Citrus Sinensis ID: 010572
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| 255560275 | 598 | protein binding protein, putative [Ricin | 0.964 | 0.817 | 0.454 | 1e-117 | |
| 297744269 | 580 | unnamed protein product [Vitis vinifera] | 0.708 | 0.618 | 0.509 | 4e-98 | |
| 449443929 | 604 | PREDICTED: uncharacterized protein LOC10 | 0.708 | 0.594 | 0.528 | 3e-91 | |
| 356503658 | 604 | PREDICTED: uncharacterized protein LOC10 | 0.696 | 0.584 | 0.516 | 4e-91 | |
| 449475557 | 604 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.708 | 0.594 | 0.528 | 4e-91 | |
| 359480084 | 834 | PREDICTED: uncharacterized protein LOC10 | 0.644 | 0.392 | 0.508 | 9e-89 | |
| 356570694 | 625 | PREDICTED: uncharacterized protein LOC10 | 0.696 | 0.564 | 0.477 | 5e-86 | |
| 42569177 | 604 | leucine-rich repeats-ribonuclease inhibi | 0.988 | 0.829 | 0.373 | 9e-84 | |
| 297832112 | 603 | leucine-rich repeat family protein [Arab | 0.785 | 0.660 | 0.489 | 3e-80 | |
| 357154921 | 653 | PREDICTED: uncharacterized protein LOC10 | 0.642 | 0.499 | 0.416 | 2e-59 |
| >gi|255560275|ref|XP_002521155.1| protein binding protein, putative [Ricinus communis] gi|223539724|gb|EEF41306.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 273/601 (45%), Positives = 341/601 (56%), Gaps = 112/601 (18%)
Query: 14 AVKRELLLGDDVI--PYVYELPADLFDILLTCLPPLALQKLQTKMPFRD--GDDCGSP-D 68
A+KR+L+ GDDV+ +YE+P+ LF IL+T LPPLAL LQ +MP+ + G +C D
Sbjct: 3 AIKRQLISGDDVLMLAEIYEIPSHLFSILVTKLPPLALHNLQMEMPYENSNGYECSDGGD 62
Query: 69 YCFENGRKRGRYGNFNTVWKKLFKTRWSGF--TDQIEPVDWQQRYWEAHVQGCLDEAAEL 126
C + GRKRGR FNT WK LFK RW TD +E +W Q YWE H+Q CLDEAA
Sbjct: 63 GCSKIGRKRGRSCKFNTEWKTLFKLRWPQIVDTDSVESDNWHQAYWEKHLQNCLDEAAGS 122
Query: 127 VVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALC 186
++ SF G I +I + D IL +IG E +NH YSKLSYH QQ GHYARCLRLQN LC
Sbjct: 123 SMV-SFDGCIGEIKVPDYILKWIGCEGHLNHSI--YSKLSYHFQQLGHYARCLRLQNVLC 179
Query: 187 VEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK---------- 236
V ETCQLLR S+LQ+L LRWIR +EHV LC+LLIQN ETL SLEF+HCK
Sbjct: 180 VAETCQLLRNSQLQNLALRWIRSQEHVDGLCQLLIQNRETLTSLEFVHCKLSSTFVDAIC 239
Query: 237 ------------------------------LSPSFVEGIC--RSLCSKR-------KRIH 257
L PS V + RSLCS R ++
Sbjct: 240 RSLEIKDKQTHGIKNFSIRTSIFLETDLVSLPPSLVSFLSSGRSLCSLRFSGNHLDRKFA 299
Query: 258 KI---------ENLSI-DISSFI--------ENCPSSVVVELVSFLSSGRSLCSLKLRHC 299
+I N+S+ D+S I SS+V S +SL L +R+
Sbjct: 300 RILFTLLFDDSSNISVLDLSDNIIAGWLSNFNRGSSSMVPSTFGITKSLQSLRILNVRNN 359
Query: 300 HLDR-DFGRMVFSSLLEASSSLSILDLSGNSIGG---------WLSKYDRSGPLFSLG-- 347
+L + D + ++ L +L ILDL N I + +R PL L
Sbjct: 360 NLRKCDMKSLRYTLL--CMPNLDILDLGENPIEDEGIRCLIPYFTEAVERCSPLVELNLE 417
Query: 348 ------------------AGKSLQSLRLLNL---SHIAASLGKFFGTSVQVLNIGAIGLG 386
K L SL L + S IA +LGKF T ++ LNIG IGLG
Sbjct: 418 SCELSCEGVTLLLDTLSTLQKPLNSLTLADNGLGSPIAGALGKFLCTPIRELNIGGIGLG 477
Query: 387 SSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446
S+GF LQ G+ +ELKLV INISKNRGG+ETAKFL KLM LAP+LV V A YNLMP ESL
Sbjct: 478 SAGFLELQKGMMEELKLVEINISKNRGGLETAKFLLKLMSLAPDLVAVKASYNLMPAESL 537
Query: 447 TIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILILPTLQALDVPYDDE 506
T+ICS LK +KG+LQ LDLTGN W+ Q +H S+L++F+HNG PILIL ++ A +PYDD+
Sbjct: 538 TLICSGLKASKGNLQHLDLTGNTWDYQQTHASVLADFQHNGRPILILSSIHAPHIPYDDD 597
Query: 507 P 507
P
Sbjct: 598 P 598
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744269|emb|CBI37239.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 193/379 (50%), Positives = 253/379 (66%), Gaps = 20/379 (5%)
Query: 1 MVKAPSLISLAALAVKRELL---LGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMP 57
M + PSL+SL + +++L G+D+ +YELP+ LFD LL LPPL LQKLQ +MP
Sbjct: 1 MAEVPSLMSLCMKKLGKDILRDDFGNDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMP 60
Query: 58 FRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDW---------- 107
R + S + CF NGRKRG GNFNT WK LFK+RW +I+ VDW
Sbjct: 61 LRCWNGHESTNICFRNGRKRGSCGNFNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESI 120
Query: 108 ---QQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSK 164
QQ YWE H+Q C+DEAAE+ VLPSF G + +I I DTI+ I Y+ +H DYSK
Sbjct: 121 IDWQQMYWETHLQNCIDEAAEIAVLPSFDGGLGEIEIPDTIIKCIVYKGHRSHSTRDYSK 180
Query: 165 LSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNS 224
LSYHC+QFG YARCL+LQN LC+ ET LLR+S+LQ LVLRWI+ EH+ LC+LL QN+
Sbjct: 181 LSYHCEQFGSYARCLKLQNMLCIAETSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNN 240
Query: 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSF 284
ETL+SLEF+ C LS + + IC SL K + +++++ SI S+ +E P S+ LVSF
Sbjct: 241 ETLSSLEFIFCNLSSASLNAICDSLRVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSF 299
Query: 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SG 341
LSSGRSLCSLK L ++F ++VF++LL+ASS LS L+ N+I GWL +++ +
Sbjct: 300 LSSGRSLCSLKFSDNRLGKNFAKLVFNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTW 359
Query: 342 PLFSLGAGKSLQSLRLLNL 360
PL S G GKSLQ LR+LNL
Sbjct: 360 PLPSFGLGKSLQLLRVLNL 378
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443929|ref|XP_004139728.1| PREDICTED: uncharacterized protein LOC101206924 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/363 (52%), Positives = 238/363 (65%), Gaps = 4/363 (1%)
Query: 1 MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRD 60
M +APSL+SL V+ E+L DDV P +Y+LP L D L LPPLAL+ LQ+ MPF
Sbjct: 1 MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFEL 60
Query: 61 GDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCL 120
++ + C +GRKR R NFN WKK F RWS TD I+PVDWQQ YWE H+Q CL
Sbjct: 61 QNEDEYDNNCLMDGRKRRRSSNFNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCL 120
Query: 121 DEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLR 180
DEAAE+ LPSF I +I +SD+IL YI ++ ++ Y LSYHCQ+FG YA CLR
Sbjct: 121 DEAAEIASLPSFSKCIGEIEMSDSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLR 180
Query: 181 LQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPS 240
LQ+ LCV E +LR +LQ+L+LRWIRF E V LCKLL QN ETL SLE +HCKLS +
Sbjct: 181 LQSVLCVSEIYHILRSCRLQTLLLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSST 240
Query: 241 FVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300
V IC +L RK H I + SI+ S F E P ++ LVSF SSGR L S KL
Sbjct: 241 SVNSICDALIHNRK-THGILHFSINGSRFDETEPVALPSGLVSFFSSGRYLYSFKLCDND 299
Query: 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRL 357
L ++FG+ VF +LL+ASS LS+LDLS N + GWLS ++R +G S GKSLQSLR+
Sbjct: 300 LGKNFGKFVFHTLLDASSCLSVLDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRV 359
Query: 358 LNL 360
LNL
Sbjct: 360 LNL 362
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503658|ref|XP_003520623.1| PREDICTED: uncharacterized protein LOC100794405 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 186/360 (51%), Positives = 232/360 (64%), Gaps = 7/360 (1%)
Query: 5 PSLISLAALAVKRELL--LGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGD 62
PSL+S+ A+ ++LL DD++P +Y+LP+ L D L+T LPPLAL+ +PF D
Sbjct: 6 PSLLSVCIDALTQQLLRPCDDDLLPCIYDLPSHLLDTLITRLPPLALRTFHHHLPF---D 62
Query: 63 DCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDE 122
+ G RKR R N N+ W++LF+ RW QI DW+Q YWE H+Q CLDE
Sbjct: 63 EEGFSHDDSTKKRKRARDWNLNSAWQRLFQLRWPDRVKQIHRTDWEQLYWETHLQDCLDE 122
Query: 123 AAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQ 182
A E+ ++PSF G I DI ISD+IL YIG+ NH CD+SKLSYHC QFG + CL LQ
Sbjct: 123 AVEVALIPSFTGYIGDIQISDSILKYIGFVGNTNHSTCDHSKLSYHCLQFGSHVSCLGLQ 182
Query: 183 NALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV 242
N LC ET LLRE KLQSLVLR IR +E + LCKLL Q+ TL SLEF+HC LS F+
Sbjct: 183 NVLCTAETSVLLRECKLQSLVLRCIRSKEQIDGLCKLLAQHCRTLTSLEFVHCALSTDFI 242
Query: 243 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302
I SL +R + H I++LSI +SF+E C S+ LVSFLSSGRSLCSLKL H
Sbjct: 243 NAIFGSLVIERVQKHGIQHLSIIATSFLEPCTVSLPSGLVSFLSSGRSLCSLKLSENHHG 302
Query: 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR--SGPLFSLGAGKSLQSLRLLNL 360
F + +F +LL SS +S+LDLS N I GWL Y R SG S G GKSL+ LR+LNL
Sbjct: 303 WTFAKDLFVTLLNLSSGISVLDLSRNRISGWLFYYRRSLSGSHLSFGNGKSLKLLRVLNL 362
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475557|ref|XP_004154489.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227026 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/363 (52%), Positives = 238/363 (65%), Gaps = 4/363 (1%)
Query: 1 MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRD 60
M +APSL+SL V+ E+L DDV P +Y+LP L D L LPPLAL+ LQ+ MPF
Sbjct: 1 MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFEL 60
Query: 61 GDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCL 120
++ + C +GRKR R NFN WKK F RWS TD I+PVDWQQ YWE H+Q CL
Sbjct: 61 QNEDEYDNNCLMDGRKRRRSSNFNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCL 120
Query: 121 DEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLR 180
DEAAE+ LPSF I +I +SD+IL YI ++ ++ Y LSYHCQ+FG YA CLR
Sbjct: 121 DEAAEIASLPSFSKCIGEIEMSDSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLR 180
Query: 181 LQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPS 240
LQ+ LCV E +LR +LQ+L+LRWIRF E V LCKLL QN ETL SLE +HCKLS +
Sbjct: 181 LQSVLCVSEIYHILRSCRLQTLLLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSST 240
Query: 241 FVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300
V IC +L RK H I + SI+ S F E P ++ LVSF SSGR L S KL
Sbjct: 241 SVNSICDALIHNRK-THGILHFSINGSRFDETEPVALPSGLVSFXSSGRYLYSFKLCDND 299
Query: 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRL 357
L ++FG+ VF +LL+ASS LS+LDLS N + GWLS ++R +G S GKSLQSLR+
Sbjct: 300 LGKNFGKFVFHTLLDASSCLSVLDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRV 359
Query: 358 LNL 360
LNL
Sbjct: 360 LNL 362
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480084|ref|XP_002267362.2| PREDICTED: uncharacterized protein LOC100261775 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 232/354 (65%), Gaps = 27/354 (7%)
Query: 23 DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGN 82
+D+ +YELP+ LFD LL LPPL LQKLQ +MP R + S + CF NGRKRG GN
Sbjct: 81 NDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMPLRCWNGHESTNICFRNGRKRGSCGN 140
Query: 83 FNTVWKKLFKTRWSGFTDQIEPVDW-------------QQRYWEAHVQGCLDEAAELVVL 129
FNT WK LFK+RW +I+ VDW QQ YWE H+Q C+DEAAE+ VL
Sbjct: 141 FNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESIIDWQQMYWETHLQNCIDEAAEIAVL 200
Query: 130 PSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEE 189
PSF G + +I I +H DYSKLSYHC+QFG YARCL+LQN LC+ E
Sbjct: 201 PSFDGGLGEIEIPG----------HRSHSTRDYSKLSYHCEQFGSYARCLKLQNMLCIAE 250
Query: 190 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 249
T LLR+S+LQ LVLRWI+ EH+ LC+LL QN+ETL+SLEF+ C LS + + IC SL
Sbjct: 251 TSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNNETLSSLEFIFCNLSSASLNAICDSL 310
Query: 250 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 309
K + +++++ SI S+ +E P S+ LVSFLSSGRSLCSLK L ++F ++V
Sbjct: 311 RVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSFLSSGRSLCSLKFSDNRLGKNFAKLV 369
Query: 310 FSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNL 360
F++LL+ASS LS L+ N+I GWL +++ + PL S G GKSLQ LR+LNL
Sbjct: 370 FNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTWPLPSFGLGKSLQLLRVLNL 423
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570694|ref|XP_003553520.1| PREDICTED: uncharacterized protein LOC100817679 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 182/381 (47%), Positives = 231/381 (60%), Gaps = 28/381 (7%)
Query: 5 PSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTK-MPFRDGDD 63
PSLISL A+ ++ L D +P +Y+LP+ L L+T LPP AL+ +PF D+
Sbjct: 6 PSLISLCIDALAQQFLRPSDDLPSIYDLPSHLLHTLITRLPPFALRTFHRHHLPF---DE 62
Query: 64 CGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEA 123
G RKR R N ++ W++LF RW QI+P DW+Q YWE H+Q CLDEA
Sbjct: 63 EGFSRDDSTKKRKRARDWNLSSAWQRLFLLRWPDRVKQIQPTDWEQHYWEIHLQDCLDEA 122
Query: 124 AELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQN 183
AE+ ++PSF G I DI ISD+IL YIG+ +H +CD+SKLSYHC QFG + CL LQN
Sbjct: 123 AEVALIPSFSGYIGDIQISDSILKYIGFVGNTSHSSCDHSKLSYHCLQFGSHVSCLMLQN 182
Query: 184 ALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE 243
LC ET LLRE KLQSLVLR IR +E + LCKLL Q+ L SLEF+HC LS F+
Sbjct: 183 VLCTAETSVLLRECKLQSLVLRCIRSKEQIDGLCKLLAQHCRMLTSLEFVHCTLSTDFIN 242
Query: 244 GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG--------------- 288
I SL +R + H I++LSI +SF+E C S+ L+SFLSSG
Sbjct: 243 AIFGSLVIERVQKHGIQHLSIIATSFLEPCAVSLPSGLMSFLSSGRYMSIIAFLSVEYLP 302
Query: 289 ------RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR--- 339
RSLCSLKL R F + +F +LL SS +S+LDLS N I GWLS ++R
Sbjct: 303 YATAATRSLCSLKLSDNQHGRTFAKDLFVTLLNLSSGISVLDLSENRIAGWLSDFNRRFL 362
Query: 340 SGPLFSLGAGKSLQSLRLLNL 360
SG S G GKSL+ LR+LNL
Sbjct: 363 SGSHMSFGNGKSLKLLRVLNL 383
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42569177|ref|NP_179611.2| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] gi|330251888|gb|AEC06982.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 228/610 (37%), Positives = 302/610 (49%), Gaps = 109/610 (17%)
Query: 1 MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPF-- 58
M KAPSL L ++K +LL D+ IP +YELP++L D ++ LP LALQK QT MPF
Sbjct: 1 MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHC 60
Query: 59 ----RDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWE 113
GDDC C GRKR R + WK LFK RW F D++E P DWQQ YWE
Sbjct: 61 LDSYESGDDC-----CLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWE 115
Query: 114 AHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQF 172
H+Q C+DEAAE+ + P+F G I IN+SD IL YI +E+ M C +LS+H Q F
Sbjct: 116 KHLQNCVDEAAEVALRPTFSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTF 175
Query: 173 GHYARCLRLQNALCV--------------------------EETCQLLRESK--LQSLVL 204
G Y RCLRL N LCV E C+LL +S+ L SL L
Sbjct: 176 GPYLRCLRLLNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLEL 235
Query: 205 RWIRFE-EHVQALCKLL----------------------------------IQNSETLAS 229
+ + A+C L + + TL S
Sbjct: 236 IHCKLSLSSISAICTSLHEKGIHTTGMQRFCIKTSSIEIDPLAAPSAFVSFLMSVRTLHS 295
Query: 230 LEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGR 289
L F L F + +L + ++ +IS ++ VV +S S +
Sbjct: 296 LHFGDSNLDRYFARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQ 355
Query: 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW----LSKYDRSGP--- 342
SLC L LR LDR + +LL L LDLSGN I L Y P
Sbjct: 356 SLCKLNLRGNELDRYDAENLAHALLHMPG-LESLDLSGNPIEDSGIRSLISYFTKNPDSR 414
Query: 343 ----------LFSLGAGKSLQSLRLLNL-------------SHIAASLGKFFGTSVQVLN 379
L G + L +L +L S +A ++ F S++ LN
Sbjct: 415 LADLNLENCELSCCGVIEFLDTLSMLEKPLKFLSVADNALGSEVAEAVVNSFTISIESLN 474
Query: 380 IGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438
I IGLG GF L + K KL++INISKNRGG+ETA+FLSKL+PLAP+L+ ++A Y
Sbjct: 475 IMGIGLGPLGFLALGRKLEKVSKKLLSINISKNRGGLETARFLSKLIPLAPKLISIDASY 534
Query: 439 NLMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVSMLSEFRHNGLPILILPTLQ 497
NLMP E+L ++C +L+ AKG L+RLD+TGN+ + H S+L EF+HNG PI +LP+
Sbjct: 535 NLMPPEALLMLCDSLRTAKGDLKRLDMTGNSCISHEADHSSLLHEFQHNGEPIFVLPSSS 594
Query: 498 ALDVPYDDEP 507
VPYDD+P
Sbjct: 595 VSHVPYDDDP 604
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297832112|ref|XP_002883938.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297329778|gb|EFH60197.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 202/413 (48%), Positives = 252/413 (61%), Gaps = 15/413 (3%)
Query: 1 MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRD 60
M KAPSL L ++K +LL D+ IP +YELP++L D ++ LP LALQ QT MPF
Sbjct: 1 MTKAPSLAFLCIQSLKLQLLDSDNPIPDLYELPSELLDAVIAHLPALALQNFQTNMPFNC 60
Query: 61 GDDCGSPDYCFENGRKRG-RYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQG 118
DD S D C NGRKR R + WK LFK RW F D++E P DWQQ YWE H+Q
Sbjct: 61 LDDYESGDDCLINGRKRSSRNDPLGSSWKMLFKLRWPDFVDRVESPADWQQLYWEKHLQN 120
Query: 119 CLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARC 178
C+DEAAE+ + P+F G I IN+SD IL YI +E+ M+ C +LS+H Q FG Y RC
Sbjct: 121 CVDEAAEVALRPTFSGRIRSINVSDNILRYICHEEHMSCQKCVCKELSFHFQTFGPYLRC 180
Query: 179 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS 238
LRL N LCV ET +LL SKLQSLVLRWIR E+HV+ LCKLLIQ +TL SLEF+HCKLS
Sbjct: 181 LRLLNVLCVTETSELLMTSKLQSLVLRWIRSEKHVEPLCKLLIQTRDTLTSLEFIHCKLS 240
Query: 239 PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH 298
S + IC SL K ++ I SS IE P + VSFL S R+L SL
Sbjct: 241 SSSISAICASLHEKGIHTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFCD 299
Query: 299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358
+LDR RMVFS+LL++SS+LS LDLS N+I GWLS + + SL +GK LQSL L
Sbjct: 300 SNLDRHIARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCRSVVGSLSSGKFLQSLCKL 359
Query: 359 NL----------SHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKEL 401
NL ++A +L G ++ L++ + SG R L TK L
Sbjct: 360 NLRGNELDRYDAENLAHALLHMPG--LESLDLSGNPIEDSGIRSLISYFTKNL 410
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357154921|ref|XP_003576947.1| PREDICTED: uncharacterized protein LOC100822893 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/341 (41%), Positives = 192/341 (56%), Gaps = 15/341 (4%)
Query: 32 LPADLFDILLTCLPPLALQKLQTKMPFRDGDDC------GSPDYCFENGRKRGRYGNFNT 85
LP +L L L P AL+ L R G D G KR R +FNT
Sbjct: 75 LPWELLHQLAPRLSPFALESLHDAAHARCCSSASTTVRFGGLDGGNRRGIKRSRCEDFNT 134
Query: 86 VWKKLFKTRW--SGFTDQIE--PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINI 141
W+ LFK RW T Q VDWQQ+YWE H+Q CLDEAAE +LPSFRG I ++ I
Sbjct: 135 TWQALFKCRWPLDDCTGQANFVTVDWQQQYWEKHLQECLDEAAEAALLPSFRGSIDELII 194
Query: 142 SDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQS 201
S I++ + ++ YS+LSYHC + G+Y R LRLQN LC E C +L+ S+L++
Sbjct: 195 SAKIMSSVYLSADISQ---QYSRLSYHCTRLGYYVRRLRLQNVLCTVEICSMLQHSRLET 251
Query: 202 LVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIEN 261
LV I E V +C LL +++TL SLEF+HC+L P ++ IC SLC + + H+I+
Sbjct: 252 LVFIRIISEAEVNGVCLLLSCHAKTLVSLEFIHCQLYPVVMDKICSSLCQQGSQNHEIQR 311
Query: 262 LSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS 321
LSI S E+ PS++ L++FLS +SL L L + F +++ +LL++S L
Sbjct: 312 LSIKSSRVCESNPSTISAGLLNFLSHAKSLQLLSLNDAKMQPSFAKIIIHTLLKSSCGLQ 371
Query: 322 ILDLSGNSIGGWLSKYDRSGPLFS--LGAGKSLQSLRLLNL 360
LD+S N I GWLS DRS FS L + SL SL +L L
Sbjct: 372 TLDISENDIAGWLSTVDRSCTSFSSELESNTSLSSLTVLKL 412
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| TAIR|locus:2039027 | 604 | AT2G20210 "AT2G20210" [Arabido | 0.911 | 0.764 | 0.404 | 4.8e-78 | |
| UNIPROTKB|Q86W25 | 1043 | NLRP13 "NACHT, LRR and PYD dom | 0.209 | 0.101 | 0.260 | 0.00081 |
| TAIR|locus:2039027 AT2G20210 "AT2G20210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 195/482 (40%), Positives = 257/482 (53%)
Query: 1 MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFR- 59
M KAPSL L ++K +LL D+ IP +YELP++L D ++ LP LALQK QT MPF
Sbjct: 1 MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHC 60
Query: 60 -DGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQ 117
D + G D C GRKR R + WK LFK RW F D++E P DWQQ YWE H+Q
Sbjct: 61 LDSYESGD-DCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQ 119
Query: 118 GCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQFGHYA 176
C+DEAAE+ + P+F G I IN+SD IL YI +E+ M C +LS+H Q FG Y
Sbjct: 120 NCVDEAAEVALRPTFSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYL 179
Query: 177 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK 236
RCLRL N LCV ET +LLR SKL+SLVLRWIR E+HV+ LCKLLIQ+ ETL SLE +HCK
Sbjct: 180 RCLRLLNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCK 239
Query: 237 LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPXXXXXXXXXXXXXGRSLCSLKL 296
LS S + IC SL K ++ I SS IE P R+L SL
Sbjct: 240 LSLSSISAICTSLHEKGIHTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHF 298
Query: 297 RHCHLDRDFGRMVFXXXXXXXXXXXXXXXXXXXIGGWLSKYDRSGPLFSLGAGKSLQSLR 356
+LDR F RMVF I GWLS + + SL +GKSLQSL
Sbjct: 299 GDSNLDRYFARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLC 358
Query: 357 LLNLS------HIAASLGK--FFGTSVQVLNIGAIGLGSSGFRVLQDGVTK--ELKLVNI 406
LNL + A +L ++ L++ + SG R L TK + +L ++
Sbjct: 359 KLNLRGNELDRYDAENLAHALLHMPGLESLDLSGNPIEDSGIRSLISYFTKNPDSRLADL 418
Query: 407 NISK-NRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDL 465
N+ +FL L L L ++ N + E + ++ ++ ++ L++
Sbjct: 419 NLENCELSCCGVIEFLDTLSMLEKPLKFLSVADNALGSEVAEAVVNSFTIS---IESLNI 475
Query: 466 TG 467
G
Sbjct: 476 MG 477
|
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| UNIPROTKB|Q86W25 NLRP13 "NACHT, LRR and PYD domains-containing protein 13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 89 (36.4 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 151 YEQQMNHLACDYSKLSYHCQQFGHYARCLRLQ-NALCVEETCQLLRESKLQSLVLRWIRF 209
+E +N L + + S C + LRL ++ +E ++L SK S + W
Sbjct: 659 FEVDLNILEDEELQASSFCLKHCKRLNKLRLSVSSHILERDLEILETSKFDSRMHAW--- 715
Query: 210 EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSI 264
++C L+ N E L L+ + KL S V+G+C +L + R ++ K+ S+
Sbjct: 716 ----NSICSTLVTN-ENLHELDLSNSKLHASSVKGLCLALKNPRCKVQKLTCKSV 765
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | AT2G20210 | leucine-rich repeat family protein; leucine-rich repeat family protein; FUNCTIONS IN- protein binding; LOCATED IN- endomembrane system; EXPRESSED IN- 12 plant structures; EXPRESSED DURING- 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Leucine-rich repeat (InterPro-IPR001611), Leucine-rich repeat, ribonuclease inhibitor subtype (InterPro-IPR003590); Has 1691 Blast hits to 1352 proteins in 107 species- Archae - 0; Bacteria - 100; Metazoa - 1035; Fungi - 8; Plants - 127; Viruses - 0; [...] (604 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 507 | |||
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-06 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 27/191 (14%)
Query: 279 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338
++ L SL LKL + L R++ L + +L L L N + G
Sbjct: 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG------ 151
Query: 339 RSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVT 398
+L K+L++ R L + LN+ G+G +G R L +G+
Sbjct: 152 --ASCEALA--KALRANRDL-----------------KELNLANNGIGDAGIRALAEGLK 190
Query: 399 KELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKG 458
L ++++ N E A L++ + L +N G N + + SAL
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250
Query: 459 HLQRLDLTGNN 469
L L L+ N+
Sbjct: 251 SLLTLSLSCND 261
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LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.85 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.85 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.85 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.84 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.71 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.56 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 99.54 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 99.5 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.46 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.2 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.19 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.19 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.68 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.66 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.65 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.64 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.63 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.58 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.56 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.55 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.54 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.34 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.27 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.25 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.14 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.1 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.03 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.97 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.89 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 97.69 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.64 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 97.53 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.51 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.47 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.44 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.36 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.26 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.24 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 97.2 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 97.2 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.16 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.13 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.07 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.97 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.61 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.6 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 96.44 | |
| KOG3735 | 353 | consensus Tropomodulin and leiomodulin [Cytoskelet | 96.36 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.34 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.33 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.31 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.2 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 96.16 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.08 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 95.82 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.81 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.79 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 95.59 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.55 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.09 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 94.82 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 94.52 | |
| KOG3735 | 353 | consensus Tropomodulin and leiomodulin [Cytoskelet | 94.24 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 92.4 | |
| PF06881 | 109 | Elongin_A: RNA polymerase II transcription factor | 92.27 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 91.84 | |
| KOG3926 | 332 | consensus F-box proteins [Amino acid transport and | 91.77 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 91.67 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 91.46 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 90.05 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 87.56 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 86.57 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 86.03 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 85.81 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 84.32 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 83.64 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 83.26 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 83.23 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 82.39 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 82.29 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 82.2 |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-21 Score=190.20 Aligned_cols=263 Identities=18% Similarity=0.192 Sum_probs=135.3
Q ss_pred HHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHH---HHHHHhCCCC
Q 010572 214 QALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE---LVSFLSSGRS 290 (507)
Q Consensus 214 ~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~---L~~~L~~~~s 290 (507)
+.+.+.+ ....++++++|++|.|+.++++.++..|++.+ .+..-.++. -|+.--...++.. +.++|..++.
T Consensus 20 ~~v~~~~-~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~----~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 20 KDVEEEL-EPMDSLTKLDLSGNTFGTEAARAIAKVLASKK----ELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred hhHHHHh-cccCceEEEeccCCchhHHHHHHHHHHHhhcc----cceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 3334433 34467777777777777777777777766542 122211111 1111111112221 4556666777
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-c-----ccCCchhhcccCCCcCccccccch---
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-Y-----DRSGPLFSLGAGKSLQSLRLLNLS--- 361 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~-----~~~~l~~~L~~~~~L~~L~ll~l~--- 361 (507)
|++||||+|.++..|++.+..-+ .+...|+.|.|.+|+++..... + .+- .....++-..|+.+...+|+
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELA-VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred eeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-HHhccCCCcceEEEEeecccccc
Confidence 77777777777777777665544 3457777777777777721110 0 000 00012223334444444444
Q ss_pred hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 362 HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 362 ~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
.++.+++..++ .+|+++.++.|+|.+.|...++.++..+++|++|||.+|.++.+|...|+.+++..+.|++|+++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 34444444444 3555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
.+.++|+..+.+|++...++|+.|+|.+|. |+.+++..++.....
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe--It~da~~~la~~~~e 296 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNE--ITRDAALALAACMAE 296 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcch--hHHHHHHHHHHHHhc
Confidence 555555555555555444455555555554 244444444433333
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=188.42 Aligned_cols=278 Identities=18% Similarity=0.197 Sum_probs=213.4
Q ss_pred cCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCC---h---hHHHHHHHHhccCCcccccccceeccccc
Q 010572 196 ESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLS---P---SFVEGICRSLCSKRKRIHKIENLSIDISS 268 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls---~---~~~~~L~~~L~~~~~~~~~l~~L~l~~~~ 268 (507)
...+++++|++|.+ .+..+.+++.+. +.+.|++.++++...+ + +++..+..+|...+ .++.++++.|.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~----~L~~ldLSDNA 103 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLA-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP----KLQKLDLSDNA 103 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHh-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC----ceeEeeccccc
Confidence 44678888887754 344455677765 4468888888876433 2 23344455554321 57788877766
Q ss_pred cccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhcc--------CCCCccEEECcCCCCCCcccccccC
Q 010572 269 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE--------ASSSLSILDLSGNSIGGWLSKYDRS 340 (507)
Q Consensus 269 ~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~--------~~~~L~~LdLS~N~L~~~l~~~~~~ 340 (507)
|.. +....+..+|+++.+|++|.|+||.|+..|...++.+|.+ .-+.|++++..+|.+....+.
T Consensus 104 ~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~---- 175 (382)
T KOG1909|consen 104 FGP----KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT---- 175 (382)
T ss_pred cCc----cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH----
Confidence 532 1224567788888899999999999999988888776632 337888899999988853322
Q ss_pred CchhhcccCCCcCccccccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh
Q 010572 341 GPLFSLGAGKSLQSLRLLNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV 415 (507)
Q Consensus 341 ~l~~~L~~~~~L~~L~ll~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~ 415 (507)
.++.++...+.|+.++...|+ .+..++..++. ++|++|||++|.++.+|..+|+++|+..+.|++|+++++.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 234467777788888887776 56666777666 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC-CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 416 ETAKFLSKLMPL-APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 416 ~g~~~L~~~L~~-n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
+|+..+.++++. +|+|+.|++++|.|+.+|+..++.++.. .+.|++|+|++|.++.++++...++..-...
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLGEKDEGIDEIASKFDTA 327 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccccccchhHHHHHHhcccc
Confidence 999999988765 5789999999999999999999988876 6799999999999987888888887766443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=181.08 Aligned_cols=273 Identities=22% Similarity=0.204 Sum_probs=174.3
Q ss_pred CcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCC--hhHHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 198 KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLS--PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 198 ~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls--~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
.|++|+++++.. +.++..++..+. ..++|++|+++++.++ +..+..+...+... ..++.|+++.+.+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~--- 95 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG----CGLQELDLSDNALGP--- 95 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc----CceeEEEccCCCCCh---
Confidence 366777766543 333444444432 4466777777777776 45555554444431 346677766555421
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
..+..+...... ++|++|++++|.+++.++..++..+....++|++|+|++|.|++.... .+...+..+..|++
T Consensus 96 -~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~----~~~~~~~~~~~L~~ 169 (319)
T cd00116 96 -DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE----ALAKALRANRDLKE 169 (319)
T ss_pred -hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH----HHHHHHHhCCCcCE
Confidence 112223333333 667888888887777777666666543226778888888877742110 01123444555666
Q ss_pred cccccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCC-C
Q 010572 355 LRLLNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPL-A 428 (507)
Q Consensus 355 L~ll~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~-n 428 (507)
|.+.++. .+...++.++. ++|++|+|++|.+++.+...++..+..+.+|++|++++|.+++.+...++..+.. +
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 6665554 23344444443 6788888888888888888888888878888888888888888777777765543 4
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 429 PELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 429 ~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
+.|++|++++|.++++|+..+.+++... .+|+.+++++|.+ ++++++.+++..+..
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l--~~~~~~~~~~~~~~~ 305 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKF--GEEGAQLLAESLLEP 305 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCC--cHHHHHHHHHHHhhc
Confidence 5688888888888888888888887765 6788888888885 777777776555543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=181.58 Aligned_cols=237 Identities=20% Similarity=0.229 Sum_probs=160.4
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|++|+++++.........+..+..+ ++|++|++++|.+++.++..+...+... ...++.|+++.+.+..
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~l~~---- 151 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNRLEG---- 151 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC---CCCceEEEcCCCcCCc----
Confidence 4456666666554332222223333333 4566666666666665555555444332 0135555555544321
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
.....+...+..+++|++|+|++|.+++.+...++.++... ++|++|+|++|.|++
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~----------------------- 207 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTD----------------------- 207 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccCh-----------------------
Confidence 01112344455556666666666666666655555555333 566666666666553
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcC-CCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMPLAPELV 432 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~ 432 (507)
.+...++..+. .+|++|++++|.+++.+...++..+.. +..|++|++++|.+++.+...+.+.+...++|+
T Consensus 208 ------~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 208 ------EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred ------HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 23334444443 789999999999999999999987764 678999999999999999999999998889999
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 433 EVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 433 ~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+++++|.++++|++.++.+++.+.+.|+.||+.+|.|
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999999999999999999999888999999999875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-17 Score=191.15 Aligned_cols=303 Identities=19% Similarity=0.180 Sum_probs=174.4
Q ss_pred hhhhhhhhhhhhhhhccCCcccccchhhhhccchhhcccccccccccccceecccCceeEEEEeccCcchhhhh-hhhcc
Q 010572 118 GCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETC-QLLRE 196 (507)
Q Consensus 118 ~cl~E~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~~~-~ll~~ 196 (507)
+|+....|++++..|+.++.+ |...+.+|+ ...+||.| -++.|... ++|+.|+|....-.+.+. .+...
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~w~-~~~~~c~w-----~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l 92 (968)
T PLN00113 23 FSMLHAEELELLLSFKSSIND---PLKYLSNWN-SSADVCLW-----QGITCNNS-SRVVSIDLSGKNISGKISSAIFRL 92 (968)
T ss_pred ccCCCHHHHHHHHHHHHhCCC---CcccCCCCC-CCCCCCcC-----cceecCCC-CcEEEEEecCCCccccCChHHhCC
Confidence 455556899999999998876 767788895 34589999 37888753 479999997532122222 34456
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..|+.|+|+++.....+ -..+..++.+|++|+|++|.+++..+... ...++.|+++.+.+..
T Consensus 93 ~~L~~L~Ls~n~~~~~i---p~~~~~~l~~L~~L~Ls~n~l~~~~p~~~----------l~~L~~L~Ls~n~~~~----- 154 (968)
T PLN00113 93 PYIQTINLSNNQLSGPI---PDDIFTTSSSLRYLNLSNNNFTGSIPRGS----------IPNLETLDLSNNMLSG----- 154 (968)
T ss_pred CCCCEEECCCCccCCcC---ChHHhccCCCCCEEECcCCccccccCccc----------cCCCCEEECcCCcccc-----
Confidence 78999999987543221 12233466889999999998876544211 1246666666554321
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-cc------------cC---
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-YD------------RS--- 340 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~~------------~~--- 340 (507)
.+...+..+++|++|+|++|.+.......+ ...++|++|+|++|.+++.++. +. +.
T Consensus 155 ---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 155 ---EIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-----TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred ---cCChHHhcCCCCCEEECccCcccccCChhh-----hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 122334556666666666666654433322 2235666666666666543321 00 00
Q ss_pred CchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHH
Q 010572 341 GPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETA 418 (507)
Q Consensus 341 ~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~ 418 (507)
.+...++...+|++|.+.++. ..+.++..+. ++|++|+|++|.+.... ...+....+|++|+|++|.++...+
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPI----PPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccC----chhHhhccCcCEEECcCCeeccCCC
Confidence 000123334444444444432 2222333333 56677777766664321 1223334567777777777765544
Q ss_pred HHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 419 KFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 419 ~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+. ..++|+.|++++|.+....... +.. ..+|+.|+|++|.+
T Consensus 302 ~~~~----~l~~L~~L~l~~n~~~~~~~~~----~~~-l~~L~~L~L~~n~l 344 (968)
T PLN00113 302 ELVI----QLQNLEILHLFSNNFTGKIPVA----LTS-LPRLQVLQLWSNKF 344 (968)
T ss_pred hhHc----CCCCCcEEECCCCccCCcCChh----Hhc-CCCCCEEECcCCCC
Confidence 4333 3467888888888876543322 222 25688888888886
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=141.45 Aligned_cols=274 Identities=15% Similarity=0.199 Sum_probs=182.9
Q ss_pred hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHH---HHHHHh
Q 010572 210 EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE---LVSFLS 286 (507)
Q Consensus 210 ~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~---L~~~L~ 286 (507)
..+.++....+.. +..++++|||+|.|+.+++..||..+.... .+..-.++. -|+....-.+... +..+|.
