+++++|.|+.+++..|.  .+|+.|+|++|.|+.++.  |..+++|
T Consensus       101 ~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         101 FHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccc-cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            44443 3577777777776654  566677777777777777777766654  567777777777776643  6677777


Q ss_pred             cEEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCC--CCCCCCCcCCeeeCCCcc
Q 010557          452 RVLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFL--TIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       452 ~~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L--~~L~nL~~LscnlIs~n~  503 (507)
                      +.|++++|+++.++...|   .+|..|+++.|.|..+  ..++.+.+|....+++|+
T Consensus       180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            777777777776655433   3666777777777443  345566666666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.4e-10  Score=105.99  Aligned_cols=129  Identities=18%  Similarity=0.186  Sum_probs=105.1

Q ss_pred             hhhccccCCcEEEc-cCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC--CCCCC
Q 010557          377 VIRSLNSSSAVAHI-AGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG--LREMT  449 (507)
Q Consensus       377 ~l~~Lp~sLt~L~L-S~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~--L~~L~  449 (507)
                      .+..+.. +..+.+ ..|.++.++  .|..+++|++|+|++|.+..+....+.  .+|+.+++++|.|+.++.  |..++
T Consensus        75 ~~~~~~~-~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~  153 (284)
T d1ozna_          75 AFTGLAL-LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG  153 (284)
T ss_dssp             TTTTCTT-CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccccccc-ccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc
Confidence            3333433 455544 567788875  799999999999999999998887665  789999999999999863  88999


Q ss_pred             CccEEEccCCCCcccCCCCCC---CCCEEEcCCCCCCC--CCCCCCCCcCCeeeCCCccCCC
Q 010557          450 RLRVLDLSYNRIFRIGHGNIL---SKPVFWLSFKLFEF--LTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       450 sL~~LdLS~N~Is~IP~~~f~---sL~~L~LS~N~Ls~--L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .|+.|+|++|+|+.++...|.   .|+.+++++|.+..  +..+..+.+|....++.|.+..
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc
Confidence            999999999999999887665   68889999999953  4678888888888888887654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=3.5e-10  Score=104.07  Aligned_cols=116  Identities=15%  Similarity=0.184  Sum_probs=77.1

Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCccc
Q 010557          385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRI  464 (507)
Q Consensus       385 Lt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is~I  464 (507)
                      |+.+.+++|.+..++.+...+.+..+.++++.+....+.....+|+.|++++|.+..++.+..+++|+.|+|++|+|+.+
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCC
Confidence            34444444444433333444444444444444443332222267888889888888877788888999999999998887


Q ss_pred             CC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCC
Q 010557          465 GH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYN  500 (507)
Q Consensus       465 P~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs  500 (507)
                      +. ..+++|+.|+|++|+|+.+..+.++++|....++
T Consensus       189 ~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             hhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEee
Confidence            65 5567888999999988777777778877776553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=7.3e-10  Score=105.49  Aligned_cols=104  Identities=18%  Similarity=0.243  Sum_probs=63.9

Q ss_pred             hhhccccCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc-----------
Q 010557          377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE-----------  443 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp-----------  443 (507)
                      .+..++ .|+.|++++|.+..++  .|..++.|+.|+|++|.|+.++...+ ..|..|++++|.+..++           
T Consensus        50 ~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~-~~l~~L~~~~n~l~~l~~~~~~~~~~~~  127 (305)
T d1xkua_          50 DFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMI  127 (305)
T ss_dssp             TTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             Hhhccc-cccccccccccccccchhhhhCCCccCEecccCCccCcCccchh-hhhhhhhccccchhhhhhhhhhcccccc
Confidence            344443 3566666666666553  46666666666666666666655433 34555555555554421           


Q ss_pred             -----------------CCCCCCCccEEEccCCCCcccCCCCCCCCCEEEcCCCCC
Q 010557          444 -----------------GLREMTRLRVLDLSYNRIFRIGHGNILSKPVFWLSFKLF  482 (507)
Q Consensus       444 -----------------~L~~L~sL~~LdLS~N~Is~IP~~~f~sL~~L~LS~N~L  482 (507)
                                       .+..++.|+.+++++|.++.++...+.+|+.|++++|.+
T Consensus       128 ~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI  183 (305)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC
T ss_pred             ccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcC
Confidence                             023366778888888888877777777777777776655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.04  E-value=5.6e-10  Score=106.33  Aligned_cols=104  Identities=25%  Similarity=0.351  Sum_probs=89.4