T Consensus 16 ~eDvk~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~----~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLl 89 (388)
T COG5238 16 KEDVKGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVR----NLRVVNFSD-AFTGRDKDELYSNLVMLLKALL 89 (388)
T ss_pred cchhhHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhc----ceeEeehhh-hhhcccHHHHHHHHHHHHHHHh
Confidence 3466666666654 578999999999999999999998876532 111111111 1111111112222 467788
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCccc-ccccC--Cchh--hcccCCCcCccccccch
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS-KYDRS--GPLF--SLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~-~~~~~--~l~~--~L~~~~~L~~L~ll~l~ 361 (507)
.||.|+..+||+|.++.+....+.+.+- ..+.|..|.|++|+++.... ++... .++. -..+.+.|++.....|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 8999999999999999999988887664 45899999999999983211 00000 0000 12233446666666665
Q ss_pred --hHHHH-HHhhhc--CCCcEEEeccCCCCchhHHHHHH-hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 362 --HIAAS-LGKFFG--TSVQVLNIGAIGLGSSGFRVLQD-GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 362 --~~~~~-L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~-aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.|... .+..+. ..|+++.+..|+|.++|+..|+- ++....+|++|||.+|.++-.|...|+.++...+.|++|+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 22222 233333 47889999999999999877664 5666788999999999999999999999998888889999
Q ss_pred ccCCCCChhHHHHHHHHHhcC-CCCccEEEecCCCCC-----------CCccHHHHHHHHHHcCCCe
Q 010572 436 AGYNLMPLESLTIICSALKVA-KGHLQRLDLTGNNWE-----------LQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~-~~~L~~LdL~~N~~~-----------~~~~~~~~l~~~~~~~~~i 490 (507)
+..|.++.+|+...-.+...- .++|..|-+..|... ...+.++.|..++.||.-|
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 999999999988777666442 356777777666541 1234455666666666554
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-15 Score=160.74 Aligned_cols=280 Identities=19% Similarity=0.145 Sum_probs=223.9
Q ss_pred cCeeeccccc-ChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 199 LQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 199 L~~L~Ls~~~-~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
+..|.|.++. .+.+++.++.++.++ .+|+.|+|++|.++++++..++..++.+. +.++.|.+..+.....++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~~l~~~l~~~~---~~l~~L~l~~c~l~~~g~--- 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGARLLCEGLRLPQ---CLLQTLELVSCSLTSEGA--- 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHHHHHhhcccch---HHHHHHHhhcccccccch---
Confidence 4555665553 345777788888655 79999999999999999999999999873 356667666555433222
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhcc---CCCCccEEECcCCCCCCcccccccCCchhhcccCCC-cC
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS-LQ 353 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~---~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~-L~ 353 (507)
..++..|.++.+++.+|++.|.+...|...++.++.. +.+++++|.|++|.++. ..|..+..++....+ +.
T Consensus 162 -~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~----~~c~~l~~~l~~~~~~~~ 236 (478)
T KOG4308|consen 162 -APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS----SSCALLDEVLASGESLLR 236 (478)
T ss_pred -HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh----HHHHHHHHHHhccchhhH
Confidence 2367788889999999999999999999999999986 77999999999999995 345555567766665 55
Q ss_pred ccccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhh---
Q 010572 354 SLRLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKL--- 424 (507)
Q Consensus 354 ~L~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~--- 424 (507)
.|++..|. .++..+...+. +++++++++.|.|++.|+..+++.+.....++.|.+++|.+++.++..+.+.
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~ 316 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALER 316 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhh
Confidence 56666665 56778877775 6899999999999999999999999888899999999999999877665211
Q ss_pred --------------------------------------------------------------------------------
Q 010572 425 -------------------------------------------------------------------------------- 424 (507)
Q Consensus 425 -------------------------------------------------------------------------------- 424 (507)
T Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 396 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRL 396 (478)
T ss_pred cccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHh
Confidence
Q ss_pred ---CCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCeEEc
Q 010572 425 ---MPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILIL 493 (507)
Q Consensus 425 ---L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i~~~ 493 (507)
+..++.+.+++++.|...+++...+.+..+.+. .++.++++.|.+ ...+...+.+..+.++.|..+
T Consensus 397 ~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 465 (478)
T KOG4308|consen 397 AAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPI--TALGTEELQRALALNPGILAI 465 (478)
T ss_pred hhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChh--hhcchHHHHHHHhcCCCccee
Confidence 123667899999999999999999999999987 899999999984 777788888888888777544
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-15 Score=157.20 Aligned_cols=255 Identities=19% Similarity=0.189 Sum_probs=186.6
Q ss_pred CCccEEEeecCCCChhH---HHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCC
Q 010572 225 ETLASLEFLHCKLSPSF---VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~---~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L 301 (507)
+.++++.+.++..++.. ....+..+..+......+..+++..|.+.+- -...+++++..+++|..|+|+.|.+
T Consensus 52 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~----~~~~l~~~l~t~~~L~~L~l~~n~l 127 (478)
T KOG4308|consen 52 TTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDR----GAEELAQALKTLPTLGQLDLSGNNL 127 (478)
T ss_pred cchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccc----hHHHHHHHhcccccHhHhhcccCCC
Confidence 46677777777777666 2223344443321000144555554443221 1234788899999999999999999
Q ss_pred CchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch---hHHHHHHhhh------c
Q 010572 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGKFF------G 372 (507)
Q Consensus 302 ~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~---~~~~~L~~~l------~ 372 (507)
++.|++.++.++..+.|.+++|++..|.+++. .+..+...+..+..++.+.+..|. .+...+++++ .
T Consensus 128 ~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~----g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~ 203 (478)
T KOG4308|consen 128 GDEGARLLCEGLRLPQCLLQTLELVSCSLTSE----GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPL 203 (478)
T ss_pred ccHhHHHHHhhcccchHHHHHHHhhccccccc----chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhccc
Confidence 99999999999988778999999999999863 333445566666667666666554 2333333332 2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCC-CCEEeccCCCCChHHHHHHHhhCCCC-CCccEEEccCCCCChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELK-LVNINISKNRGGVETAKFLSKLMPLA-PELVEVNAGYNLMPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~-L~~LdLs~N~i~~~g~~~L~~~L~~n-~~L~~L~Ls~N~l~~~g~~~L~ 450 (507)
++++.|+|..|.+++.+|..++.++..... ++.|+++.|.+++.|++.+...+... +++++++++.|.|++.|+..++
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 788999999999999999999999988766 88899999999999999999888776 6789999999999999999999
Q ss_pred HHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 451 SALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
+.+.... .++.|.++.|.+ ++.++..+.+..+...+.
T Consensus 284 ~~l~~~~-~l~~l~l~~n~l--~~~~~~~~~~~l~~~~~~ 320 (478)
T KOG4308|consen 284 EVLVSCR-QLEELSLSNNPL--TDYGVELLLEALERKTPL 320 (478)
T ss_pred HHHhhhH-HHHHhhcccCcc--ccHHHHHHHHHhhhcccc
Confidence 9888764 899999999885 777777776666665555
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=160.13 Aligned_cols=235 Identities=19% Similarity=0.140 Sum_probs=105.8
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..|++|+++++.... ..+.-++++.+|++|+|++|.+.+..+..+.. + ..++.|+++.|.+..
T Consensus 140 ~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l-------~~L~~L~L~~n~l~~----- 202 (968)
T PLN00113 140 PNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-L-------TSLEFLTLASNQLVG----- 202 (968)
T ss_pred CCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhh-C-------cCCCeeeccCCCCcC-----
Confidence 456666666553221 11222345566666666666665444433311 1 234555554443211
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-cc-cC--------------
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-YD-RS-------------- 340 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~~-~~-------------- 340 (507)
.+...+..+++|++|+|++|.+.+.....+ ...++|++|+|++|.+++.++. +. ..
T Consensus 203 ---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 203 ---QIPRELGQMKSLKWIYLGYNNLSGEIPYEI-----GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ---cCChHHcCcCCccEEECcCCccCCcCChhH-----hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 112234445555555555555554433322 1235555555555555443221 00 00
Q ss_pred CchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHH
Q 010572 341 GPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETA 418 (507)
Q Consensus 341 ~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~ 418 (507)
.+...+....+|++|.+.++. ..+.++..+. .+|+.|++++|.++... ...+....+|++|+|++|.++...+
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGKI----PVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred cCchhHhhccCcCEEECcCCe-eccCCChhHcCCCCCcEEECCCCccCCcC----ChhHhcCCCCCEEECcCCCCcCcCC
Confidence 000022233334444443332 1122222222 45666666666554321 1223334456666666666654444
Q ss_pred HHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 419 KFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 419 ~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+. ..++|+.|++++|.+.......++ . ..+|+.|++++|.+
T Consensus 350 ~~l~----~~~~L~~L~Ls~n~l~~~~p~~~~----~-~~~L~~L~l~~n~l 392 (968)
T PLN00113 350 KNLG----KHNNLTVLDLSTNNLTGEIPEGLC----S-SGNLFKLILFSNSL 392 (968)
T ss_pred hHHh----CCCCCcEEECCCCeeEeeCChhHh----C-cCCCCEEECcCCEe
Confidence 3332 235667777777766543222222 1 24577777777765
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-12 Score=138.44 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=35.4
Q ss_pred CceeEEEEeccCc-chhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCCh
Q 010572 173 GHYARCLRLQNAL-CVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP 239 (507)
Q Consensus 173 ~~~v~~L~L~~~l-~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~ 239 (507)
.+|+..|.|+.-+ .+....++.....|++||||.|.... ++ -+.+ ..-.++++|+|++|.++.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~--~~sf-p~~~ni~~L~La~N~It~ 187 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE-IP--KPSF-PAKVNIKKLNLASNRITT 187 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc-cc--CCCC-CCCCCceEEeeccccccc
Confidence 4578999998533 22222244445567888888773211 00 0011 111478888888888764
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-11 Score=131.27 Aligned_cols=41 Identities=32% Similarity=0.285 Sum_probs=26.7
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
.+..+|..|.|++|.++.-..+. ++..+.|+.|||..|.|.
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~-----Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRS-----FKRLPKLESLDLNRNRIR 234 (873)
T ss_pred cccchheeeecccCcccccCHHH-----hhhcchhhhhhcccccee
Confidence 34447777777777776655543 234577777777777765
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.2e-11 Score=115.14 Aligned_cols=197 Identities=19% Similarity=0.186 Sum_probs=118.7
Q ss_pred HHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-c--ccCCchhhcccCCCcCcccc
Q 010572 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-Y--DRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 281 L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~--~~~~l~~~L~~~~~L~~L~l 357 (507)
....+....++++++||+|-++.+.++.+|..+.. -.+|+...+|.-..+ .... + +-..+..++..|+.|...++
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~-~~~L~vvnfsd~ftg-r~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN-VRNLRVVNFSDAFTG-RDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhh-hcceeEeehhhhhhc-ccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 34556667888888888888888888888877743 366666666644332 1100 0 00112235666777777777
Q ss_pred ccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhc---CC------CCCCEEeccCCCCChHHHHHHHh
Q 010572 358 LNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVT---KE------LKLVNINISKNRGGVETAKFLSK 423 (507)
Q Consensus 358 l~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~---~n------~~L~~LdLs~N~i~~~g~~~L~~ 423 (507)
.+|. .....|..+++ +.|.+|.|++|++|+.+...|++||. .| +.|++.+.+.|++..-.++..+.
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 7775 34445555555 66788888888888777777776642 12 23777777777766555555555
Q ss_pred hCCCCCCccEEEccCCCCChhHHHHHH-HHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 424 LMPLAPELVEVNAGYNLMPLESLTIIC-SALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 424 ~L~~n~~L~~L~Ls~N~l~~~g~~~L~-~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
.+....+|+++.+.+|.|.++|+..|+ ..+.- ..+|+.|||..|.| +-.|...|+.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtf--t~~gS~~La~ 236 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTF--TLEGSRYLAD 236 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccch--hhhhHHHHHH
Confidence 555555666666666666666666554 22222 23566666666664 4444444433
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-11 Score=128.76 Aligned_cols=178 Identities=18% Similarity=0.178 Sum_probs=107.3
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
..+++.|-+||||+|.|..-.+.+ .....|++|+||+|.+.- +-+...+++++|.++..+.-.
T Consensus 146 finLtDLLfLDLS~NrLe~LPPQ~------RRL~~LqtL~Ls~NPL~h-----------fQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLEMLPPQI------RRLSMLQTLKLSNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred HHhhHhHhhhccccchhhhcCHHH------HHHhhhhhhhcCCChhhH-----------HHHhcCccchhhhhhhccccc
Confidence 345566777777777775544432 123667788888887752 134556667777776665211
Q ss_pred ---HHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 365 ---ASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 365 ---~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
..++..+. .+|..+|||.|.+.- +.+++-...+|+.||||+|.|+.-.+ ......+|++||||.|
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSRN 278 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceeeeec-----cHHHHhhhhhhccccc
Confidence 22223332 678888999988863 44556667789999999999875321 1112246899999999
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCC---CCCccHHHHH--HHHHHcCCCeEEcCC
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNW---ELQPSHVSML--SEFRHNGLPILILPT 495 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~---~~~~~~~~~l--~~~~~~~~~i~~~~~ 495 (507)
+++.-- .|+-. -++|++|.+..|.+ +|++.+.++. ..|...+..+-.+|-
T Consensus 279 QLt~LP-----~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE 333 (1255)
T KOG0444|consen 279 QLTVLP-----DAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE 333 (1255)
T ss_pred hhccch-----HHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch
Confidence 987311 11211 13577777777776 4566555543 555555444444443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-09 Score=114.99 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=79.8
Q ss_pred CCCcEEEeccCCCCchhHHHHHHh----------------hcC-----CCCCCEEeccCCCCChHHHHHHHhhCCCCCCc
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDG----------------VTK-----ELKLVNINISKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~a----------------L~~-----n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.+|++|+|..|.|.+---..++.. ++. ...|+.|.+.+|.+++.....|- ..+.|
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~----~~~hL 385 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV----NFKHL 385 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc----cccce
Confidence 778999999999876433322211 110 11288899999999998776664 34689
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHH--HHHHHHHcCCCeEEcCCC
Q 010572 432 VEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVS--MLSEFRHNGLPILILPTL 496 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~--~l~~~~~~~~~i~~~~~~ 496 (507)
+.|+|++|.|+.--.. .++ +-..|++|+|+||.+ .+++..+. .|.-+.+++..|++.|-.
T Consensus 386 KVLhLsyNrL~~fpas----~~~-kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPAS----KLR-KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred eeeeecccccccCCHH----HHh-chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence 9999999988732221 222 235689999999998 45555544 678888999899888843
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-08 Score=109.90 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=61.6
Q ss_pred CcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC
Q 010572 351 SLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE 430 (507)
Q Consensus 351 ~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~ 430 (507)
+|+.|.+.+|. + ..++..+..+|+.|+|++|.|+.. ...++ .+|++|+|++|.++.- +..+. +.
T Consensus 326 sL~~L~Ls~N~-L-t~LP~~l~~sL~~L~Ls~N~L~~L-----P~~lp--~~L~~LdLs~N~Lt~L-P~~l~------~s 389 (754)
T PRK15370 326 GLKTLEAGENA-L-TSLPASLPPELQVLDVSKNQITVL-----PETLP--PTITTLDVSRNALTNL-PENLP------AA 389 (754)
T ss_pred cceeccccCCc-c-ccCChhhcCcccEEECCCCCCCcC-----Chhhc--CCcCEEECCCCcCCCC-CHhHH------HH
Confidence 45666655553 1 113333346889999999888642 22232 4689999999988632 22221 24
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 431 LVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 431 L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+.|++++|.|..-- ..+...+ ....++..|+|.+|.+
T Consensus 390 L~~LdLs~N~L~~LP-~sl~~~~-~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 390 LQIMQASRNNLVRLP-ESLPHFR-GEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHhhccCCcccCc-hhHHHHh-hcCCCccEEEeeCCCc
Confidence 888899999886311 1122222 2235788999999997
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=107.10 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=17.3
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
+|+.|+|++|+|..-.. ..++|+.|+|++|.|++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---------~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---------LPPGLQELSVSDNQLAS 316 (788)
T ss_pred hcCEEECcCCccccccc---------cccccceeECCCCcccc
Confidence 45556666665543211 11456666666665553
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.3e-08 Score=95.43 Aligned_cols=200 Identities=19% Similarity=0.191 Sum_probs=130.3
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC-CCCc
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDR 303 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N-~L~~ 303 (507)
..|++||||...++...+..+++. ..+++.|++.++++- ..++..+..|.+|..||||.+ +++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~-------C~kLk~lSlEg~~Ld--------D~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQ-------CSKLKNLSLEGLRLD--------DPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHH-------HHhhhhccccccccC--------cHHHHHHhccccceeeccccccccch
Confidence 468999999998887777666432 235677776665532 246777888999999999874 5777
Q ss_pred hHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccC
Q 010572 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAI 383 (507)
Q Consensus 304 ~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n 383 (507)
.+++.+ +.+.+.|.+|+||+|.++... +.++...++.+|..|||+++
T Consensus 250 n~~~ll----~~scs~L~~LNlsWc~l~~~~-----------------------------Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 250 NALQLL----LSSCSRLDELNLSWCFLFTEK-----------------------------VTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hHHHHH----HHhhhhHhhcCchHhhccchh-----------------------------hhHHHhhhchhhhhhhhhhh
Confidence 777654 345678899999998887421 12233444577888888876
Q ss_pred C--CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCc
Q 010572 384 G--LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHL 460 (507)
Q Consensus 384 ~--l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L 460 (507)
. ++.. .++-.......|.+||||+|. +++..+..+- +.+.|++|.++.+-.=+.- .+-+ +. ..++|
T Consensus 297 rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~----kf~~L~~lSlsRCY~i~p~--~~~~-l~-s~psl 365 (419)
T KOG2120|consen 297 RRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF----KFNYLQHLSLSRCYDIIPE--TLLE-LN-SKPSL 365 (419)
T ss_pred Hhhhhhh---HHHHHHHhCCceeeeccccccccCchHHHHHH----hcchheeeehhhhcCCChH--Heee-ec-cCcce
Confidence 5 3332 444444567789999999864 6664444443 3367999999977653321 1111 22 24689
Q ss_pred cEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 461 QRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 461 ~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
.+||..|+- ++....++.+...+
T Consensus 366 ~yLdv~g~v---sdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 366 VYLDVFGCV---SDTTMELLKEMLSH 388 (419)
T ss_pred EEEEecccc---CchHHHHHHHhCcc
Confidence 999998874 55556666665554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-08 Score=108.74 Aligned_cols=127 Identities=21% Similarity=0.206 Sum_probs=76.6
Q ss_pred CCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhh
Q 010572 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV 397 (507)
Q Consensus 318 ~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL 397 (507)
.+|+.|+|++|.|++ ++. . ..+|+.|.+.+|. +. .++.. ...|+.|+|++|.|+.... +
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~--------l---p~~L~~L~Ls~N~-L~-~LP~l-~~~L~~LdLs~N~Lt~LP~------l 400 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPT--------L---PSELYKLWAYNNR-LT-SLPAL-PSGLKELIVSGNRLTSLPV------L 400 (788)
T ss_pred cccceEecCCCccCC-CCC--------C---Ccccceehhhccc-cc-cCccc-ccccceEEecCCcccCCCC------c
Confidence 467888888888774 111 0 1234455554443 11 12221 2578999999999874221 1
Q ss_pred cCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHH
Q 010572 398 TKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHV 477 (507)
Q Consensus 398 ~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~ 477 (507)
..+|+.|++++|.++.- +. . ..+|+.|++++|.|+. |.+.+.. ..+|+.|+|++|.+ .....
T Consensus 401 --~s~L~~LdLS~N~LssI-P~----l---~~~L~~L~Ls~NqLt~-----LP~sl~~-L~~L~~LdLs~N~L--s~~~~ 462 (788)
T PRK15387 401 --PSELKELMVSGNRLTSL-PM----L---PSGLLSLSVYRNQLTR-----LPESLIH-LSSETTVNLEGNPL--SERTL 462 (788)
T ss_pred --ccCCCEEEccCCcCCCC-Cc----c---hhhhhhhhhccCcccc-----cChHHhh-ccCCCeEECCCCCC--CchHH
Confidence 24699999999998631 11 1 1358889999999983 2233332 25799999999997 44444
Q ss_pred HHHHHH
Q 010572 478 SMLSEF 483 (507)
Q Consensus 478 ~~l~~~ 483 (507)
..+.+.
T Consensus 463 ~~L~~l 468 (788)
T PRK15387 463 QALREI 468 (788)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-09 Score=111.92 Aligned_cols=251 Identities=21% Similarity=0.228 Sum_probs=124.9
Q ss_pred hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccccccc
Q 010572 192 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 271 (507)
Q Consensus 192 ~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le 271 (507)
.+.....|+.||||.|. ....-..+ ...+++-.|+||+|++. .++..++-.|. .+-.|+++.+++ +
T Consensus 98 diF~l~dLt~lDLShNq----L~EvP~~L-E~AKn~iVLNLS~N~Ie-tIPn~lfinLt-------DLLfLDLS~NrL-e 163 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQ----LREVPTNL-EYAKNSIVLNLSYNNIE-TIPNSLFINLT-------DLLFLDLSNNRL-E 163 (1255)
T ss_pred hhcccccceeeecchhh----hhhcchhh-hhhcCcEEEEcccCccc-cCCchHHHhhH-------hHhhhccccchh-h
Confidence 45667788889998873 32222222 34478889999998874 34444544432 233455554442 2
Q ss_pred CCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEE-------------------------ECc
Q 010572 272 NCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSIL-------------------------DLS 326 (507)
Q Consensus 272 ~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~L-------------------------dLS 326 (507)
.+++. +..+..|+.|+||+|.|.-.-.+.+ ...++|+.| |||
T Consensus 164 ----~LPPQ----~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 164 ----MLPPQ----IRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred ----hcCHH----HHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 12333 2334456666677666654444332 112444444 444
Q ss_pred CCCCCCcccccccCCchhhcccCCCcCccccccch--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCC
Q 010572 327 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV 404 (507)
Q Consensus 327 ~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~ 404 (507)
.|++.-. + ..+-...+|..|.+.+|. .+...... =.+|+.|+||.|+++. |..++....+|+
T Consensus 231 ~N~Lp~v-P--------ecly~l~~LrrLNLS~N~iteL~~~~~~--W~~lEtLNlSrNQLt~-----LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 231 ENNLPIV-P--------ECLYKLRNLRRLNLSGNKITELNMTEGE--WENLETLNLSRNQLTV-----LPDAVCKLTKLT 294 (1255)
T ss_pred ccCCCcc-h--------HHHhhhhhhheeccCcCceeeeeccHHH--Hhhhhhhccccchhcc-----chHHHhhhHHHH
Confidence 4444310 0 012222223333232222 00000000 0345555555555542 333344444566
Q ss_pred EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC--hhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 405 NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP--LESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 405 ~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~--~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
.|.+.+|.++-+|. .+.+.+...|+++.+++|.+. ++| || . ...|++|.|+.|++=-=+++.-+|.+
T Consensus 295 kLy~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LElVPEg---lc----R-C~kL~kL~L~~NrLiTLPeaIHlL~~ 363 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLELVPEG---LC----R-CVKLQKLKLDHNRLITLPEAIHLLPD 363 (1255)
T ss_pred HHHhccCcccccCC---ccchhhhhhhHHHHhhccccccCchh---hh----h-hHHHHHhcccccceeechhhhhhcCC
Confidence 66666666555442 122333345777777777765 344 22 1 24799999999998223455556655
Q ss_pred HH----HcCCCeEEcCCC
Q 010572 483 FR----HNGLPILILPTL 496 (507)
Q Consensus 483 ~~----~~~~~i~~~~~~ 496 (507)
++ ++||.+|.+|-.
T Consensus 364 l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred cceeeccCCcCccCCCCc
Confidence 43 456677554443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-08 Score=105.00 Aligned_cols=203 Identities=17% Similarity=0.127 Sum_probs=107.6
Q ss_pred HHHHHHhcccCc---ccCCCC---CCcHHHHHHHHHHhhhhhhhhhhhhhhhhccCCcccccchhhhhccchhhcccccc
Q 010572 86 VWKKLFKTRWSG---FTDQIE---PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLA 159 (507)
Q Consensus 86 ~w~~~~~~~w~~---~~~~~~---~~~w~~~~~e~hl~~cl~E~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~~ 159 (507)
.|+|-|++|-|. +.+++- |.|..+.|-||.+++==+|+-+ +.+....+...| -+|.. .-..
T Consensus 49 dgk~YF~~q~P~GGSFik~~kV~~p~d~~~t~~ery~e~~s~~sd~-~~~~si~nK~vE---------~iGfD---ki~a 115 (505)
T KOG3207|consen 49 DGKRYFQTQHPNGGSFIKPGKVKFPTDLLRTFKERYYEKYSYSSDL-ESVLSISNKQVE---------FIGFD---KIAA 115 (505)
T ss_pred cceeeeeeecCCCccccCCccCCCCccHHHHHHHHHHHhhcCCcch-hhHhhhcCceeE---------EecHH---HHHH
Confidence 499999999999 788874 9999999999987765554333 222222111111 11111 0000
Q ss_pred cccccccceecccCceeEEEEeccCc--chhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCC
Q 010572 160 CDYSKLSYHCQQFGHYARCLRLQNAL--CVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKL 237 (507)
Q Consensus 160 ~~l~~l~~~c~~~~~~v~~L~L~~~l--~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~l 237 (507)
...++. .++.+.|++.- +.+.........+++.|||+.|.+. .|..++.. ...+++|+.|+|+.|.+
T Consensus 116 --------kQsn~k-kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i-~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 116 --------KQSNLK-KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKI-AEQLPSLENLNLSSNRL 184 (505)
T ss_pred --------HhhhHH-hhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHH-HHhcccchhcccccccc
Confidence 001111 25666666522 2221111223457889999988653 44455543 35678999999999875
Q ss_pred ChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCC
Q 010572 238 SPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS 317 (507)
Q Consensus 238 s~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~ 317 (507)
.--.-...-..+ ..++.|.+++|.+. .+++...+...|+|++|+|..|. +.+.+.... ...
T Consensus 185 ~~~~~s~~~~~l-------~~lK~L~l~~CGls-------~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~---~i~ 245 (505)
T KOG3207|consen 185 SNFISSNTTLLL-------SHLKQLVLNSCGLS-------WKDVQWILLTFPSLEVLYLEANE--IILIKATST---KIL 245 (505)
T ss_pred cCCccccchhhh-------hhhheEEeccCCCC-------HHHHHHHHHhCCcHHHhhhhccc--ccceecchh---hhh
Confidence 411110000001 11344444444431 23455566677777777777774 222211111 224
Q ss_pred CCccEEECcCCCCC
Q 010572 318 SSLSILDLSGNSIG 331 (507)
Q Consensus 318 ~~L~~LdLS~N~L~ 331 (507)
+.|++|||++|++-
T Consensus 246 ~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 246 QTLQELDLSNNNLI 259 (505)
T ss_pred hHHhhccccCCccc
Confidence 67777777777765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=106.53 Aligned_cols=201 Identities=21% Similarity=0.255 Sum_probs=123.3
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
.++.|++++|.... +-..+. .+|++|+|++|.|+. .+..+. ..++.|.++.|.+.+ +
T Consensus 200 ~L~~L~Ls~N~Lts----LP~~l~---~nL~~L~Ls~N~Lts-LP~~l~----------~~L~~L~Ls~N~L~~-----L 256 (754)
T PRK15370 200 QITTLILDNNELKS----LPENLQ---GNIKTLYANSNQLTS-IPATLP----------DTIQEMELSINRITE-----L 256 (754)
T ss_pred CCcEEEecCCCCCc----CChhhc---cCCCEEECCCCcccc-CChhhh----------ccccEEECcCCccCc-----C
Confidence 57888888874332 211121 479999999998863 222211 136677777666432 3
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccc
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~l 357 (507)
+..+ .++|+.|+|++|+|..- .. .+ ..+|+.|+|++|.|+..-. .+. .+|+.|.+
T Consensus 257 P~~l------~s~L~~L~Ls~N~L~~L-P~----~l---~~sL~~L~Ls~N~Lt~LP~---------~lp--~sL~~L~L 311 (754)
T PRK15370 257 PERL------PSALQSLDLFHNKISCL-PE----NL---PEELRYLSVYDNSIRTLPA---------HLP--SGITHLNV 311 (754)
T ss_pred ChhH------hCCCCEEECcCCccCcc-cc----cc---CCCCcEEECCCCccccCcc---------cch--hhHHHHHh
Confidence 3332 14799999999998742 11 12 2579999999999885211 111 23555555
Q ss_pred ccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEcc
Q 010572 358 LNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAG 437 (507)
Q Consensus 358 l~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls 437 (507)
.+|. +. .++..+..+|+.|++++|.++.. ...++ .+|+.|+|++|.++. .+..+ .++|+.|+|+
T Consensus 312 s~N~-Lt-~LP~~l~~sL~~L~Ls~N~Lt~L-----P~~l~--~sL~~L~Ls~N~L~~-LP~~l------p~~L~~LdLs 375 (754)
T PRK15370 312 QSNS-LT-ALPETLPPGLKTLEAGENALTSL-----PASLP--PELQVLDVSKNQITV-LPETL------PPTITTLDVS 375 (754)
T ss_pred cCCc-cc-cCCccccccceeccccCCccccC-----Chhhc--CcccEEECCCCCCCc-CChhh------cCCcCEEECC
Confidence 5553 11 12222336799999999988743 22233 579999999999863 11111 1479999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 438 YNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 438 ~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|.|..-- ..+. ..|+.|++++|.+
T Consensus 376 ~N~Lt~LP-----~~l~---~sL~~LdLs~N~L 400 (754)
T PRK15370 376 RNALTNLP-----ENLP---AALQIMQASRNNL 400 (754)
T ss_pred CCcCCCCC-----HhHH---HHHHHHhhccCCc
Confidence 99987421 1121 2588899999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-08 Score=112.10 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHHHH
Q 010572 428 APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVSML 480 (507)
Q Consensus 428 n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~~l 480 (507)
.+.|+.+|+|.|+|+.-.+. +++. ..+||+|||+||.. ....+-.+.+
T Consensus 451 l~qL~~lDlS~N~L~~~~l~---~~~p--~p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLP---EALP--SPNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred cCcceEEecccchhhhhhhh---hhCC--CcccceeeccCCcccccchhhhHHh
Confidence 46799999999999864433 4443 36899999999985 3343334443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-07 Score=91.78 Aligned_cols=194 Identities=20% Similarity=0.191 Sum_probs=117.1
Q ss_pred CccEEEeecCCCChhHHHHHHHH----hccCC-------c------ccccccceeccccccccCCCCcchH-HHHHHHhC
Q 010572 226 TLASLEFLHCKLSPSFVEGICRS----LCSKR-------K------RIHKIENLSIDISSFIENCPSSVVV-ELVSFLSS 287 (507)
Q Consensus 226 ~L~~LdLs~~~ls~~~~~~L~~~----L~~~~-------~------~~~~l~~L~l~~~~~le~~~~~l~~-~L~~~L~~ 287 (507)
.=+.||+.+-.+.+.+..++.+. ++-+. . -...+|+++++.. .++. .+...|+.
T Consensus 137 lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s--------~it~stl~~iLs~ 208 (419)
T KOG2120|consen 137 LWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNS--------VITVSTLHGILSQ 208 (419)
T ss_pred ceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchh--------heeHHHHHHHHHH
Confidence 45778888888887777666432 11110 0 0112344443322 2222 24455677
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCC-CCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N-~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
++.|+.|.|-+++|+|..+.-++ ++ .+|+.|+||.| +|+.. +++.
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iA----kN-~~L~~lnlsm~sG~t~n-----------------------------~~~l 254 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIA----KN-SNLVRLNLSMCSGFTEN-----------------------------ALQL 254 (419)
T ss_pred HHhhhhccccccccCcHHHHHHh----cc-ccceeeccccccccchh-----------------------------HHHH
Confidence 77777777777777776654443 33 77777777755 34421 1111
Q ss_pred HHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC--CChHHHHHHHhhCCCCCCccEEEccCCCC-
Q 010572 367 LGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR--GGVETAKFLSKLMPLAPELVEVNAGYNLM- 441 (507)
Q Consensus 367 L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~--i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l- 441 (507)
.+. +.|++|||++|.+..+-+..+...+ ..+|+.||||+.. +++. .++-+-+.+|+|.+||||.|..
T Consensus 255 ---l~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 255 ---LLSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred ---HHHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeecccccccc
Confidence 111 5689999999999877665544333 4679999999874 5444 4445556789999999997654
Q ss_pred ChhHHHHHHHHHhcCCCCccEEEecCCCCCCCcc
Q 010572 442 PLESLTIICSALKVAKGHLQRLDLTGNNWELQPS 475 (507)
Q Consensus 442 ~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~ 475 (507)
.+ ++. .++.+- ..|++|.|+.|+- +.++
T Consensus 327 ~~-~~~---~~~~kf-~~L~~lSlsRCY~-i~p~ 354 (419)
T KOG2120|consen 327 KN-DCF---QEFFKF-NYLQHLSLSRCYD-IIPE 354 (419)
T ss_pred Cc-hHH---HHHHhc-chheeeehhhhcC-CChH
Confidence 55 433 233322 3699999999874 6654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-07 Score=93.67 Aligned_cols=45 Identities=36% Similarity=0.347 Sum_probs=36.5
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
+..++..++|..|||.+|++..-..++ | + ..+|+.||+|+|.|++
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~-c--l---LrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEI-C--L---LRSLERLDLSNNDISS 289 (565)
T ss_pred HHHhcccccceeeeccccccccCchHH-H--H---hhhhhhhcccCCcccc
Confidence 445778999999999999998876653 2 2 2679999999999995
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.8e-08 Score=99.07 Aligned_cols=111 Identities=21% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCcCeeecccccCh-hhHHHHHHHHhhCCCCccEEEeecCCCChh-HHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 197 SKLQSLVLRWIRFE-EHVQALCKLLIQNSETLASLEFLHCKLSPS-FVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~-~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~-~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
.+|+...|.+.... .+.+ .....+++++.||||.|-|... .+-.+++-|. .++.|.++.|.+.....
T Consensus 121 kkL~~IsLdn~~V~~~~~~----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-------~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-------SLENLNLSSNRLSNFIS 189 (505)
T ss_pred HhhhheeecCccccccchh----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-------cchhcccccccccCCcc
Confidence 45666666654321 1111 2234568899999999987653 3445566554 36777777776532111
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~ 329 (507)
...+ ...++||.|.|+.|+|+...+..+.. ..++|+.|+|+.|.
T Consensus 190 s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~----~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 190 SNTT-------LLLSHLKQLVLNSCGLSWKDVQWILL----TFPSLEVLYLEANE 233 (505)
T ss_pred ccch-------hhhhhhheEEeccCCCCHHHHHHHHH----hCCcHHHhhhhccc
Confidence 1111 14678889999999998887766643 35889999998885
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-06 Score=101.66 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=30.9
Q ss_pred eeEEEEeccCcchhhhh-hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHH
Q 010572 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV 242 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~-~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~ 242 (507)
.++.|++....- ..++ ......+|++|+|+++..-... +. +..+++|++|+|++|..-.+.+
T Consensus 612 ~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~i----p~-ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 612 NLVKLQMQGSKL-EKLWDGVHSLTGLRNIDLRGSKNLKEI----PD-LSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred CCcEEECcCccc-cccccccccCCCCCEEECCCCCCcCcC----Cc-cccCCcccEEEecCCCCccccc
Confidence 567777754111 1111 1223456788888754211111 11 1345678888888776443333
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.10 E-value=7e-06 Score=98.16 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=52.3
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|++..... ..+.+-.....|++|+++++....-+.+ +..+.+|++|+|+++..-...+. +.
T Consensus 590 ~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip~-ls-------- 654 (1153)
T PLN03210 590 KLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIPD-LS-------- 654 (1153)
T ss_pred ccEEEEecCCCC-CCCCCcCCccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCCc-cc--------
Confidence 367777764221 1111112346789999987743322222 24678999999998753222221 10
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 299 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N 299 (507)
....++.|.+++|..+. .+...+..+++|+.|++++|
T Consensus 655 ~l~~Le~L~L~~c~~L~--------~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 655 MATNLETLKLSDCSSLV--------ELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cCCcccEEEecCCCCcc--------ccchhhhccCCCCEEeCCCC
Confidence 01346666665543211 12233455556666666654
|
syringae 6; Provisional |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.6e-06 Score=86.46 Aligned_cols=149 Identities=20% Similarity=0.149 Sum_probs=86.1
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
.-+-|++||||+|.+....-. . +-.+.++.|++|+|+|.... .++..
T Consensus 282 TWq~LtelDLS~N~I~~iDES-----v-KL~Pkir~L~lS~N~i~~v~----------nLa~L----------------- 328 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-----V-KLAPKLRRLILSQNRIRTVQ----------NLAEL----------------- 328 (490)
T ss_pred hHhhhhhccccccchhhhhhh-----h-hhccceeEEeccccceeeeh----------hhhhc-----------------
Confidence 345689999999998654321 1 12489999999999987310 11111
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh-hH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL-ES 445 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~-~g 445 (507)
.+|++||||+|.++..-.- -...-++++|+|+.|.|.+ |+ .+...-+|..||++.|+|.. +.
T Consensus 329 ------~~L~~LDLS~N~Ls~~~Gw-----h~KLGNIKtL~La~N~iE~-----LS-GL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 329 ------PQLQLLDLSGNLLAECVGW-----HLKLGNIKTLKLAQNKIET-----LS-GLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred ------ccceEeecccchhHhhhhh-----HhhhcCEeeeehhhhhHhh-----hh-hhHhhhhheeccccccchhhHHH
Confidence 4567777777766542111 1122346777777776643 21 12222357777777777753 33
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCCC-CCccHHHHHHHHHHcCCCe
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNWE-LQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~~-~~~~~~~~l~~~~~~~~~i 490 (507)
++.|. +-+-|+.+.|.+|++. +.+--.++|+.|.+.-..|
T Consensus 392 V~~IG-----~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~ 432 (490)
T KOG1259|consen 392 VNHIG-----NLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEI 432 (490)
T ss_pred hcccc-----cccHHHHHhhcCCCccccchHHHHHHHHHhhhhhhe
Confidence 33222 1123777777777773 4445566777777765444
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-06 Score=80.06 Aligned_cols=133 Identities=20% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
+...+++|+|++|.|..- +.+ -....+|+.||||+|.|+..- . +. .
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L----~~~l~~L~~L~Ls~N~I~~l~----------~------l~------------~ 62 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENL----GATLDKLEVLDLSNNQITKLE----------G------LP------------G 62 (175)
T ss_dssp ---------------------S------TT-TT--EEE-TTS--S--T----------T---------------------
T ss_pred cccccccccccccccccc--cch----hhhhcCCCEEECCCCCCcccc----------C------cc------------C
Confidence 345789999999999763 222 223478999999999998410 0 00 0
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
+ ..|++|++++|.|++.+. .+.. ..+.|++|+|++|+|.+-+. + ..++..++|++|+|.+|++.+..-
T Consensus 63 L-----~~L~~L~L~~N~I~~i~~-~l~~---~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 63 L-----PRLKTLDLSNNRISSISE-GLDK---NLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp ------TT--EEE--SS---S-CH-HHHH---H-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGGGSTT
T ss_pred h-----hhhhhcccCCCCCCcccc-chHH---hCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcccchhh
Confidence 1 568899999999987642 2222 24579999999999866321 1 234456889999999999976432
Q ss_pred HHHHHHHhcCCCCccEEEecC
Q 010572 447 TIICSALKVAKGHLQRLDLTG 467 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~ 467 (507)
-.. .++.. -++|+.||-..
T Consensus 131 YR~-~vi~~-lP~Lk~LD~~~ 149 (175)
T PF14580_consen 131 YRL-FVIYK-LPSLKVLDGQD 149 (175)
T ss_dssp HHH-HHHHH--TT-SEETTEE
T ss_pred HHH-HHHHH-cChhheeCCEE
Confidence 211 12222 25799997543
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.9e-06 Score=77.28 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|||++|+|.... .++....|++|++++|.|+.-+.. +... .|+|++|+|++|.|.+-+- + ..
T Consensus 42 ~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~i~~~-l~~~---lp~L~~L~L~~N~I~~l~~--l-~~ 108 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISSISEG-LDKN---LPNLQELYLSNNKISDLNE--L-EP 108 (175)
T ss_dssp TT--EEE-TTS--S--T------T----TT--EEE--SS---S-CHH-HHHH----TT--EEE-TTS---SCCC--C-GG
T ss_pred cCCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCccccc-hHHh---CCcCCEEECcCCcCCChHH--h-HH
Confidence 46899999999998632 366678899999999999875432 3222 3789999999999976331 1 23
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
|... ++|+.|+|.+|++
T Consensus 109 L~~l-~~L~~L~L~~NPv 125 (175)
T PF14580_consen 109 LSSL-PKLRVLSLEGNPV 125 (175)
T ss_dssp GGG--TT--EEE-TT-GG
T ss_pred HHcC-CCcceeeccCCcc
Confidence 4433 6899999999997
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-06 Score=87.67 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=102.3
Q ss_pred HHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC-----ccccc-----------ccCCchh
Q 010572 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG-----WLSKY-----------DRSGPLF 344 (507)
Q Consensus 281 L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~-----~l~~~-----------~~~~l~~ 344 (507)
...++..+++|..|.|.+|.+.. +|++-......++.+-+..|.+-. |.+.+ -|.....
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 45678889999999999888743 555444556778888888887441 22110 0000000
Q ss_pred -------hcccCCC---cCccc----cccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec
Q 010572 345 -------SLGAGKS---LQSLR----LLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 408 (507)
Q Consensus 345 -------~L~~~~~---L~~L~----ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL 408 (507)
.+...+. ++.+. .-+......+ ++++. .+|++|+|++|+|+..--..+. ....++.|.|
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP-~~cf~~L~~L~~lnlsnN~i~~i~~~aFe----~~a~l~eL~L 305 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP-AKCFKKLPNLRKLNLSNNKITRIEDGAFE----GAAELQELYL 305 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh-HHHHhhcccceEeccCCCccchhhhhhhc----chhhhhhhhc
Confidence 0000000 11110 0000000000 12233 7889999999998754333332 3346888888
Q ss_pred cCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 409 SKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 409 s~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
..|+|....-+++ .....|+.|+|.+|+|+--.. -|+. +..+|.+|+|-+|.|.-.-..+.+-.=+.+++
T Consensus 306 ~~N~l~~v~~~~f----~~ls~L~tL~L~~N~it~~~~----~aF~-~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 306 TRNKLEFVSSGMF----QGLSGLKTLSLYDNQITTVAP----GAFQ-TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred CcchHHHHHHHhh----hccccceeeeecCCeeEEEec----cccc-ccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 8988855443333 233569999999999985321 1233 23578999999999833333333333334443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.6e-06 Score=89.33 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=38.9
Q ss_pred CCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 399 KELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 399 ~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...+|.+|||.+|++..- +.-++. .++|..||+|+|.|+.-- ..|. +. +|+.|-|.||++
T Consensus 250 ~L~~l~vLDLRdNklke~-Pde~cl----LrsL~rLDlSNN~is~Lp-----~sLg-nl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKEV-PDEICL----LRSLERLDLSNNDISSLP-----YSLG-NL-HLKFLALEGNPL 309 (565)
T ss_pred ccccceeeeccccccccC-chHHHH----hhhhhhhcccCCccccCC-----cccc-cc-eeeehhhcCCch
Confidence 345688888888887542 112221 146888899998887422 1232 22 788899999987
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=75.50 Aligned_cols=185 Identities=18% Similarity=0.144 Sum_probs=119.4
Q ss_pred CCCCCCEEEccC-CCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcc-cCCCcCccccccch---
Q 010572 287 SGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG-AGKSLQSLRLLNLS--- 361 (507)
Q Consensus 287 ~~~sL~~L~LS~-N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~-~~~~L~~L~ll~l~--- 361 (507)
.+.-+..+||-+ |.++|+++..++.. ...|+.|+.+++...+... -.+|+ .+.+|+.|.+..-+
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~----c~~lq~l~~s~~t~~~d~~-------l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACG----CHALQVLCYSSCTDITDEV-------LWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhh----hhHhhhhcccCCCCCchHH-------HHHHhcCCCceEEEeccccchhh
Confidence 344566666544 55788887766543 2568888888775542111 01333 23444444443333
Q ss_pred -hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 362 -HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 362 -~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
.+...++.. ...|+.+++..+..+..+ .|+..-.....|++|-|+.+. |+++|...+...-.....|..+-|+..
T Consensus 335 d~~ft~l~rn-~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 335 DRGFTMLGRN-CPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred hhhhhhhhcC-Chhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 223333221 178999999999987766 555544556789999999875 899999999876666667999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCeEEc
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILIL 493 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i~~~ 493 (507)
+...+..- +-+..+ .+|+.++|.+++- +..+ .+..|..+-|.|.|.
T Consensus 412 p~i~d~~L---e~l~~c-~~Leri~l~~~q~-vtk~---~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 412 PLITDATL---EHLSIC-RNLERIELIDCQD-VTKE---AISRFATHLPNIKVH 457 (483)
T ss_pred CCchHHHH---HHHhhC-cccceeeeechhh-hhhh---hhHHHHhhCccceeh
Confidence 98765532 445544 4899999988874 5543 455566677777553
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=47.74 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHh
Q 010572 428 APELVEVNAGYNLMPLESLTIICSALK 454 (507)
Q Consensus 428 n~~L~~L~Ls~N~l~~~g~~~L~~aL~ 454 (507)
+++|++|||++|.|+++|+..||++|+
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence 356778888888888888888887775
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=4.8e-05 Score=78.60 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=43.4
Q ss_pred hcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 397 VTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 397 L~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
......|++||||+|.|+...-.++..+ ..+++|.|..|.|..-.-. +++ .-..|+.|+|.+|++
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~~~----~f~-~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVSSG----MFQ-GLSGLKTLSLYDNQI 334 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHHHH----hhh-ccccceeeeecCCee
Confidence 4455678888888888877655555544 3678888888887642211 222 335788888888886
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=3.7e-06 Score=78.02 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCC
Q 010572 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~ 302 (507)
++.+++.|.||+|.++.- ++.+++ | ..++.|.+..+++. ++...+++++.|+.|+++-|.+.
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~-l-------~nlevln~~nnqie---------~lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAE-L-------KNLEVLNLSNNQIE---------ELPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHH-h-------hhhhhhhcccchhh---------hcChhhhhchhhhheecchhhhh
Confidence 346788889999987631 111111 1 12455555555532 24455788999999999998874
Q ss_pred chHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 303 ~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
.. -.++ +..+.|+.|||++|+++.
T Consensus 93 ~l-----prgf-gs~p~levldltynnl~e 116 (264)
T KOG0617|consen 93 IL-----PRGF-GSFPALEVLDLTYNNLNE 116 (264)
T ss_pred cC-----cccc-CCCchhhhhhcccccccc
Confidence 32 1222 457999999999999984
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=1.2e-05 Score=88.37 Aligned_cols=122 Identities=23% Similarity=0.163 Sum_probs=71.1
Q ss_pred HHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhH
Q 010572 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHI 363 (507)
Q Consensus 284 ~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~ 363 (507)
.|.-.+.|++||||+|++.+-. .|+ -.|.|+.|||++|.+.-. +. +
T Consensus 182 SLqll~ale~LnLshNk~~~v~------~Lr-~l~~LkhLDlsyN~L~~v-p~---------------l----------- 227 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD------NLR-RLPKLKHLDLSYNCLRHV-PQ---------------L----------- 227 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH------HHH-hcccccccccccchhccc-cc---------------c-----------
Confidence 3555567778888888876643 222 247788888888877620 00 0
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH-HHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE-TAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~-g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
..-+|.|+.|+|++|-++..- ++.+..+|+.||+|+|-|.+- -...|+.+ ..|+.|.|.+|++-
T Consensus 228 -----~~~gc~L~~L~lrnN~l~tL~------gie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 228 -----SMVGCKLQLLNLRNNALTTLR------GIENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLC 292 (1096)
T ss_pred -----chhhhhheeeeecccHHHhhh------hHHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCccc
Confidence 000256788888888775421 133445688888888876543 22333332 24777888888873
Q ss_pred --hhHHHHHHHHHh
Q 010572 443 --LESLTIICSALK 454 (507)
Q Consensus 443 --~~g~~~L~~aL~ 454 (507)
++--...++-+.
T Consensus 293 c~p~hRaataqYl~ 306 (1096)
T KOG1859|consen 293 CAPWHRAATAQYLH 306 (1096)
T ss_pred cCHHHHHHHHhHhc
Confidence 333334444444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00034 Score=78.55 Aligned_cols=107 Identities=23% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
++.|+|++|.+.+.....+ ....+|+.|+|++|.|++.++. .++..
T Consensus 420 v~~L~L~~n~L~g~ip~~i-----~~L~~L~~L~Ls~N~l~g~iP~--------~~~~l--------------------- 465 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-----SKLRHLQSINLSGNSIRGNIPP--------SLGSI--------------------- 465 (623)
T ss_pred EEEEECCCCCccccCCHHH-----hCCCCCCEEECCCCcccCcCCh--------HHhCC---------------------
Confidence 5666666666655444332 2346666666666666654331 11111
Q ss_pred hcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC
Q 010572 371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL 440 (507)
Q Consensus 371 l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~ 440 (507)
+.|+.|+|++|.+... +.+.+....+|++|+|++|.++...+..+.... .++..+++++|.
T Consensus 466 --~~L~~LdLs~N~lsg~----iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~---~~~~~l~~~~N~ 526 (623)
T PLN03150 466 --TSLEVLDLSYNSFNGS----IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL---LHRASFNFTDNA 526 (623)
T ss_pred --CCCCEEECCCCCCCCC----CchHHhcCCCCCEEECcCCcccccCChHHhhcc---ccCceEEecCCc
Confidence 4456666666665422 122233344566666666666555554444321 234455555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.26 E-value=6.4e-05 Score=75.26 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=71.3
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc-cccccCCchhhcccCCCcCccccccchhH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL-SKYDRSGPLFSLGAGKSLQSLRLLNLSHI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l-~~~~~~~l~~~L~~~~~L~~L~ll~l~~~ 363 (507)
+.-.|.++.|++|.|.+...+- ++ ..++|+.||||+|.++... +. .
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~n--La-----~L~~L~~LDLS~N~Ls~~~Gwh------------------~-------- 349 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQN--LA-----ELPQLQLLDLSGNLLAECVGWH------------------L-------- 349 (490)
T ss_pred hhhccceeEEeccccceeeehh--hh-----hcccceEeecccchhHhhhhhH------------------h--------
Confidence 4556889999999999877665 31 2488999999999887310 00 0
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
.+ .+++.|+|+.|.|.+.. +|...-+|..||+++|+|..-. .+ +.+...|.|+.+.|-+|++.
T Consensus 350 --KL-----GNIKtL~La~N~iE~LS------GL~KLYSLvnLDl~~N~Ie~ld--eV-~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 350 --KL-----GNIKTLKLAQNKIETLS------GLRKLYSLVNLDLSSNQIEELD--EV-NHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred --hh-----cCEeeeehhhhhHhhhh------hhHhhhhheeccccccchhhHH--Hh-cccccccHHHHHhhcCCCcc
Confidence 00 35677777777775421 2444556888888888875321 11 23445577888888888885
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=7.8e-06 Score=75.86 Aligned_cols=128 Identities=19% Similarity=0.159 Sum_probs=66.7
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
|.....++.|-||+|++.-..+. ++ ...+|+.|++++|.|+..-. .+++.+.|+.|.+.-|+ .
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppn-ia-----~l~nlevln~~nnqie~lp~---------~issl~klr~lnvgmnr--l 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPN-IA-----ELKNLEVLNLSNNQIEELPT---------SISSLPKLRILNVGMNR--L 91 (264)
T ss_pred ccchhhhhhhhcccCceeecCCc-HH-----HhhhhhhhhcccchhhhcCh---------hhhhchhhhheecchhh--h
Confidence 34456677888888888665443 22 23678888888888874221 23333333333332222 1
Q ss_pred HHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCC----CCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC
Q 010572 365 ASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKE----LKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 365 ~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n----~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
..++.+++ +.|++|||.+|.+.... |+.| .+|+-|.|++|.+..- +..+ .+..+|+.|.+..
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~-------lpgnff~m~tlralyl~dndfe~l-p~dv----g~lt~lqil~lrd 159 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENS-------LPGNFFYMTTLRALYLGDNDFEIL-PPDV----GKLTNLQILSLRD 159 (264)
T ss_pred hcCccccCCCchhhhhhcccccccccc-------CCcchhHHHHHHHHHhcCCCcccC-Chhh----hhhcceeEEeecc
Confidence 22334444 66788888887775421 2222 2456666666654210 1111 1224566666666
Q ss_pred CCC
Q 010572 439 NLM 441 (507)
Q Consensus 439 N~l 441 (507)
|.+
T Consensus 160 ndl 162 (264)
T KOG0617|consen 160 NDL 162 (264)
T ss_pred Cch
Confidence 655
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00053 Score=72.41 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=36.8
Q ss_pred CcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHH
Q 010572 375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSAL 453 (507)
Q Consensus 375 L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL 453 (507)
+.++.++.|.++. +.......+..++++..|++++|..++.|+..+.+++..|..++.+-.+.|..++.|...+.+++
T Consensus 415 l~el~ls~~~lka-~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~~ 492 (553)
T KOG4242|consen 415 LAELSLSPGPLKA-GLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEER 492 (553)
T ss_pred ccCcccCCCcccc-cHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhhc
Confidence 4444444444433 12233333444444555555555555555555555554444455555555555555544444443
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00043 Score=45.00 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=24.8
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhc
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLL 314 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~ 314 (507)
+++|++|||++|.|+++|++.+|++|.
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999874
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00066 Score=70.83 Aligned_cols=247 Identities=19% Similarity=0.183 Sum_probs=128.7
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
.|++|.+++-.. .+...+. .+..+++++++|++.+|. +++.....+.+. ...+.++.+.. |..
T Consensus 139 ~lk~LSlrG~r~-v~~sslr-t~~~~CpnIehL~l~gc~~iTd~s~~sla~~-------C~~l~~l~L~~-------c~~ 202 (483)
T KOG4341|consen 139 FLKELSLRGCRA-VGDSSLR-TFASNCPNIEHLALYGCKKITDSSLLSLARY-------CRKLRHLNLHS-------CSS 202 (483)
T ss_pred cccccccccccc-CCcchhh-HHhhhCCchhhhhhhcceeccHHHHHHHHHh-------cchhhhhhhcc-------cch
Confidence 456666654321 1222232 234566788888888776 344444444221 12344443332 122
Q ss_pred chHHHHHH-HhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCC-CCCc-c---c-------c---ccc
Q 010572 277 VVVELVSF-LSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGW-L---S-------K---YDR 339 (507)
Q Consensus 277 l~~~L~~~-L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~-L~~~-l---~-------~---~~~ 339 (507)
++...... -..+++|++|++|.+. +++.|++.+..+. ..++++.+.+|. ++.. + . + .+|
T Consensus 203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~----~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC----KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc----hhhhhhhhcccccccHHHHHHHhccChHhhccchhhh
Confidence 34333333 3456788888888765 5666666554432 224444444331 1100 0 0 0 001
Q ss_pred CCchh-----hcccCCCcCccccccchhHHHHHHhhhc---CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 340 SGPLF-----SLGAGKSLQSLRLLNLSHIAASLGKFFG---TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 340 ~~l~~-----~L~~~~~L~~L~ll~l~~~~~~L~~~l~---~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
..++. +-..+..|..|...+-..+....-.+++ .+|+.|-|+.|+ +++.|+..++. ....|+.+++..
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~ 355 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEE 355 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccc
Confidence 10000 0001111222332222222222223333 678888888887 78888777653 245688899888
Q ss_pred CCCChHHHHHHHhhCCCCCCccEEEccCCC-CChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 411 NRGGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 411 N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...+..+ .|.++-..++.|+.|.|+.+. ++|+|...+...-.. ...|+.|.|+.+..
T Consensus 356 ~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~-~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 356 CGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS-LEGLEVLELDNCPL 413 (483)
T ss_pred cceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc-ccccceeeecCCCC
Confidence 8766655 456666667789999999765 478887766543322 24677788877765
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00083 Score=75.47 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=62.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|+.|+|++|.+.. .+...+.....|++|||++|.++......++. .++|+.|+|++|.+...-...+...
T Consensus 442 ~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~----L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 442 RHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ----LTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhc----CCCCCEEECcCCcccccCChHHhhc
Confidence 678999999998853 23333555678999999999998877776654 3689999999999975544433321
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
..++..+++.+|..
T Consensus 514 ----~~~~~~l~~~~N~~ 527 (623)
T PLN03150 514 ----LLHRASFNFTDNAG 527 (623)
T ss_pred ----cccCceEEecCCcc
Confidence 13467888888864
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00012 Score=56.15 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=32.3
Q ss_pred CCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCC
Q 010572 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 374 ~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
+|++|+|++|+|....- +++....+|++|++++|.++.-... ++...++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPP----DSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECT----TTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCH----HHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCcC
Confidence 46667777766654321 1223345566666666666543222 233445666666666654
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0021 Score=72.80 Aligned_cols=116 Identities=22% Similarity=0.205 Sum_probs=68.2
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIA 364 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~ 364 (507)
..+|+|+.|.+++=.+..+....+| .++++|..||+|+.+++.. ..++..++|+.|..-|+. .-.
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc----~sFpNL~sLDIS~TnI~nl----------~GIS~LknLq~L~mrnLe~e~~ 210 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLC----ASFPNLRSLDISGTNISNL----------SGISRLKNLQVLSMRNLEFESY 210 (699)
T ss_pred hhCcccceEEecCceecchhHHHHh----hccCccceeecCCCCccCc----------HHHhccccHHHHhccCCCCCch
Confidence 4679999999999998777766666 4569999999999999852 134444555554444443 112
Q ss_pred HHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhh---cCCCCCCEEeccCCCCChH
Q 010572 365 ASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGV---TKELKLVNINISKNRGGVE 416 (507)
Q Consensus 365 ~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL---~~n~~L~~LdLs~N~i~~~ 416 (507)
..+-.-+. +.|++||+|.....+.- +.+-.-+ ...+.|+.||.|+..+..+
T Consensus 211 ~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 211 QDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHH
Confidence 22323333 66677777665544332 1111111 1133566666665555444
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0041 Score=62.62 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=34.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh-HHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV-ETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~-~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
+++..+-+..|-|.++.... .-.+...+-.|+|+.|+|.+ +... ++...+.|+.|.++.|++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~~~idswasvD----~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGANNIDSWASVD----ALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcc---cCCCCCcchhhhhcccccccHHHHH----HHcCCchhheeeccCCcccc
Confidence 55555666666554433221 12223345577777777754 2222 23344667777777777764
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0026 Score=66.95 Aligned_cols=42 Identities=33% Similarity=0.263 Sum_probs=23.2
Q ss_pred HHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 284 ~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
.+..+++|+.|++++|++.+...... ....|+.|++++|.++
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~------~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLS------NLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhh------hhhhhhheeccCCccc
Confidence 34556666666666666655443210 2255666666666665
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.00083 Score=70.70 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=90.7
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
.+|+.|++++|++...- ..+ ...+.|+.|++++|.++...+ ..+....|+.|.+.++. ...++
T Consensus 140 ~nL~~L~l~~N~i~~l~-----~~~-~~l~~L~~L~l~~N~l~~l~~---------~~~~~~~L~~L~ls~N~--i~~l~ 202 (394)
T COG4886 140 SNLKELDLSDNKIESLP-----SPL-RNLPNLKNLDLSFNDLSDLPK---------LLSNLSNLNNLDLSGNK--ISDLP 202 (394)
T ss_pred hhcccccccccchhhhh-----hhh-hccccccccccCCchhhhhhh---------hhhhhhhhhheeccCCc--cccCc
Confidence 38999999999997752 111 235999999999999985221 11134445666665554 11122
Q ss_pred hh--hcCCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 369 KF--FGTSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 369 ~~--l~~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
.. ....|++|++++|. +... ..+.....+..|.+++|++... -..+...++++.|+++.|.+.+-.
T Consensus 203 ~~~~~~~~L~~l~~~~N~~~~~~------~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 203 PEIELLSALEELDLSNNSIIELL------SSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred hhhhhhhhhhhhhhcCCcceecc------hhhhhcccccccccCCceeeec-----cchhccccccceeccccccccccc
Confidence 21 12457888888885 2221 1233445677777888877652 112233356889999999888643
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
. +. +..+++.|++++|.+
T Consensus 272 ~------~~-~~~~l~~L~~s~n~~ 289 (394)
T COG4886 272 S------LG-SLTNLRELDLSGNSL 289 (394)
T ss_pred c------cc-ccCccCEEeccCccc
Confidence 2 21 235788899988876
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.002 Score=68.25 Aligned_cols=108 Identities=17% Similarity=0.009 Sum_probs=73.7
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCC---------------------------------CCEEeccCCCCChHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELK---------------------------------LVNINISKNRGGVETAK 419 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~---------------------------------L~~LdLs~N~i~~~g~~ 419 (507)
..+|+|.++.|.+..+|...+ .+..+.+ +..+.++.|.++. ++.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~ 430 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLE 430 (553)
T ss_pred eeeeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHH
Confidence 568999999999887775544 3444444 4445555555432 334
Q ss_pred HHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHH-HHHHHHHc
Q 010572 420 FLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVS-MLSEFRHN 486 (507)
Q Consensus 420 ~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~-~l~~~~~~ 486 (507)
.+...+..++++..|++++|..++.|...|..+++.| |+++..-.+.|.. +..+.. .+.++..|
T Consensus 431 s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n-~rlr~ipds~n~p--~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 431 SAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSN-CRLRPIPDSLNLP--EDPGLGPRNEERPLN 495 (553)
T ss_pred HHHHhhccCcccccccccCCCcccCCCCcCccccCCC-CccCCCCCCCCCc--cccccchhhhhcccc
Confidence 4445555667899999999999999999999998876 7888888877774 555544 44454444
|
|
| >KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0055 Score=62.44 Aligned_cols=117 Identities=13% Similarity=0.183 Sum_probs=85.4
Q ss_pred CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
+.+++.+|+++. |.-.-.+.+++|+..+...+.--|.+-+.++..+.+++..++.|++|++|+++.|-|+..|...+-.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 678888888776 5555667888888888888888888888888888888888888888999999999998888888888
Q ss_pred HHhcCCCCccEEEecCCCCC-CCccHHHHHHHHHHcCCCeE
Q 010572 452 ALKVAKGHLQRLDLTGNNWE-LQPSHVSMLSEFRHNGLPIL 491 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~~-~~~~~~~~l~~~~~~~~~i~ 491 (507)
+|+.+ .+|..|-. .|+-. .+.....-++-..+.+..|+
T Consensus 278 al~~n-~tl~el~~-dnqrq~lg~~vemeia~~leen~sll 316 (353)
T KOG3735|consen 278 ALQSN-KSLTELKN-DNQRQVLGNAVEMEIALELEENASLL 316 (353)
T ss_pred HHhcc-chhhHhhh-hhHHhhcccHHHHHHHHHHHhccccc
Confidence 88877 45766644 23321 23444444555555555553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0012 Score=50.57 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++|++|+|++|+|..-.... +...++|++|+|++|.|+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~-----f~~l~~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDS-----FSNLPNLETLDLSNNNLTS 39 (61)
T ss_dssp TTESEEEETSSTESEECTTT-----TTTGTTESEEEETSSSESE
T ss_pred CcCcEEECCCCCCCccCHHH-----HcCCCCCCEeEccCCccCc
Confidence 45667777777666544321 2334667777777776653
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.00029 Score=77.73 Aligned_cols=136 Identities=21% Similarity=0.157 Sum_probs=84.3
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
|..-+.+.|.|.--. ++| .-.+.|+.|+||+|.++.. ++
T Consensus 166 L~~a~fsyN~L~~mD-----~SL-qll~ale~LnLshNk~~~v-----------------------------------~~ 204 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMD-----ESL-QLLPALESLNLSHNKFTKV-----------------------------------DN 204 (1096)
T ss_pred HhhhhcchhhHHhHH-----HHH-HHHHHhhhhccchhhhhhh-----------------------------------HH
Confidence 555667777764322 122 1237789999999999741 11
Q ss_pred hc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh-HHHHHHHhhCCCCCCccEEEccCCCCChh-HH
Q 010572 371 FG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV-ETAKFLSKLMPLAPELVEVNAGYNLMPLE-SL 446 (507)
Q Consensus 371 l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~-~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~-g~ 446 (507)
+. +.|++|||++|++.... ..=+..++|+.|+|++|.++. .|.. +..+|+.||+|+|-|.+- -.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp-----~l~~~gc~L~~L~lrnN~l~tL~gie-------~LksL~~LDlsyNll~~hseL 272 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVP-----QLSMVGCKLQLLNLRNNALTTLRGIE-------NLKSLYGLDLSYNLLSEHSEL 272 (1096)
T ss_pred HHhcccccccccccchhcccc-----ccchhhhhheeeeecccHHHhhhhHH-------hhhhhhccchhHhhhhcchhh
Confidence 12 66888899998876422 111223458999999998753 2222 235799999999999753 33
Q ss_pred HHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHH
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFR 484 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~ 484 (507)
..|. +|. .|+.|+|.||++-.-+..+...+.-.
T Consensus 273 ~pLw-sLs----~L~~L~LeGNPl~c~p~hRaataqYl 305 (1096)
T KOG1859|consen 273 EPLW-SLS----SLIVLWLEGNPLCCAPWHRAATAQYL 305 (1096)
T ss_pred hHHH-HHH----HHHHHhhcCCccccCHHHHHHHHhHh
Confidence 3333 343 48899999998744444444444333
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=61.28 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHH
Q 010572 373 TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFL 421 (507)
Q Consensus 373 ~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L 421 (507)
+.|++|.+.+|. +++.|...++...+ .|++|+|+.+. +++.+...+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~---~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCP---SLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcC---cccEEeeecCccchHHHHHHH
Confidence 345666655555 56666555554332 26666666554 334444433
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0061 Score=43.94 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=7.8
Q ss_pred CCCCccEEEccCCCCC
Q 010572 427 LAPELVEVNAGYNLMP 442 (507)
Q Consensus 427 ~n~~L~~L~Ls~N~l~ 442 (507)
..++|+.|++++|.|.
T Consensus 22 ~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 22 NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TCTTSSEEEETSSCCS
T ss_pred CCCCCCEEEecCCCCC
Confidence 3344555555555544
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.003 Score=39.26 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=13.2
Q ss_pred CCccEEEccCCCCChhHHHHHH
Q 010572 429 PELVEVNAGYNLMPLESLTIIC 450 (507)
Q Consensus 429 ~~L~~L~Ls~N~l~~~g~~~L~ 450 (507)
++|++|+|++|.|+++|++.||
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4566666666666666666665
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.019 Score=65.16 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCCCEEEccCCCCCchHH-HHHHHHhccCCCCccEEECcCCCCCC-cccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIGG-WLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~-~~L~~~L~~~~~~L~~LdLS~N~L~~-~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
-.+|++||+++...-..|- +.++ ...|+|++|.+++=.+.. ++. ....+.++|.+|++++-. ..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig----~~LPsL~sL~i~~~~~~~~dF~--------~lc~sFpNL~sLDIS~Tn--I~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIG----TMLPSLRSLVISGRQFDNDDFS--------QLCASFPNLRSLDISGTN--IS 186 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHh----hhCcccceEEecCceecchhHH--------HHhhccCccceeecCCCC--cc
Confidence 3579999999877665553 2232 235899999988766652 211 122333444444443321 00
Q ss_pred HHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH--HHHHHHhhCCCCCCccEEEccCCCC
Q 010572 366 SLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE--TAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 366 ~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~--g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
.+ .+++ .+|++|.+.+-.+.+. ..+- .|-..++|++||+|...-... .+...-+.-...|+|+.||.|++.+
T Consensus 187 nl-~GIS~LknLq~L~mrnLe~e~~--~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLEFESY--QDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred Cc-HHHhccccHHHHhccCCCCCch--hhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 11 1222 5666666666555441 2222 233466788888887653332 2333333334457888888888888
Q ss_pred ChhHHHHHHH
Q 010572 442 PLESLTIICS 451 (507)
Q Consensus 442 ~~~g~~~L~~ 451 (507)
..+-++.+.+
T Consensus 263 ~~~~le~ll~ 272 (699)
T KOG3665|consen 263 NEEILEELLN 272 (699)
T ss_pred hHHHHHHHHH
Confidence 8777776654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0016 Score=69.36 Aligned_cols=220 Identities=22% Similarity=0.146 Sum_probs=113.7
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...+..|++.++.. +.+... +..+.+|++|+|++|.++.-..-. . ...++.|.+.+|.+....
T Consensus 94 ~~~l~~l~l~~n~i----~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~---~-------l~~L~~L~l~~N~i~~~~-- 156 (414)
T KOG0531|consen 94 LKSLEALDLYDNKI----EKIENL-LSSLVNLQVLDLSFNKITKLEGLS---T-------LTLLKELNLSGNLISDIS-- 156 (414)
T ss_pred ccceeeeeccccch----hhcccc-hhhhhcchheeccccccccccchh---h-------ccchhhheeccCcchhcc--
Confidence 45567777776632 222111 235678888888888776421100 0 112555555555432221
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
-+..++.|+.+++++|.+.+.... .+ ...++++.+++..|.+...-. +.....+..+
T Consensus 157 --------~~~~l~~L~~l~l~~n~i~~ie~~----~~-~~~~~l~~l~l~~n~i~~i~~----------~~~~~~l~~~ 213 (414)
T KOG0531|consen 157 --------GLESLKSLKLLDLSYNRIVDIEND----EL-SELISLEELDLGGNSIREIEG----------LDLLKKLVLL 213 (414)
T ss_pred --------CCccchhhhcccCCcchhhhhhhh----hh-hhccchHHHhccCCchhcccc----------hHHHHHHHHh
Confidence 233477888888888888665441 01 234788888888888873211 0000111111
Q ss_pred ccccchhHHHHHHhhhc--C--CCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCc
Q 010572 356 RLLNLSHIAASLGKFFG--T--SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~--~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.+.++. ...+ ..+. . .|+++++++|++...+ +.+.....+..|++++|.++... .+...+.+
T Consensus 214 ~l~~n~--i~~~-~~l~~~~~~~L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~~~~------~~~~~~~~ 279 (414)
T KOG0531|consen 214 SLLDNK--ISKL-EGLNELVMLHLRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRISNLE------GLERLPKL 279 (414)
T ss_pred hccccc--ceec-cCcccchhHHHHHHhcccCcccccc-----ccccccccccccchhhccccccc------cccccchH
Confidence 222221 0000 0011 1 3778888888887643 44666777888888888875431 12223345
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 432 VEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+.+..|.+.......=..... ...+++...+.+|..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 280 SELWLNDNKLALSEAISQEYITS-AAPTLVTLTLELNPI 317 (414)
T ss_pred HHhccCcchhcchhhhhcccccc-ccccccccccccCcc
Confidence 66666666665332111111011 124566677777765
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0049 Score=38.28 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.4
Q ss_pred CCCCCEEEccCCCCCchHHHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVF 310 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~ 310 (507)
+++|++|+|++|+|+++|++.++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 57899999999999999999876
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.017 Score=41.59 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=29.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV 415 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~ 415 (507)
++|++|+|++|+|++.. ..+....+|++|++++|.|++
T Consensus 1 ~~L~~L~l~~N~i~~l~-----~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-----PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-----GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC-----chHhCCCCCCEEEecCCCCCC
Confidence 46899999999999754 236678899999999999975
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0025 Score=67.98 Aligned_cols=86 Identities=27% Similarity=0.167 Sum_probs=49.0
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~ 363 (507)
+..+++|++|+||+|.|++.-. + ...+.|+.|++++|.|+..- .+.....|+.+.+.+++ ..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~--l-----~~l~~L~~L~l~~N~i~~~~----------~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG--L-----STLTLLKELNLSGNLISDIS----------GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhhcchheeccccccccccc--h-----hhccchhhheeccCcchhcc----------CCccchhhhcccCCcchhhh
Confidence 6677888888888888877532 2 12355888888888887421 12223334444454444 11
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCc
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGS 387 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~ 387 (507)
.......-.+.++.+++.+|.+..
T Consensus 177 ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 177 IENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhhhhhhhccchHHHhccCCchhc
Confidence 111000111677778888887754
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.031 Score=59.57 Aligned_cols=140 Identities=18% Similarity=0.078 Sum_probs=77.7
Q ss_pred CEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC-CCCcccccccCCchhhcccCCCcCccccccc----h---hH
Q 010572 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL----S---HI 363 (507)
Q Consensus 292 ~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~-L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l----~---~~ 363 (507)
..+....+.+...+...+. ...+.|+.|.++.+. ++... +......++.|+.|.+... . ..
T Consensus 166 ~~~~~~~~~~~~~~~~~l~----~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 234 (482)
T KOG1947|consen 166 LSLSCCGSLLLDKILLRLL----SSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLL 234 (482)
T ss_pred eeeecccccccHHHHHHHH----hhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhH
Confidence 3344444455555444332 224778888887773 33210 1113334455555554321 0 11
Q ss_pred HHHHHhhhcCCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCCC
Q 010572 364 AASLGKFFGTSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
...+.... ..|+.|+++.+. +++.|...++.. ...|++|.++++. ++++|...++... +.|++|+++++..
T Consensus 235 ~~~~~~~~-~~L~~l~l~~~~~isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~~~~---~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 235 LLLLLSIC-RKLKSLDLSGCGLVTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIAERC---PSLRELDLSGCHG 307 (482)
T ss_pred hhhhhhhc-CCcCccchhhhhccCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHHHhc---CcccEEeeecCcc
Confidence 11122221 667777777777 777777777665 4467777777666 6777777766543 5577777776555
Q ss_pred -ChhHHHHH
Q 010572 442 -PLESLTII 449 (507)
Q Consensus 442 -~~~g~~~L 449 (507)
++.|...+
T Consensus 308 ~~d~~l~~~ 316 (482)
T KOG1947|consen 308 LTDSGLEAL 316 (482)
T ss_pred chHHHHHHH
Confidence 45565544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.013 Score=59.05 Aligned_cols=165 Identities=19% Similarity=0.119 Sum_probs=86.8
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch--hH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI 363 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--~~ 363 (507)
...+.+++|||..|.|++=.- ++. +..+.+.|+.|+||.|.++..+... -...++|++|.+ |.. ..
T Consensus 68 ~~~~~v~elDL~~N~iSdWse--I~~-ile~lP~l~~LNls~N~L~s~I~~l--------p~p~~nl~~lVL-NgT~L~w 135 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE--IGA-ILEQLPALTTLNLSCNSLSSDIKSL--------PLPLKNLRVLVL-NGTGLSW 135 (418)
T ss_pred HHhhhhhhhhcccchhccHHH--HHH-HHhcCccceEeeccCCcCCCccccC--------cccccceEEEEE-cCCCCCh
Confidence 456789999999999987432 332 3355699999999999998643320 011222333322 111 01
Q ss_pred HHHHHhhhc--CCCcEEEeccCCC-----CchhHHHHHHh---hcCC-----------------CCCCEEeccCCCCChH
Q 010572 364 AASLGKFFG--TSVQVLNIGAIGL-----GSSGFRVLQDG---VTKE-----------------LKLVNINISKNRGGVE 416 (507)
Q Consensus 364 ~~~L~~~l~--~~L~~L~Ls~n~l-----~~~G~~~L~~a---L~~n-----------------~~L~~LdLs~N~i~~~ 416 (507)
+. +..++. +.+++|.+|.|.+ .+.......-+ +..+ +++..+-+..|.+.+.
T Consensus 136 ~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~ 214 (418)
T KOG2982|consen 136 TQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTE 214 (418)
T ss_pred hh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccch
Confidence 00 001111 4456666666622 12211111111 1111 2233334444444433
Q ss_pred HHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 417 TAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 417 g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+. +.....|.+-.|+|+.|+|++...- ++|..- +.|..|.+..|++
T Consensus 215 s~e---k~se~~p~~~~LnL~~~~idswasv---D~Ln~f-~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 215 SSE---KGSEPFPSLSCLNLGANNIDSWASV---DALNGF-PQLVDLRVSENPL 261 (418)
T ss_pred hhc---ccCCCCCcchhhhhcccccccHHHH---HHHcCC-chhheeeccCCcc
Confidence 222 2223346678899999999875432 445433 5788888888886
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.015 Score=52.61 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcC-CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
..|...+|++|.+.+.. +-+.. -..++.|||++|.|.+--.+ ++.. +.|+.||++.|.|..
T Consensus 53 ~el~~i~ls~N~fk~fp-----~kft~kf~t~t~lNl~~neisdvPeE-~Aam----~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFP-----KKFTIKFPTATTLNLANNEISDVPEE-LAAM----PALRSLNLRFNPLNA 114 (177)
T ss_pred ceEEEEecccchhhhCC-----HHHhhccchhhhhhcchhhhhhchHH-Hhhh----HHhhhcccccCcccc
Confidence 44555556655554322 11211 22455666666665543222 3322 456666666666653
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.01 Score=64.40 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=73.5
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~ 361 (507)
..++.++..|++|||+.|++.--... +| .+-|+.|-+++|+++..-. -++...+|..|....|.
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~lp~~-lC------~lpLkvli~sNNkl~~lp~---------~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSHLPDG-LC------DLPLKVLIVSNNKLTSLPE---------EIGLLPTLAHLDVSKNE 177 (722)
T ss_pred chhhhhhhHHHHhhhccchhhcCChh-hh------cCcceeEEEecCccccCCc---------ccccchhHHHhhhhhhh
Confidence 34566778899999999998765442 33 2679999999999984211 12222223333333332
Q ss_pred hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 362 HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 362 ~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
.. .+..-++ .+|+.|+++.|++.+.- +-+. ...|..||+|.|+|..-=+ -+.....|++|-|.+|
T Consensus 178 -i~-slpsql~~l~slr~l~vrRn~l~~lp-----~El~-~LpLi~lDfScNkis~iPv-----~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 178 -IQ-SLPSQLGYLTSLRDLNVRRNHLEDLP-----EELC-SLPLIRLDFSCNKISYLPV-----DFRKMRHLQVLQLENN 244 (722)
T ss_pred -hh-hchHHhhhHHHHHHHHHhhhhhhhCC-----HHHh-CCceeeeecccCceeecch-----hhhhhhhheeeeeccC
Confidence 11 1111111 45666666666654322 1111 3347777777777643211 1223355777777777
Q ss_pred CCChhH
Q 010572 440 LMPLES 445 (507)
Q Consensus 440 ~l~~~g 445 (507)
+|..--
T Consensus 245 PLqSPP 250 (722)
T KOG0532|consen 245 PLQSPP 250 (722)
T ss_pred CCCCCh
Confidence 776443
|
|
| >KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.07 Score=54.59 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=73.6
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC--CCCChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY--NLMPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~--N~l~~~g~~~L~ 450 (507)
+.++...|.+.+..+.-..+++..|..|.+|++|++++|.|++.|.-.+-+++..|.+|+++..-+ =.+|....+.++
T Consensus 227 t~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia 306 (353)
T KOG3735|consen 227 THVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIA 306 (353)
T ss_pred chhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHH
Confidence 667777888888888888889999999999999999999999999999999999999998876642 145777778888
Q ss_pred HHHhcCCCCccEE
Q 010572 451 SALKVAKGHLQRL 463 (507)
Q Consensus 451 ~aL~~~~~~L~~L 463 (507)
..|.++. +|-..
T Consensus 307 ~~leen~-sllk~ 318 (353)
T KOG3735|consen 307 LELEENA-SLLKF 318 (353)
T ss_pred HHHHhcc-ccccc
Confidence 8888874 34444
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.0078 Score=65.26 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 430 ELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 430 ~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.|..||+|+|.+.---+. ++.. .+|+.|-|..|.+
T Consensus 212 pLi~lDfScNkis~iPv~-----fr~m-~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVD-----FRKM-RHLQVLQLENNPL 246 (722)
T ss_pred ceeeeecccCceeecchh-----hhhh-hhheeeeeccCCC
Confidence 489999999999743221 3333 5799999999997
|
|
| >PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.32 Score=42.12 Aligned_cols=64 Identities=25% Similarity=0.454 Sum_probs=50.2
Q ss_pred cccCCChhhHHHHHhcCCchhhhhhhccCCccccCCCCCCCcccccCcccccCCCccHHHHHHHhcccCc-ccCCCC--C
Q 010572 28 YVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG-FTDQIE--P 104 (507)
Q Consensus 28 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~w~~-~~~~~~--~ 104 (507)
.|.++|-+++.-|+.+.+|.-|..++..=| .+...++ .-|+++|+..-|. ...+.. +
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np-----~l~~~td---------------eLW~~~i~rdFp~~~~~~~~~~~ 62 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNP-----HLIEDTD---------------ELWKKLIKRDFPEESKRQKPKEP 62 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCC-----CcchhhH---------------HHHHHHHHhHCcChhhccccccc
Confidence 367899999999999999999999998877 6622221 3699999999987 222222 6
Q ss_pred CcHHHHH
Q 010572 105 VDWQQRY 111 (507)
Q Consensus 105 ~~w~~~~ 111 (507)
.+|.++|
T Consensus 63 ~~Wr~~Y 69 (109)
T PF06881_consen 63 ESWRELY 69 (109)
T ss_pred chHHHHH
Confidence 7999999
|
In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.091 Score=47.69 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=17.1
Q ss_pred CCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCC
Q 010572 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 414 (507)
Q Consensus 374 ~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~ 414 (507)
+++.|||++|.|.+.-.+ + .....|+.||++.|.+.