Q ss_pred             cccCCcEEEccCCCCCCC-C-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCCCccEEE
Q 010557          381 LNSSSAVAHIAGIGLKAI-P-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMTRLRVLD  455 (507)
Q Consensus       381 Lp~sLt~L~LS~N~Lt~L-P-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~sL~~Ld  455 (507)
                      ++..++.|++++|.++.. + .|..++.++.|++++|.|..+++..+.  .+|+.|+|++|+|+.+|. |..+++|+.|+
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEE
T ss_pred             cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEE
Confidence            456789999999998855 4 789999999999999999999887775  789999999999999975 88999999999


Q ss_pred             ccCCCCcccCCCCC---------CCCCEEEcCCCCCCC
Q 010557          456 LSYNRIFRIGHGNI---------LSKPVFWLSFKLFEF  484 (507)
Q Consensus       456 LS~N~Is~IP~~~f---------~sL~~L~LS~N~Ls~  484 (507)
                      |++|+|+.|+...|         .+|+.|+|++|.+..
T Consensus       249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            99999999986544         367889999998854

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=3.9e-09  Score=99.65  Aligned_cols=115  Identities=19%  Similarity=0.213  Sum_probs=85.2

Q ss_pred             ccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCC
Q 010557          380 SLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYN  459 (507)
Q Consensus       380 ~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N  459 (507)
                      .++..|++|++++|+|+.+|..  +.+|+.|++++|.++.++.  ++..|++|+|++|.|..+|.+..++.|+.|++++|
T Consensus        55 ~~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~--lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          55 ELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             SCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh--hccccccccccccccccccchhhhccceeeccccc
Confidence            4556789999999999999843  4689999999999998864  34679999999999999998888999999999999


Q ss_pred             CCcccCCCCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeC
Q 010557          460 RIFRIGHGNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLY  499 (507)
Q Consensus       460 ~Is~IP~~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlI  499 (507)
                      .+..++. ....+..+.+..+.......+..+..+....+
T Consensus       131 ~~~~~~~-~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         131 SLKKLPD-LPPSLEFIAAGNNQLEELPELQNLPFLTAIYA  169 (353)
T ss_dssp             CCSCCCC-CCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             ccccccc-ccccccchhhccccccccccccccccceeccc
Confidence            9887664 23445555555555444444444444443333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=2.2e-09  Score=98.64  Aligned_cols=142  Identities=15%  Similarity=0.215  Sum_probs=92.9

Q ss_pred             cccCCccccccchhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCc
Q 010557          364 EINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE  443 (507)
Q Consensus       364 dLsLn~~il~~~s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp  443 (507)
                      .+.++++.+.....+..++ .++.+++++|.++.++.+..+++|+.|.++++.+..+.+......+..+.++.+.+....
T Consensus        67 ~L~ls~n~i~~~~~l~~l~-~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  145 (227)
T d1h6ua2          67 GLELKDNQITDLAPLKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS  145 (227)
T ss_dssp             EEECCSSCCCCCGGGTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             EeecCCceeeccccccccc-cccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhhchhh
Confidence            3444444444333344443 245555555555555555555555555555555554444333345556666666665555


Q ss_pred             CCCCCCCccEEEccCCCCcccCC-CCCCCCCEEEcCCCCCCCCCCCCCCCcCCeeeCCCccCCC
Q 010557          444 GLREMTRLRVLDLSYNRIFRIGH-GNILSKPVFWLSFKLFEFLTIIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       444 ~L~~L~sL~~LdLS~N~Is~IP~-~~f~sL~~L~LS~N~Ls~L~~L~nL~~LscnlIs~n~~~~  506 (507)
                      .+..+++|+.|++++|.++.++. ..+++|+.|+|++|.+..+..+..+++|....+++|.+..
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB
T ss_pred             hhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCC
Confidence            56778889999999999986554 6778999999999999888888889999998888887653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=8.8e-13  Score=121.79  Aligned_cols=106  Identities=23%  Similarity=0.330  Sum_probs=90.5

Q ss_pred             hhhhccccCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCCCcCCCCCCCccEE
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEGLREMTRLRVL  454 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~Lp~L~~L~sL~~L  454 (507)
                      ..+..|+ .|+.|+|++|.|+.++.|..|++|+.|+|++|.|+.++..... .+|+.|++++|.|+.++++..+++|+.|
T Consensus        42 ~sl~~L~-~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          42 ATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HHHHHTT-TCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             hHHhccc-ccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455564 4799999999999999889999999999999999998753322 5799999999999999888889999999


Q ss_pred             EccCCCCcccCC----CCCCCCCEEEcCCCCC
Q 010557          455 DLSYNRIFRIGH----GNILSKPVFWLSFKLF  482 (507)
Q Consensus       455 dLS~N~Is~IP~----~~f~sL~~L~LS~N~L  482 (507)
                      +|++|+|+.++.    ..++.|+.|+|++|.+
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCcc
Confidence            999999997753    5678999999999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.94  E-value=3.8e-09  Score=99.78  Aligned_cols=106  Identities=19%  Similarity=0.293  Sum_probs=85.5

Q ss_pred             cCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCCCCCCCccEEEccCCCCc
Q 010557          383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~LP~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L~~L~sL~~LdLS~N~Is  462 (507)
                      ..+++|+|++|.|+.+|.+  +++|++|+|++|.|+.+|..  ..+|+.|++++|.++.++.+.  +.|+.|+|++|.|+
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLE  111 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhc--cccccccccccccc
Confidence            4578999999999999953  57899999999999999754  358999999999999887643  46999999999999


Q ss_pred             ccCC-CCCCCCCEEEcCCCCCCCC-CCCCCCCcC
Q 010557          463 RIGH-GNILSKPVFWLSFKLFEFL-TIIPNCKRL  494 (507)
Q Consensus       463 ~IP~-~~f~sL~~L~LS~N~Ls~L-~~L~nL~~L  494 (507)
                      .+|. +.+..|+.|++++|.+... .....+..|
T Consensus       112 ~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  145 (353)
T d1jl5a_         112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI  145 (353)
T ss_dssp             SCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             cccchhhhccceeeccccccccccccccccccch
Confidence            9986 4466999999999988443 333334333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.1e-09  Score=92.73  Aligned_cols=86  Identities=17%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             hhhhccccCCcEEEccCC-CCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCCCcC-CCCCC
Q 010557          376 SVIRSLNSSSAVAHIAGI-GLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIEG-LREMT  449 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N-~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~Lp~-L~~L~  449 (507)
                      ..+..++ .++.|++.+| .|+.|+  .|..+++|+.|+|++|.|+.|++..|.  ++|+.|+|++|+|+.++. .....
T Consensus        25 ~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          25 HHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (156)
T ss_dssp             TTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             ccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence            3344443 4789999876 599987  799999999999999999999998776  799999999999999864 33344


Q ss_pred             CccEEEccCCCCc
Q 010557          450 RLRVLDLSYNRIF  462 (507)
Q Consensus       450 sL~~LdLS~N~Is  462 (507)
                      .|+.|+|++|.+.
T Consensus       104 ~l~~L~L~~Np~~  116 (156)
T d2ifga3         104 SLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCC
T ss_pred             cccccccCCCccc
Confidence            7999999999985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.70  E-value=6.2e-09  Score=99.49  Aligned_cols=77  Identities=19%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             CCCcEEECCCCCCCCC-cCCCCCCCccEEEccCCCCc-ccCC--CCCCCCCEEEcCCCCCC-CCCCCCCCCcCCeeeCCC
Q 010557          427 KGLHTLNLSRNKINTI-EGLREMTRLRVLDLSYNRIF-RIGH--GNILSKPVFWLSFKLFE-FLTIIPNCKRLSCNLYNS  501 (507)
Q Consensus       427 ~sL~~LdLS~NkLs~L-p~L~~L~sL~~LdLS~N~Is-~IP~--~~f~sL~~L~LS~N~Ls-~L~~L~nL~~LscnlIs~  501 (507)
                      ..|+.+++++|.+.+. +.+..+++|+.|+|++|+|+ .||.  ..+++|+.|+|++|+|+ .++.+++|++|+...+.+
T Consensus       221 ~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             ccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence            5677777887777763 45777788888888888887 5665  34567888888888875 455667777777766666