T Consensus 78 t~t~lNl~~neisdvPeE-~----Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEE-L----AAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhhcchhhhhhchHH-H----hhhHHhhhcccccCccc
Confidence 455555555555443322 2 22334555555555554
|
|
| >KOG3926 consensus F-box proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.1 Score=51.72 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhccCCCC--CCcccCCChhhHHHHHhcCCchhhhhhhccCCcccc-CCCCCCCcccccCcccccCCCc
Q 010572 7 LISLAALAVKRELLLGDDV--IPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDG-DDCGSPDYCFENGRKRGRYGNF 83 (507)
Q Consensus 7 l~~~c~~~~~~~~~~~~~~--~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
.+-+-.|.+..+..-.+.. -|.+.+||.|.+--|+-|||.. ..|...+-...| +.+..++
T Consensus 178 ~til~~qqv~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh--~dL~s~aqa~etl~~l~~e~--------------- 240 (332)
T KOG3926|consen 178 ETILRWQQVLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDH--RDLESLAQAWETLAKLSEER--------------- 240 (332)
T ss_pred HHHHHHHHHHHhhcccCCCcCCCCcccchHHHHHHHHHHccCc--chHHHHHHhhHHHHHHHHHH---------------
Confidence 4445667777777665553 4789999999999999999964 111111111111 1222222
Q ss_pred cHHHHHHHhcccCc--------ccCCCCCCcHHHHHHH
Q 010572 84 NTVWKKLFKTRWSG--------FTDQIEPVDWQQRYWE 113 (507)
Q Consensus 84 ~~~w~~~~~~~w~~--------~~~~~~~~~w~~~~~e 113 (507)
.-||.+|+-|... +.+.| ..|||||||.
T Consensus 241 -~iWkkLcqfHF~erQi~~~l~l~k~~-q~dWkqmyf~ 276 (332)
T KOG3926|consen 241 -RIWKKLCQFHFNERQIHTILILSKKG-QKDWKQMYFQ 276 (332)
T ss_pred -HHHHHHHHHHhhHHHHHHhhhhcccc-chhHHHHHHH
Confidence 2599999999876 22222 5799999953
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.03 Score=56.16 Aligned_cols=105 Identities=20% Similarity=0.224 Sum_probs=65.6
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASL 367 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L 367 (507)
..+.+.||.-++.|.|.. +|+- .+.|+.|.||-|.|+..-+ +..|
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~k----Mp~lEVLsLSvNkIssL~p----------l~rC------------------ 62 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEK----MPLLEVLSLSVNKISSLAP----------LQRC------------------ 62 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHh----cccceeEEeeccccccchh----------HHHH------------------
Confidence 446778888889888864 3432 3889999999998875211 1111
Q ss_pred HhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEE
Q 010572 368 GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 368 ~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
+.|++|.|+.|.|.+.. .|. -|...++|+.|+|..|. -+..|...=..+|...|+|+.||
T Consensus 63 -----trLkElYLRkN~I~sld--EL~-YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 63 -----TRLKELYLRKNCIESLD--ELE-YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -----HHHHHHHHHhcccccHH--HHH-HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 34566666666665532 221 13445677888887776 44455556566666667777665
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.16 Score=59.40 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=61.8
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
+|++|-+.++.. ....+...++..++.|+.|||++|.=..+.+..+ ..|. .++.|+++...+.
T Consensus 546 ~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li-------~LryL~L~~t~I~------- 608 (889)
T KOG4658|consen 546 KLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELV-------HLRYLDLSDTGIS------- 608 (889)
T ss_pred ccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhh-------hhhcccccCCCcc-------
Confidence 577777766531 1333344455677999999999864333333332 1111 2444544433321
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~ 329 (507)
.+...|..++.|.+||+..+.-....+... ...++|++|.|-.-.
T Consensus 609 --~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-----~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 609 --HLPSGLGNLKKLIYLNLEVTGRLESIPGIL-----LELQSLRVLRLPRSA 653 (889)
T ss_pred --ccchHHHHHHhhheeccccccccccccchh-----hhcccccEEEeeccc
Confidence 345557778889999998877543332211 224888988886554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.12 Score=51.23 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=41.9
Q ss_pred CCCcEEEeccCCCCc-hhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGS-SGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~-~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
+.|++|.++.|.+.. .|...+++.. ..|++|+||+|.|.+ ...+ +-++..++|.+|++..|..+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~---P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKA---PNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhC---CceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCCcc
Confidence 678888998886543 3445555543 678889999998875 1111 11222356888888887775
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.9 Score=46.10 Aligned_cols=134 Identities=15% Similarity=0.262 Sum_probs=70.2
Q ss_pred CCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC-CC
Q 010572 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HL 301 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N-~L 301 (507)
.+.++++|++++|.+..- +. . ...++.|.++.+.-+. .++. .+ .++|++|++++| ++
T Consensus 50 ~~~~l~~L~Is~c~L~sL--P~---------L-P~sLtsL~Lsnc~nLt----sLP~----~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 50 EARASGRLYIKDCDIESL--PV---------L-PNELTEITIENCNNLT----TLPG----SI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred HhcCCCEEEeCCCCCccc--CC---------C-CCCCcEEEccCCCCcc----cCCc----hh--hhhhhheEccCcccc
Confidence 446788888888865421 11 1 1246666665433211 1111 12 247889999987 44
Q ss_pred CchHHHHHHHHhccCCCCccEEECcCCCCCC--cccccccCCchhhcccCCCcCccccccch-hHHHHHHhhhcCCCcEE
Q 010572 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGG--WLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFGTSVQVL 378 (507)
Q Consensus 302 ~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~--~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~~~L~~L 378 (507)
. .+ + .+|++|+|+.|.+.. .++ .+|++|.+-+.. .....++..+..+|++|
T Consensus 108 ~---------sL--P-~sLe~L~L~~n~~~~L~~LP--------------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L 161 (426)
T PRK15386 108 S---------GL--P-ESVRSLEIKGSATDSIKNVP--------------NGLTSLSINSYNPENQARIDNLISPSLKTL 161 (426)
T ss_pred c---------cc--c-cccceEEeCCCCCcccccCc--------------chHhheeccccccccccccccccCCcccEE
Confidence 2 11 2 668888887766542 111 123444432211 00111222344688888
Q ss_pred EeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 379 ~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
++++|.... +...|| .+|+.|+++.|
T Consensus 162 ~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 162 SLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 888877541 222344 47888888776
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=86.57 E-value=0.43 Score=33.92 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=27.3
Q ss_pred hhhhhhhhhccCCcccccchhhhhccchhh-cccccccccccccceec
Q 010572 124 AELVVLPSFRGLISDINISDTILNYIGYEQ-QMNHLACDYSKLSYHCQ 170 (507)
Q Consensus 124 ~e~~~~~~~~~~l~di~~~~~~l~~~~~~~-~~~c~~~~l~~l~~~c~ 170 (507)
+|++++..|+..|.. .|..++..|.... .++|.| -||.|.
T Consensus 3 ~d~~aLl~~k~~l~~--~~~~~l~~W~~~~~~~~C~W-----~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNN--DPSGVLSSWNPSSDSDPCSW-----SGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT---SC-CCCTT--TT--S-CCCS-----TTEEE-
T ss_pred HHHHHHHHHHHhccc--ccCcccccCCCcCCCCCeee-----ccEEeC
Confidence 789999999999984 1567899997653 799999 377773
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=86.03 E-value=0.83 Score=28.74 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=13.1
Q ss_pred CCccEEEccCCC-CChhHHHHHH
Q 010572 429 PELVEVNAGYNL-MPLESLTIIC 450 (507)
Q Consensus 429 ~~L~~L~Ls~N~-l~~~g~~~L~ 450 (507)
++|++|+|+++. ++|.|+..|+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666653 6666665554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.81 E-value=0.99 Score=43.54 Aligned_cols=88 Identities=14% Similarity=0.002 Sum_probs=46.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|..|.|++|+|+..+ ..|..+ ...|+.|-|.+|.|..-|- | .-+..+|+|+.|.+=.|++....--. +.+
T Consensus 64 ~rL~tLll~nNrIt~I~-p~L~~~---~p~l~~L~LtnNsi~~l~d--l-~pLa~~p~L~~Ltll~Npv~~k~~YR-~yv 135 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRID-PDLDTF---LPNLKTLILTNNSIQELGD--L-DPLASCPKLEYLTLLGNPVEHKKNYR-LYV 135 (233)
T ss_pred cccceEEecCCcceeec-cchhhh---ccccceEEecCcchhhhhh--c-chhccCCccceeeecCCchhcccCce-eEE
Confidence 66777777777776543 122222 3456777777776632110 1 11234467777777777776532111 111
Q ss_pred HhcCCCCccEEEecCCC
Q 010572 453 LKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~ 469 (507)
+.. -++|+.||..+-.
T Consensus 136 l~k-lp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYK-LPSLRTLDFQKVT 151 (233)
T ss_pred EEe-cCcceEeehhhhh
Confidence 211 2467777776544
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.32 E-value=0.82 Score=44.07 Aligned_cols=65 Identities=25% Similarity=0.136 Sum_probs=37.1
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~ 361 (507)
|...+.|+.|.|++|.|...+.. |. +..++|.+|.|.+|+|-.... + .-+..++.|+.|++++|.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~-L~----~~~p~l~~L~LtnNsi~~l~d-l------~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPD-LD----TFLPNLKTLILTNNSIQELGD-L------DPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCcceeeccc-hh----hhccccceEEecCcchhhhhh-c------chhccCCccceeeecCCc
Confidence 45566777777777777665543 21 224667777777777652100 0 034455566666666654
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=83.64 E-value=1.1 Score=28.09 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCCCCEEEccCCC-CCchHHHHHH
Q 010572 288 GRSLCSLKLRHCH-LDRDFGRMVF 310 (507)
Q Consensus 288 ~~sL~~L~LS~N~-L~~~g~~~L~ 310 (507)
+++|++|+|++|. ++|.|+..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4789999999985 9999988764
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.26 E-value=0.52 Score=46.84 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=34.8
Q ss_pred CCcCccccccc--h--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCC
Q 010572 350 KSLQSLRLLNL--S--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 414 (507)
Q Consensus 350 ~~L~~L~ll~l--~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~ 414 (507)
+.|+.|.+.+| + .+...++... ++|++|+|++|+|.+. +.+ ..++....|..|++.+|..+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~l--stl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDL--STL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccc--ccc-chhhhhcchhhhhcccCCcc
Confidence 34566666666 2 3333444433 7788888888888751 111 12333445778888777643
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.4 Score=42.46 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccC-CCCChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGY-NLMPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~-N~l~~~g~~~L~ 450 (507)
..++.+|=+++.|.-+|+..|- ...+++.|.+-++. +.+.+.+.++.. .++|+.|+++. -.|++.|+..|-
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~----~l~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLR----DLRSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHh----ccchhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHH
Confidence 5689999999999999988754 45668888887765 888998888873 47899999995 568999987664
Q ss_pred HHHhcCCCCccEEEecCCC
Q 010572 451 SALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~ 469 (507)
. + .+|+.|.|.+=.
T Consensus 174 ~-l----knLr~L~l~~l~ 187 (221)
T KOG3864|consen 174 K-L----KNLRRLHLYDLP 187 (221)
T ss_pred H-h----hhhHHHHhcCch
Confidence 2 2 468888886544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=2.6 Score=45.07 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=78.1
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCC-CCCCcccccccCCchhhcccCCCcCccccccc
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 360 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N-~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l 360 (507)
.+-+..+..+++|++++|.|..-. .+ + ++|++|.+++| .++. ++. .+ ..+|+.|.+.++
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sLP------~L--P-~sLtsL~Lsnc~nLts-LP~--------~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESLP------VL--P-NELTEITIENCNNLTT-LPG--------SI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcccC------CC--C-CCCcEEEccCCCCccc-CCc--------hh--hhhhhheEccCc
Confidence 344667799999999999876532 11 3 68999999875 3331 110 11 123555555544
Q ss_pred hhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 361 SHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 361 ~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
..+ ..+..+|+.|+|+.+.....+ .||. +|+.|.+.+++ .... .+...+ -++|+.|++++|
T Consensus 105 s~L-----~sLP~sLe~L~L~~n~~~~L~------~LPs--sLk~L~I~~~n~~~~~---~lp~~L--PsSLk~L~Is~c 166 (426)
T PRK15386 105 PEI-----SGLPESVRSLEIKGSATDSIK------NVPN--GLTSLSINSYNPENQA---RIDNLI--SPSLKTLSLTGC 166 (426)
T ss_pred ccc-----cccccccceEEeCCCCCcccc------cCcc--hHhheecccccccccc---cccccc--CCcccEEEecCC
Confidence 211 123367888888766654321 1332 46777775432 1110 011111 136999999987
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCC
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGN 468 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N 468 (507)
.... +-..+ | .+|+.|+++.|
T Consensus 167 ~~i~-----LP~~L--P-~SLk~L~ls~n 187 (426)
T PRK15386 167 SNII-----LPEKL--P-ESLQSITLHIE 187 (426)
T ss_pred Cccc-----Ccccc--c-ccCcEEEeccc
Confidence 7542 11112 2 47899998766
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1.2 Score=42.80 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=47.9
Q ss_pred CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccC
Q 010572 373 TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 373 ~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
..|+.|.+.+|. ++|.|...|+. -..+|+.|+|++|. ||+.|...|.+. ++|+-|.+..
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~l----knLr~L~l~~ 185 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKL----KNLRRLHLYD 185 (221)
T ss_pred chhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHHh----hhhHHHHhcC
Confidence 778888898887 78888888877 35689999999885 999998887764 6788887763
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=82.20 E-value=0.97 Score=25.69 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=4.5
Q ss_pred CCCEEEccCCCC
Q 010572 290 SLCSLKLRHCHL 301 (507)
Q Consensus 290 sL~~L~LS~N~L 301 (507)
+|+.|+|++|+|
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 345555555544
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 4e-19
Identities = 57/324 (17%), Positives = 104/324 (32%), Gaps = 40/324 (12%)
Query: 181 LQNALCVEETCQLLRE-----SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLH 234
+ L + + E + SL L L + ++ SL
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 235 CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSG-RSLC 292
L + + + L + + + NLS N S ELV L++ ++
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSL-NLS-------GNFLSYKSSDELVKTLAAIPFTIT 112
Query: 293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352
L L + +S++ L+L GN +G +S
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG------IKSSDELIQILAAIP 166
Query: 353 QSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK-EL 401
++ LNL +A L SV L++ A LG + L +
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFL-ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225
Query: 402 KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP---LESLTIICSALKVAKG 458
+V++N+ N + + L L L V Y+++ E + +A +
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ- 284
Query: 459 HLQRLDLTGNNWELQPSHVSMLSE 482
+ +D G E+ PSH +S
Sbjct: 285 KIILVDKNGK--EIHPSHSIPISN 306
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 48/331 (14%), Positives = 94/331 (28%), Gaps = 57/331 (17%)
Query: 186 CVEETCQLLRESK--LQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFV 242
E Q + + SL L ++ L ++L + SL LS
Sbjct: 38 STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97
Query: 243 EGICRSLCSKRKRIHKIENLS---------IDISSFIENCPSSV--------------VV 279
+ + ++L + I + +L + N P+S+
Sbjct: 98 DELVKTLAAIPFTITVL-DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156
Query: 280 ELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338
EL+ L++ ++ SL LR +L + L +S++ LDLS N +G
Sbjct: 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG------- 209
Query: 339 RSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVT 398
+ + V LN+ L L+
Sbjct: 210 ------LKSYAELAYIFSSIP-------------NHVVSLNLCLNCLHGPSLENLKLLKD 250
Query: 399 KELKLVNINISKNRG---GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKV 455
L + + + E K L P +++ V+ + I + ++
Sbjct: 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310
Query: 456 AKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486
G L H + + +
Sbjct: 311 LSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 2e-18
Identities = 57/313 (18%), Positives = 106/313 (33%), Gaps = 37/313 (11%)
Query: 177 RCLRLQN----ALCVEETCQLLRESK-LQSLVLRWIRFEEH-VQALCKLLIQNSETLASL 230
L+L+ A E +LR + L + E V+ LC+ L + L +L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 231 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSG 288
+ C ++ +C + SK + L + N V + + L
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKAS----LREL--ALG---SNKLGDVGMAELCPGLLHPS 255
Query: 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 348
L +L + C + G +L A SL L L+GN +G D L
Sbjct: 256 SRLRTLWIWECGITAK-GCGDLCRVLRAKESLKELSLAGNELG------DEGARLLCETL 308
Query: 349 GKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVT 398
+ L L + H ++ L + + L I L +G R L G+
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQN--RFLLELQISNNRLEDAGVRELCQGLG 366
Query: 399 KEL-KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAK 457
+ L + ++ + L+ + L E++ N + + + +++
Sbjct: 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426
Query: 458 GHLQRLDLTGNNW 470
L++L L W
Sbjct: 427 CLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 2e-18
Identities = 57/311 (18%), Positives = 105/311 (33%), Gaps = 35/311 (11%)
Query: 177 RCLRLQN----ALCVEETCQLLRESK-LQSLVLRWIRF-EEHVQALCKLLIQNSETLASL 230
+ +RL + ++ LR + L L LR + V + + L S + L
Sbjct: 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90
Query: 231 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENL-SIDISSFIENCPSSVVVELVS--FLSS 287
+C L+ + + +L + L + +S N ++L+ L
Sbjct: 91 SLQNCCLTGAGCGVLSSTLRTLP-------TLQELHLSD---NLLGDAGLQLLCEGLLDP 140
Query: 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG 347
L L+L +C L +S+L A L +S N I + + G
Sbjct: 141 QCRLEKLQLEYCSLS-AASCEPLASVLRAKPDFKELTVSNNDIN------EAGVRVLCQG 193
Query: 348 AGKSLQSLRLLNLSHI------AASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK 399
S L L L L S++ L +G+ LG G L G+
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253
Query: 400 EL-KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKG 458
+L + I + + L +++ L E++ N + E ++C L
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313
Query: 459 HLQRLDLTGNN 469
L+ L + +
Sbjct: 314 QLESLWVKSCS 324
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 53/285 (18%), Positives = 91/285 (31%), Gaps = 32/285 (11%)
Query: 197 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255
+QSL ++ + L LL + + C L+ + + I +L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNP-- 56
Query: 256 IHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSL 313
+ L++ N V V V + + L L++C L G V SS
Sbjct: 57 --ALAELNLR-----SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT-GAGCGVLSST 108
Query: 314 LEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHI------AASL 367
L +L L LS N +G D L G L L L + L
Sbjct: 109 LRTLPTLQELHLSDNLLG------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162
Query: 368 GKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKL 424
+ L + + +G RVL G+ +L + + + + L +
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222
Query: 425 MPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNN 469
+ L E+ G N + + +C L L+ L +
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 37/272 (13%)
Query: 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVS 283
S + SL+ +LS + + L + + + +D E ++ S
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQ-------QCQVVRLDDCGLTEAR----CKDISS 50
Query: 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG--GWLSKYDRSG 341
L +L L LR L V L S + L L + G
Sbjct: 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV------ 104
Query: 342 PLFSLGAGKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFR 391
L S ++L +L+ L+LS + L ++ L + L ++
Sbjct: 105 -LSS--TLRTLPTLQELHLSDNLLGDAGLQLLCEGL-LDPQCRLEKLQLEYCSLSAASCE 160
Query: 392 VLQDGVTKELKLVNINISKNRGGVETAKFLSK-LMPLAPELVEVNAGYNLMPLESLTIIC 450
L + + + +S N + L + L +L + + ++ +C
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220
Query: 451 SALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482
+ L+ L L N L ++ L
Sbjct: 221 GIVASKA-SLRELALGSNK--LGDVGMAELCP 249
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 191 CQLLRE--SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 247
C+ L E +L+SL ++ F +L QN L L+ + +L + V +C+
Sbjct: 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-FLLELQISNNRLEDAGVRELCQ 363
Query: 248 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 307
L + L + ++ L + L + SL L L + L D G
Sbjct: 364 GLGQPGS---VLRVLWLADCDVSDSS----CSSLAATLLANHSLRELDLSNNCLG-DAGI 415
Query: 308 MVFSSLLEAS-SSLSILDLSGNSIG 331
+ + L L L
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 43/320 (13%), Positives = 102/320 (31%), Gaps = 34/320 (10%)
Query: 199 LQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIH 257
++ L+ E +++ +L+++ ++ + + + ++ SK K +
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASK-KDLE 63
Query: 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS 317
S + +++ + L+ L L +++L + L
Sbjct: 64 IA-EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-PTAQEPLIDFLSKH 121
Query: 318 SSLSILDLSGNSIG----GWLSKYDRSGPLFSLGAGKSLQSLRLLNLS----------HI 363
+ L L L N +G +++ + + LR +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP--PLRSIICGRNRLENGSMKEW 179
Query: 364 AASLGKFFGTSVQVLNIGAIGLGSSGF-RVLQDGVTKELKLVNINISKNRGGVETAKFLS 422
A + + + + G+ G +L +G+ +L +++ N + L+
Sbjct: 180 AKTFQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237
Query: 423 KLMPLAPELVEVNAGYNLMPLESLTIICSALKVAK-GHLQRLDLTGNNWELQPSHVSMLS 481
+ P L E+ L+ + A + LQ L L N E++ V L
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN--EIELDAVRTLK 295
Query: 482 E-FRHNGLPILILPTLQALD 500
+P L L+
Sbjct: 296 TVIDEK------MPDLLFLE 309
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 44/234 (18%), Positives = 77/234 (32%), Gaps = 23/234 (9%)
Query: 193 LLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251
LL+ KL ++ L F + L L +++ L L + L P I R+L
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 252 KRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 310
+ N + + E S R L ++K+ + + +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 311 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLS-------- 361
L L +LDL N+ S L KS +LR L L+
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSA--------LAIALKSWPNLRELGLNDCLLSARG 260
Query: 362 --HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV-TKELKLVNINISKNR 412
+ + K +Q L + + R L+ + K L+ + ++ NR
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 27/175 (15%)
Query: 316 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN-------LSHIAASLG 368
A S+ L ++I D L S++ + L ++ ++
Sbjct: 2 ARFSIEGKSLKLDAIT----TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA 57
Query: 369 KFFGTSVQVLNIGAIGLGS------SGFRVLQDGVTKELKLVNINISKNRGGVETAKFLS 422
+++ I G R+L + K KL + +S N G + L
Sbjct: 58 SK--KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115
Query: 423 KLMPLAPELVEVNAGYNLMPLESLTIICSALK--------VAKGHLQRLDLTGNN 469
+ L + N + ++ I AL+ L+ + N
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 191 CQLLRESK-LQSLVLRW--IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 247
+ + + L ++ + IR E L + L L L+ + +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAI 238
Query: 248 SLCSKRKRIHKIENLSIDISSFIENCP--SSVVVELVSFLSSG--RSLCSLKLRHCHLDR 303
+L S + L ++ +C + +V S L +L+L++ ++
Sbjct: 239 ALKSWPN----LRELGLN------DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288
Query: 304 DFGRMVFSSLLEASSSLSILDLSGNSIG 331
D R + + + E L L+L+GN
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 50/335 (14%), Positives = 104/335 (31%), Gaps = 52/335 (15%)
Query: 164 KLSYHCQQFGHYARCLRLQNALCVEETCQLLRE--SKLQSLVLRWIRF-EEHVQALCKLL 220
KL +Q + L + + E S L+ L L +R + +L
Sbjct: 37 KLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVL 96
Query: 221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE 280
L + C+L P+ + + RK + + N +
Sbjct: 97 GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK---------LGLQ---LNSLGPEACK 144
Query: 281 LVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338
+ L + +L+L + L G V L ++S++ L L +G D
Sbjct: 145 DLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTGLG------D 197
Query: 339 RSGPLFSLGAGKSLQSLRLLNLSH----------IAASLGKFFGTSVQVLNIGAIGLGSS 388
L + + L+ LN+++ +A + + S+++L++ L S
Sbjct: 198 EGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALARAARE--HPSLELLHLYFNELSSE 254
Query: 389 GFRVLQDG---VTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA--------- 436
G +VL+D ++V + LS++
Sbjct: 255 GRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLR 314
Query: 437 --GYNLMPLESLTIICSALKVAKGHLQRLDLTGNN 469
+ + L+V +G ++ L +
Sbjct: 315 DLEDSRGATLNPWRKAQLLRV-EGEVRALLEQLGS 348
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 42/307 (13%), Positives = 83/307 (27%), Gaps = 80/307 (26%)
Query: 31 ELPADLFDILLTCLPPLALQK--LQTKM---PFRDGDDCGSPDYCFENGRKRGRYGNFNT 85
L D LP L + + RDG + N+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---------------TWDNWKH 349
Query: 86 VWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTI 145
V T + +EP ++++ + L V P +I +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFD------------RLSVFP------PSAHIPTIL 391
Query: 146 L-----NYIGYEQQ--MNHLACDYS---------KLSYHCQQFGHYARCLRLQ--NALCV 187
L + I + +N L YS +S + + V
Sbjct: 392 LSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 188 EETCQLLRESKLQSLVLRWIR------FEEHVQALCKLLIQNSETLASLEFLHCKLSPSF 241
+ + + L+ ++ H++ I++ E + + L F
Sbjct: 451 DHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVF--LDFRF 502
Query: 242 VEGICRSLCSKRKRIHKIENLSIDI---SSFI-ENCP--SSVVVELVSFLSSGRSLCSLK 295
+E R + I N + +I +N P +V ++ FL
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--- 559
Query: 296 LRHCHLD 302
+ + D
Sbjct: 560 ICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 63/381 (16%), Positives = 111/381 (29%), Gaps = 92/381 (24%)
Query: 156 NHLACDYSKLSYHC--------QQFGHYARCLR----LQNALCVEETCQLLRES--KLQS 201
+H+ + + Y F C ++ L EE ++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 202 LVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF---VEGI---CRSLCSKRKR 255
L L W LL + E + +F+ L ++ + I R +
Sbjct: 65 LRLFWT-----------LLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 256 -IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC--HLDRDFGRMVF-- 310
I + + L D F +V R LKLR L ++
Sbjct: 112 YIEQRDRLYNDNQVFA---KYNVS----------RLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 311 -----SSL-LEASSSLSILDLSGNSIGGWLS--KYDRSGPLFSLGAGKSLQSLRLLNLSH 362
+ + L+ S + I WL+ + + + LQ L L +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVL-----EMLQKL-LYQIDP 211
Query: 363 IAASLGKFFGTSVQVLNIGAIGL----GSSGFR----VLQDGV--TKELKLVNIN----- 407
S ++ L S + VL V K N++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILL 270
Query: 408 ISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTG 467
++ + FLS L + L P E +++ L L R LT
Sbjct: 271 TTRFKQ---VTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 468 NNWELQPSHVSMLSEFRHNGL 488
N P +S+++E +GL
Sbjct: 326 N-----PRRLSIIAESIRDGL 341
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 9e-07
Identities = 57/366 (15%), Positives = 115/366 (31%), Gaps = 104/366 (28%)
Query: 20 LLGDDVIPYVYELPAD------LFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCF-- 71
+L + I ++ LF LL+ Q+ + + +Y F
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLS------KQEEMVQKFVEEVLR---INYKFLM 95
Query: 72 ------ENGR---------KRGRYGNFNTVWKKLFKTRWSGFTD------QIEPVDWQQR 110
+ +R R N N V+ K +R + ++ P
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--- 152
Query: 111 YWEAHVQG-------CLDEAAELV----VLPSFRGLISDINIS-----DTILNYIGYEQQ 154
+ G + A ++ V I +N+ +T+L +
Sbjct: 153 ---VLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EM 201
Query: 155 MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQS--LVLRWIRFEEH 212
+ L ++ + ++ ++L+ E +LL+ ++ LVL ++ +
Sbjct: 202 LQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 213 VQAL---CKLLI-----QNSETLASLEFLHCKL---SPSFVEGICRSLCSKRKRIHKIEN 261
A CK+L+ Q ++ L++ H L S + +SL K
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--------Y 310
Query: 262 LSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR-DFGRMVFSSLLEA--SS 318
L P V+ + S+ + +R L D + V L S
Sbjct: 311 LDCRPQDL----PREVL--TTNPRRL--SIIAESIRD-GLATWDNWKHVNCDKLTTIIES 361
Query: 319 SLSILD 324
SL++L+
Sbjct: 362 SLNVLE 367
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 72/499 (14%), Positives = 139/499 (27%), Gaps = 158/499 (31%)
Query: 9 SLAALAVKRELLLG--DDVIPYV----YELPADLFDILLTCLPPLALQKLQTKMPFRDGD 62
+A + D I ++ P + ++L QKL ++ D +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---------QKLLYQI---DPN 212
Query: 63 DCGSPDYC------FENGRKRGR-------YGN----FNTVW------------KKLFKT 93
D+ + + R Y N V K L T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 94 RWSGFTDQIEPVDWQQRYWEAHVQG-CLDEAAELVV---------LPSFRGLISDIN--- 140
R+ TD + + H DE L++ LP + N
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRR 329
Query: 141 ---ISDTILNYIGYEQQMNHLACD----YSKLSYHCQQFGHYARCLRLQNALCVEETCQL 193
I+++I + + H+ CD + S + + Y + + +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---------DRLSV 380
Query: 194 LRES---KLQSLVLRWIRFEEH-----VQALC-KLLI--QNSETLASLEFLHCKLSPSFV 242
S L L W + V L L+ Q E+ S+ ++ +L
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL----- 435
Query: 243 EGICRSLCSKRKRIHK--IENLSIDISSFIENCPSSVVVE-LVSFLSSGRSLCSLKLRHC 299
+ +H+ +++ +I + ++ + + S + G L + H
Sbjct: 436 ----KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHL--KNIEHP 487
Query: 300 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL-SKYDRSGPLFSLGAG--KSLQSLR 356
F RMVF LD +L K ++ +LQ L+
Sbjct: 488 ERMTLF-RMVF------------LDFR------FLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 357 LLNLSHIA----------ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNI 406
+I ++ F + I + S K L+ I
Sbjct: 529 FYK-PYICDNDPKYERLVNAILDF------LPKIEENLICS-----------KYTDLLRI 570
Query: 407 NISKNRGGV--ETAKFLSK 423
+ + E K + +
Sbjct: 571 ALMAEDEAIFEEAHKQVQR 589
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 58/302 (19%), Positives = 94/302 (31%), Gaps = 78/302 (25%)
Query: 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 256
Q L L +F + ++L L F K +F E SL
Sbjct: 304 FGWQHLELVNCKFGQ-------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL------- 349
Query: 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA 316
+ +LS + SF C S SL L L + SS
Sbjct: 350 -EFLDLSRNGLSFKGCCSQS--------DFGTTSLKYLDLSFNGVIT------MSSNFLG 394
Query: 317 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH--IAASLGKFFG-- 372
L LD +++ + SL++L L++SH + F
Sbjct: 395 LEQLEHLDFQHSNLKQ----------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLA---- 428
+S++VL + + L D T+ L +++S+ + L +L P A
Sbjct: 445 SSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQ--------LEQLSPTAFNSL 493
Query: 429 PELVEVNAGYN---------LMPLESLT-----------IICSALKVAKGHLQRLDLTGN 468
L +N +N L SL L+ L L+LT N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 469 NW 470
++
Sbjct: 554 DF 555
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 30/190 (15%), Positives = 65/190 (34%), Gaps = 24/190 (12%)
Query: 197 SKLQSLVLRW--IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254
KLQ+L LR + + ++ + + L +L ++ + +
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDI-FLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420
Query: 255 RIHKIENL-SIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 312
+ ++ +L + ++ +C S SL L L L + +
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGD------QTPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 313 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH--IAASLGKF 370
+ E S L +L L+ N + G L +LR L+L+ +
Sbjct: 475 VFEGLSHLQVLYLNHNYLNS-----------LPPGVFSHLTALRGLSLNSNRLTVLSHND 523
Query: 371 FGTSVQVLNI 380
++++L+I
Sbjct: 524 LPANLEILDI 533
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 43/326 (13%), Positives = 100/326 (30%), Gaps = 62/326 (19%)
Query: 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 256
S ++ L LR + E + ++ L + S + L + I
Sbjct: 196 SSVRYLELRDTNLAR----FQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYI 250
Query: 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA 316
++ + D + N +S + ++ +R H+ + + S++
Sbjct: 251 LELSEVEFDDCTL--NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308
Query: 317 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH-----IAASLGKFF 371
+ + + + + L + L+SL L+LS
Sbjct: 309 LEKVKRITVENSKV-----------FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357
Query: 372 G--TSVQVLN-----IGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKL 424
G S+Q L + ++ L+ L +++IS+N +
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLK-------NLTSLDISRNT--------FHPM 402
Query: 425 MP---LAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLS 481
++ +N + ++ + + L+ LD++ NN + + L
Sbjct: 403 PDSCQWPEKMRFLNLSST-----GIRVVKTCI---PQTLEVLDVSNNNLDSFSLFLPRLQ 454
Query: 482 E--FRHNGL----PILILPTLQALDV 501
E N L + P L + +
Sbjct: 455 ELYISRNKLKTLPDASLFPVLLVMKI 480
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 38/258 (14%), Positives = 79/258 (30%), Gaps = 41/258 (15%)
Query: 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL 285
L L S + ++ ++L +H++ +E S++
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLH--VHRLILGEFKDERNLEIFEPSIM------- 255
Query: 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI--------GGWLSKY 337
LC + + L +++S + L+G SI
Sbjct: 256 ---EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSL 312
Query: 338 DRSGPLFSLGAGKSLQSLRLLNLSH--IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 395
L L+ L L+ + S K S+ L+ L +
Sbjct: 313 SIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD-----LSRNALSFSGC 367
Query: 396 GVTKELKLVN---INISKNRGGVETAKFLSKLMPLAPELVEVNAGYN-LMPLESLTIICS 451
+L + +++S N + +A F+ EL ++ ++ L + + S
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMG-----LEELQHLDFQHSTLKRVTEFSAFLS 422
Query: 452 ALKVAKGHLQRLDLTGNN 469
L+ L LD++ N
Sbjct: 423 -LE----KLLYLDISYTN 435
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 35/194 (18%)
Query: 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 342
+ L L +H L R F SL L LD+S +
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL----EKLLYLDISYTNTKIDFD------- 441
Query: 343 LFSLGAGKSLQSLRLLNLSH---IAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGV 397
G L SL L ++ +L F T++ L+ L + GV
Sbjct: 442 ----GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD-----LSKCQLEQISWGV 492
Query: 398 TKELK-LVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVA 456
L L +N+S N + ++L L ++ +N + L+
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQL----YSLSTLDCSFN-----RIETSKGILQHF 543
Query: 457 KGHLQRLDLTGNNW 470
L +LT N+
Sbjct: 544 PKSLAFFNLTNNSV 557
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 43/223 (19%), Positives = 69/223 (30%), Gaps = 53/223 (23%)
Query: 261 NLSIDISSFIENCPS-----------SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 309
+ PS V S R+L L L + ++ + +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI-ANINDDM 499
Query: 310 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK 369
L L ILDL N++ + GP++ L K L L +LNL
Sbjct: 500 LEGL----EKLEILDLQHNNLARLWKHANPGGPIYFL---KGLSHLHILNLES------- 545
Query: 370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELK-LVNINISKNRGGVETAKFLSKLMPLA 428
N GF + V K+L L I++ N A +
Sbjct: 546 ---------N---------GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ---- 583
Query: 429 PELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 471
L +N NL+ ++ A +L LD+ N ++
Sbjct: 584 VSLKSLNLQKNLIT----SVEKKVFGPAFRNLTELDMRFNPFD 622
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 49/289 (16%), Positives = 88/289 (30%), Gaps = 46/289 (15%)
Query: 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELV 282
N A +E S ++ + + I++LS+ + S ++
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP 342
+ L L L + + G L L+IL+L S +
Sbjct: 89 LRVLGISGLQELTLENLEVT---GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145
Query: 343 LFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELK 402
L++L+++ A F V+V
Sbjct: 146 W-------LKPGLKVLSIAQ--AHSLNFSCEQVRVFP----------------------A 174
Query: 403 LVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462
L +++S N E + P L + +E+ + +CSAL A+ LQ
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG--METPSGVCSALAAARVQLQG 232
Query: 463 LDLTGNN-----WELQPSHVSMLSEF--RHNGLPIL---ILPTLQALDV 501
LDL+ N+ S L+ GL + + L LD+
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 38/191 (19%)
Query: 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA 348
L L L L + F +L L +L+LS + + S
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNL----HLLKVLNLSHSLLDI-----------SSEQL 444
Query: 349 GKSLQSLRLLNLSH------IAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKEL 401
L +L+ LNL +++L L + L
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV-----LSFCDLSSIDQHAFTSL 499
Query: 402 -KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHL 460
+ ++++S NR + + LS L + + +N N ++II +L
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHL-----KGIYLNLASN-----HISIILPSLLPILSQQ 549
Query: 461 QRLDLTGNNWE 471
+ ++L N +
Sbjct: 550 RTINLRQNPLD 560
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.93 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.92 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.9 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.84 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.83 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.8 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.79 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.77 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.75 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.73 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.63 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.63 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.6 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.59 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.57 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.55 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.53 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.52 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.51 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.5 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.49 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.48 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.48 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.47 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.46 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.46 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.46 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.44 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.44 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.43 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.42 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.42 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.41 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.41 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.41 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.4 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.39 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.39 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.37 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.37 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.37 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.37 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.36 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.36 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.36 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.36 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.36 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.35 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.35 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.35 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.35 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.35 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.34 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.34 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.34 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.34 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.33 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.33 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.32 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.32 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.32 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.31 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.31 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.31 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.3 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.29 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.28 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.28 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.25 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.25 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.24 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.24 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.23 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.22 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.21 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.2 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.19 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.17 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.16 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.16 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.15 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.14 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.14 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.12 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.11 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.09 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.08 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.08 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.08 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.07 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.06 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.04 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.01 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.98 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.97 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.95 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 98.91 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.88 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.86 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.86 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.84 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.82 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.81 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.78 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.75 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.74 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.72 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.71 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.71 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.71 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.7 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.68 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.68 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.67 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.63 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.61 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.6 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.55 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.51 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.5 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.49 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.46 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.44 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.37 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.36 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.34 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.32 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.31 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.22 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.14 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.12 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.09 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.06 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.06 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.98 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.78 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.44 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.26 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.96 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.94 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 95.21 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 94.44 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 92.97 | |
| 4hfx_A | 97 | Transcription elongation factor B polypeptide 3; s | 84.94 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 84.01 |
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=228.62 Aligned_cols=274 Identities=18% Similarity=0.146 Sum_probs=169.7
Q ss_pred CCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 197 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
+.|++|+++++.. ..++..+...+. .+++|++|+|++|.+++.++..++..+.... +.++.|+++.+.+.+..
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l~~~~-- 215 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSP---CQLEALKLESCGVTSDN-- 215 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSC---CCCCEEECTTSCCBTTH--
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCC---CCceEEEccCCCCcHHH--
Confidence 3577777766643 334444444443 3467777777777777777777766655321 25677777666543211
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
...+..++..+++|++|+|++|.+++.|+..++.++.+..++|++|+|++|.|++... ..+..++..+++|++|
T Consensus 216 --~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 216 --CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKEL 289 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEE
T ss_pred --HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH----HHHHHHHhhCCCcceE
Confidence 1235667778888888888888888888888887776667888888888888875211 1112245556666666
Q ss_pred ccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCC-C
Q 010572 356 RLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPL-A 428 (507)
Q Consensus 356 ~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~-n 428 (507)
.+.++. .+...++..+. ++|++|+|++|.+++.|+..++.++..+.+|++|+|++|.+++.++..+++++.. +
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 666654 34444544443 4666666666666666666666666666666666666666666666666665543 4
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 429 PELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 429 ~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
++|++|++++|.++++|+..+..++... .+|++|+|++|.+ +..++..+.+...