Q ss_pred             cc
Q 010557          502 KS  503 (507)
Q Consensus       502 n~  503 (507)
                      |.
T Consensus       301 N~  302 (313)
T d1ogqa_         301 NK  302 (313)
T ss_dssp             SS
T ss_pred             Cc
Confidence            53

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.69  E-value=4.8e-11  Score=109.94  Aligned_cols=118  Identities=24%  Similarity=0.305  Sum_probs=93.7

Q ss_pred             cEEEccCC--CCCCCC-CCCCCCCCCEEEccCCCCCCcCCCCCCCCCcEEECCCCCCCCCcCC-CCCCCccEEEccCCCC
Q 010557          386 AVAHIAGI--GLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL-REMTRLRVLDLSYNRI  461 (507)
Q Consensus       386 t~L~LS~N--~Lt~LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~~sL~~LdLS~NkLs~Lp~L-~~L~sL~~LdLS~N~I  461 (507)
                      +.+.+.++  .+..++ .|..|++|+.|+|++|.|+.++.....++|+.|+|++|.|+.++.+ ..++.|+.|++++|.|
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i  105 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEEC
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccc
Confidence            44555544  466676 7889999999999999999986422228999999999999999874 4456899999999999


Q ss_pred             cccCC-CCCCCCCEEEcCCCCCCCC---CCCCCCCcCCeeeCCCcc
Q 010557          462 FRIGH-GNILSKPVFWLSFKLFEFL---TIIPNCKRLSCNLYNSKS  503 (507)
Q Consensus       462 s~IP~-~~f~sL~~L~LS~N~Ls~L---~~L~nL~~LscnlIs~n~  503 (507)
                      +.++. ..+++|+.|+|++|.|..+   ..+..+.+|....+++|+
T Consensus       106 ~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         106 ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            98864 3456899999999999664   356788888888888774

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.56  E-value=5.2e-08  Score=92.91  Aligned_cols=120  Identities=18%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             cEEEccCCCCC-CCC-CCCCCCCC-CEEEccCCCCCCcCCCCCC-CCCcEEECCCCCCCC-CcC-CCCCCCccEEEccCC
Q 010557          386 AVAHIAGIGLK-AIP-TISHFSSL-RSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINT-IEG-LREMTRLRVLDLSYN  459 (507)
Q Consensus       386 t~L~LS~N~Lt-~LP-~L~~L~sL-~~LdLS~N~Is~Ipp~sf~-~sL~~LdLS~NkLs~-Lp~-L~~L~sL~~LdLS~N  459 (507)
                      +.+++++|.+. .+| .+..+..+ +.+++++|.++++.+..+. ..+..+++++|.+.+ ++. +..++.|+.|++++|
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34444444443 333 33333332 3444444444443333222 233344555444443 222 567889999999999


Q ss_pred             CCcccCC--CCCCCCCEEEcCCCCC--CCCCCCCCCCcCCeeeCCCccCC
Q 010557          460 RIFRIGH--GNILSKPVFWLSFKLF--EFLTIIPNCKRLSCNLYNSKSHS  505 (507)
Q Consensus       460 ~Is~IP~--~~f~sL~~L~LS~N~L--s~L~~L~nL~~LscnlIs~n~~~  505 (507)
                      .++..+.  ..+..|+.|+|++|+|  ..|..++++++|....+++|.+.
T Consensus       232 ~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            9885443  4467999999999999  46778999999999888888643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.9e-07  Score=82.49  Aligned_cols=109  Identities=18%  Similarity=0.115  Sum_probs=70.0

Q ss_pred             hhhhccccCCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCCCCCcC-CCCC
Q 010557          376 SVIRSLNSSSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTIEG-LREM  448 (507)
Q Consensus       376 s~l~~Lp~sLt~L~LS~N~Lt~LP---~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~-L~~L  448 (507)
                      ..+.+++ .|+.|++++|.+..++   .+..+..|..+...++.+..++...|.   ..+..|++++|+|+.++. ....
T Consensus        97 ~~~~~l~-~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~  175 (242)
T d1xwdc1          97 EAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG  175 (242)
T ss_dssp             TSEECCT-TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT
T ss_pred             ccccccc-cccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            3445554 4678888888877665   234455555556677777777776654   467778888888877653 3334


Q ss_pred             CCcc-EEEccCCCCcccCCCCC---CCCCEEEcCCCCCCCC
Q 010557          449 TRLR-VLDLSYNRIFRIGHGNI---LSKPVFWLSFKLFEFL  485 (507)
Q Consensus       449 ~sL~-~LdLS~N~Is~IP~~~f---~sL~~L~LS~N~Ls~L  485 (507)
                      ..+. .+.+.+|+|+.||...|   .+|+.|+|++|.|+.+
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            4443 34567777887776543   4777788888877543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.8e-06  Score=78.54  Aligned_cols=129  Identities=17%  Similarity=0.074  Sum_probs=90.4

Q ss_pred             hhhccccCCcEEEcc-CCCCCCCC--CCCCCCCCCEEEccCCCCCCcCCCCCC---CCCcEEECCCCCCCCCcC--CCCC
Q 010557          377 VIRSLNSSSAVAHIA-GIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP---KGLHTLNLSRNKINTIEG--LREM  448 (507)
Q Consensus       377 ~l~~Lp~sLt~L~LS-~N~Lt~LP--~L~~L~sL~~LdLS~N~Is~Ipp~sf~---~sL~~LdLS~NkLs~Lp~--L~~L  448 (507)
                      .+..++. ++.|.+. .|.+..++  .|..+++|+.|++++|.|..++...+.   ..|..+...++.+..++.  +..+
T Consensus        73 ~f~~l~~-l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~  151 (242)
T d1xwdc1          73 VFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL  151 (242)
T ss_dssp             SEESCTT-CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc
Confidence            3455543 4555554 46777555  578888888888888888877665443   455556667777877643  5555


Q ss_pred             C-CccEEEccCCCCcccCCCCCCCC--CE-EEcCCCCCCCCC--CCCCCCcCCeeeCCCccCCC
Q 010557          449 T-RLRVLDLSYNRIFRIGHGNILSK--PV-FWLSFKLFEFLT--IIPNCKRLSCNLYNSKSHSA  506 (507)
Q Consensus       449 ~-sL~~LdLS~N~Is~IP~~~f~sL--~~-L~LS~N~Ls~L~--~L~nL~~LscnlIs~n~~~~  506 (507)
                      . .+..|++++|+|+.++...|...  .. +++.+|+|..++  .+..+.+|....++.|++..
T Consensus       152 ~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             BSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             cccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc
Confidence            4 78889999999999988777643  33 456788886653  37888899998888887654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.4e-06  Score=76.90  Aligned_cols=58  Identities=17%  Similarity=0.123  Sum_probs=30.6

Q ss_pred             CCcEEEccCCCCCCCC----CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCCCCCC
Q 010557          384 SSAVAHIAGIGLKAIP----TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINT  441 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP----~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~NkLs~  441 (507)
                      .|++|++++|+|+.++    .+..+++|+.|+|++|.|+.++...+.  ..|+.|+|++|.|+.
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3566666666666543    133455666666666666655542211  345555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=7.6e-06  Score=71.98  Aligned_cols=63  Identities=29%  Similarity=0.269  Sum_probs=39.3