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~N~i--~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLAN-HSLRELDLSNNCL--GDAGILQLVESVR 423 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHC-CCCCEEECCSSSC--CHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhC-CCccEEECCCCCC--CHHHHHHHHHHhc
Confidence 4566666666666666666666666554 4566666666653 5555555544443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=225.83 Aligned_cols=280 Identities=17% Similarity=0.190 Sum_probs=170.0
Q ss_pred CcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 198 KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 198 ~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
.|++|+++++.. +.++..+...+ ..+++|++|+|++|.+++.++..++..+..+. +.++.|+++.+.+.+.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l~~~---- 157 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ---CRLEKLQLEYCSLSAA---- 157 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT---CCCCEEECTTSCCBGG----
T ss_pred ceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCC---CcceEEECCCCCCCHH----
Confidence 356666655532 23333333333 34456666666666666655555555544321 2355555554443221
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcc---------
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG--------- 347 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~--------- 347 (507)
....+..++..+++|++|+|++|.+++.++..++.++..+.++|++|+|++|.+++... ..+...+.
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC----RDLCGIVASKASLRELA 233 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH----HHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH----HHHHHHHHhCCCccEEe
Confidence 01224445555556666666666666555555555554444556666666665553110 00001122
Q ss_pred --------------------cCCCcCccccccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCC-C
Q 010572 348 --------------------AGKSLQSLRLLNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKE-L 401 (507)
Q Consensus 348 --------------------~~~~L~~L~ll~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n-~ 401 (507)
.+++|++|.+.++. .++..++..+. ++|++|+|++|.+++.|...+++.+..+ .
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 24445555555543 34444555554 6677777777777777777777766654 4
Q ss_pred CCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHH
Q 010572 402 KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLS 481 (507)
Q Consensus 402 ~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~ 481 (507)
+|++|+|++|.+++.++..++..+..+++|++|++++|.+++.|+..++++++.+.++|++|+|++|.+ +++++..++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i--~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV--SDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC--CHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC--ChhhHHHHH
Confidence 677777777777777777777777777889999999999999999999999987667899999999984 888888887
Q ss_pred HHHHcCCCeE
Q 010572 482 EFRHNGLPIL 491 (507)
Q Consensus 482 ~~~~~~~~i~ 491 (507)
+...+.+.+.
T Consensus 392 ~~l~~~~~L~ 401 (461)
T 1z7x_W 392 ATLLANHSLR 401 (461)
T ss_dssp HHHHHCCCCC
T ss_pred HHHHhCCCcc
Confidence 7766666653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-24 Score=218.58 Aligned_cols=277 Identities=16% Similarity=0.165 Sum_probs=204.4
Q ss_pred ccCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCC------hhHHHHHHHHhccCCcccccccceecccc
Q 010572 195 RESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLS------PSFVEGICRSLCSKRKRIHKIENLSIDIS 267 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls------~~~~~~L~~~L~~~~~~~~~l~~L~l~~~ 267 (507)
....|++|+|+++.. ..+...+...+ ..+++|++|+|++|.++ +.++..++.++... ..++.|+++.+
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~----~~L~~L~Ls~n 104 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC----PKLHTVRLSDN 104 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC----TTCCEEECCSC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC----CcccEEECCCC
Confidence 345788888887743 34444444444 45678888888887544 34666666666543 35778887776
Q ss_pred ccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCC---------CCccEEECcCCCCCC-ccccc
Q 010572 268 SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS---------SSLSILDLSGNSIGG-WLSKY 337 (507)
Q Consensus 268 ~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~---------~~L~~LdLS~N~L~~-~l~~~ 337 (507)
.+.+.+ ...++..+..+++|++|+|++|.+++.++..++..+.. . ++|++|+|++|.|++ .+..
T Consensus 105 ~l~~~~----~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~- 178 (386)
T 2ca6_A 105 AFGPTA----QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE-LAVNKKAKNAPPLRSIICGRNRLENGSMKE- 178 (386)
T ss_dssp CCCTTT----HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHH-HHHHHHHHTCCCCCEEECCSSCCTGGGHHH-
T ss_pred cCCHHH----HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHH-HhhhhhcccCCCCcEEECCCCCCCcHHHHH-
Confidence 653321 12356677888888888888888888888777766532 3 688888888888873 2211
Q ss_pred ccCCchhhcccCCCcCccccccch---hHHHHHHh-hhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 338 DRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGK-FFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 338 ~~~~l~~~L~~~~~L~~L~ll~l~---~~~~~L~~-~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
++.++..+++|++|.+.++. .++..+.. .+. ++|++|+|++|.|++.|+..++.++..+.+|++|+|++|
T Consensus 179 ----l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 179 ----WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp ----HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred ----HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 22356667778888777765 35555555 555 889999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhCCC--CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 412 RGGVETAKFLSKLMPL--APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~--n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
.+++.|+..++..+.. +++|++|+|++|.|++.|+..+..++..+.++|+.|+|++|.+......+..+.+...+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 9999999999998855 88999999999999999999999999655478999999999973222224555554444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=223.40 Aligned_cols=266 Identities=20% Similarity=0.177 Sum_probs=214.0
Q ss_pred hhhccC-CcCeeecccccC-hhhHHHHHHHHhhCCC-CccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccc
Q 010572 192 QLLRES-KLQSLVLRWIRF-EEHVQALCKLLIQNSE-TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS 268 (507)
Q Consensus 192 ~ll~~~-~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~-~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~ 268 (507)
...... .|++|+++++.. +.+...++..+. +++ +|++|+|++|.+++.++..++..+... ...++.|+++.|.
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAI---PANVTSLNLSGNF 91 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---CTTCCEEECCSSC
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhcc---CCCccEEECcCCc
Confidence 334444 499999998854 445556666665 455 899999999999999999988887654 1368999998887
Q ss_pred cccCCCCcchHHHHHHHhCC-CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcc
Q 010572 269 FIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG 347 (507)
Q Consensus 269 ~le~~~~~l~~~L~~~L~~~-~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~ 347 (507)
+.+. ....++.++..+ ++|++|+|++|.+++.++..++.++....++|++|+|++|.|++.... .+..++.
T Consensus 92 l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~ 163 (362)
T 3goz_A 92 LSYK----SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD----ELIQILA 163 (362)
T ss_dssp GGGS----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH----HHHHHHH
T ss_pred CChH----HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH----HHHHHHh
Confidence 6432 234577788888 899999999999999999999888765347999999999999953221 1223455
Q ss_pred cCC-CcCccccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcC-CCCCCEEeccCCCCChHHHH
Q 010572 348 AGK-SLQSLRLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAK 419 (507)
Q Consensus 348 ~~~-~L~~L~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~i~~~g~~ 419 (507)
... +|++|.+.++. .+...++..+. ++|++|+|++|.|++.|+..++.++.. +.+|++|+|++|.+++.|++
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 444 78888887775 45556666654 489999999999999999999999987 45899999999999999999
Q ss_pred HHHhhCCCCCCccEEEccCCC---CChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 420 FLSKLMPLAPELVEVNAGYNL---MPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 420 ~L~~~L~~n~~L~~L~Ls~N~---l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.++..+++|++|+|++|. ++++++..+.+++... .+|+.|||++|.+
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l-~~L~~LdL~~N~l 296 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI-QKIILVDKNGKEI 296 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC-CEEEEECTTSCBC
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC-CceEEEecCCCcC
Confidence 999999999999999999998 8888999998888855 6799999999997
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-24 Score=219.60 Aligned_cols=270 Identities=18% Similarity=0.133 Sum_probs=199.2
Q ss_pred eeEEEEeccCcchh----hh-hhhhccC-CcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHH
Q 010572 175 YARCLRLQNALCVE----ET-CQLLRES-KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 247 (507)
Q Consensus 175 ~v~~L~L~~~l~~~----~~-~~ll~~~-~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~ 247 (507)
.++.|+|....-.. .+ ..+.... .|++|+++++.. +.+...++..+....++|++|+|++|.+++..+..++.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48888887522111 11 1223344 789999988754 34455666665444478999999999999888888887
Q ss_pred HhccCCcccccccceeccccccccCCCCcchHHHHHHHhC-CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECc
Q 010572 248 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 326 (507)
Q Consensus 248 ~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~-~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS 326 (507)
.+.... ..++.|+++.|.+.+.. ...+..++.. +++|++|+|++|.+++.|+..++.++....++|++|+|+
T Consensus 103 ~l~~~~---~~L~~L~Ls~N~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 103 TLAAIP---FTITVLDLGWNDFSSKS----SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHTSC---TTCCEEECCSSCGGGSC----HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHhCC---CCccEEECcCCcCCcHH----HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 776531 35888888887764321 2346667777 468999999999999999988888886654589999999
Q ss_pred CCCCCCcccccccCCchhhcccC-CCcCccccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcC
Q 010572 327 GNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTK 399 (507)
Q Consensus 327 ~N~L~~~l~~~~~~~l~~~L~~~-~~L~~L~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~ 399 (507)
+|.|++... ..++.++..+ ++|++|.+.+|. .++..++.++. ++|++|+|++|.|++.|.+.++..+..
T Consensus 176 ~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 176 GNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp TSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred CCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 999885332 1223355556 478888887775 45556666654 589999999999999999888888888
Q ss_pred CCCCCEEeccCCC---CChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhc
Q 010572 400 ELKLVNINISKNR---GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKV 455 (507)
Q Consensus 400 n~~L~~LdLs~N~---i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~ 455 (507)
..+|++|+|++|. ++..+...+.+.+..+++|+.||+++|.+++.+...++.+++.
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 8889999999998 8888888888888888889999999999998887777777765
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=213.10 Aligned_cols=268 Identities=15% Similarity=0.102 Sum_probs=212.8
Q ss_pred hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchH---HHHHHHh
Q 010572 210 EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLS 286 (507)
Q Consensus 210 ~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~---~L~~~L~ 286 (507)
+.++..++..+. .+++|++|+|++|.+++.++..+...+... ..++.|+++.+.+.... ..++. .++.++.
T Consensus 18 ~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~----~~L~~L~Ls~~~~~~l~-~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 18 TEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASK----KDLEIAEFSDIFTGRVK-DEIPEALRLLLQALL 91 (386)
T ss_dssp SHHHHTTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCG-GGSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhC----CCccEEeCcccccCccc-cchhHHHHHHHHHHh
Confidence 456666666664 458899999999999999999998887653 35888888765432111 12232 3567788
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccC---------CCcCcccc
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG---------KSLQSLRL 357 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~---------~~L~~L~l 357 (507)
.+++|++|+|++|.+++.|+..+...+.. .++|++|+|++|.|++.... .+...+..+ ++|++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~----~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGA----KIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHH----HHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHH----HHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 99999999999999999999988887754 59999999999999843211 111133333 67888888
Q ss_pred ccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHH-hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCc
Q 010572 358 LNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQD-GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 358 l~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~-aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.++. .+...++..+. .+|++|+|++|+|++.|+..++. ++....+|++|+|++|.+++.|+..+...+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 7775 45556666665 79999999999999999999888 888899999999999999999999999999999999
Q ss_pred cEEEccCCCCChhHHHHHHHHHhc-CCCCccEEEecCCCCCCCccHHHHHHHHH-HcCCCe
Q 010572 432 VEVNAGYNLMPLESLTIICSALKV-AKGHLQRLDLTGNNWELQPSHVSMLSEFR-HNGLPI 490 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~-~~~~L~~LdL~~N~~~~~~~~~~~l~~~~-~~~~~i 490 (507)
++|+|++|.|++.|+..++.+++. +.++|+.|+|++|.+ +..++..+.+.. .+-+.+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i--~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI--ELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC--BHHHHHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC--CHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999975 236899999999995 777888776655 444555
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=215.70 Aligned_cols=223 Identities=21% Similarity=0.231 Sum_probs=176.9
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.+|++|+|++|.+++..+..+...|.... ..++.|+++.|.+.+ .++.......++|++|+|++|.|++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~---~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGR---HALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCS---SCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCC---CCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 56889999999999988888888877542 357888887766422 11112222334799999999999999
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
|+..++.++..+.++|++|+|++|.|++ .++..++.++. ++|++|+|++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-----------------------------~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTA-----------------------------AGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHH-----------------------------HHHHHHHHHHHTCSSCCEEECTT
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCCh-----------------------------HHHHHHHHHHhcCCCcCEEeCCC
Confidence 9999999987777999999999999974 23445555554 7899999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.|++.|+..|++++..+.+|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..|+++...+.|.|+.
T Consensus 193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~ 272 (372)
T 3un9_A 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272 (372)
T ss_dssp SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEE
T ss_pred CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876654466999
Q ss_pred EE--ecCCCCCCCccHHHHHHHHHHcCC
Q 010572 463 LD--LTGNNWELQPSHVSMLSEFRHNGL 488 (507)
Q Consensus 463 Ld--L~~N~~~~~~~~~~~l~~~~~~~~ 488 (507)
+. +.+|.+ +.+....+.+++++-.
T Consensus 273 l~~ll~~~~~--~~~~~~~l~~l~~~~~ 298 (372)
T 3un9_A 273 VVSLTEGTAV--SEYWSVILSEVQRNLN 298 (372)
T ss_dssp ECCCC----C--HHHHHHHHHHHHHHST
T ss_pred hHhhhcCCcc--CHHHHHHHHHHHHHhh
Confidence 98 888874 7777778888887743
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-21 Score=197.91 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=136.4
Q ss_pred HHHHHhCC-CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccccc
Q 010572 281 LVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (507)
Q Consensus 281 L~~~L~~~-~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~ 359 (507)
++.+|... ++|++|+|++|.+++.|+..++.++ .+|++|+|++|.|++
T Consensus 92 l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----~~L~~L~Ls~n~l~~--------------------------- 140 (372)
T 3un9_A 92 VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF----LRARKLGLQLNSLGP--------------------------- 140 (372)
T ss_dssp HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH----HTEEEEECCSSCCCH---------------------------
T ss_pred HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH----HhccHhhcCCCCCCH---------------------------
Confidence 34444433 4566666666666665555555444 245566666665553
Q ss_pred chhHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 360 LSHIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 360 l~~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
.++..++.++. ++|++|+|++|.|++.|+..++.++..+.+|++|+|++|.|++.|+..|+.++..+++|++|+|
T Consensus 141 --~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 141 --EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp --HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred --HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 35566666663 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 437 GYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 437 s~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
++|.|++.|+..++++++.+ ++|++|||++|.+ ++.++..++++.+.+
T Consensus 219 s~N~i~~~g~~~l~~~L~~~-~~L~~L~Ls~N~i--~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREH-PSLELLHLYFNEL--SSEGRQVLRDLGGAA 266 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHC-SSCCEEECTTSSC--CHHHHHHHHHCC---
T ss_pred CCCCCCHHHHHHHHHHHHhC-CCCCEEeccCCCC--CHHHHHHHHHHhcCC
Confidence 99999999999999999876 5799999999994 999999999887765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=175.03 Aligned_cols=148 Identities=12% Similarity=0.169 Sum_probs=113.6
Q ss_pred chHHHHHHHhCCCCCCEEEccCC-CCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N-~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+...++.++..+++|++|+|++| .++++|+..++.++.. .++|++|+|++|.|++
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~----------------------- 79 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSND----------------------- 79 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCH-----------------------
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCCh-----------------------
Confidence 34567888999999999999999 9999999999998865 4788888888888774
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec--cCCCCChHHHHHHHhhCCCCCCc
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI--SKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL--s~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.++.+++.++. ++|++|+|++|.|++.|+..|+++|..+.+|++|+| ++|.|+++|+..|++++..+++|
T Consensus 80 ------~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L 153 (185)
T 1io0_A 80 ------PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL 153 (185)
T ss_dssp ------HHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred ------HHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCc
Confidence 24445555554 667777777777777777777777777777777777 66777777777777777777777
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcC
Q 010572 432 VEVNAGYNLMPLESLTIICSALKVA 456 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~~ 456 (507)
++|+|++|.++++|+ ++++++.|
T Consensus 154 ~~L~L~~n~i~~~~~--i~~~L~~N 176 (185)
T 1io0_A 154 LKFGYHFTQQGPRLR--ASNAMMNN 176 (185)
T ss_dssp CEEECCCSSHHHHHH--HHHHHHHH
T ss_pred CEEeccCCCCChHHH--HHHHHHhh
Confidence 777777777777764 66666654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=170.86 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=85.3
Q ss_pred hHHHHHHHhCCCCCCEEEccCC-CCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 278 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N-~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
...+..++..+++|++|+|++| .|+++|++.+|++|..+ +.|++|+|++|.|+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~ig------------------------- 83 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS------------------------- 83 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB-------------------------
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCC-------------------------
Confidence 3457888899999999999995 99999999999998644 66666666555554
Q ss_pred cccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 357 LLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
+.|+++|+++|..|.+|++|+|+.|.|+++|+..|+++|+.|++|++|+|
T Consensus 84 ------------------------------d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 84 ------------------------------DSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp ------------------------------HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEEC
T ss_pred ------------------------------hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEEC
Confidence 44445555555555555555555555555555555555555555555555
Q ss_pred cCC---CCChhHHHHHHHHHhcCCCCccEEEecCCC
Q 010572 437 GYN---LMPLESLTIICSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 437 s~N---~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~ 469 (507)
++| .+|++|++.|+++|+.| ++|++|+|+.|.
T Consensus 134 ~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~ 168 (197)
T 1pgv_A 134 DNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS 168 (197)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred CCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence 432 44555555555555554 345555554443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-19 Score=164.36 Aligned_cols=148 Identities=14% Similarity=0.030 Sum_probs=128.1
Q ss_pred hHHHHHHHHhccCCCCccEEECcCC-CCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEe
Q 010572 304 DFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNI 380 (507)
Q Consensus 304 ~g~~~L~~~L~~~~~~L~~LdLS~N-~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~L 380 (507)
...+.++..+. ..++|++|+|++| .|++ .++..++.++. ++|++|+|
T Consensus 23 ~~~~~l~~~l~-~~~~L~~L~L~~n~~i~~-----------------------------~g~~~l~~~L~~~~~L~~L~L 72 (185)
T 1io0_A 23 DVEETLKRIQN-NDPDLEEVNLNNIMNIPV-----------------------------PTLKACAEALKTNTYVKKFSI 72 (185)
T ss_dssp CHHHHHHHHHT-TCTTCCEEECTTCTTCCH-----------------------------HHHHHHHHHHTTCCSCCEEEC
T ss_pred HHHHHHHHHHh-cCCCCCEEEecCCCCCCH-----------------------------HHHHHHHHHHHhCCCcCEEEC
Confidence 34455666664 4599999999999 9985 35566777766 88999999
Q ss_pred ccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc--cCCCCChhHHHHHHHHHhcCCC
Q 010572 381 GAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA--GYNLMPLESLTIICSALKVAKG 458 (507)
Q Consensus 381 s~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L--s~N~l~~~g~~~L~~aL~~~~~ 458 (507)
++|.|++.|+..|+++|..+.+|++|+|++|.|+++|+..|++++..+++|++|+| ++|.|+++|+..|+++++.+ .
T Consensus 73 s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-~ 151 (185)
T 1io0_A 73 VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-T 151 (185)
T ss_dssp TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-S
T ss_pred cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-C
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999987 6
Q ss_pred CccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 459 HLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 459 ~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
+|++|+|++|.+ +++++ +++..+.
T Consensus 152 ~L~~L~L~~n~i--~~~~~--i~~~L~~ 175 (185)
T 1io0_A 152 TLLKFGYHFTQQ--GPRLR--ASNAMMN 175 (185)
T ss_dssp SCCEEECCCSSH--HHHHH--HHHHHHH
T ss_pred CcCEEeccCCCC--ChHHH--HHHHHHh
Confidence 799999999985 66553 5554443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=163.51 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=116.6
Q ss_pred HHHHHHhhhc--CCCcEEEeccC-CCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 363 IAASLGKFFG--TSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 363 ~~~~L~~~l~--~~L~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
..+.+...+. ++|++|+|++| .|+++|++.|+++|..|.+|++|+|++|.|+++|+..|+++|+.|++|++|+|+.|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3345556555 88999999986 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHHHHHHHHHcCCCeEE
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVSMLSEFRHNGLPILI 492 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~~l~~~~~~~~~i~~ 492 (507)
.|+++|+..|+++|+.|. +|+.|+|++|.. .+++.++..++++.+.++.+.-
T Consensus 109 ~Ig~~Ga~ala~aL~~N~-tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~ 161 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQ-SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 161 (197)
T ss_dssp BCCHHHHHHHHHHTTTTC-CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCE
T ss_pred cCCHHHHHHHHHHHhhCC-ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCe
Confidence 999999999999999985 599999987644 4799999999999999988853
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-20 Score=190.45 Aligned_cols=180 Identities=14% Similarity=0.065 Sum_probs=112.9
Q ss_pred hhhhhhhhhhhhhhhccCCcccccchhhhhccchhhccccc--ccccccccceecccC--ceeEEEEeccCcchh--hhh
Q 010572 118 GCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHL--ACDYSKLSYHCQQFG--HYARCLRLQNALCVE--ETC 191 (507)
Q Consensus 118 ~cl~E~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~--~~~l~~l~~~c~~~~--~~v~~L~L~~~l~~~--~~~ 191 (507)
.|.. +|++++.+|+.++.+ |. .+..|.. ..+||. | -+|.|...+ ++|+.|+|....-.+ .+.
T Consensus 2 ~c~~--~~~~aL~~~k~~~~~---~~-~l~~W~~-~~~~C~~~w-----~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~ 69 (313)
T 1ogq_A 2 LCNP--QDKQALLQIKKDLGN---PT-TLSSWLP-TTDCCNRTW-----LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69 (313)
T ss_dssp CSCH--HHHHHHHHHHHHTTC---CG-GGTTCCT-TSCTTTTCS-----TTEEECCSSSCCCEEEEEEECCCCSSCEECC
T ss_pred CCCH--HHHHHHHHHHHhcCC---cc-cccCCCC-CCCCCcCCC-----cceEeCCCCCCceEEEEECCCCCccCCcccC
Confidence 3666 799999999999976 65 6888953 457888 9 388998654 689999998633222 232
Q ss_pred -hhhccCCcCeeeccc-ccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccccc
Q 010572 192 -QLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF 269 (507)
Q Consensus 192 -~ll~~~~L~~L~Ls~-~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~ 269 (507)
.+....+|++|++++ +..... .+.-+.++++|++|+|++|.+++..+..+ .. ...++.|+++.+.+
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~----l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQ----IKTLVTLDFSYNAL 137 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEECCGGG----GG----CTTCCEEECCSSEE
T ss_pred hhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCcCCHHH----hC----CCCCCEEeCCCCcc
Confidence 345567889999883 432211 12223567889999999988865433322 10 12466666666554
Q ss_pred ccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCC-CccEEECcCCCCCCcc
Q 010572 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNSIGGWL 334 (507)
Q Consensus 270 le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~-~L~~LdLS~N~L~~~l 334 (507)
... +...+..+++|++|+|++|.+.+.....+ .... .|++|+|++|.|++.+
T Consensus 138 ~~~--------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 138 SGT--------LPPSISSLPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ESC--------CCGGGGGCTTCCEEECCSSCCEEECCGGG-----GCCCTTCCEEECCSSEEEEEC
T ss_pred CCc--------CChHHhcCCCCCeEECcCCcccCcCCHHH-----hhhhhcCcEEECcCCeeeccC
Confidence 321 12335667777777777777765443322 2223 7777777777776533
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-19 Score=205.18 Aligned_cols=297 Identities=19% Similarity=0.158 Sum_probs=147.6
Q ss_pred hhhhhhhhhccCCcccccchhhhhccchhhcccccccccccccceecccCceeEEEEeccCcchhh---hh-hhhccCCc
Q 010572 124 AELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEE---TC-QLLRESKL 199 (507)
Q Consensus 124 ~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~---~~-~ll~~~~L 199 (507)
.|++++.+||+++.| |. .+.+|. ...+||.| -||.|. +++|+.|+|.+.--.+. +. ++....+|
T Consensus 12 ~~~~all~~k~~~~~---~~-~l~~W~-~~~~~C~w-----~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 12 REIHQLISFKDVLPD---KN-LLPDWS-SNKNPCTF-----DGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp HHHHHHHHHHTTCSC---TT-SSTTCC-TTSCGGGS-----TTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred HHHHHHHHHHhhCCC---cc-cccCCC-CCCCCcCC-----cceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 789999999999986 76 889995 45689999 489998 67899999986332232 22 23333444
Q ss_pred CeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHH--HHHHHhccCCcccccccceeccccccccCCCC--
Q 010572 200 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE--GICRSLCSKRKRIHKIENLSIDISSFIENCPS-- 275 (507)
Q Consensus 200 ~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~--~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~-- 275 (507)
+.++++.+.... .+..++++++|++|+|++|.+++..+. .+. . ...++.|+++.+.+......
T Consensus 80 ~~l~~~~~~~~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~-------l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 80 ESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG-S-------CSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp CEEECTTSCEEE-----CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG-G-------CTTCCEEECCSSEEECCSSCCS
T ss_pred cccCCcCCCcCC-----CchhhccCCCCCEEECCCCcCCCcCCChHHHh-C-------CCCCCEEECcCCccCCcCCHHH
Confidence 444443331110 001124456666666666666544332 210 0 12344444444432210000
Q ss_pred ---------------c---chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCccccc
Q 010572 276 ---------------S---VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (507)
Q Consensus 276 ---------------~---l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~ 337 (507)
. ........+..+++|++|+|++|.+.+.... ...++|++|+|++|.+++.++
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~-- 217 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-------SRCVNLEFLDVSSNNFSTGIP-- 217 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-------TTCTTCCEEECCSSCCCSCCC--
T ss_pred hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-------ccCCcCCEEECcCCcCCCCCc--
Confidence 0 0011111233444444444444444332110 123455555555555543222
Q ss_pred ccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHH------------------HHHHhh
Q 010572 338 DRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFR------------------VLQDGV 397 (507)
Q Consensus 338 ~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~------------------~L~~aL 397 (507)
.++..++|++|.+.++. +.+.++..+. ++|++|+|++|.+...... .+...+
T Consensus 218 -------~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 218 -------FLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp -------BCTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCS
T ss_pred -------ccccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHH
Confidence 23334444554444443 1112223333 5566666666655321000 011111
Q ss_pred cCC-CCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 398 TKE-LKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 398 ~~n-~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... .+|++|+|++|.++...+.. +...++|++|++++|.+...-.. .++.. ..+|++|+|++|.+
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~ip~---~~l~~-l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPM---DTLLK-MRGLKVLDLSFNEF 355 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGG----GGGCTTCCEEECCSSEEEEECCH---HHHTT-CTTCCEEECCSSEE
T ss_pred HhhcCcCCEEECcCCcCCCccchH----HhcCCCccEEECCCCcccCcCCH---HHHhc-CCCCCEEeCcCCcc
Confidence 122 45777777777665433322 23346788888888877522111 12333 35789999998886
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-17 Score=180.19 Aligned_cols=82 Identities=9% Similarity=-0.078 Sum_probs=51.5
Q ss_pred hhhhhhhhhhccCCccccc-----chhhhhccchhhcccccccccccccceecccCceeEEEEeccCcchhhhh-hhhcc
Q 010572 123 AAELVVLPSFRGLISDINI-----SDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETC-QLLRE 196 (507)
Q Consensus 123 ~~e~~~~~~~~~~l~di~~-----~~~~l~~~~~~~~~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~~~-~ll~~ 196 (507)
.+|++++..++..+..-.- +......|+ ...++|.|..- -||.|... ++|+.|+|.+.--.+.+. ++...
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-~~~~~c~w~~~--~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-FNKELDMWGAQ--PGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC-CSSCGGGTTCC--TTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-CCCCcccccCC--CCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 4677788888776654110 011233575 34688999322 28899755 689999998643333343 55667
Q ss_pred CCcCeeeccccc
Q 010572 197 SKLQSLVLRWIR 208 (507)
Q Consensus 197 ~~L~~L~Ls~~~ 208 (507)
.+|++|+|+++.
T Consensus 105 ~~L~~L~Ls~N~ 116 (636)
T 4eco_A 105 TELEVLALGSHG 116 (636)
T ss_dssp TTCCEEESCCGG
T ss_pred ccceEEECcCCc
Confidence 889999998873
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=182.89 Aligned_cols=312 Identities=13% Similarity=0.062 Sum_probs=170.6
Q ss_pred hhhhhhhhhhccCCcccccchhhhhccchhh----ccc--cccccccc-------ccceecccCceeEEEEeccCcchhh
Q 010572 123 AAELVVLPSFRGLISDINISDTILNYIGYEQ----QMN--HLACDYSK-------LSYHCQQFGHYARCLRLQNALCVEE 189 (507)
Q Consensus 123 ~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~----~~~--c~~~~l~~-------l~~~c~~~~~~v~~L~L~~~l~~~~ 189 (507)
..|++++..|+.++.+ | +|.... .++ |.|.-.+. -||.|.. .++|..|+|.+.--.+.
T Consensus 268 ~~d~~ALl~~k~~l~~---~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 268 IKDYKALKAIWEALDG---K-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHTTG---G-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred hHHHHHHHHHHHHcCC---C-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 4689999999998876 5 674432 233 89810011 3788876 46799999986433334
Q ss_pred hh-hhhccCCcCeeec-ccccChhh------------------------------------HHHH---------------
Q 010572 190 TC-QLLRESKLQSLVL-RWIRFEEH------------------------------------VQAL--------------- 216 (507)
Q Consensus 190 ~~-~ll~~~~L~~L~L-s~~~~~~~------------------------------------~~~l--------------- 216 (507)
+. ++.....|++|+| ++|...+. +..+
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 43 5566788999999 65521111 0000
Q ss_pred ---------------------HHHHhhCCCCccEEEeecCCCChh-----------------HHHHHHHHhccCCccccc
Q 010572 217 ---------------------CKLLIQNSETLASLEFLHCKLSPS-----------------FVEGICRSLCSKRKRIHK 258 (507)
Q Consensus 217 ---------------------~~~L~~~~~~L~~LdLs~~~ls~~-----------------~~~~L~~~L~~~~~~~~~ 258 (507)
++.-++++++|++|+|++|.|+++ .+..+ ... ....
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~--~L~~ 492 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL----SWS--NLKD 492 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC----CGG--GCTT
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh----hhc--cCCC
Confidence 122345678999999999999983 22211 000 1234
Q ss_pred ccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCc-hHHHHHHHH--hccCCCCccEEECcCCCCCCcc
Q 010572 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDR-DFGRMVFSS--LLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 259 l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~-~g~~~L~~~--L~~~~~~L~~LdLS~N~L~~~l 334 (507)
++.|+++.|.+.. . +...+..+++|++|+|++|+ +.+ ..+..+... -....++|+.|+|++|.|+ .+
T Consensus 493 L~~L~Ls~N~l~~----~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 493 LTDVELYNCPNMT----Q----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp CCEEEEESCTTCC----S----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred CCEEECcCCCCCc----c----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 7777777665432 1 22446777888888888887 776 444333211 1123467888888888877 22
Q ss_pred cc---cc-cCC----------chh--hcccCCCcCccccccchhHHHHHHhhhc--CC-CcEEEeccCCCCchhHHHHHH
Q 010572 335 SK---YD-RSG----------PLF--SLGAGKSLQSLRLLNLSHIAASLGKFFG--TS-VQVLNIGAIGLGSSGFRVLQD 395 (507)
Q Consensus 335 ~~---~~-~~~----------l~~--~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~-L~~L~Ls~n~l~~~G~~~L~~ 395 (507)
+. +. ... +.. .++..++|+.|.+.+|. +. .++..+. .. |++|+|++|.|+.. ..
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~-l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-----p~ 636 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-IE-EIPEDFCAFTDQVEGLGFSHNKLKYI-----PN 636 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC-CS-CCCTTSCEECTTCCEEECCSSCCCSC-----CS
T ss_pred CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc-cc-cchHHHhhccccCCEEECcCCCCCcC-----ch
Confidence 21 00 000 000 22333334444444433 11 3333333 44 77777777776631 12
Q ss_pred hhcC--CCCCCEEeccCCCCChHHHHHHHhhC-CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 396 GVTK--ELKLVNINISKNRGGVETAKFLSKLM-PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 396 aL~~--n~~L~~LdLs~N~i~~~g~~~L~~~L-~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+.. ...|++|+|++|.++...+.+.+..- ...++|+.|+|++|.|+.-. ..+-....+|+.|+|++|.+
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-----~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP-----TELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-----HHHHHTTCCCSEEECCSCCC
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC-----HHHHccCCCCCEEECCCCcC
Confidence 2222 22377777777777653221110000 02236788888888877321 11111235688888888876
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=151.98 Aligned_cols=226 Identities=18% Similarity=0.195 Sum_probs=145.3
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.+++....-.+.........+|++|+++++..... + .+..+..+++|++|+|++|.+++..+..+..
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~--~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~------- 140 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS--T-LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------- 140 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH--H-HHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-------
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH--H-HHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-------
Confidence 46667765422111112233456788888887743221 1 2233456788888888888888776665422
Q ss_pred ccccccceeccccccccCCCCcchH-HHHHHHhCCCCCCEEEccCC-CCCchHHHHHHHHhccCCC-CccEEECcCC--C
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVV-ELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASS-SLSILDLSGN--S 329 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~-~L~~~L~~~~sL~~L~LS~N-~L~~~g~~~L~~~L~~~~~-~L~~LdLS~N--~ 329 (507)
...++.|+++.+.. ++. .+...+..+++|++|+|++| .+++.+...... ..+ +|++|+|++| .
T Consensus 141 -~~~L~~L~L~~~~~-------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 141 -NSNLVRLNLSGCSG-------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKN 208 (336)
T ss_dssp -CTTCSEEECTTCBS-------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----HSCTTCCEEECCSCGGG
T ss_pred -CCCCCEEECCCCCC-------CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----hcccCCCEEEeCCCccc
Confidence 13467777665521 122 35556677788888888888 887776544332 236 7888888887 3
Q ss_pred CCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEE
Q 010572 330 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNI 406 (507)
Q Consensus 330 L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~L 406 (507)
+++ ..+...+. ++|++|+|++|. +++.+...+ ....+|++|
T Consensus 209 ~~~--------------------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L 252 (336)
T 2ast_B 209 LQK--------------------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF----FQLNYLQHL 252 (336)
T ss_dssp SCH--------------------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG----GGCTTCCEE
T ss_pred CCH--------------------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH----hCCCCCCEe
Confidence 432 11112222 689999999999 777766544 445889999
Q ss_pred eccCC-CCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 407 NISKN-RGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 407 dLs~N-~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|++| .+++.+...+ ...++|+.|++++| ++++++..+++. ++.|++++|.+
T Consensus 253 ~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l 305 (336)
T 2ast_B 253 SLSRCYDIIPETLLEL----GEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHF 305 (336)
T ss_dssp ECTTCTTCCGGGGGGG----GGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCS
T ss_pred eCCCCCCCCHHHHHHH----hcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccC
Confidence 99999 5777665444 34688999999999 999888877643 45566888887
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=160.43 Aligned_cols=181 Identities=20% Similarity=0.167 Sum_probs=117.6
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccC----------------------------------CCCccEEECcCCCC
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA----------------------------------SSSLSILDLSGNSI 330 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~----------------------------------~~~L~~LdLS~N~L 330 (507)
+..+++|++|+|++|++++..+..++..+... .++|++|+|++|.+
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 44568899999999999999888776653210 13455555555555
Q ss_pred CCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec
Q 010572 331 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 408 (507)
Q Consensus 331 ~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL 408 (507)
++..+. .++..++|+.|.+.++. +.+..+..+. ..|++|+|++|.++.... ..+....+|++|+|
T Consensus 288 ~~~~~~--------~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L 354 (455)
T 3v47_A 288 FALLKS--------VFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDS----RMFENLDKLEVLDL 354 (455)
T ss_dssp CEECTT--------TTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECG----GGGTTCTTCCEEEC
T ss_pred cccchh--------hcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcCh----hHhcCcccCCEEEC
Confidence 432221 45556667777666654 1111122333 789999999999976532 33455678999999
Q ss_pred cCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 409 SKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 409 s~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
++|.++..++. .+...++|++|+|++|.|+..... ++.. ..+|+.|+|++|++.-.......+....+..
T Consensus 355 s~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~----~~~~-l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 424 (455)
T 3v47_A 355 SYNHIRALGDQ----SFLGLPNLKELALDTNQLKSVPDG----IFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424 (455)
T ss_dssp CSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTT----TTTT-CTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred CCCcccccChh----hccccccccEEECCCCccccCCHh----Hhcc-CCcccEEEccCCCcccCCCcchHHHHHHHhC
Confidence 99999876543 344568899999999999863321 2332 3689999999999843333345555554433
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=157.68 Aligned_cols=222 Identities=13% Similarity=0.036 Sum_probs=152.2
Q ss_pred hhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEcc---
Q 010572 221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLR--- 297 (507)
Q Consensus 221 ~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS--- 297 (507)
...+++|++|+|++|.+++..+..+...+ ..++.|.+. ..+. ..++......+++|++|+|+
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-------~~L~~L~L~-~~~~-------~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKC-------PNLEVLETR-NVIG-------DRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTC-------TTCCEEEEE-GGGH-------HHHHHHHHHHCTTCCEEEEECCC
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhC-------cCCCEEecc-CccC-------HHHHHHHHHhCCCCCEEEeecCc
Confidence 34456788888888888777765543322 246666655 2211 12344555678889999999
Q ss_pred --------CCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhccc-CCCcCcccccc----ch---
Q 010572 298 --------HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLN----LS--- 361 (507)
Q Consensus 298 --------~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~-~~~L~~L~ll~----l~--- 361 (507)
.|.+++.|...++.. .++|++|+|+.|.+++.... .+.. +++|++|++.. +.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~l~~~~~~--------~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQG----CQELEYMAVYVSDITNESLE--------SIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHH----CTTCSEEEEEESCCCHHHHH--------HHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred cccccccccCccCHHHHHHHHhh----CccCeEEEeecCCccHHHHH--------HHHhhCCCCcEEEEeecCCCccccC
Confidence 478888887766443 47899999988888853221 2332 56677777752 11
Q ss_pred ----hHHHHHHhhhcCCCcEEEeccCC--CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 362 ----HIAASLGKFFGTSVQVLNIGAIG--LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 362 ----~~~~~L~~~l~~~L~~L~Ls~n~--l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.+...+... -++|++|+|+.|. +++.+...++.. ..+|++|+|++|.+++.+...+... .++|+.|+
T Consensus 422 ~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~---~~~L~~L~ 494 (592)
T 3ogk_B 422 LPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQY---SPNVRWMLLGYVGESDEGLMEFSRG---CPNLQKLE 494 (592)
T ss_dssp CCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHS---CTTCCEEEECSCCSSHHHHHHHHTC---CTTCCEEE
T ss_pred chHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHh---CccceEeeccCCCCCHHHHHHHHhc---CcccCeee
Confidence 133333221 1789999998644 888887777653 4569999999999999887766543 47899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
+++|.|++.++..++..+ .+|+.|+|++|.+ +..+.+.+++
T Consensus 495 l~~n~l~~~~~~~~~~~l----~~L~~L~ls~n~i--t~~~~~~l~~ 535 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKL----PSLRYLWVQGYRA--SMTGQDLMQM 535 (592)
T ss_dssp EESCCCBHHHHHHHHHHC----SSCCEEEEESCBC--CTTCTTGGGG
T ss_pred ccCCCCcHHHHHHHHHhc----CccCeeECcCCcC--CHHHHHHHHH
Confidence 999999998888776544 4799999999995 6666655543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-14 Score=150.46 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=79.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
++|++|+|++ .+++.+...++.. ..+|++|+|++|.+++.++..++.. +++|+.|+|++|.+++.|+..++..
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~---~~~L~~L~L~~~~i~~~~~~~l~~~---~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTY---AKKMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHH---CTTCCEEEEESCCSSHHHHHHHHHH---CTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred CCccEEeecC-cccHHHHHHHHHh---chhccEeeccCCCCcHHHHHHHHhc---CCCcCEEECcCCCCcHHHHHHHHHh
Confidence 6799999977 8888888777763 4579999999999999999888665 4789999999999998888766544
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
+ .+|+.|+|++|.+ ++++.+.+++
T Consensus 505 l----~~L~~L~l~~~~~--~~~~~~~l~~ 528 (594)
T 2p1m_B 505 L----ETMRSLWMSSCSV--SFGACKLLGQ 528 (594)
T ss_dssp G----GGSSEEEEESSCC--BHHHHHHHHH
T ss_pred C----CCCCEEeeeCCCC--CHHHHHHHHH
Confidence 4 4799999999985 7777777643
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-15 Score=151.43 Aligned_cols=276 Identities=16% Similarity=0.138 Sum_probs=172.3
Q ss_pred eeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.++.|++.+..-.... ..+.....|++|+++++.... +.+..+.++++|++|+|++|.++.-....+ ..
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~----- 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWF-KP----- 122 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHH-TT-----
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHh-CC-----
Confidence 5778888642211101 123345678888888774321 111123456788999999888875333222 11
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
...++.|+++.+.+.+... ...+..+++|++|+|++|+ ++...... ....++|++|+|++|.+++
T Consensus 123 --l~~L~~L~L~~n~l~~l~~-------~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 123 --LSSLTFLNLLGNPYKTLGE-------TSLFSHLTKLQILRVGNMDTFTKIQRKD-----FAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp --CTTCSEEECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTT-----TTTCCEEEEEEEEETTCCE
T ss_pred --CccCCEEECCCCCCcccCc-------hhhhccCCCCcEEECCCCccccccCHHH-----ccCCCCCCEEECCCCCcCc
Confidence 1357778777766533111 0135677889999999884 65543322 1345888999999998886
Q ss_pred cccccccCCchhhcccCCCcCccccccch--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 333 ~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
..+. .+...++|++|.+.++. ........ ..++|++|+|++|.++..+...+.. ......++.++|+.
T Consensus 189 ~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 189 YEPK--------SLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRN 258 (353)
T ss_dssp ECTT--------TTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEES
T ss_pred cCHH--------HHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCcccccccccccc-ccccchhhcccccc
Confidence 4332 55566667777766665 11111111 1278999999999998765544432 23456799999999
Q ss_pred CCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCC
Q 010572 411 NRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLP 489 (507)
Q Consensus 411 N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~ 489 (507)
|.+++.+...+...+...++|++|++++|.|+.-.. .++.. ..+|++|+|++|++.-.......+....++...
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~~~-l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~ 332 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD----GIFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 332 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT----TTTTT-CTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTT
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH----HHHhc-CCCCCEEEeeCCCccCcCCCcHHHHHHHHhccc
Confidence 999999888888888888999999999999984221 11232 368999999999983333345556555555433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=140.98 Aligned_cols=207 Identities=15% Similarity=0.160 Sum_probs=144.0
Q ss_pred ceeEEEEeccCcchhh-hhh-hhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecC-CCChhHHHHHHHHhc
Q 010572 174 HYARCLRLQNALCVEE-TCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLC 250 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~-~~~-ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~-~ls~~~~~~L~~~L~ 250 (507)
.+++.|++.+..-... +.. +....+|++|+++++..... .+..+..+++|++|+|++| .+++.++..++..+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 4688899975332221 322 23356899999998854322 2222346789999999999 799887777666543
Q ss_pred cCCcccccccceecccc-ccccCCCCcchHHHHHHHhCCC-CCCEEEccCC--CCCchHHHHHHHHhccCCCCccEEECc
Q 010572 251 SKRKRIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGR-SLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLS 326 (507)
Q Consensus 251 ~~~~~~~~l~~L~l~~~-~~le~~~~~l~~~L~~~L~~~~-sL~~L~LS~N--~L~~~g~~~L~~~L~~~~~~L~~LdLS 326 (507)
.++.|+++.+ .+.+ .++...+..++ +|++|+|++| .+++.+...... ..++|++|+|+
T Consensus 169 -------~L~~L~l~~~~~l~~-------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----~~~~L~~L~l~ 230 (336)
T 2ast_B 169 -------RLDELNLSWCFDFTE-------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----RCPNLVHLDLS 230 (336)
T ss_dssp -------TCCEEECCCCTTCCH-------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH----HCTTCSEEECT
T ss_pred -------CCCEEcCCCCCCcCh-------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh----hCCCCCEEeCC
Confidence 4788888776 4321 23566788899 9999999999 678776654432 35899999999
Q ss_pred CCC-CCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccC-CCCchhHHHHHHhhcCCCCCC
Q 010572 327 GNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLV 404 (507)
Q Consensus 327 ~N~-L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~ 404 (507)
+|. +++.... .+. .. ++|++|+|++| .+++.+... +....+|+
T Consensus 231 ~~~~l~~~~~~--------~l~---------------------~l--~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~ 275 (336)
T 2ast_B 231 DSVMLKNDCFQ--------EFF---------------------QL--NYLQHLSLSRCYDIIPETLLE----LGEIPTLK 275 (336)
T ss_dssp TCTTCCGGGGG--------GGG---------------------GC--TTCCEEECTTCTTCCGGGGGG----GGGCTTCC
T ss_pred CCCcCCHHHHH--------HHh---------------------CC--CCCCEeeCCCCCCCCHHHHHH----HhcCCCCC
Confidence 999 6642211 111 11 67889999998 677776533 44577899
Q ss_pred EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 405 NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 405 ~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
+|+|++| +++++...+.+. |..|++++|.++..
T Consensus 276 ~L~l~~~-i~~~~~~~l~~~------l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 276 TLQVFGI-VPDGTLQLLKEA------LPHLQINCSHFTTI 308 (336)
T ss_dssp EEECTTS-SCTTCHHHHHHH------STTSEESCCCSCCT
T ss_pred EEeccCc-cCHHHHHHHHhh------CcceEEecccCccc
Confidence 9999999 888888877643 55567899999753
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-15 Score=151.95 Aligned_cols=230 Identities=17% Similarity=0.107 Sum_probs=147.9
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhH--HHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~--~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
..+++|+++++... .+-...+.++++|++|+|++|.++... ...+. . ...++.|+++.+.+.+
T Consensus 28 ~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~-------~~~L~~L~Ls~n~i~~--- 92 (306)
T 2z66_A 28 SSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-G-------TTSLKYLDLSFNGVIT--- 92 (306)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-S-------CSCCCEEECCSCSEEE---
T ss_pred CCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccc-c-------ccccCEEECCCCcccc---
Confidence 35777888766432 111122346678888888888877432 11111 1 1347777777665432
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
+ ...+..+++|++|+|++|.+.+..... . ....++|++|+|++|.+++..+. .+...++|+.
T Consensus 93 --l----~~~~~~l~~L~~L~l~~n~l~~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~ 154 (306)
T 2z66_A 93 --M----SSNFLGLEQLEHLDFQHSNLKQMSEFS---V-FLSLRNLIYLDISHTHTRVAFNG--------IFNGLSSLEV 154 (306)
T ss_dssp --E----EEEEETCTTCCEEECTTSEEESSTTTT---T-TTTCTTCCEEECTTSCCEECSTT--------TTTTCTTCCE
T ss_pred --C----hhhcCCCCCCCEEECCCCcccccccch---h-hhhccCCCEEECCCCcCCccchh--------hcccCcCCCE
Confidence 1 122566788999999999887654310 1 23458899999999988754332 4555666777
Q ss_pred cccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc
Q 010572 355 LRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELV 432 (507)
Q Consensus 355 L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~ 432 (507)
|.+.++.-....++..+. .+|++|+|++|.++.... ..+....+|++|+|++|.++...... +...++|+
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~ 226 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQ 226 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCSBCCSGG----GTTCTTCC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCccCccChhh----ccCcccCC
Confidence 777666411112233333 789999999999987532 33455678999999999987654322 34567899
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCC
Q 010572 433 EVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 471 (507)
Q Consensus 433 ~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~ 471 (507)
.|++++|.+...... .+.....+|+.|+|++|.+.
T Consensus 227 ~L~L~~N~l~~~~~~----~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCCBCSSS----SCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCCCcccCHH----HHHhhhccCCEEEccCCCee
Confidence 999999999865432 22222247999999999983
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=147.52 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=136.5
Q ss_pred cCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCC-CChhHHHHHHHHhccCCcccccccceeccccccccCC
Q 010572 196 ESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~ 273 (507)
...|++|+|+++.. +.....+...+. .+|++|+|++|. +++.+...+...+. .++.|+++.+.+.+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~---~~L~~L~L~~~~~~~~~~l~~~~~~~~-------~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARA---DDLETLKLDKCSGFTTDGLLSIVTHCR-------KIKTLLMEESSFSEKD 180 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHG---GGCCEEEEESCEEEEHHHHHHHHHHCT-------TCSEEECTTCEEECCC
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhcc---ccCcEEECcCCCCcCHHHHHHHHhhCC-------CCCEEECccccccCcc
Confidence 45789999987743 333333332221 249999999987 66666666655432 4788888877654322
Q ss_pred CCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCccccc-----------c-c--
Q 010572 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY-----------D-R-- 339 (507)
Q Consensus 274 ~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~-----------~-~-- 339 (507)
. ..+...+..+++|++|+|++|.+++.+...+...+ ...++|++|+|++|.+++....+ . .
T Consensus 181 ~----~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 181 G----KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp S----HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCC
T ss_pred h----hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccc
Confidence 1 22556677889999999999999733333333222 34589999999999876411000 0 0
Q ss_pred ----CCchhhcccCC-----------------------CcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhH
Q 010572 340 ----SGPLFSLGAGK-----------------------SLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGF 390 (507)
Q Consensus 340 ----~~l~~~L~~~~-----------------------~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~ 390 (507)
......+...+ +|++|.+.++.-....+...+. ++|++|+|+ +.+++.|.
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l 334 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL 334 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH
T ss_pred ccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH
Confidence 00000112222 2333333222201111111111 445555554 33444443
Q ss_pred HHHHHhhcCCCCCCEEecc-----------CCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCC
Q 010572 391 RVLQDGVTKELKLVNINIS-----------KNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGH 459 (507)
Q Consensus 391 ~~L~~aL~~n~~L~~LdLs-----------~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~ 459 (507)
..++.. ..+|++|+|+ .|.+++.+...+...+ ++|++|+++.|.+++++...++..+ .+
T Consensus 335 ~~~~~~---~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~----~~ 404 (592)
T 3ogk_B 335 EVLAQY---CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC---QELEYMAVYVSDITNESLESIGTYL----KN 404 (592)
T ss_dssp HHHHHH---CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC---TTCSEEEEEESCCCHHHHHHHHHHC----CS
T ss_pred HHHHHh---CCCCCEEEeecCccccccccccCccCHHHHHHHHhhC---ccCeEEEeecCCccHHHHHHHHhhC----CC
Confidence 333322 3457777777 4667777666655443 5677777777777777776665433 35
Q ss_pred ccEEEec
Q 010572 460 LQRLDLT 466 (507)
Q Consensus 460 L~~LdL~ 466 (507)
|+.|+|+
T Consensus 405 L~~L~l~ 411 (592)
T 3ogk_B 405 LCDFRLV 411 (592)
T ss_dssp CCEEEEE
T ss_pred CcEEEEe
Confidence 7777775
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-15 Score=156.04 Aligned_cols=192 Identities=18% Similarity=0.144 Sum_probs=115.7
Q ss_pred ceeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
.+++.|+|....-... ...+....+|++|+++++...... -+..+.++++|++|+|++|.+++..+..+ .
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~-- 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQFLQLETGAF----N-- 100 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCTTCEECTTTT----T--
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCccCccChhhc----c--
Confidence 5688899875221111 113344668999999877432111 11123567899999999998875433222 1
Q ss_pred CcccccccceeccccccccCCCCcchHHHHH--HHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~--~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L 330 (507)
....++.|+++.+.+.+ .+.. ++..+++|++|+|++|.+.+..... +....++|++|+|++|.|
T Consensus 101 --~l~~L~~L~L~~n~l~~--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 101 --GLANLEVLTLTQCNLDG--------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS----FFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp --TCTTCCEEECTTSCCBT--------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCG----GGGGCTTCCEEECTTCCB
T ss_pred --CcccCCEEeCCCCCCCc--------cccCcccccCcccCCEEECCCCccCccCccc----ccCCCCcccEEeCCCCcc
Confidence 11347777777665421 1222 3778899999999999998764432 124468999999999999
Q ss_pred CCcccccccCCchhhccc--CCCcCccccccch-------hHHHHHHhh-hc-CCCcEEEeccCCCCchhHHHHHHh
Q 010572 331 GGWLSKYDRSGPLFSLGA--GKSLQSLRLLNLS-------HIAASLGKF-FG-TSVQVLNIGAIGLGSSGFRVLQDG 396 (507)
Q Consensus 331 ~~~l~~~~~~~l~~~L~~--~~~L~~L~ll~l~-------~~~~~L~~~-l~-~~L~~L~Ls~n~l~~~G~~~L~~a 396 (507)
++..+. .+.. ...++.|.+.++. ......+.. .. ++|++|+|++|.++......+...
T Consensus 167 ~~~~~~--------~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 167 KSICEE--------DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp SCCCTT--------TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred cccChh--------hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 864332 1211 1334555554443 111111111 12 689999999999998777766654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-16 Score=155.94 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=155.9
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeec-CCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~-~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
.++++|+++++...... ..+..+.++++|++|+|++ |.+.+..+..+. . ...++.|+++.+.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~--~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~-------l~~L~~L~Ls~n~l~~---- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-K-------LTQLHYLYITHTNVSG---- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-G-------CTTCSEEEEEEECCEE----
T ss_pred ceEEEEECCCCCccCCc--ccChhHhCCCCCCeeeCCCCCcccccCChhHh-c-------CCCCCEEECcCCeeCC----
Confidence 46788998877443200 1112335678999999995 887765544331 1 2357888888776532
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCC-CcCc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK-SLQS 354 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~-~L~~ 354 (507)
.+...+..+++|++|+|++|.+.+..+..+ ...++|++|+|++|.|++.++. .+.... .|+.
T Consensus 116 ----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~~L~~ 178 (313)
T 1ogq_A 116 ----AIPDFLSQIKTLVTLDFSYNALSGTLPPSI-----SSLPNLVGITFDGNRISGAIPD--------SYGSFSKLFTS 178 (313)
T ss_dssp ----ECCGGGGGCTTCCEEECCSSEEESCCCGGG-----GGCTTCCEEECCSSCCEEECCG--------GGGCCCTTCCE
T ss_pred ----cCCHHHhCCCCCCEEeCCCCccCCcCChHH-----hcCCCCCeEECcCCcccCcCCH--------HHhhhhhcCcE
Confidence 123356789999999999999986544322 3469999999999999865543 455555 6777
Q ss_pred cccccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 355 LRLLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 355 L~ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
|.+.++. +.+.++..+. .+|++|+|++|.++.. +...+....+|++|+|++|.++..... +...++|++
T Consensus 179 L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~ 248 (313)
T 1ogq_A 179 MTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNG 248 (313)
T ss_dssp EECCSSE-EEEECCGGGGGCCCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCE
T ss_pred EECcCCe-eeccCChHHhCCcccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCE
Confidence 7777765 1112223333 4599999999998753 234456678899999999998754332 445678999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.|..... .++... .+|+.|+|++|.+
T Consensus 249 L~Ls~N~l~~~~p----~~l~~l-~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 249 LDLRNNRIYGTLP----QGLTQL-KFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSCCEECCC----GGGGGC-TTCCEEECCSSEE
T ss_pred EECcCCcccCcCC----hHHhcC-cCCCEEECcCCcc
Confidence 9999999974322 234433 5899999999998
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-15 Score=169.87 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|+.|||++|.++.. +...+.....|++|+|++|.+++..+..++. .++|++|||++|.+...... .
T Consensus 632 ~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~----L~~L~~LdLs~N~l~g~ip~----~ 699 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGY----IPKEIGSMPYLFILNLGHNDISGSIPDEVGD----LRGLNILDLSSNKLDGRIPQ----A 699 (768)
T ss_dssp BCCCEEECCSSCCBSC----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG----CTTCCEEECCSSCCEECCCG----G
T ss_pred ccccEEECcCCccccc----CCHHHhccccCCEEeCcCCccCCCCChHHhC----CCCCCEEECCCCcccCcCCh----H
Confidence 5689999999998632 3334556778999999999998776655543 47899999999999754322 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+..- ..|+.|||++|++
T Consensus 700 l~~l-~~L~~L~ls~N~l 716 (768)
T 3rgz_A 700 MSAL-TMLTEIDLSNNNL 716 (768)
T ss_dssp GGGC-CCCSEEECCSSEE
T ss_pred HhCC-CCCCEEECcCCcc
Confidence 3333 5799999999998
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-14 Score=151.61 Aligned_cols=227 Identities=17% Similarity=0.117 Sum_probs=117.7
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|++|+++++... .+....+.++++|++|+|++|.+.......+ . ....++.|.++.+.+....
T Consensus 79 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~----~l~~L~~L~l~~n~l~~~~-- 144 (477)
T 2id5_A 79 LFNLRTLGLRSNRLK----LIPLGVFTGLSNLTKLDISENKIVILLDYMF----Q----DLYNLKSLEVGDNDLVYIS-- 144 (477)
T ss_dssp CTTCCEEECCSSCCC----SCCTTSSTTCTTCCEEECTTSCCCEECTTTT----T----TCTTCCEEEECCTTCCEEC--
T ss_pred CccCCEEECCCCcCC----ccCcccccCCCCCCEEECCCCccccCChhHc----c----ccccCCEEECCCCccceeC--
Confidence 445666666655321 1111112345666666666666653321111 0 0123555555554432211
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCC-----
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK----- 350 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~----- 350 (507)
...+..+++|++|+|++|++.......+ ...++|+.|+|++|.+++.... .+....
T Consensus 145 ------~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~~~~--------~~~~l~~L~~L 205 (477)
T 2id5_A 145 ------HRAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAIRDY--------SFKRLYRLKVL 205 (477)
T ss_dssp ------TTSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEECTT--------CSCSCTTCCEE
T ss_pred ------hhhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEeChh--------hcccCccccee
Confidence 1234556777777777777766554322 3346777777777777642211 222222
Q ss_pred -------------------CcCccccccchhHHHHHH-hhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec
Q 010572 351 -------------------SLQSLRLLNLSHIAASLG-KFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 408 (507)
Q Consensus 351 -------------------~L~~L~ll~l~~~~~~L~-~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL 408 (507)
+|++|.+.++. +. .++ ..+. .+|++|+|++|.|+.... .++....+|++|+|
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L 279 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCN-LT-AVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQL 279 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSC-CC-SCCHHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEEC
T ss_pred eCCCCccccccCcccccCccccEEECcCCc-cc-ccCHHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEEC
Confidence 33344333332 00 010 1122 566677777766664332 22334556777777
Q ss_pred cCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 409 SKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 409 s~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++|.++..... .+...++|+.|+|++|.|+.-... ++. ...+|+.|+|++|++
T Consensus 280 ~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~----~~~-~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 280 VGGQLAVVEPY----AFRGLNYLRVLNVSGNQLTTLEES----VFH-SVGNLETLILDSNPL 332 (477)
T ss_dssp CSSCCSEECTT----TBTTCTTCCEEECCSSCCSCCCGG----GBS-CGGGCCEEECCSSCE
T ss_pred CCCccceECHH----HhcCcccCCEEECCCCcCceeCHh----HcC-CCcccCEEEccCCCc
Confidence 77777654332 344557788888888888753321 222 224788899999887
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-14 Score=149.08 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=60.8
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|++|+++++.... +.+..+..+++|++|+|++|.+++..+..+ . ....++.|+++.+.+.+
T Consensus 68 l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~L~~n~l~~---- 131 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF----Q----NVPLLTVLVLERNDLSS---- 131 (390)
T ss_dssp CCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTT----T----TCTTCCEEECCSSCCCC----
T ss_pred cccCcEEECCCCcccc----cChhhccCCCCcCEEECCCCCCCcCCHHHh----c----CCCCCCEEECCCCccCc----
Confidence 4567888877663221 111122456778888888887764322111 0 01236666666655432
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++. ..+..+++|++|+|++|.+....... + ...++|++|+|++|.+++
T Consensus 132 -l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 132 -LPR---GIFHNTPKLTTLSMSNNNLERIEDDT----F-QATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp -CCT---TTTTTCTTCCEEECCSSCCCBCCTTT----T-SSCTTCCEEECCSSCCSB
T ss_pred -CCH---HHhcCCCCCcEEECCCCccCccChhh----c-cCCCCCCEEECCCCcCCc
Confidence 111 12455667777777777776544321 1 334667777777777663
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-13 Score=133.34 Aligned_cols=234 Identities=18% Similarity=0.152 Sum_probs=105.3
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|++....- ..+..+....+|++|+++++....- .. +..+++|++|++++|........ +..
T Consensus 89 ~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~i~~~----~~--~~~l~~L~~L~l~~n~~~~~~~~-----~~~--- 153 (347)
T 4fmz_A 89 KLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNISDI----SP--LANLTKMYSLNLGANHNLSDLSP-----LSN--- 153 (347)
T ss_dssp TCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSCCCCC----GG--GTTCTTCCEEECTTCTTCCCCGG-----GTT---
T ss_pred cCCEEEccCCcc-cCchHHcCCCcCCEEECcCCcccCc----hh--hccCCceeEEECCCCCCcccccc-----hhh---
Confidence 466666654211 1122233445677777776633211 11 24556777777777743322111 111
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l 334 (507)
...++.|.++.+.+.+. + .+..+++|++|++++|.+.+... + ...++|+.|++++|.+++..
T Consensus 154 -l~~L~~L~l~~~~~~~~-----~-----~~~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 154 -MTGLNYLTVTESKVKDV-----T-----PIANLTDLYSLSLNYNQIEDISP------L-ASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp -CTTCCEEECCSSCCCCC-----G-----GGGGCTTCSEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCCCG
T ss_pred -CCCCcEEEecCCCcCCc-----h-----hhccCCCCCEEEccCCccccccc------c-cCCCccceeecccCCCCCCc
Confidence 12355555555443221 1 14556666666666666655432 1 23356666666666665421
Q ss_pred cccccCCchhhcccCCCcCccccccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCC
Q 010572 335 SKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRG 413 (507)
Q Consensus 335 ~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i 413 (507)
.+...++|++|.+.++. +. .+...-. ++|++|+|++|.++.. .++....+|++|++++|.+
T Consensus 216 ----------~~~~~~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 216 ----------PVANMTRLNSLKIGNNK-IT-DLSPLANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp ----------GGGGCTTCCEEECCSSC-CC-CCGGGTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCC
T ss_pred ----------hhhcCCcCCEEEccCCc-cC-CCcchhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCcc
Confidence 12233334444444332 00 0000001 4555555555555442 1233344555555555555
Q ss_pred ChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 414 GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 414 ~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++. ..+...++|+.|++++|.+.+.+...+. . ..+|+.|+|++|.+
T Consensus 278 ~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 278 SDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIG----G-LTNLTTLFLSQNHI 323 (347)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCGGGHHHHH----T-CTTCSEEECCSSSC
T ss_pred CCC------hhhcCCCCCCEEECcCCcCCCcChhHhh----c-cccCCEEEccCCcc
Confidence 442 1223334555555555555544433222 1 13455555555554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-14 Score=142.52 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=119.2
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++.... +.+..+.++++|++|+|++|.++.- ... . ...++.|.++.+.+..
T Consensus 75 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~---------~-~~~L~~L~l~~n~l~~---- 135 (330)
T 1xku_A 75 LKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKEL-PEK---------M-PKTLQELRVHENEITK---- 135 (330)
T ss_dssp CTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBC-CSS---------C-CTTCCEEECCSSCCCB----
T ss_pred CCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCcc-Chh---------h-cccccEEECCCCcccc----
Confidence 4456666666553211 1111123455666666666665421 000 0 1235555555544321
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+. ...+..+++|++|+|++|.+...+... ..+ ...++|++|+|++|.++..-. .+ ..+|++|
T Consensus 136 -~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~-~~l~~L~~L~l~~n~l~~l~~---------~~--~~~L~~L 197 (330)
T 1xku_A 136 -VR---KSVFNGLNQMIVVELGTNPLKSSGIEN--GAF-QGMKKLSYIRIADTNITTIPQ---------GL--PPSLTEL 197 (330)
T ss_dssp -BC---HHHHTTCTTCCEEECCSSCCCGGGBCT--TGG-GGCTTCCEEECCSSCCCSCCS---------SC--CTTCSEE
T ss_pred -cC---HhHhcCCccccEEECCCCcCCccCcCh--hhc-cCCCCcCEEECCCCccccCCc---------cc--cccCCEE
Confidence 11 234566677777777777776543211 122 334677777777777764211 11 1345555
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
.+.++. +....+..+. .+|++|+|++|.++..... .+....+|++|+|++|.++. +...+...++|++
T Consensus 198 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~ 267 (330)
T 1xku_A 198 HLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQV 267 (330)
T ss_dssp ECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCE
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCcc-----CChhhccCCCcCE
Confidence 555543 1111112222 6778888888877654321 23445678888888887762 2223445567888
Q ss_pred EEccCCCCChhHHHHHHHHHhc-CCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKV-AKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~-~~~~L~~LdL~~N~~ 470 (507)
|++++|.|+.-+...++..... ....|+.|++++|.+
T Consensus 268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 8888888876554333321111 124677788888876
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=139.14 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=162.6
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccc-cCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI-ENCP 274 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~l-e~~~ 274 (507)
...|++|+++++.... .. ...++.++++|++|++++| +++.++..+...+. .++.|.+..+.-. +..+
T Consensus 288 ~~~L~~L~L~~~~l~~--~~-l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~-------~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQS--YD-LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK-------DLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp HTTCCEEECTTCCCCH--HH-HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT-------TCCEEEEECSCTTCSSCS
T ss_pred hCCCCEEEccCCCCCH--HH-HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC-------CCCEEEEecCcccccccC
Confidence 3578888887765321 11 2233456788899999888 77777766655432 3666765321100 0112
Q ss_pred CcchH-HHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECc--C----CCCCCcccccccCCchhhcc
Q 010572 275 SSVVV-ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--G----NSIGGWLSKYDRSGPLFSLG 347 (507)
Q Consensus 275 ~~l~~-~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS--~----N~L~~~l~~~~~~~l~~~L~ 347 (507)
..++. ++......+++|++|+++.|.+++.++..++.. .++|++|+|+ + |.+++.... ..+...+.
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~~~l~~ 429 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDYLTLEPLD---IGFGAIVE 429 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCTTTCCCTH---HHHHHHHH
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCcceeEeecccCCCcccccCCchh---hHHHHHHh
Confidence 22333 344444568999999999999999988776543 4789999999 4 455521000 00111345
Q ss_pred cCCCcCccccccch--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 348 AGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 348 ~~~~L~~L~ll~l~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
.+++|+.|.+.+.- .+...++.. .++|++|+|++|.+++.|...++.. ..+|++|+|++|.+++.+...+...
T Consensus 430 ~~~~L~~L~L~~~l~~~~~~~l~~~-~~~L~~L~L~~~~i~~~~~~~l~~~---~~~L~~L~L~~n~~~~~~~~~~~~~- 504 (594)
T 2p1m_B 430 HCKDLRRLSLSGLLTDKVFEYIGTY-AKKMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASK- 504 (594)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHH-CTTCCEEEEESCCSSHHHHHHHHHH---CTTCCEEEEESCSCCHHHHHHTGGG-
T ss_pred hCCCccEEeecCcccHHHHHHHHHh-chhccEeeccCCCCcHHHHHHHHhc---CCCcCEEECcCCCCcHHHHHHHHHh-
Confidence 56677777775521 344444441 2789999999999999998887655 5679999999999988887765543
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCC
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~ 469 (507)
.++|+.|++++|.++++|++.++..+ ++|+...+..+.
T Consensus 505 --l~~L~~L~l~~~~~~~~~~~~l~~~l----p~l~i~~~~~~~ 542 (594)
T 2p1m_B 505 --LETMRSLWMSSCSVSFGACKLLGQKM----PKLNVEVIDERG 542 (594)
T ss_dssp --GGGSSEEEEESSCCBHHHHHHHHHHC----TTEEEEEECSSS
T ss_pred --CCCCCEEeeeCCCCCHHHHHHHHHhC----CCCEEEEecCCC
Confidence 37899999999999999999887655 356666666554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=130.92 Aligned_cols=148 Identities=20% Similarity=0.128 Sum_probs=66.7
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~ 363 (507)
+..+++|++|++++|.+.+... + ...++|++|+|++|.+++.. .+...++|+.|.+.++. ..
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~------~-~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP------I-ANLTDLYSLSLNYNQIEDIS----------PLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG------G-GGCTTCSEEECTTSCCCCCG----------GGGGCTTCCEEECCSSCCCC
T ss_pred hhhCCCCcEEEecCCCcCCchh------h-ccCCCCCEEEccCCcccccc----------cccCCCccceeecccCCCCC
Confidence 4455555555555555554433 1 22355555555555555311 12233334444433332 00
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
...+.. .++|++|+|++|.++.... +....+|++|+|++|.++.. ..+...++|+.|++++|.+++
T Consensus 214 ~~~~~~--~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 214 ITPVAN--MTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CGGGGG--CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC
T ss_pred Cchhhc--CCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCC
Confidence 000000 1455555555555554332 33344555555555555442 123344555555555555554
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.. ++... .+|+.|+|++|.+
T Consensus 280 ~~------~~~~l-~~L~~L~L~~n~l 299 (347)
T 4fmz_A 280 IS------VLNNL-SQLNSLFLNNNQL 299 (347)
T ss_dssp CG------GGGGC-TTCSEEECCSSCC
T ss_pred Ch------hhcCC-CCCCEEECcCCcC
Confidence 21 22222 3455555555553
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=136.56 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=126.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccc-cccCCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~-~le~~~~ 275 (507)
..+++|+++++.... +.+..+.++++|++|+|++|.+++.....+ .. ...++.|+++.+. +.+..
T Consensus 32 ~~l~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~----l~~L~~L~l~~n~~l~~~~-- 97 (285)
T 1ozn_A 32 AASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNVLARIDAAAF----TG----LALLEQLDLSDNAQLRSVD-- 97 (285)
T ss_dssp TTCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTT----TT----CTTCCEEECCSCTTCCCCC--
T ss_pred CCceEEEeeCCcCCc----cCHHHcccCCCCCEEECCCCccceeCHhhc----CC----ccCCCEEeCCCCCCccccC--
Confidence 467888887764321 111123456788888888887654322111 00 1235555555443 21110
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
...+..+++|++|+|++|.+....... ....++|++|+|++|.|++...
T Consensus 98 ------~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-------------------- 146 (285)
T 1ozn_A 98 ------PATFHGLGRLHTLHLDRCGLQELGPGL-----FRGLAALQYLYLQDNALQALPD-------------------- 146 (285)
T ss_dssp ------TTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------------------
T ss_pred ------HHHhcCCcCCCEEECCCCcCCEECHhH-----hhCCcCCCEEECCCCcccccCH--------------------
Confidence 123445566666666666665543321 1234566666666666653211
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
..+. .+|++|+|++|.++.... .++....+|++|+|++|.++...+. .+...++|+.
T Consensus 147 -------------~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~ 205 (285)
T 1ozn_A 147 -------------DTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMT 205 (285)
T ss_dssp -------------TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCE
T ss_pred -------------hHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCCCcccccCHh----HccCcccccE
Confidence 1111 578899999999875432 2344567899999999998876443 3445578999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
|++++|.|+..... ++.. ..+|+.|+|++|.+.-.........-++.
T Consensus 206 L~l~~n~l~~~~~~----~~~~-l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 206 LYLFANNLSALPTE----ALAP-LRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp EECCSSCCSCCCHH----HHTT-CTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred eeCCCCcCCcCCHH----Hccc-CcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 99999999865432 3333 36799999999998333333334343333
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-15 Score=151.74 Aligned_cols=274 Identities=11% Similarity=0.012 Sum_probs=146.9
Q ss_pred hhhhhhhhhccCCcccccchhhhhccc---hhhcccccccccccccceecc--------cCceeEEEEeccCcchhhhh-
Q 010572 124 AELVVLPSFRGLISDINISDTILNYIG---YEQQMNHLACDYSKLSYHCQQ--------FGHYARCLRLQNALCVEETC- 191 (507)
Q Consensus 124 ~e~~~~~~~~~~l~di~~~~~~l~~~~---~~~~~~c~~~~l~~l~~~c~~--------~~~~v~~L~L~~~l~~~~~~- 191 (507)
.|++++..|+.++.. .+.+.+..|. .....+|.| -++.|.. ...+|+.|+|...--. .+.
T Consensus 27 ~~~~aLl~~k~~~~~--~~~~~~~~w~~~~~~~~~~~~~-----~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 27 PYHDVLSQWQRHYNA--DRNRWHSAWRQANSNNPQIETR-----TGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CHHHHHHHHHHHHHH--CCTTHHHHHHHHTTTCTTSCCS-----HHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred hHHHHHHHHHHhccC--Cchhhhhhhccccccccccccc-----CCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 677788888877632 1556777884 223467777 2455532 1235777777642211 111
Q ss_pred hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccccccc
Q 010572 192 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 271 (507)
Q Consensus 192 ~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le 271 (507)
.+....+|++|+++++... .+ +..++++++|++|+|++|.++ ..+..+ .. ...++.|+++.|.+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~l----p~~~~~l~~L~~L~Ls~n~l~-~lp~~l----~~----l~~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-EL----PDTMQQFAGLETLTLARNPLR-ALPASI----AS----LNRLRELSIRACPELT 164 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CC----CSCGGGGTTCSEEEEESCCCC-CCCGGG----GG----CTTCCEEEEEEETTCC
T ss_pred hhhhCCCCCEEECCCCCcc-ch----hHHHhccCCCCEEECCCCccc-cCcHHH----hc----CcCCCEEECCCCCCcc
Confidence 2334556777777766432 11 111234567777777777665 222111 10 1235556655544322
Q ss_pred CCCCcchH-HHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCC
Q 010572 272 NCPSSVVV-ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 350 (507)
Q Consensus 272 ~~~~~l~~-~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~ 350 (507)
.-...+.. .+...+..+++|++|+|++|+++.- .. .+ ...++|++|+|++|.|++... .+...
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~----~l-~~l~~L~~L~L~~N~l~~l~~---------~l~~l- 228 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PA----SI-ANLQNLKSLKIRNSPLSALGP---------AIHHL- 228 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CG----GG-GGCTTCCEEEEESSCCCCCCG---------GGGGC-
T ss_pred ccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hH----hh-cCCCCCCEEEccCCCCCcCch---------hhccC-
Confidence 11100000 0011133466667777777666521 11 12 234666677777666664111 11111
Q ss_pred CcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC
Q 010572 351 SLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE 430 (507)
Q Consensus 351 ~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~ 430 (507)
++|++|+|++|.+... +...+....+|++|+|++|.+....+.. +...++
T Consensus 229 ----------------------~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~ 278 (328)
T 4fcg_A 229 ----------------------PKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQ 278 (328)
T ss_dssp ----------------------TTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCBCCTT----GGGCTT
T ss_pred ----------------------CCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhhcchh----hhcCCC
Confidence 5688888888877542 2233445677999999998876554433 334578
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 431 LVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 431 L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+.|+|++|.+...-.. .+.. -.+|+.+++..|.+
T Consensus 279 L~~L~L~~n~~~~~iP~----~l~~-L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPS----LIAQ-LPANCIILVPPHLQ 313 (328)
T ss_dssp CCEEECTTCTTCCCCCG----GGGG-SCTTCEEECCGGGS
T ss_pred CCEEeCCCCCchhhccH----HHhh-ccCceEEeCCHHHH
Confidence 99999999887543222 2333 25689999888775
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-14 Score=144.60 Aligned_cols=235 Identities=15% Similarity=0.050 Sum_probs=158.0
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..+++|+++++.... +....+.++++|++|+|++|.+++.....+ . ....++.|+++.+.+.+
T Consensus 52 ~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~Ls~n~l~~----- 114 (353)
T 2z80_A 52 EAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEEDSF----S----SLGSLEHLDLSYNYLSN----- 114 (353)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTT----T----TCTTCCEEECCSSCCSS-----
T ss_pred ccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCccCHhhc----C----CCCCCCEEECCCCcCCc-----
Confidence 378999998874321 111123567899999999999875332211 1 12357888888776532
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC-CCCcccccccCCchhhcccCCCcCcc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~-L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
++ ..++..+++|++|+|++|++...... ......++|++|+|++|. ++..... .+...++|++|
T Consensus 115 ~~---~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~--------~~~~l~~L~~L 179 (353)
T 2z80_A 115 LS---SSWFKPLSSLTFLNLLGNPYKTLGET----SLFSHLTKLQILRVGNMDTFTKIQRK--------DFAGLTFLEEL 179 (353)
T ss_dssp CC---HHHHTTCTTCSEEECTTCCCSSSCSS----CSCTTCTTCCEEEEEESSSCCEECTT--------TTTTCCEEEEE
T ss_pred CC---HhHhCCCccCCEEECCCCCCcccCch----hhhccCCCCcEEECCCCccccccCHH--------HccCCCCCCEE
Confidence 22 23568889999999999999854320 112456899999999995 5542221 45555666666
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
.+.++. ..+..+..+. .+|++|+|++|.++...... .....+|++|+|++|.++......+... ...+.++.
T Consensus 180 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~~~~l~~ 253 (353)
T 2z80_A 180 EIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIF----VDVTSSVECLELRDTDLDTFHFSELSTG-ETNSLIKK 253 (353)
T ss_dssp EEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHH----HHHTTTEEEEEEESCBCTTCCCC-------CCCCCCE
T ss_pred ECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhh----hhhcccccEEECCCCccccccccccccc-cccchhhc
Confidence 665554 1111223333 78999999999997654222 2235689999999999887544433322 23457999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++|+.|.+++.+...+.+.+... .+|+.|+|++|.+
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~l 289 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQL 289 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTC-TTCCEEECCSSCC
T ss_pred cccccccccCcchhhhHHHHhcc-cCCCEEECCCCCC
Confidence 99999999999999998888765 6899999999998
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=139.83 Aligned_cols=224 Identities=15% Similarity=0.121 Sum_probs=148.3
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..+++|+++++.... +.+..+.++++|++|+|++|.+++..+..+ . ....++.|+++.+.+.+.
T Consensus 52 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~Ls~n~l~~l---- 115 (330)
T 1xku_A 52 PDTALLDLQNNKITE----IKDGDFKNLKNLHTLILINNKISKISPGAF----A----PLVKLERLYLSKNQLKEL---- 115 (330)
T ss_dssp TTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCCCBCTTTT----T----TCTTCCEEECCSSCCSBC----
T ss_pred CCCeEEECCCCcCCE----eChhhhccCCCCCEEECCCCcCCeeCHHHh----c----CCCCCCEEECCCCcCCcc----
Confidence 467889988774321 111123567899999999998875433222 1 113578888877765432
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+.. ..++|++|++++|.+.......+ ...++|++|+|++|.++.... ....+...++|+.|.