Q ss_pred             CCCCCCCEEEccCCCCCCcCCCC--CC--CCCcEEECCCCCCCCCcC--CCCCCCccEEEccCCCCccc
Q 010557          402 SHFSSLRSVNLSNNFIVHIPTGS--MP--KGLHTLNLSRNKINTIEG--LREMTRLRVLDLSYNRIFRI  464 (507)
Q Consensus       402 ~~L~sL~~LdLS~N~Is~Ipp~s--f~--~sL~~LdLS~NkLs~Lp~--L~~L~sL~~LdLS~N~Is~I  464 (507)
                      ..+++|++|+|++|.|+.+.+..  +.  ++|+.|+|++|.|+.++.  +.....|+.|+|++|.|+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            34667777777777777765421  11  567777777777777654  22233567777777777643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=6.9e-06  Score=79.11  Aligned_cols=82  Identities=23%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             cCCcEEEccCCCCCC-----CC-CCCCCCCCCEEEccCCCCCC-----cCCCCC-C-CCCcEEECCCCCCCCC-----c-
Q 010557          383 SSSAVAHIAGIGLKA-----IP-TISHFSSLRSVNLSNNFIVH-----IPTGSM-P-KGLHTLNLSRNKINTI-----E-  443 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~-----Ipp~sf-~-~sL~~LdLS~NkLs~L-----p-  443 (507)
                      +.+++|+|++|.|+.     |. .+..+++|+.|+|++|.|+.     +..... . .+|+.|+|++|.|+..     . 
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            457889999998873     23 46788899999999998853     111111 1 4799999999988763     2 


Q ss_pred             CCCCCCCccEEEccCCCCccc
Q 010557          444 GLREMTRLRVLDLSYNRIFRI  464 (507)
Q Consensus       444 ~L~~L~sL~~LdLS~N~Is~I  464 (507)
                      .+..+++|+.|+|++|.|+..
T Consensus       107 ~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             HTTSCTTCCEEECCSSBCHHH
T ss_pred             hhhccccccccccccccchhh
Confidence            377888899999999988753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=2.7e-05  Score=74.81  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCCcCC----CCC--CCCCcEEECCCCCCCC-----C-cCCC-C
Q 010557          384 SSAVAHIAGIGLKAIP---TISHFSSLRSVNLSNNFIVHIPT----GSM--PKGLHTLNLSRNKINT-----I-EGLR-E  447 (507)
Q Consensus       384 sLt~L~LS~N~Lt~LP---~L~~L~sL~~LdLS~N~Is~Ipp----~sf--~~sL~~LdLS~NkLs~-----L-p~L~-~  447 (507)
                      .|+.|++++|+|+...   -+..+++|+.|+|++|.|+...-    ..+  .++|+.|||++|.|+.     + ..+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            3678888888888532   45667888888888888764211    111  1578888888888864     1 1232 2


Q ss_pred             CCCccEEEccCCCCcccCC-------CCCCCCCEEEcCCCCC
Q 010557          448 MTRLRVLDLSYNRIFRIGH-------GNILSKPVFWLSFKLF  482 (507)
Q Consensus       448 L~sL~~LdLS~N~Is~IP~-------~~f~sL~~L~LS~N~L  482 (507)
                      .++|+.|+|++|.|+....       ....+|+.|+|++|.|
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            3578888888888875321       3456888888888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.21  E-value=2e-05  Score=75.67  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=17.2

Q ss_pred             CCCcEEECCCCCCCC-----C-cCCCCCCCccEEEccCCCCc
Q 010557          427 KGLHTLNLSRNKINT-----I-EGLREMTRLRVLDLSYNRIF  462 (507)
Q Consensus       427 ~sL~~LdLS~NkLs~-----L-p~L~~L~sL~~LdLS~N~Is  462 (507)
                      ++|+.|+|++|.|+.     + ..+..++.|+.|+|++|.|+
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            345555555555433     1 12444455555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.04  E-value=4.2e-05  Score=73.31  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=73.7

Q ss_pred             cCCcEEEccCCCCCC------CC-CCCCCCCCCEEEccCCCCCCcCC----CCC--CCCCcEEECCCCCCCCC--c----
Q 010557          383 SSSAVAHIAGIGLKA------IP-TISHFSSLRSVNLSNNFIVHIPT----GSM--PKGLHTLNLSRNKINTI--E----  443 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~------LP-~L~~L~sL~~LdLS~N~Is~Ipp----~sf--~~sL~~LdLS~NkLs~L--p----  443 (507)
                      ..++.|++++|.|+.      +. .+..+++|+.|+|++|.|.....    ..+  .++|+.|+|++|.|+..  .    
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            458999999999873      22 57788999999999998764211    111  16899999999999862  1    


Q ss_pred             CCC--CCCCccEEEccCCCCccc-----CC---CCCCCCCEEEcCCCCCC
Q 010557          444 GLR--EMTRLRVLDLSYNRIFRI-----GH---GNILSKPVFWLSFKLFE  483 (507)
Q Consensus       444 ~L~--~L~sL~~LdLS~N~Is~I-----P~---~~f~sL~~L~LS~N~Ls  483 (507)
                      .+.  ....|+.|+|++|.|+.-     ..   ...+.|+.|+|++|.|.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            232  246799999999998742     21   23568999999999984

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=8.9e-05  Score=70.08  Aligned_cols=56  Identities=20%  Similarity=-0.006  Sum_probs=32.3

Q ss_pred             CCCCCccEEEccCC-CCcc--cCC-CCCCCCCEEEcCC-CCC--CCCCCCCCCCcCCeeeCCC
Q 010557          446 REMTRLRVLDLSYN-RIFR--IGH-GNILSKPVFWLSF-KLF--EFLTIIPNCKRLSCNLYNS  501 (507)
Q Consensus       446 ~~L~sL~~LdLS~N-~Is~--IP~-~~f~sL~~L~LS~-N~L--s~L~~L~nL~~LscnlIs~  501 (507)
                      ..+++|+.|+|++| .|+.  +.. ..++.|+.|+|++ +.|  ..+..++++++|....+..
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            34677888888775 4552  211 3456788888877 455  2244455556665544433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.52  E-value=0.00043  Score=60.62  Aligned_cols=100  Identities=14%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             ccCCcEEEccCC-CCCC--C---C-CCCCCCCCCEEEccCCCCCCcCCCCC----C--CCCcEEECCCCCCCC--C----
Q 010557          382 NSSSAVAHIAGI-GLKA--I---P-TISHFSSLRSVNLSNNFIVHIPTGSM----P--KGLHTLNLSRNKINT--I----  442 (507)
Q Consensus       382 p~sLt~L~LS~N-~Lt~--L---P-~L~~L~sL~~LdLS~N~Is~Ipp~sf----~--~sL~~LdLS~NkLs~--L----  442 (507)
                      .+.|+.|+|+++ .++.  +   - .+...+.|+.|+|++|.|..-....+    .  +.|+.|+|++|.|+.  +    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355788999874 4662  2   1 46777889999999998875222221    1  679999999999886  2    


Q ss_pred             cCCCCCCCccEEEccCCCCcccCC----------CCCCCCCEEEcCCCC
Q 010557          443 EGLREMTRLRVLDLSYNRIFRIGH----------GNILSKPVFWLSFKL  481 (507)
Q Consensus       443 p~L~~L~sL~~LdLS~N~Is~IP~----------~~f~sL~~L~LS~N~  481 (507)
                      ..+...+.|+.|+|++|.+..+..          ..-+.|+.|+++++.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            247778889999999988776543          113467777776653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.00088  Score=62.98  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             cCCcEEEccCCCCCC--CC-CCCCCCCCCEEEccCCCCCCcCCCCCC--CCCcEEECCCC-CCCC--CcC-CCCCCCccE
Q 010557          383 SSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN-KINT--IEG-LREMTRLRV  453 (507)
Q Consensus       383 ~sLt~L~LS~N~Lt~--LP-~L~~L~sL~~LdLS~N~Is~Ipp~sf~--~sL~~LdLS~N-kLs~--Lp~-L~~L~sL~~  453 (507)
                      ..|++|++++|.++.  +. -+..+++|++|+|+++.++......+.  ++|+.|+|+++ .|+.  +.. +..+++|+.
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            358999999998873  44 578899999999999987752222222  68999999994 6764  333 456899999


Q ss_pred             EEccCC-CCcc--cCC---CCCCCCCEEEcCCC
Q 010557          454 LDLSYN-RIFR--IGH---GNILSKPVFWLSFK  480 (507)
Q Consensus       454 LdLS~N-~Is~--IP~---~~f~sL~~L~LS~N  480 (507)
                      |+|+++ .++.  +..   ...+.|+.|++++.
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccccccccccccchhhhcccccccchhhhccc
Confidence            999984 5653  211   33468999999863