T Consensus 116 -~~~------~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 116 -PEK------MPKTLQELRVHENEITKVRKSVF-----NGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIR 177 (330)
T ss_dssp -CSS------CCTTCCEEECCSSCCCBBCHHHH-----TTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEE
T ss_pred -Chh------hcccccEEECCCCcccccCHhHh-----cCCccccEEECCCCcCCccCc------ChhhccCCCCcCEEE
Confidence 211 12689999999999988766433 346899999999999974211 011566667777777
Q ss_pred cccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 357 LLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
+.++.- ..++..+..+|++|+|++|.++.... ..+....+|++|+|++|.++......+ ...++|++|+|
T Consensus 178 l~~n~l--~~l~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L 247 (330)
T 1xku_A 178 IADTNI--TTIPQGLPPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSISAVDNGSL----ANTPHLRELHL 247 (330)
T ss_dssp CCSSCC--CSCCSSCCTTCSEEECTTSCCCEECT----GGGTTCTTCCEEECCSSCCCEECTTTG----GGSTTCCEEEC
T ss_pred CCCCcc--ccCCccccccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCceeChhhc----cCCCCCCEEEC
Confidence 766640 11222233789999999999986543 234556789999999999887544333 34578999999
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 437 GYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 437 s~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++|.|..- ...+.. ..+|+.|+|++|.+
T Consensus 248 ~~N~l~~l-----p~~l~~-l~~L~~L~l~~N~i 275 (330)
T 1xku_A 248 NNNKLVKV-----PGGLAD-HKYIQVVYLHNNNI 275 (330)
T ss_dssp CSSCCSSC-----CTTTTT-CSSCCEEECCSSCC
T ss_pred CCCcCccC-----Chhhcc-CCCcCEEECCCCcC
Confidence 99999831 123333 36799999999987
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-15 Score=159.09 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=72.8
Q ss_pred cccCCCcCccccccchhHHHHH--Hhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHH
Q 010572 346 LGAGKSLQSLRLLNLSHIAASL--GKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFL 421 (507)
Q Consensus 346 L~~~~~L~~L~ll~l~~~~~~L--~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L 421 (507)
+...++|+.|.+.++.-....+ ...+. ++|++|+|++|.++.... .++....+|++|+|++|.++..++..+
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh----hhhccccCCCEEECCCCccCcCChhHh
Confidence 4445555555555554110001 11222 678888888888775432 234456678888888888887665444
Q ss_pred HhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 422 SKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 422 ~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
...++| .|++++|.++......+. .+ .+|+.|+|++|++.-.......+.-+..
T Consensus 521 ----~~l~~L-~L~L~~N~l~~~~~~~~~-~l----~~L~~L~l~~N~~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 521 ----SHLKGI-YLNLASNHISIILPSLLP-IL----SQQRTINLRQNPLDCTCSNIYFLEWYKE 574 (606)
T ss_dssp ----TTCCSC-EEECCSSCCCCCCGGGHH-HH----HTSSEEECTTCCEECSGGGHHHHHHHHH
T ss_pred ----Cccccc-EEECcCCcccccCHhhcc-cC----CCCCEEeCCCCCccccCCcHHHHHHHHh
Confidence 344678 888888888743322221 12 3689999999998323333333333333
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-14 Score=142.81 Aligned_cols=213 Identities=19% Similarity=0.153 Sum_probs=128.6
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
.+|++|+++++.... +.+..+.++++|++|+|++|.+++... +.. ...++.|+++.+.+.+
T Consensus 34 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~----l~~L~~L~Ls~n~l~~----- 94 (317)
T 3o53_A 34 WNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD------LES----LSTLRTLDLNNNYVQE----- 94 (317)
T ss_dssp GGCSEEECTTSCCCC----CCHHHHTTCTTCCEEECTTSCCEEEEE------ETT----CTTCCEEECCSSEEEE-----
T ss_pred CCCCEEECcCCccCc----CCHHHhhCCCcCCEEECCCCcCCcchh------hhh----cCCCCEEECcCCcccc-----
Confidence 367788887764322 122223466788888888887764321 111 1346677776665432
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+...++|++|++++|.+.+... ...++|++|+|++|.|++..+. .+...++|+.|.
T Consensus 95 --------l~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~~~~--------~~~~l~~L~~L~ 150 (317)
T 3o53_A 95 --------LLVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDL--------DEGCRSRVQYLD 150 (317)
T ss_dssp --------EEECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSGGGB--------CTGGGSSEEEEE
T ss_pred --------ccCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCccch--------hhhccCCCCEEE
Confidence 1234778888888888876543 1246788888888888753221 334445566666
Q ss_pred cccchhHHHHHHhhh--c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 357 LLNLSHIAASLGKFF--G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 357 ll~l~~~~~~L~~~l--~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
+.++. +.......+ . .+|++|+|++|.|+... ......+|++|+|++|.++.-... +...++|+.
T Consensus 151 Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~ 218 (317)
T 3o53_A 151 LKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTW 218 (317)
T ss_dssp CTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSE
T ss_pred CCCCC-CCcccHHHHhhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCcchhh-----hcccCcccE
Confidence 55554 000001111 1 67888999988887641 122356788999999988754322 233467899
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.|+. +...+.. ..+|+.|+|++|.+
T Consensus 219 L~L~~N~l~~-----l~~~~~~-l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 219 ISLRNNKLVL-----IEKALRF-SQNLEHFDLRGNGF 249 (317)
T ss_dssp EECTTSCCCE-----ECTTCCC-CTTCCEEECTTCCC
T ss_pred EECcCCcccc-----hhhHhhc-CCCCCEEEccCCCc
Confidence 9999998874 1123333 35788999999887
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-13 Score=141.97 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=73.9
Q ss_pred ceeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
..++.|+|...--.... ..+....+|++|+++++.... +.+..+.++++|++|+|++|.+++.....+ ..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~---- 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWF-GP---- 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHH-TT----
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHh-cc----
Confidence 35777777642211111 123345678888887764321 111123456788888888888776544433 11
Q ss_pred CcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
...++.|+++.+.+..... ...+..+++|++|+|++|. ++...... + ...++|++|+|++|.++
T Consensus 97 ---l~~L~~L~Ls~n~l~~~~~-------~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~-~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 97 ---LSSLKYLNLMGNPYQTLGV-------TSLFPNLTNLQTLRIGNVETFSEIRRID----F-AGLTSLNELEIKALSLR 161 (549)
T ss_dssp ---CTTCCEEECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTT----T-TTCCEEEEEEEEETTCC
T ss_pred ---CCCCcEEECCCCcccccch-------hhhhhccCCccEEECCCCccccccCHhh----h-hcccccCeeeccCCccc
Confidence 1246777777665432111 1234566777777777777 33322211 1 33577777777777777
Q ss_pred C
Q 010572 332 G 332 (507)
Q Consensus 332 ~ 332 (507)
+
T Consensus 162 ~ 162 (549)
T 2z81_A 162 N 162 (549)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=137.46 Aligned_cols=240 Identities=14% Similarity=0.071 Sum_probs=149.6
Q ss_pred ccCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCC
Q 010572 195 RESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~ 273 (507)
....++.+.+++... +..+..+...+. ..+|++|+|++|.+++..+..++. .....++.|+++.+.+....
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLA--YSRLKELTLEDLKITGTMPPLPLE------ATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHH--HSCCCEEEEESCCCBSCCCCCSSS------CCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcc--cCceeEEEeeCCEeccchhhhhhh------ccCCCCCEEEeecccccchh
Confidence 344567787776543 344444444432 256999999999988655433211 01245788888877754311
Q ss_pred CCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcC
Q 010572 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (507)
Q Consensus 274 ~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~ 353 (507)
. .++ ...+..+++|++|+|++|.+....... ....++|++|+|++|.+.+..... ....++..++|+
T Consensus 134 ~-~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~~l~~L~ 200 (310)
T 4glp_A 134 S-WLA---ELQQWLKPGLKVLSIAQAHSPAFSCEQ-----VRAFPALTSLDLSDNPGLGERGLM----AALCPHKFPAIQ 200 (310)
T ss_dssp S-SHH---HHHTTBCSCCCEEEEECCSSCCCCTTS-----CCCCTTCCEEECCSCTTCHHHHHH----TTSCTTSSCCCC
T ss_pred h-hhH---HHHhhhccCCCEEEeeCCCcchhhHHH-----hccCCCCCEEECCCCCCccchhhh----HHHhhhcCCCCC
Confidence 1 011 123457899999999999997755432 245689999999999987421100 001234556677
Q ss_pred ccccccch-hHHHHHHhhh-c--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCC
Q 010572 354 SLRLLNLS-HIAASLGKFF-G--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAP 429 (507)
Q Consensus 354 ~L~ll~l~-~~~~~L~~~l-~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~ 429 (507)
+|.+.++. .....++..+ + .+|++|+|++|.|+..+...+.. +....+|++|+|++|.++. . ...+ .+
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~~~~~L~~L~Ls~N~l~~-l----p~~~--~~ 272 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-CMWSSALNSLNLSFAGLEQ-V----PKGL--PA 272 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS-CCCCTTCCCEECCSSCCCS-C----CSCC--CS
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh-ccCcCcCCEEECCCCCCCc-h----hhhh--cC
Confidence 77777665 1112222222 2 88999999999998653111111 1112589999999999983 2 1222 26
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 430 ELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 430 ~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|++|+|++|.|..-. .+. ...+|+.|+|++|++
T Consensus 273 ~L~~L~Ls~N~l~~~~------~~~-~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 273 KLRVLDLSSNRLNRAP------QPD-ELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCEECCSCCCCSCC------CTT-SCCCCSCEECSSTTT
T ss_pred CCCEEECCCCcCCCCc------hhh-hCCCccEEECcCCCC
Confidence 8999999999998521 122 236899999999997
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-14 Score=151.33 Aligned_cols=148 Identities=20% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|.+.+... ...++|++|+|++|.|++..+. .++..++|+.|.+.+|. +.+..+
T Consensus 99 ~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~-l~~~~~ 161 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDL--------DEGCRSRVQYLDLKLNE-IDTVNF 161 (487)
T ss_dssp TTCCEEECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSGGGB--------CGGGGSSEEEEECTTSC-CCEEEG
T ss_pred CCcCEEECcCCcCCCCCc--------cccCCCCEEECCCCCCCCCCch--------hhcCCCCCCEEECCCCC-CCCcCh
Confidence 556666666666655432 1235566666666666543221 23333444444444443 000011
Q ss_pred hhh--c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 369 KFF--G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 369 ~~l--~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
..+ . ++|++|+|++|.|+... ......+|++|+|++|.++..... +...++|+.|+|++|.|..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~-- 228 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLVL-- 228 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTTSCCCE--
T ss_pred HHHhhhCCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCCCCCHh-----HcCCCCccEEEecCCcCcc--
Confidence 111 1 56777777777776531 122345677777777777653322 2233567777777777763
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+...+.. ..+|+.|+|++|.+
T Consensus 229 ---lp~~l~~-l~~L~~L~l~~N~l 249 (487)
T 3oja_A 229 ---IEKALRF-SQNLEHFDLRGNGF 249 (487)
T ss_dssp ---ECTTCCC-CTTCCEEECTTCCB
T ss_pred ---cchhhcc-CCCCCEEEcCCCCC
Confidence 1112222 24677777777775
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-14 Score=153.80 Aligned_cols=207 Identities=17% Similarity=0.125 Sum_probs=132.2
Q ss_pred CCCCccEEEeecCCCChhH--HHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC
Q 010572 223 NSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~--~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~ 300 (507)
.+++|++|++++|.+++.. ...+ .. ...++.|+++.+.+... ...+..+++|++|+|++|.
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~-~~-------~~~L~~L~L~~n~l~~~---------~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSD-LG-------TNSLRHLDLSFNGAIIM---------SANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHH-HC-------CSCCCEEECCSCSEEEE---------CCCCTTCTTCCEEECTTSE
T ss_pred cCCCCCEEECcCCccCCCcchhhhh-cc-------CCcccEeECCCCccccc---------hhhccCCCCCCeeECCCCc
Confidence 4566777777776665331 1111 11 12356666665543221 1234567788888888888
Q ss_pred CCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEE
Q 010572 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVL 378 (507)
Q Consensus 301 L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L 378 (507)
+.+..... . ....++|++|+|++|.+++..+. .+...++|+.|.+.++.-....++..+. ++|++|
T Consensus 411 l~~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 411 LKRVTEFS---A-FLSLEKLLYLDISYTNTKIDFDG--------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp EESTTTTT---T-TTTCTTCCEEECTTSCCEECCTT--------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred cCCccChh---h-hhccccCCEEECcCCCCCccchh--------hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 76654311 1 23457888888888888764432 5566677777777776511112334444 889999
Q ss_pred EeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCC
Q 010572 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKG 458 (507)
Q Consensus 379 ~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~ 458 (507)
+|++|.++.... ..+....+|++|+|++|.++...+. .+...++|+.|++++|.|+.-. ..+.....
T Consensus 479 ~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~p-----~~~~~l~~ 545 (606)
T 3vq2_A 479 DLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFNRIETSK-----GILQHFPK 545 (606)
T ss_dssp ECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTSCCCCEE-----SCGGGSCT
T ss_pred ECCCCcCCccCh----hhhcccccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCCcCcccC-----HhHhhhcc
Confidence 999999986432 3345567899999999999876543 3445578999999999998422 11333323
Q ss_pred CccEEEecCCCCC
Q 010572 459 HLQRLDLTGNNWE 471 (507)
Q Consensus 459 ~L~~LdL~~N~~~ 471 (507)
+|+.|++++|++.
T Consensus 546 ~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 546 SLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSCCCC
T ss_pred cCcEEEccCCCcc
Confidence 6999999999983
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-14 Score=150.06 Aligned_cols=251 Identities=17% Similarity=0.100 Sum_probs=154.7
Q ss_pred ceeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
..++.|+|....-... ...+....+|++|+|+++.... +.+..+.++++|++|+|++|.++.-.... +.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-- 101 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FT-- 101 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCTTS----ST--
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCccc----cc--
Confidence 3577787764221111 1133445678999998774321 11122356788999999998876422110 10
Q ss_pred CcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
....++.|+++.+.+... ....+..+++|++|+|++|.+...+... +...++|++|+|++|.|++
T Consensus 102 --~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 102 --GLSNLTKLDISENKIVIL--------LDYMFQDLYNLKSLEVGDNDLVYISHRA-----FSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp --TCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEEECCTTCCEECTTS-----STTCTTCCEEEEESCCCSS
T ss_pred --CCCCCCEEECCCCccccC--------ChhHccccccCCEEECCCCccceeChhh-----ccCCCCCCEEECCCCcCcc
Confidence 123577787777665321 1234577889999999999998765432 2346899999999999985
Q ss_pred cccccccCCchhhcccCCCcCccccccch-----------------------hHHHHHHhh-hc-CCCcEEEeccCCCCc
Q 010572 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----------------------HIAASLGKF-FG-TSVQVLNIGAIGLGS 387 (507)
Q Consensus 333 ~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-----------------------~~~~~L~~~-l~-~~L~~L~Ls~n~l~~ 387 (507)
.... .+...++|+.|.+.++. .....++.. +. .+|++|+|++|.|+.
T Consensus 167 ~~~~--------~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 167 IPTE--------ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp CCHH--------HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred cChh--------HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 3221 34444455555544432 000111111 11 478888888888876
Q ss_pred hhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecC
Q 010572 388 SGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTG 467 (507)
Q Consensus 388 ~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~ 467 (507)
.... ++....+|++|+|++|.++.... ..+...++|++|+|++|.+...... ++.. ..+|+.|+|++
T Consensus 239 ~~~~----~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~-l~~L~~L~L~~ 305 (477)
T 2id5_A 239 VPYL----AVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLAVVEPY----AFRG-LNYLRVLNVSG 305 (477)
T ss_dssp CCHH----HHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCSEECTT----TBTT-CTTCCEEECCS
T ss_pred cCHH----HhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccceECHH----HhcC-cccCCEEECCC
Confidence 5433 34456789999999999876543 2345567899999999999864322 3332 36899999999
Q ss_pred CCC
Q 010572 468 NNW 470 (507)
Q Consensus 468 N~~ 470 (507)
|.+
T Consensus 306 N~l 308 (477)
T 2id5_A 306 NQL 308 (477)
T ss_dssp SCC
T ss_pred CcC
Confidence 988
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=139.09 Aligned_cols=233 Identities=16% Similarity=0.165 Sum_probs=142.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCC-----hhHHHHHHHHhccCCcccccccceecccccccc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS-----PSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 271 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls-----~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le 271 (507)
..|++|+++++.. .-...+.. .|++|+|++|.++ +.........+.- ..++.|+++.+.+.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~-------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD-------IIKSLSLKRLTVRAARIPSRILFGALRVLGI-----SGLQELTLENLEVTG 109 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH-------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTT-----SCCCEEEEEEEBCBS
T ss_pred CCceeEeeccccc-ccHHHHHH-------HHhhcccccccccCCCcCHHHHHHHHHhcCc-----CCccEEEccCCcccc
Confidence 3567777776644 11112211 1555666666553 3322222222221 358888888877543
Q ss_pred CCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCC
Q 010572 272 NCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 351 (507)
Q Consensus 272 ~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~ 351 (507)
... ..+ ++..+++|++|+|++|.+.+. ...+........++|++|+|++|.|++..+. .++..++
T Consensus 110 ~~~----~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--------~~~~l~~ 174 (312)
T 1wwl_A 110 TAP----PPL--LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE--------QVRVFPA 174 (312)
T ss_dssp CCC----CCS--SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--------TCCCCSS
T ss_pred hhH----HHH--HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH--------HhccCCC
Confidence 211 111 136789999999999999887 3323221111238999999999999874432 5666777
Q ss_pred cCccccccch-hHHHHHHhhh--c--CCCcEEEeccCCCCchhHHHHHHh-hcCCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 352 LQSLRLLNLS-HIAASLGKFF--G--TSVQVLNIGAIGLGSSGFRVLQDG-VTKELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 352 L~~L~ll~l~-~~~~~L~~~l--~--~~L~~L~Ls~n~l~~~G~~~L~~a-L~~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
|+.|.+.+|. .+...+...+ . ++|++|+|++|.|+..+ .+... .....+|++|+|++|.+++.+.. ...
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~ 249 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAGA---PSC 249 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCCC---SCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccch---hhh
Confidence 8888887776 2222232222 3 88999999999998543 22222 23456899999999998774310 122
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...++|+.|+|++|.|+.- ...+. .+|+.|||++|.+
T Consensus 250 ~~l~~L~~L~Ls~N~l~~i-----p~~~~---~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQV-----PKGLP---AKLSVLDLSYNRL 286 (312)
T ss_dssp CCCTTCCEEECTTSCCSSC-----CSSCC---SEEEEEECCSSCC
T ss_pred hhcCCCCEEECCCCccChh-----hhhcc---CCceEEECCCCCC
Confidence 2346799999999998731 11111 4789999999987
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=148.19 Aligned_cols=264 Identities=18% Similarity=0.131 Sum_probs=172.4
Q ss_pred eeEEEEeccCcchhhhh-hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~-~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.++.|++....-. ++. .+.....|++|+++++.... +.+..+.++++|++|++++|.+........+..
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----- 348 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN----LCQISASNFPSLTHLSIKGNTKRLELGTGCLEN----- 348 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB----GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT-----
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc----CchhhhhccCcCCEEECCCCCcccccchhhhhc-----
Confidence 5888888752211 222 23345689999999885332 222234567899999999998764332211111
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
...++.|+++.+.+.+... ....+..+++|++|+|++|.+.+.....+ ...++|++|+|++|.+++.
T Consensus 349 --l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 349 --LENLRELDLSHDDIETSDC------CNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp --CTTCCEEECCSSCCCEEEE------STTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECC
T ss_pred --cCcCCEEECCCCccccccC------cchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCc
Confidence 2357788887776533210 02246778999999999999987654322 3458999999999999864
Q ss_pred ccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 334 l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
.+. ..+...++|+.|.+.++. .....+..+. ++|++|+|++|.++..... ....+....+|++|+|++|
T Consensus 416 ~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 416 DAQ-------SPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TTC-------CTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTS
T ss_pred ccc-------hhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCC
Confidence 321 135566677777776664 1112223333 7899999999999752211 1123556778999999999
Q ss_pred CCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHHHH
Q 010572 412 RGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVSML 480 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~~l 480 (507)
.++...+. .+...++|++|+|++|.+...+.. ++.. ...| .|+|++|.+ ++.++....+
T Consensus 487 ~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~-l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 487 DLSSIDQH----AFTSLKMMNHVDLSHNRLTSSSIE----ALSH-LKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp CCCEECTT----TTTTCTTCCEEECCSSCCCGGGGG----GGTT-CCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred ccCccChh----hhccccCCCEEECCCCccCcCChh----HhCc-cccc-EEECcCCcccccCHhhcccC
Confidence 99876543 344568899999999999976643 3443 3578 999999998 3444444444
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-13 Score=143.56 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=147.4
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..++.|+|+++.... +.+..+.++++|++|+|++|.++......+ .. ...++.|+++.+.+.+.
T Consensus 64 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~----~~----l~~L~~L~L~~n~l~~~---- 127 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEIGAF----NG----LANLNTLELFDNRLTTI---- 127 (440)
T ss_dssp TTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECGGGG----TT----CSSCCEEECCSSCCSSC----
T ss_pred CCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccChhhc----cC----CccCCEEECCCCcCCee----
Confidence 457888888764321 111123467889999999988875332211 11 13477788777665332
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+ ..++..+++|++|+|++|.+....... ....++|++|+|++|+..+.+.. .++....+|+.|.
T Consensus 128 -~---~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 128 -P---NGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYISE-------GAFEGLSNLRYLN 191 (440)
T ss_dssp -C---TTTSCSCSSCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECT-------TTTTTCSSCCEEE
T ss_pred -C---HhHhhccccCceeeCCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeCc-------chhhcccccCeec
Confidence 1 124567889999999999988654422 24568899999998654432211 1455566677777
Q ss_pred cccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 357 LLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
+.++. + ..++.... .+|++|+|++|.|+.... ..+....+|++|+|++|.++..... ++...++|+.|+
T Consensus 192 L~~n~-l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ 261 (440)
T 3zyj_A 192 LAMCN-L-REIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQVIERN----AFDNLQSLVEIN 261 (440)
T ss_dssp CTTSC-C-SSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTT----SSTTCTTCCEEE
T ss_pred CCCCc-C-ccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeEEChh----hhcCCCCCCEEE
Confidence 66664 0 01222112 789999999999986532 3455667899999999999876443 445568899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|++|.|...... ++. ...+|+.|+|++|.|
T Consensus 262 L~~N~l~~~~~~----~~~-~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 262 LAHNNLTLLPHD----LFT-PLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTSCCCCCCTT----TTS-SCTTCCEEECCSSCE
T ss_pred CCCCCCCccChh----Hhc-cccCCCEEEcCCCCc
Confidence 999999854322 222 236899999999998
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=145.73 Aligned_cols=228 Identities=14% Similarity=0.058 Sum_probs=148.9
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..+++|+|+++.... +.+..+.++++|++|+|++|.+++.....+ . ....++.|+++.+.+...
T Consensus 75 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~----~l~~L~~L~L~~n~l~~~---- 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAF----N----GLASLNTLELFDNWLTVI---- 138 (452)
T ss_dssp TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTT----T----TCTTCCEEECCSSCCSBC----
T ss_pred CCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhc----c----CcccCCEEECCCCcCCcc----
Confidence 467888888774321 111223567889999999998875332211 1 123577788777765332
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+ ..++..+++|++|+|++|.+....... ....++|++|+|++|+.-+.+.. ..+....+|+.|.
T Consensus 139 -~---~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 139 -P---SGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYISE-------GAFEGLFNLKYLN 202 (452)
T ss_dssp -C---TTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECT-------TTTTTCTTCCEEE
T ss_pred -C---hhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccCh-------hhccCCCCCCEEE
Confidence 1 123567889999999999998654321 24568999999998554432221 1455566677777
Q ss_pred cccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 357 LLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
+.++. +. .++.... .+|++|+|++|.|+.... ..+....+|++|+|++|.++..... .+...++|+.|+
T Consensus 203 L~~n~-l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ 272 (452)
T 3zyi_A 203 LGMCN-IK-DMPNLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLIERN----AFDGLASLVELN 272 (452)
T ss_dssp CTTSC-CS-SCCCCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEE
T ss_pred CCCCc-cc-ccccccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCCcCceECHH----HhcCCCCCCEEE
Confidence 66664 00 1111112 789999999999986532 3455667899999999999875443 344567899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCC
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 471 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~ 471 (507)
|++|.|..-... .+. +..+|+.|+|++|.|.
T Consensus 273 L~~N~l~~~~~~----~~~-~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 273 LAHNNLSSLPHD----LFT-PLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSSCCSCCCTT----SST-TCTTCCEEECCSSCEE
T ss_pred CCCCcCCccChH----Hhc-cccCCCEEEccCCCcC
Confidence 999999853321 222 2368999999999983
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-13 Score=139.48 Aligned_cols=229 Identities=15% Similarity=0.120 Sum_probs=141.2
Q ss_pred hccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCC
Q 010572 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (507)
Q Consensus 194 l~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~ 273 (507)
.....++.|+++++.... +-..++..+++|++|+|++|.+++.....+ . ....++.|+++.+.+.+.
T Consensus 42 ~~l~~l~~l~l~~~~l~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~----~l~~L~~L~L~~n~l~~~- 108 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDLQIEEIDTYAF----A----YAHTIQKLYMGFNAIRYL- 108 (390)
T ss_dssp GGGCCCSEEEEESCEESE----ECTHHHHHCCCCSEEECTTSCCCEECTTTT----T----TCTTCCEEECCSSCCCCC-
T ss_pred cccCCceEEEecCCchhh----CChhHhcccccCcEEECCCCcccccChhhc----c----CCCCcCEEECCCCCCCcC-
Confidence 345678899988764221 111223456899999999999875332221 1 123578888887765332
Q ss_pred CCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcC
Q 010572 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (507)
Q Consensus 274 ~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~ 353 (507)
+ ..++..+++|++|+|++|++...... .....++|++|+|++|.|++..+. ++...++|+
T Consensus 109 ----~---~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~ 168 (390)
T 3o6n_A 109 ----P---PHVFQNVPLLTVLVLERNDLSSLPRG-----IFHNTPKLTTLSMSNNNLERIEDD--------TFQATTSLQ 168 (390)
T ss_dssp ----C---TTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCCBCCTT--------TTSSCTTCC
T ss_pred ----C---HHHhcCCCCCCEEECCCCccCcCCHH-----HhcCCCCCcEEECCCCccCccChh--------hccCCCCCC
Confidence 1 23467889999999999999865432 224568999999999999853321 233333333
Q ss_pred ccccccch--hH-HH-----------------------------------HHHhhhcCCCcEEEeccCCCCchhHHHHHH
Q 010572 354 SLRLLNLS--HI-AA-----------------------------------SLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 395 (507)
Q Consensus 354 ~L~ll~l~--~~-~~-----------------------------------~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~ 395 (507)
.|.+.++. .. .. .++.....+|++|+|++|.+++. .
T Consensus 169 ~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~------~ 242 (390)
T 3o6n_A 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT------A 242 (390)
T ss_dssp EEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC------G
T ss_pred EEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc------H
Confidence 33333322 00 00 00000113566777777777653 2
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCC
Q 010572 396 GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 471 (507)
Q Consensus 396 aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~ 471 (507)
.+....+|++|+|++|.++...+. .+...++|++|+|++|.++.-.. .. .+..+|+.|+|++|.+.
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~-----~~-~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNRLVALNL-----YG-QPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECCSSCCCEEEC-----SS-SCCTTCCEEECCSSCCC
T ss_pred HHcCCCCccEEECCCCcCCCcChh----HccccccCCEEECCCCcCcccCc-----cc-CCCCCCCEEECCCCcce
Confidence 355567788888888888765433 33445789999999998875321 11 23368999999999873
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=140.46 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 428 APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 428 n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
.++|++|++++|.|+.-... ++.. ..+|+.|+|++|++.-.......+.....+.
T Consensus 443 l~~L~~L~L~~N~l~~l~~~----~~~~-l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 443 LEALQELNVASNQLKSVPDG----IFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp CTTCCEEECCSSCCCCCCTT----TTTT-CTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred CCCCCEEECCCCcCCccCHH----Hhcc-CCcccEEECcCCCCcccCCchHHHHHHHHhc
Confidence 45677777777777632211 2322 2568888888888732223344435555444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-13 Score=133.74 Aligned_cols=216 Identities=18% Similarity=0.083 Sum_probs=116.1
Q ss_pred cCCcCeeecccccChhhHHHHHHHHh-hCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLI-QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~-~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
...|++|+++++...... ...+. ...++|++|+|++|.+++.....-...+.. ...++.|.++.+.+....
T Consensus 90 ~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~- 161 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTM---PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL----KPGLKVLSIAQAHSPAFS- 161 (310)
T ss_dssp HSCCCEEEEESCCCBSCC---CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB----CSCCCEEEEECCSSCCCC-
T ss_pred cCceeEEEeeCCEeccch---hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh----ccCCCEEEeeCCCcchhh-
Confidence 345777777666322111 00111 345677777777777765322110011111 124666666665542211
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
...+..+++|++|+|++|++.+....... ......++|++|+|++|.|+..... ....++..++|++
T Consensus 162 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~~l~~L~~ 228 (310)
T 4glp_A 162 -------CEQVRAFPALTSLDLSDNPGLGERGLMAA-LCPHKFPAIQNLALRNTGMETPTGV-----CAALAAAGVQPHS 228 (310)
T ss_dssp -------TTSCCCCTTCCEEECCSCTTCHHHHHHTT-SCTTSSCCCCSCBCCSSCCCCHHHH-----HHHHHHHTCCCSS
T ss_pred -------HHHhccCCCCCEEECCCCCCccchhhhHH-HhhhcCCCCCEEECCCCCCCchHHH-----HHHHHhcCCCCCE
Confidence 12345667777777777776443221110 0112346677777777777631100 0001344455666
Q ss_pred cccccch--hH-HHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC
Q 010572 355 LRLLNLS--HI-AASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE 430 (507)
Q Consensus 355 L~ll~l~--~~-~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~ 430 (507)
|.+.+|. .. ...+..... ++|++|+|++|+|+.. ...+. .+|++|+|++|.|+.- ..+...++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-----p~~~~--~~L~~L~Ls~N~l~~~------~~~~~l~~ 295 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-----PKGLP--AKLRVLDLSSNRLNRA------PQPDELPE 295 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-----CSCCC--SCCSCEECCSCCCCSC------CCTTSCCC
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-----hhhhc--CCCCEEECCCCcCCCC------chhhhCCC
Confidence 6665554 00 011111111 5899999999999842 22232 6899999999999862 11344578
Q ss_pred ccEEEccCCCCChhH
Q 010572 431 LVEVNAGYNLMPLES 445 (507)
Q Consensus 431 L~~L~Ls~N~l~~~g 445 (507)
|+.|+|++|+|+++|
T Consensus 296 L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 296 VDNLTLDGNPFLVPG 310 (310)
T ss_dssp CSCEECSSTTTSCCC
T ss_pred ccEEECcCCCCCCCC
Confidence 999999999998865
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=130.42 Aligned_cols=214 Identities=16% Similarity=0.120 Sum_probs=137.5
Q ss_pred ccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
...+|++|+++++........ ..+...+++|++|+|++|.+++. +..+ ..+... ....++.|+++.+.+....
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~--~~~~L~~L~L~~N~l~~~~- 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWATR-DAWL-AELQQW--LKPGLKVLSIAQAHSLNFS- 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTT--CCTTCCEEEEESCSCCCCC-
T ss_pred CcCCccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHh--hcCCCcEEEeeCCCCccch-
Confidence 467899999988754321100 01125678999999999999876 3222 222110 0135888888887764321
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
...+..+++|++|+|++|++.+.... .........++|++|+|++|.|++...
T Consensus 166 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------- 218 (312)
T 1wwl_A 166 -------CEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALRNAGMETPSG------------------- 218 (312)
T ss_dssp -------TTTCCCCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECTTSCCCCHHH-------------------
T ss_pred -------HHHhccCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECCCCcCcchHH-------------------
Confidence 13467889999999999998664321 111112456999999999999984110
Q ss_pred cccccchhHHHHHHhhh-c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc
Q 010572 355 LRLLNLSHIAASLGKFF-G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELV 432 (507)
Q Consensus 355 L~ll~l~~~~~~L~~~l-~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~ 432 (507)
... ..+ . .+|++|+|++|.|+..+.. .......+|++|+|++|.++. . ...+. ++|+
T Consensus 219 --------~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N~l~~-i----p~~~~--~~L~ 277 (312)
T 1wwl_A 219 --------VCS---ALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGLKQ-V----PKGLP--AKLS 277 (312)
T ss_dssp --------HHH---HHHHTTCCCSEEECTTSCCCSSCCC---SCCCCCTTCCEEECTTSCCSS-C----CSSCC--SEEE
T ss_pred --------HHH---HHHhcCCCCCEEECCCCcCCcccch---hhhhhcCCCCEEECCCCccCh-h----hhhcc--CCce
Confidence 000 111 1 6899999999999764300 112224679999999999872 1 22222 5799
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 433 EVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 433 ~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.|+|++|.|++.. .+.. ..+|+.|+|++|++
T Consensus 278 ~L~Ls~N~l~~~p------~~~~-l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 278 VLDLSYNRLDRNP------SPDE-LPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECCSSCCCSCC------CTTT-SCEEEEEECTTCTT
T ss_pred EEECCCCCCCCCh------hHhh-CCCCCEEeccCCCC
Confidence 9999999998642 1222 36799999999997
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-13 Score=134.07 Aligned_cols=217 Identities=13% Similarity=0.035 Sum_probs=141.0
Q ss_pred ceeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CChhHHHHHHHHhcc
Q 010572 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCS 251 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~~~~~~L~~~L~~ 251 (507)
..++.|++....-.... ..+....+|++|+++++.... +.+..+..+++|++|+|++|. ++......+ .
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~----~- 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR----IDAAAFTGLALLEQLDLSDNAQLRSVDPATF----H- 102 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSCTTCCCCCTTTT----T-
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce----eCHhhcCCccCCCEEeCCCCCCccccCHHHh----c-
Confidence 45888888742211111 123445689999998874321 111223567899999999997 554322111 1
Q ss_pred CCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 252 ~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
....++.|.++.+.+.+.. ...+..+++|++|+|++|.+....... ....++|++|+|++|.|+
T Consensus 103 ---~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 103 ---GLGRLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDNALQALPDDT-----FRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp ---TCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCC
T ss_pred ---CCcCCCEEECCCCcCCEEC--------HhHhhCCcCCCEEECCCCcccccCHhH-----hccCCCccEEECCCCccc
Confidence 1235788888777654321 234677899999999999998765432 245689999999999998
Q ss_pred CcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 332 ~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
+.... .+... .+|++|+|++|.++.... .++....+|++|+|++|
T Consensus 167 ~~~~~--------~~~~l-----------------------~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 167 SVPER--------AFRGL-----------------------HSLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp EECTT--------TTTTC-----------------------TTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS
T ss_pred ccCHH--------HhcCc-----------------------cccCEEECCCCcccccCH----hHccCcccccEeeCCCC
Confidence 52211 11111 568899999999986542 33455678999999999
Q ss_pred CCChHHHHHHHhhCCCCCCccEEEccCCCCCh-hHHHHHHHHHh
Q 010572 412 RGGVETAKFLSKLMPLAPELVEVNAGYNLMPL-ESLTIICSALK 454 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~-~g~~~L~~aL~ 454 (507)
.++......+. ..++|+.|++++|++.. -....+.+-++
T Consensus 212 ~l~~~~~~~~~----~l~~L~~L~l~~N~~~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 212 NLSALPTEALA----PLRALQYLRLNDNPWVCDCRARPLWAWLQ 251 (285)
T ss_dssp CCSCCCHHHHT----TCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred cCCcCCHHHcc----cCcccCEEeccCCCccCCCCcHHHHHHHH
Confidence 99876655443 45789999999999963 23333334444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-13 Score=152.39 Aligned_cols=141 Identities=22% Similarity=0.168 Sum_probs=70.6
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch---
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--- 361 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--- 361 (507)
+..+++|++|+|++|.+.+.....+. .. ..++|++|+|++|.+++..+. .+....+|+.|.+.++.
T Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~~-~~~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 141 QVQLENLQELLLSNNKIQALKSEELD--IF-ANSSLKKLELSSNQIKEFSPG--------CFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp SSCCTTCCEEECCSSCCCCBCHHHHG--GG-TTCEESEEECTTCCCCCBCTT--------GGGGSSEECEEECTTCCCHH
T ss_pred hcccccCCEEEccCCcccccCHHHhh--cc-ccccccEEECCCCcccccChh--------hhhhhhhhhhhhccccccCh
Confidence 45567777777777777665544321 11 236777777777777653321 33344445554444433
Q ss_pred hHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC
Q 010572 362 HIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL 440 (507)
Q Consensus 362 ~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~ 440 (507)
.....++..+. +.|++|+|++|.++..+...+... ...+|++|+|++|.++...... +...++|++|++++|.
T Consensus 210 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL--KWTNLTMLDLSYNNLNVVGNDS----FAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG--GGSCCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSCC
T ss_pred hhHHHHHHHhhhccccEEEccCCcccccChhHhhcc--CcCCCCEEECCCCCcCccCccc----ccCcccccEeeCCCCc
Confidence 22233333333 566666666666654332222110 1123666666666655433222 2233455555555555
Q ss_pred CC
Q 010572 441 MP 442 (507)
Q Consensus 441 l~ 442 (507)
+.
T Consensus 284 l~ 285 (680)
T 1ziw_A 284 IQ 285 (680)
T ss_dssp BS
T ss_pred cC
Confidence 54
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-13 Score=149.59 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=76.1
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++... ++.+..+.++++|++|+|++|.+++.....+ . ....++.|+++.+.+..
T Consensus 74 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~-------~l~~L~~L~L~~n~l~~---- 137 (597)
T 3oja_B 74 FRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-Q-------NVPLLTVLVLERNDLSS---- 137 (597)
T ss_dssp CCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTT-T-------TCTTCCEEECCSSCCCC----
T ss_pred CCCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHHH-c-------CCCCCCEEEeeCCCCCC----
Confidence 567899999877432 1222223567899999999998876332211 0 12347788888776542
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++. ..+..+++|++|+|++|.+.......+ ...++|++|+|++|.|++
T Consensus 138 -l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 138 -LPR---GIFHNTPKLTTLSMSNNNLERIEDDTF-----QATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp -CCT---TTTTTCTTCCEEECCSSCCCBCCTTTT-----TTCTTCCEEECTTSCCSB
T ss_pred -CCH---HHhccCCCCCEEEeeCCcCCCCChhhh-----hcCCcCcEEECcCCCCCC
Confidence 221 235778999999999999987655322 446899999999999985
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-13 Score=148.93 Aligned_cols=249 Identities=18% Similarity=0.074 Sum_probs=118.8
Q ss_pred eeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
+++.|+|....-.... ..+.....|++|+|+++... ++.+..++++++|++|+|++|.++.-.. .++.
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~------ 144 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFH------ 144 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTT------
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC----CCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhc------
Confidence 4666776532111111 12333557788888766322 1222233566778888888887763111 1000
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
....++.|+++.+.+.... ...+..+++|++|+|++|.+.+.... ..++|+.|++++|.+++.
T Consensus 145 -~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~--------~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 145 -NTPKLTTLSMSNNNLERIE--------DDTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp -TCTTCCEEECCSSCCCBCC--------TTTTTTCTTCCEEECTTSCCSBCCGG--------GCTTCSEEECCSSCCSEE
T ss_pred -cCCCCCEEEeeCCcCCCCC--------hhhhhcCCcCcEEECcCCCCCCcChh--------hhhhhhhhhcccCccccc
Confidence 1134666666666543211 12345667777777777777664321 124444444444444421
Q ss_pred c-------------------ccc---------ccCCch--hhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEec
Q 010572 334 L-------------------SKY---------DRSGPL--FSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIG 381 (507)
Q Consensus 334 l-------------------~~~---------~~~~l~--~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls 381 (507)
. ..+ +...+. ..+...++|+.|.+.+|. +.+..+..+. ++|++|+|+
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECC
Confidence 0 000 000000 023333444444444443 1111122222 556666666
Q ss_pred cCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCcc
Q 010572 382 AIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQ 461 (507)
Q Consensus 382 ~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~ 461 (507)
+|.++... .......+|++|+|++|.++.- +..+.. .++|+.|+|++|.|.... +. ...+|+
T Consensus 287 ~N~l~~l~-----~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~----l~~L~~L~L~~N~l~~~~-------~~-~~~~L~ 348 (597)
T 3oja_B 287 NNRLVALN-----LYGQPIPTLKVLDLSHNHLLHV-ERNQPQ----FDRLENLYLDHNSIVTLK-------LS-THHTLK 348 (597)
T ss_dssp TSCCCEEE-----CSSSCCTTCCEEECCSSCCCCC-GGGHHH----HTTCSEEECCSSCCCCCC-------CC-TTCCCS
T ss_pred CCCCCCCC-----cccccCCCCcEEECCCCCCCcc-Cccccc----CCCCCEEECCCCCCCCcC-------hh-hcCCCC
Confidence 66665421 1112244567777777766531 112222 256777777777775432 22 124688
Q ss_pred EEEecCCCC
Q 010572 462 RLDLTGNNW 470 (507)
Q Consensus 462 ~LdL~~N~~ 470 (507)
.|+|++|+|
T Consensus 349 ~L~l~~N~~ 357 (597)
T 3oja_B 349 NLTLSHNDW 357 (597)
T ss_dssp EEECCSSCE
T ss_pred EEEeeCCCC
Confidence 888888876
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=139.62 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=145.3
Q ss_pred CCcCeeecccccC---hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccC-
Q 010572 197 SKLQSLVLRWIRF---EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN- 272 (507)
Q Consensus 197 ~~L~~L~Ls~~~~---~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~- 272 (507)
..|+.|+++++.. ...+.+..+.+ ..+++|++|+++++.+++..+..+...+..+ .++.|+++.+.+.+.