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.54  E-value=0.0076  Score=52.34  Aligned_cols=81  Identities=17%  Similarity=0.086  Sum_probs=57.5

Q ss_pred             CCCCCCEEEccCC-CCCCc--CC--CCCC--CCCcEEECCCCCCCC--Cc----CCCCCCCccEEEccCCCCcccCC---
Q 010557          403 HFSSLRSVNLSNN-FIVHI--PT--GSMP--KGLHTLNLSRNKINT--IE----GLREMTRLRVLDLSYNRIFRIGH---  466 (507)
Q Consensus       403 ~L~sL~~LdLS~N-~Is~I--pp--~sf~--~sL~~LdLS~NkLs~--Lp----~L~~L~sL~~LdLS~N~Is~IP~---  466 (507)
                      ..+.|+.|+|+++ .|..-  ..  ..+.  .+|+.|+|++|.|..  +.    .+...+.|+.|+|++|.|+.-..   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999974 56541  11  1111  679999999999975  22    25667889999999999985322   


Q ss_pred             ----CCCCCCCEEEcCCCCCC
Q 010557          467 ----GNILSKPVFWLSFKLFE  483 (507)
Q Consensus       467 ----~~f~sL~~L~LS~N~Ls  483 (507)
                          ..-..|+.|+|++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence                23357999999988653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.89  E-value=0.0057  Score=52.62  Aligned_cols=99  Identities=12%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             cCCcEEEccC-CCCCC-----CC-CCCCCCCCCEEEccCCCCCCcCCCC----CC--CCCcEEECCCCCCCCC------c
Q 010557          383 SSSAVAHIAG-IGLKA-----IP-TISHFSSLRSVNLSNNFIVHIPTGS----MP--KGLHTLNLSRNKINTI------E  443 (507)
Q Consensus       383 ~sLt~L~LS~-N~Lt~-----LP-~L~~L~sL~~LdLS~N~Is~Ipp~s----f~--~sL~~LdLS~NkLs~L------p  443 (507)
                      +.|+.|++++ +.|+.     +- .+...++|+.|+|++|.|..-.-..    +.  ..|+.+++++|.+..-      .
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4578888887 45661     11 4667788888888888876522211    11  6788888888888751      2


Q ss_pred             CCCCCCCccEEEc--cCCCCcccCC-------CCCCCCCEEEcCCCC
Q 010557          444 GLREMTRLRVLDL--SYNRIFRIGH-------GNILSKPVFWLSFKL  481 (507)
Q Consensus       444 ~L~~L~sL~~LdL--S~N~Is~IP~-------~~f~sL~~L~LS~N~  481 (507)
                      .+...+.|+.+.|  ++|.|..-..       .....|+.|++..+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            4666777876555  4666653211       234467777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.55  E-value=0.027  Score=48.14  Aligned_cols=101  Identities=17%  Similarity=0.101  Sum_probs=64.7

Q ss_pred             CCCCCCCEEEccC-CCCCCcCC----CCC--CCCCcEEECCCCCCCCC------cCCCCCCCccEEEccCCCCcccCC--
Q 010557          402 SHFSSLRSVNLSN-NFIVHIPT----GSM--PKGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIFRIGH--  466 (507)
Q Consensus       402 ~~L~sL~~LdLS~-N~Is~Ipp----~sf--~~sL~~LdLS~NkLs~L------p~L~~L~sL~~LdLS~N~Is~IP~--  466 (507)
                      .+.+.|++|+|++ +.|+.-.-    ..+  ..+|+.|+|++|.|+.-      ..+...+.|+.|++++|.++.-..  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3458999999997 45654111    111  16899999999999862      136677899999999999874221  


Q ss_pred             -----CCCCCCCEEEc--CCCCCC------CCCCCCCCCcCCeeeCCCc
Q 010557          467 -----GNILSKPVFWL--SFKLFE------FLTIIPNCKRLSCNLYNSK  502 (507)
Q Consensus       467 -----~~f~sL~~L~L--S~N~Ls------~L~~L~nL~~LscnlIs~n  502 (507)
                           ...++|+.++|  +.|.+.      ....+...++|....+..+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence                 23457777665  456661      1233445556666555554