T Consensus 190 ~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-----~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 190 ANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHT-----TVWYFSISNVKLQGQL 263 (520)
T ss_dssp SEEEECCEEECCSTTTTHHHHHHHHGG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS-----SCSEEEEEEEEEESCC
T ss_pred cceeeccccccccccccceeecchhhh-ccccchhhccccccccCHHHHHHHHHHhhhC-----cccEEEeecccccCcc
Confidence 3456666665531 11233334433 4567888888888888877776665543321 345555444433210
Q ss_pred ----------------------CCCcch-HHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC
Q 010572 273 ----------------------CPSSVV-VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (507)
Q Consensus 273 ----------------------~~~~l~-~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~ 329 (507)
+...++ ..+.. +...++|++|++++|++.+... ....++|++|+|++|.
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~-~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE-IFSNMNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNL 335 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHH-HHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSC
T ss_pred ccchhhcccccCceeEeccccccceecchhhhhc-ccccCceeEEEcCCCccccccc-------hhhCCcccEEEeECCc
Confidence 000122 22222 2234578888888888765431 1345889999999999
Q ss_pred CCCcccccccCCchhhcccCCCcCccccccch-hHHHHHHhhhc--CCCcEEEeccCCCCc-hhHHHHHHhhcCCCCCCE
Q 010572 330 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG--TSVQVLNIGAIGLGS-SGFRVLQDGVTKELKLVN 405 (507)
Q Consensus 330 L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~--~~L~~L~Ls~n~l~~-~G~~~L~~aL~~n~~L~~ 405 (507)
+++..+. .+...++|+.|.+.++. .....++..+. ++|++|+|++|.++. ... ..+....+|++
T Consensus 336 l~~~~~~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~----~~~~~l~~L~~ 403 (520)
T 2z7x_B 336 LTDTVFE--------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK----GDCSWTKSLLS 403 (520)
T ss_dssp CCTTTTT--------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG----CSCCCCTTCCE
T ss_pred cChhhhh--------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc----chhccCccCCE
Confidence 9874442 45666777777777765 23334445454 889999999999976 221 12334568999
Q ss_pred EeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 406 INISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 406 LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.+++..... +. ++|+.|++++|.|+. +...+. ...+|+.|+|++|.+
T Consensus 404 L~Ls~N~l~~~~~~~----l~--~~L~~L~Ls~N~l~~-----ip~~~~-~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 404 LNMSSNILTDTIFRC----LP--PRIKVLDLHSNKIKS-----IPKQVV-KLEALQELNVASNQL 456 (520)
T ss_dssp EECCSSCCCGGGGGS----CC--TTCCEEECCSSCCCC-----CCGGGG-GCTTCCEEECCSSCC
T ss_pred EECcCCCCCcchhhh----hc--ccCCEEECCCCcccc-----cchhhh-cCCCCCEEECCCCcC
Confidence 999999998654322 11 579999999999983 112233 236799999999998
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-13 Score=137.93 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
++|++|+|++|.++.... ..+....+|++|+|++|.++. +...+...++|+.|++++|.|+..+...++..
T Consensus 217 ~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp TTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 677888888888765432 123445678888888888762 12223445678888888888876655433322
Q ss_pred H-hcCCCCccEEEecCCCC
Q 010572 453 L-KVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L-~~~~~~L~~LdL~~N~~ 470 (507)
. ......|+.|++.+|.+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SCCSSSCCBSEEECCSSSS
T ss_pred ccccccccccceEeecCcc
Confidence 1 11124678888888876
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=133.32 Aligned_cols=208 Identities=17% Similarity=0.125 Sum_probs=100.9
Q ss_pred CCccEEEeecCCCCh----hHHHHHHHHhccCCcccccccceeccccccccCCCCc-c-hHHHHHHHhCCCCCCEEEccC
Q 010572 225 ETLASLEFLHCKLSP----SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS-V-VVELVSFLSSGRSLCSLKLRH 298 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~----~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~-l-~~~L~~~L~~~~sL~~L~LS~ 298 (507)
..++.|.+....+.+ +.++.|++++.. ...++.|.+....+ +.+... + ..++..++...|+|++|+|++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~----l~~L~~L~l~~~~~-e~~~is~~~~~~L~~ll~~~P~L~~L~L~g 181 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEK----FAHFEGLFWGDIDF-EEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHH----HTTCSEEEECCCCT-TTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhh----cchhhheeecCcch-hhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence 357888888766652 244555443221 12466666543321 100000 0 012456677888888888887
Q ss_pred CC-CCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccccc---ch---hHHHHHHhhh
Q 010572 299 CH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN---LS---HIAASLGKFF 371 (507)
Q Consensus 299 N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~---l~---~~~~~L~~~l 371 (507)
|. +.-. .+ . .++|++|+|+.|.++..... ..+....++|++|.+.. +. .+...++..+
T Consensus 182 ~~~l~l~-------~~-~-~~~L~~L~L~~~~l~~~~l~------~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 182 TNNLSIG-------KK-P-RPNLKSLEIISGGLPDSVVE------DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp CBTCBCC-------SC-B-CTTCSEEEEECSBCCHHHHH------HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCceec-------cc-c-CCCCcEEEEecCCCChHHHH------HHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 72 2110 11 2 47888888888877642110 00111334444444311 00 0111222222
Q ss_pred c----CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHH
Q 010572 372 G----TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLT 447 (507)
Q Consensus 372 ~----~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~ 447 (507)
. ++|++|+|++|.+++.++..++++ +..++|++|+|+.|.+++.|++.+...+..+++|+.|+|+.|.|+++|++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 1 455555555555555555544443 23445555555555555555555554444444555555555555555555
Q ss_pred HHHHHH
Q 010572 448 IICSAL 453 (507)
Q Consensus 448 ~L~~aL 453 (507)
.|++++
T Consensus 326 ~l~~al 331 (362)
T 2ra8_A 326 ELQKSL 331 (362)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 555444
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-13 Score=136.07 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=130.8
Q ss_pred HHHHHHhCCCCCCEEEccCCCCCchHH-----HHHHHHhccCCCCccEEECcCCC-CCCcccccccCCchhhcccCCCcC
Q 010572 280 ELVSFLSSGRSLCSLKLRHCHLDRDFG-----RMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQ 353 (507)
Q Consensus 280 ~L~~~L~~~~sL~~L~LS~N~L~~~g~-----~~L~~~L~~~~~~L~~LdLS~N~-L~~~l~~~~~~~l~~~L~~~~~L~ 353 (507)
.+..++...++|+.|.+.++...+..+ ..+... ....++|++|+|++|. +. +. .+ ...+|+
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l-l~~~P~L~~L~L~g~~~l~--l~---------~~-~~~~L~ 196 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV-LDAMPLLNNLKIKGTNNLS--IG---------KK-PRPNLK 196 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH-HHTCTTCCEEEEECCBTCB--CC---------SC-BCTTCS
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHH-HhcCCCCcEEEEeCCCCce--ec---------cc-cCCCCc
Confidence 345556667899999998765432111 012222 2445899999999872 21 11 12 245677
Q ss_pred ccccccch---hHHHHHHhhhcCCCcEEEecc---CCCCchhHHHHHHhhc--CCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 354 SLRLLNLS---HIAASLGKFFGTSVQVLNIGA---IGLGSSGFRVLQDGVT--KELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 354 ~L~ll~l~---~~~~~L~~~l~~~L~~L~Ls~---n~l~~~G~~~L~~aL~--~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
+|.+.... .....++..--++|++|+|+. +..++.+.+.++..+. ..++|++|+|++|.+++.++..++.+
T Consensus 197 ~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a- 275 (362)
T 2ra8_A 197 SLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES- 275 (362)
T ss_dssp EEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-
T ss_pred EEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-
Confidence 77765443 444555433237899999864 2235555666776665 35789999999999999998888876
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHH
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFR 484 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~ 484 (507)
..+++|++|+|++|.|++.|++.|+.+++.. ++|+.|+|+.|. +++++++.|++..
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l-~~L~~L~L~~n~--i~d~~~~~l~~al 331 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLLLDHVDKI-KHLKFINMKYNY--LSDEMKKELQKSL 331 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHHHTTHHHH-TTCSEEECCSBB--CCHHHHHHHHHHC
T ss_pred ccCCCCCEEECCCCCCChHHHHHHHhhcccC-CcceEEECCCCc--CCHHHHHHHHHHc
Confidence 3567899999999999999999998877644 689999999997 5888999888754
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-13 Score=131.39 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=65.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCC-EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV-NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~-~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
++|++|+|++|.++......+.. +.....|. +|++++|.++...... ....+|++|++++|.|+.... .
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~----~ 218 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLKELALDTNQLKSVPD----G 218 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCCCEECTTS-----SCSCCEEEEECCSSCCSCCCT----T
T ss_pred CCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCcccccCccc-----cCCCcccEEECCCCceeecCH----h
Confidence 78999999999998765444433 33333444 8999999987643221 223479999999999985332 1
Q ss_pred HHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 452 ALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
++.. ..+|+.|+|++|++.-.....+.+.....
T Consensus 219 ~~~~-l~~L~~L~l~~N~~~c~c~~l~~l~~~~~ 251 (276)
T 2z62_A 219 IFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251 (276)
T ss_dssp TTTT-CCSCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred Hhcc-cccccEEEccCCcccccCCchHHHHHHHH
Confidence 2232 36899999999998333222344433333
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=131.22 Aligned_cols=204 Identities=18% Similarity=0.163 Sum_probs=140.8
Q ss_pred hHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCC
Q 010572 212 HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 291 (507)
Q Consensus 212 ~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL 291 (507)
.+......+....++|++|+|++|.+++..+..+. . ...++.|+++.+.+.+. . .+..+++|
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~-------l~~L~~L~Ls~n~l~~~-----~-----~~~~l~~L 82 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-P-------FTKLELLNLSSNVLYET-----L-----DLESLSTL 82 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT-T-------CTTCCEEECTTSCCEEE-----E-----EETTCTTC
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh-C-------CCcCCEEECCCCcCCcc-----h-----hhhhcCCC
Confidence 34444444445667999999999999876554431 1 23588888887765321 1 16778999
Q ss_pred CEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhh
Q 010572 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFF 371 (507)
Q Consensus 292 ~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l 371 (507)
++|+|++|.+++.. ..++|++|+|++|.|++... ...++|+.|.+.++. +....+..+
T Consensus 83 ~~L~Ls~n~l~~l~----------~~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~-l~~~~~~~~ 140 (317)
T 3o53_A 83 RTLDLNNNYVQELL----------VGPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNK-ITMLRDLDE 140 (317)
T ss_dssp CEEECCSSEEEEEE----------ECTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSC-CCSGGGBCT
T ss_pred CEEECcCCcccccc----------CCCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCC-CCCccchhh
Confidence 99999999987633 24899999999999986322 123456677666664 111111222
Q ss_pred c--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHH
Q 010572 372 G--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTII 449 (507)
Q Consensus 372 ~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L 449 (507)
. +.|++|+|++|.++......+. ....+|++|+|++|.++.. ......++|++|+|++|.|+.-..
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~l~~--- 208 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGP--- 208 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGG---GGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECG---
T ss_pred hccCCCCEEECCCCCCCcccHHHHh---hccCcCCEEECCCCcCccc------ccccccccCCEEECCCCcCCcchh---
Confidence 2 7899999999999876543332 2346899999999999764 122235789999999999985432
Q ss_pred HHHHhcCCCCccEEEecCCCC
Q 010572 450 CSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 450 ~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+... .+|+.|+|++|.+
T Consensus 209 --~~~~l-~~L~~L~L~~N~l 226 (317)
T 3o53_A 209 --EFQSA-AGVTWISLRNNKL 226 (317)
T ss_dssp --GGGGG-TTCSEEECTTSCC
T ss_pred --hhccc-CcccEEECcCCcc
Confidence 13332 5799999999997
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-13 Score=135.93 Aligned_cols=259 Identities=14% Similarity=0.048 Sum_probs=147.1
Q ss_pred eeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.++.|++.+..-... ...+....+|++|+++++... .+.+..+.++++|++|+|++|.++. .+..
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~--------- 120 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKNHLVE-IPPN--------- 120 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSSCCCS-CCSS---------
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCCcCCc-cCcc---------
Confidence 467777764211110 112334567788888776432 1112223466788888888887762 1100
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
. ...++.|+++.+.+... + ...+..+++|++|+|++|.++..+... ..+ ... +|++|++++|.|++.
T Consensus 121 ~-~~~L~~L~l~~n~i~~~-----~---~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~-~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 121 L-PSSLVELRIHDNRIRKV-----P---KGVFSGLRNMNCIEMGGNPLENSGFEP--GAF-DGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp C-CTTCCEEECCSSCCCCC-----C---SGGGSSCSSCCEEECCSCCCBGGGSCT--TSS-CSC-CCSCCBCCSSBCSSC
T ss_pred c-cccCCEEECCCCccCcc-----C---HhHhCCCccCCEEECCCCccccCCCCc--ccc-cCC-ccCEEECcCCCCCcc
Confidence 0 13467777776654321 1 124577888888999888887544321 111 222 666777777666631
Q ss_pred cccc---------ccCCc----hhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhc
Q 010572 334 LSKY---------DRSGP----LFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVT 398 (507)
Q Consensus 334 l~~~---------~~~~l----~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~ 398 (507)
-..+ +...+ ...+....+|+.|.+.++. +.......+. .+|++|+|++|.++. +...+.
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~ 261 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSR-----VPAGLP 261 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCB-----CCTTGG
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCee-----cChhhh
Confidence 1100 00000 0134555566666666654 1111111233 789999999999984 333466
Q ss_pred CCCCCCEEeccCCCCChHHHHHHHhhCC--CCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCC
Q 010572 399 KELKLVNINISKNRGGVETAKFLSKLMP--LAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 399 ~n~~L~~LdLs~N~i~~~g~~~L~~~L~--~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~ 469 (507)
...+|++|+|++|.++..+...++.... ..+.|+.|++++|++...++.. .++.. ..+|+.|+|++|.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~-l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRC-VTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTT-BCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc--ccccc-cchhhhhhccccc
Confidence 6788999999999999877666654321 1356999999999998433221 23433 3579999999885
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-13 Score=140.88 Aligned_cols=202 Identities=17% Similarity=0.119 Sum_probs=141.6
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.++++|+|++|.++......+ . ....++.|+++.+.+.+ +. ..++..+++|++|+|++|+|...
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~----~----~l~~L~~L~Ls~n~i~~-----i~---~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSF----K----HLRHLEILQLSRNHIRT-----IE---IGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTT----S----SCSSCCEEECCSSCCCE-----EC---GGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCcEEEccCCcCCeeCHHHh----h----CCCCCCEEECCCCcCCc-----cC---hhhccCCccCCEEECCCCcCCee
Confidence 579999999999875433221 1 12357888888776533 11 23567889999999999999865
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
.... ....++|++|+|++|.|+..... .+...++|+.|.+.++......-...+. .+|++|+|++
T Consensus 128 ~~~~-----~~~l~~L~~L~L~~N~i~~~~~~--------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 128 PNGA-----FVYLSKLKELWLRNNPIESIPSY--------AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CTTT-----SCSCSSCCEEECCSCCCCEECTT--------TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CHhH-----hhccccCceeeCCCCcccccCHH--------HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 4422 24568999999999999853221 5566677777777664311100011233 7899999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.|+... .+....+|++|+|++|.++..... .+...++|+.|+|++|.|..... .++.. ..+|+.
T Consensus 195 n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~~~~-l~~L~~ 259 (440)
T 3zyj_A 195 CNLREIP------NLTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIER----NAFDN-LQSLVE 259 (440)
T ss_dssp SCCSSCC------CCTTCSSCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECT----TSSTT-CTTCCE
T ss_pred CcCcccc------ccCCCcccCEEECCCCccCccChh----hhccCccCCEEECCCCceeEECh----hhhcC-CCCCCE
Confidence 9998643 255567899999999999875443 44556789999999999986443 23333 368999
Q ss_pred EEecCCCC
Q 010572 463 LDLTGNNW 470 (507)
Q Consensus 463 LdL~~N~~ 470 (507)
|+|++|.+
T Consensus 260 L~L~~N~l 267 (440)
T 3zyj_A 260 INLAHNNL 267 (440)
T ss_dssp EECTTSCC
T ss_pred EECCCCCC
Confidence 99999998
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-13 Score=140.71 Aligned_cols=201 Identities=20% Similarity=0.141 Sum_probs=141.3
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.++++|+|++|.++......+ . ....++.|+++.+.+.+.. ...+..+++|++|+|++|.|...
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~----~----~l~~L~~L~Ls~n~i~~~~--------~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF----R----HLHHLEVLQLGRNSIRQIE--------VGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT----T----TCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCccEEECcCCcCceECHHHc----C----CCCCCCEEECCCCccCCcC--------hhhccCcccCCEEECCCCcCCcc
Confidence 579999999999876433222 1 1235788888877653321 23467789999999999999875
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH-hhhc--CCCcEEEec
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG-KFFG--TSVQVLNIG 381 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~-~~l~--~~L~~L~Ls 381 (507)
.... ....++|++|+|++|.|+..... .+...++|+.|.+.++.... .+. ..+. .+|++|+|+
T Consensus 139 ~~~~-----~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 139 PSGA-----FEYLSKLRELWLRNNPIESIPSY--------AFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CTTT-----SSSCTTCCEEECCSCCCCEECTT--------TTTTCTTCCEEECCCCTTCC-EECTTTTTTCTTCCEEECT
T ss_pred Chhh-----hcccCCCCEEECCCCCcceeCHh--------HHhcCCcccEEeCCCCCCcc-ccChhhccCCCCCCEEECC
Confidence 5432 24568999999999999853221 55666777777776643110 111 1222 789999999
Q ss_pred cCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCcc
Q 010572 382 AIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQ 461 (507)
Q Consensus 382 ~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~ 461 (507)
+|.|+... .+....+|++|+|++|.++..... .+...++|+.|+|++|.|...... ++.. ..+|+
T Consensus 205 ~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~----~~~~-l~~L~ 269 (452)
T 3zyi_A 205 MCNIKDMP------NLTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERN----AFDG-LASLV 269 (452)
T ss_dssp TSCCSSCC------CCTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSCCCEECTT----TTTT-CTTCC
T ss_pred CCcccccc------cccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCcCceECHH----HhcC-CCCCC
Confidence 99998642 255667899999999999875443 344557899999999999864322 2332 36899
Q ss_pred EEEecCCCC
Q 010572 462 RLDLTGNNW 470 (507)
Q Consensus 462 ~LdL~~N~~ 470 (507)
.|+|++|.+
T Consensus 270 ~L~L~~N~l 278 (452)
T 3zyi_A 270 ELNLAHNNL 278 (452)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 999999998
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-12 Score=134.44 Aligned_cols=79 Identities=14% Similarity=0.031 Sum_probs=51.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
+.|++|+|++|.++.... +....+|++|+|++|.+++..+ +...++|+.|++++|.+.+. ..
T Consensus 287 ~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~ 348 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------SS 348 (466)
T ss_dssp TTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------GG
T ss_pred CccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc------hh
Confidence 567777777777665321 3445677777777777766543 23446788888888887753 12
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|++++|.+
T Consensus 349 l~~-l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 349 LAN-LTNINWLSAGHNQI 365 (466)
T ss_dssp GTT-CTTCCEEECCSSCC
T ss_pred hcc-CCCCCEEeCCCCcc
Confidence 332 35788888888886
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-13 Score=151.32 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=132.1
Q ss_pred ccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CCh-hHHHHHHHHhccCCcccccccceeccccccccC
Q 010572 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~-~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~ 272 (507)
....|++|+++++.... ..+..+.++++|++|+|++|. +++ ..+..+.. |... .....++.|+++.+.+.+
T Consensus 247 ~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~~~-~~l~~L~~L~L~~n~l~~- 319 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LADA-PVGEKIQIIYIGYNNLKT- 319 (636)
T ss_dssp GCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HHHS-GGGGTCCEEECCSSCCSS-
T ss_pred ccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hhcc-ccCCCCCEEECCCCcCCc-
Confidence 56789999998874322 122334577899999999998 988 66655532 2000 001347778877766531
Q ss_pred CCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-c-ccCC---------
Q 010572 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-Y-DRSG--------- 341 (507)
Q Consensus 273 ~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~-~~~~--------- 341 (507)
++. ...+..+++|++|+|++|.+.+... .+ ...++|++|+|++|.|+. ++. + ....
T Consensus 320 ----ip~--~~~l~~l~~L~~L~L~~N~l~g~ip-----~~-~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 320 ----FPV--ETSLQKMKKLGMLECLYNQLEGKLP-----AF-GSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ----CCC--HHHHTTCTTCCEEECCSCCCEEECC-----CC-EEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCS
T ss_pred ----cCc--hhhhccCCCCCEEeCcCCcCccchh-----hh-CCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccC
Confidence 221 1256778888888888888874433 12 233667777777776651 111 0 0000
Q ss_pred -----chhhcccC--CCcCccccccchhHHHHHHhhh--------c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCE
Q 010572 342 -----PLFSLGAG--KSLQSLRLLNLSHIAASLGKFF--------G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVN 405 (507)
Q Consensus 342 -----l~~~L~~~--~~L~~L~ll~l~~~~~~L~~~l--------~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~ 405 (507)
+...+... .+|+.|.+.++. +.+.++..+ . .+|++|+|++|.|+..... ......+|++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~~l~~L~~ 461 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE----LFSTGSPLSS 461 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH----HHHTTCCCSE
T ss_pred CcCcccchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH----HHccCCCCCE
Confidence 00011111 133444443332 111111111 1 4677777777777643211 1123456788
Q ss_pred EeccCCCCChHHHHHHHhh---CCCCCCccEEEccCCCCChhHHHHHHHHHh-cCCCCccEEEecCCCC
Q 010572 406 INISKNRGGVETAKFLSKL---MPLAPELVEVNAGYNLMPLESLTIICSALK-VAKGHLQRLDLTGNNW 470 (507)
Q Consensus 406 LdLs~N~i~~~g~~~L~~~---L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~-~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.++.-....+... ++..++|+.|+|++|.|+. +...+. ....+|+.|+|++|.+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCC
Confidence 8888887762111111100 1111278888888888873 112332 1336799999999987
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=133.47 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|+|++|+|+.. ......|++|+|++|+++.- .. . ...++|+.|+|++|.|..... .+
T Consensus 431 ~~L~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N~l~~i-p~-~----~~l~~L~~L~Ls~N~l~~~~~----~~ 492 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSF--------SLFLPRLQELYISRNKLKTL-PD-A----SLFPVLLVMKISRNQLKSVPD----GI 492 (549)
T ss_dssp TTCSEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSSC-CC-G----GGCTTCCEEECCSSCCCCCCT----TG
T ss_pred CCceEEECCCCChhhh--------cccCChhcEEECCCCccCcC-CC-c----ccCccCCEEecCCCccCCcCH----HH
Confidence 4677777777777642 12456799999999988621 11 1 234679999999999975322 12
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
+... .+|+.|+|++|++.-.-.....+.+..+.
T Consensus 493 ~~~l-~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 493 FDRL-TSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp GGGC-TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred HhcC-cccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 3333 57999999999982222224555555544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=130.33 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=102.2
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~ 363 (507)
+..+++|++|+|++|.+.+... + ...++|++|+|++|.+++.. .+...++|+.|.+.++. ..
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP------L-SGLTKLTELKLGANQISNIS----------PLAGLTALTNLELNENQLED 301 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG------G-TTCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCSC
T ss_pred hhcCCCCCEEECCCCccccchh------h-hcCCCCCEEECCCCccCccc----------cccCCCccCeEEcCCCcccC
Confidence 4556677777777777665433 1 33466777777777766421 24455667777776665 11
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
...+.. -++|++|+|++|.++.... +....+|++|++++|.+++. ..+...++|+.|++++|.+.+
T Consensus 302 ~~~~~~--l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 302 ISPISN--LKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CGGGGG--CTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCB
T ss_pred chhhcC--CCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc------hhhccCCCCCEEeCCCCccCc
Confidence 111111 1889999999999987542 45678899999999999875 245567899999999999987
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... +.. ..+|+.|++++|.+
T Consensus 368 ~~~------~~~-l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 368 LTP------LAN-LTRITQLGLNDQAW 387 (466)
T ss_dssp CGG------GTT-CTTCCEEECCCEEE
T ss_pred cch------hhc-CCCCCEEeccCCcc
Confidence 542 333 36899999999987
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-12 Score=125.90 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=113.5
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++.... +. . +..+++|++|+|++|.+++-.. +.. ...++.|+++.+.+.+
T Consensus 40 l~~L~~L~l~~~~i~~-l~----~-~~~l~~L~~L~L~~n~i~~~~~------~~~----l~~L~~L~L~~n~l~~---- 99 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE----G-VQYLNNLIGLELKDNQITDLAP------LKN----LTKITELELSGNPLKN---- 99 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT----T-GGGCTTCCEEECCSSCCCCCGG------GTT----CCSCCEEECCSCCCSC----
T ss_pred cCCcCEEEeeCCCccC-ch----h-hhccCCCCEEEccCCcCCCChh------Hcc----CCCCCEEEccCCcCCC----
Confidence 3456777776653221 11 1 2345677777777776654222 111 1235555555554322
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+ ..+..+++|++|+|++|.+.+... + ...++|++|+|++|.|++..
T Consensus 100 -~-----~~~~~l~~L~~L~l~~n~l~~~~~------l-~~l~~L~~L~l~~n~l~~~~--------------------- 145 (308)
T 1h6u_A 100 -V-----SAIAGLQSIKTLDLTSTQITDVTP------L-AGLSNLQVLYLDLNQITNIS--------------------- 145 (308)
T ss_dssp -C-----GGGTTCTTCCEEECTTSCCCCCGG------G-TTCTTCCEEECCSSCCCCCG---------------------
T ss_pred -c-----hhhcCCCCCCEEECCCCCCCCchh------h-cCCCCCCEEECCCCccCcCc---------------------
Confidence 1 124555666666666666655321 1 23466666666666665311
Q ss_pred ccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 356 RLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.+.. -..|++|+|++|.+++... +....+|++|+|++|.+++... +...++|++|+
T Consensus 146 ----------~l~~--l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~ 201 (308)
T 1h6u_A 146 ----------PLAG--LTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP------LASLPNLIEVH 201 (308)
T ss_dssp ----------GGGG--CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEE
T ss_pred ----------cccC--CCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEE
Confidence 0100 1678899999999876442 4556789999999999876543 34557899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+++|.+.+.. .+.. ..+|+.|+|++|.+
T Consensus 202 L~~N~l~~~~------~l~~-l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 202 LKNNQISDVS------PLAN-TSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTSCCCBCG------GGTT-CTTCCEEEEEEEEE
T ss_pred ccCCccCccc------cccC-CCCCCEEEccCCee
Confidence 9999998654 1333 36799999999987
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-12 Score=149.38 Aligned_cols=240 Identities=15% Similarity=0.100 Sum_probs=149.4
Q ss_pred ccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CCh-hHHHHHHHHhccCCcccccccceeccccccccC
Q 010572 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~-~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~ 272 (507)
...+|++|+|+++..... .+..+.++++|++|+|++|. +++ ..+..+. .+...-.....++.|+++.+.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~L~~- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEE- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSCCCB-
T ss_pred cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCcCCc-
Confidence 566788999887743221 22334567889999999997 887 5555542 222000011357888887776531
Q ss_pred CCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCC-
Q 010572 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS- 351 (507)
Q Consensus 273 ~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~- 351 (507)
++. ...+..+++|++|+|++|.+..- . . ....++|+.|+|++|.|+ .++. .+....+
T Consensus 563 ----ip~--~~~l~~L~~L~~L~Ls~N~l~~l-p-----~-~~~L~~L~~L~Ls~N~l~-~lp~--------~l~~l~~~ 620 (876)
T 4ecn_A 563 ----FPA--SASLQKMVKLGLLDCVHNKVRHL-E-----A-FGTNVKLTDLKLDYNQIE-EIPE--------DFCAFTDQ 620 (876)
T ss_dssp ----CCC--HHHHTTCTTCCEEECTTSCCCBC-C-----C-CCTTSEESEEECCSSCCS-CCCT--------TSCEECTT
T ss_pred ----cCC--hhhhhcCCCCCEEECCCCCcccc-h-----h-hcCCCcceEEECcCCccc-cchH--------HHhhcccc
Confidence 222 12577888999999999998832 2 2 245688999999999988 3332 4555556
Q ss_pred cCccccccchhHHHHHHhhhc----CCCcEEEeccCCCCchhHHHHHHhhc--CCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 352 LQSLRLLNLSHIAASLGKFFG----TSVQVLNIGAIGLGSSGFRVLQDGVT--KELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 352 L~~L~ll~l~~~~~~L~~~l~----~~L~~L~Ls~n~l~~~G~~~L~~aL~--~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
|+.|.+.+|. +. .++..+. .+|+.|+|++|.++...- .+...+. ...+|++|+|++|.++.-....+.
T Consensus 621 L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~--- 694 (876)
T 4ecn_A 621 VEGLGFSHNK-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKFPTELFA--- 694 (876)
T ss_dssp CCEEECCSSC-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH---
T ss_pred CCEEECcCCC-CC-cCchhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCcCCccCHHHHc---
Confidence 7777777765 11 3444333 349999999999974320 1111111 234799999999999843333222
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhc---CCCCccEEEecCCCC
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKV---AKGHLQRLDLTGNNW 470 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~---~~~~L~~LdL~~N~~ 470 (507)
..++|+.|+|++|.|+.-.. .+...... +..+|+.|+|++|.+
T Consensus 695 -~l~~L~~L~Ls~N~L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 695 -TGSPISTIILSNNLMTSIPE-NSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp -TTCCCSEEECCSCCCSCCCT-TSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred -cCCCCCEEECCCCcCCccCh-HHhccccccccccCCccEEECCCCCC
Confidence 34789999999999983110 00000000 001799999999998
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-13 Score=137.12 Aligned_cols=164 Identities=18% Similarity=0.062 Sum_probs=107.0
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-cccCCchhhcccCCCcCccccccchhH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-YDRSGPLFSLGAGKSLQSLRLLNLSHI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~~~~~l~~~L~~~~~L~~L~ll~l~~~ 363 (507)
+..+++|++|+|++|.+..- .. .+ ...++|++|+|++|++.+.++. +........+...++|+.|.+.++. +
T Consensus 123 ~~~l~~L~~L~Ls~n~l~~l-p~----~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l 195 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLRAL-PA----SI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-I 195 (328)
T ss_dssp GGGGTTCSEEEEESCCCCCC-CG----GG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-C
T ss_pred HhccCCCCEEECCCCccccC-cH----HH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-c
Confidence 45677888888888888732 21 22 3457888888888777654432 1000111134445666666666554 1
Q ss_pred HHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCC
Q 010572 364 AASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 364 ~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
. .++..+. .+|++|+|++|.++.. ...+....+|++|+|++|.+....+ ..+...++|+.|+|++|.+
T Consensus 196 ~-~lp~~l~~l~~L~~L~L~~N~l~~l-----~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 196 R-SLPASIANLQNLKSLKIRNSPLSAL-----GPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp C-CCCGGGGGCTTCCEEEEESSCCCCC-----CGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTTCTT
T ss_pred C-cchHhhcCCCCCCEEEccCCCCCcC-----chhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCCCCc
Confidence 1 3333343 7899999999999842 2345667889999999998776533 2345567899999999887
Q ss_pred ChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 442 PLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 442 ~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...-.. .+.. ..+|+.|+|++|.+
T Consensus 266 ~~~~p~----~~~~-l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 266 LLTLPL----DIHR-LTQLEKLDLRGCVN 289 (328)
T ss_dssp CCBCCT----TGGG-CTTCCEEECTTCTT
T ss_pred hhhcch----hhhc-CCCCCEEeCCCCCc
Confidence 643221 2333 36899999999987
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=134.41 Aligned_cols=177 Identities=19% Similarity=0.153 Sum_probs=104.2
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
...++|++|+|++|.+.+..... + ...++|++|+|++|.|++... +...+...++|+.|.+.+|. ...
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~----~-~~l~~L~~L~L~~N~l~~~~~------~~~~~~~l~~L~~L~l~~N~-l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG----C-STLKRLQTLILQRNGLKNFFK------VALMTKNMSSLETLDVSLNS-LNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT----C-CSCSSCCEEECCSSCCCBTTH------HHHTTTTCTTCCEEECTTSC-CBS
T ss_pred cCCCCceEEECCCCccccchhhh----h-cccCCCCEEECCCCCcCCccc------chhhhcCCCCCCEEECCCCc-CCC
Confidence 45567777777777776643321 1 345677777777777764110 01134555666666666554 111
Q ss_pred HHHh-hhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 366 SLGK-FFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 366 ~L~~-~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
.++. .+. ..|++|+|++|.++.... ..++ .+|++|+|++|.++. +...+...++|++|+|++|.|.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVF----RCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCC--TTCSEEECCSSCCCC-----CCTTTTSSCCCSEEECCSSCCC
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchh----hhhc--CcCCEEECCCCcCcc-----cChhhcCCCCCCEEECCCCCCC
Confidence 1111 122 678888888888864321 1121 579999999999873 2222335578999999999998
Q ss_pred hhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 443 LESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 443 ~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
.-... ++.. ..+|+.|+|++|+|.-.-.....+..........
T Consensus 487 ~l~~~----~~~~-l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~ 529 (562)
T 3a79_B 487 SVPDG----VFDR-LTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529 (562)
T ss_dssp CCCTT----STTT-CTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTT
T ss_pred CCCHH----HHhc-CCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCc
Confidence 42211 2333 3579999999999833333445555455554443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=141.14 Aligned_cols=257 Identities=20% Similarity=0.128 Sum_probs=151.7
Q ss_pred ceeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
..++.|+|....-.... ..+....+|++|+++++.... +.+..+.++++|++|+|++|.++.-....+ .
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~-- 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTF----A-- 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTT----T--
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhh----c--
Confidence 45777888642211111 123445678888887664321 111122355788888888887763211111 0
Q ss_pred CcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
....++.|+++.+.+.+.. ...+..+++|++|+|++|.+.+..... ....++|++|+|++|.|++
T Consensus 95 --~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 95 --FCTNLTELHLMSNSIQKIK--------NNPFVKQKNLITLDLSHNGLSSTKLGT-----QVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp --TCTTCSEEECCSSCCCCCC--------SCTTTTCTTCCEEECCSSCCSCCCCCS-----SSCCTTCCEEECCSSCCCC
T ss_pred --cCCCCCEEECCCCccCccC--------hhHccccCCCCEEECCCCcccccCchh-----hcccccCCEEEccCCcccc
Confidence 1134677777766543211 123566778888888888887654321 1345788888888888875
Q ss_pred cccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 333 ~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
.... ......+.+|+.|.+.++. ..+..+..+. ..|+.|++++|.++......++..+. ..+|++|++++
T Consensus 160 ~~~~------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~-~~~L~~L~L~~ 231 (680)
T 1ziw_A 160 LKSE------ELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-NTSIRNLSLSN 231 (680)
T ss_dssp BCHH------HHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT-TSCCCEEECTT
T ss_pred cCHH------HhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh-hccccEEEccC
Confidence 3221 0012233456666665553 1111112222 56788888888887666666665553 47899999999
Q ss_pred CCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 411 NRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 411 N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|.++......+... ..++|++|++++|.+...+.. ++.. ..+|+.|+|++|.+
T Consensus 232 n~l~~~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~~----~~~~-l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 232 SQLSTTSNTTFLGL--KWTNLTMLDLSYNNLNVVGND----SFAW-LPQLEYFFLEYNNI 284 (680)
T ss_dssp SCCCEECTTTTGGG--GGSCCCEEECTTSCCCEECTT----TTTT-CTTCCEEECCSCCB
T ss_pred CcccccChhHhhcc--CcCCCCEEECCCCCcCccCcc----cccC-cccccEeeCCCCcc
Confidence 99887665554432 124599999999999864422 2332 36899999999987
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-12 Score=136.70 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=130.8
Q ss_pred CCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCC
Q 010572 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~ 302 (507)
..++|++|+|++|.+++..+..+ .. ...++.|+++.|.+.+. .+ +..+++|++|+|++|.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~----~~----l~~L~~L~Ls~N~l~~~-----~~-----l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADL----AP----FTKLELLNLSSNVLYET-----LD-----LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGG----TT----CTTCCEEECTTSCCEEE-----EE-----CTTCTTCCEEECCSSEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHH----hC----CCCCCEEEeeCCCCCCC-----cc-----cccCCCCCEEEecCCcCC
Confidence 33478888888887775332221 11 13467777776654321 11 577899999999999997
Q ss_pred chHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEe
Q 010572 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNI 380 (507)
Q Consensus 303 ~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~L 380 (507)
+.. +.++|++|+|++|.|++.... ..++|+.|.+.+|. +.+..+..+. ++|++|+|
T Consensus 94 ~l~----------~~~~L~~L~L~~N~l~~~~~~-----------~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 94 ELL----------VGPSIETLHAANNNISRVSCS-----------RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp EEE----------ECTTCCEEECCSSCCCCEEEC-----------CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEEC
T ss_pred CCC----------CCCCcCEEECcCCcCCCCCcc-----------ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEEC
Confidence 632 238999999999999963321 23456777776664 1112222333 78999999
Q ss_pred ccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCc
Q 010572 381 GAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHL 460 (507)
Q Consensus 381 s~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L 460 (507)
++|.|+......+.. ...+|++|+|++|.++.. ......++|+.|+|++|.|+.-.. .+.. ..+|
T Consensus 152 s~N~l~~~~~~~l~~---~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~-l~~L 216 (487)
T 3oja_A 152 KLNEIDTVNFAELAA---SSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGP-----EFQS-AAGV 216 (487)
T ss_dssp TTSCCCEEEGGGGGG---GTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECG-----GGGG-GTTC
T ss_pred CCCCCCCcChHHHhh---hCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCCCH-----hHcC-CCCc
Confidence 999998765333322 346899999999999865 123346789999999999986332 1332 2589
Q ss_pred cEEEecCCCC
Q 010572 461 QRLDLTGNNW 470 (507)
Q Consensus 461 ~~LdL~~N~~ 470 (507)
+.|+|++|.+
T Consensus 217 ~~L~Ls~N~l 226 (487)
T 3oja_A 217 TWISLRNNKL 226 (487)
T ss_dssp SEEECTTSCC
T ss_pred cEEEecCCcC
Confidence 9999999997
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-12 Score=124.69 Aligned_cols=171 Identities=17% Similarity=0.052 Sum_probs=93.9
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
+..+++|++|+|++|.++..... ...++|++|+|++|.|+.. +. .+...++|+.|.+.+|. +.
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~-------~~l~~L~~L~Ls~N~l~~l-~~--------~~~~l~~L~~L~l~~N~-l~ 113 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVD-------GTLPVLGTLDLSHNQLQSL-PL--------LGQTLPALTVLDVSFNR-LT 113 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECC-------SCCTTCCEEECCSSCCSSC-CC--------CTTTCTTCCEEECCSSC-CC
T ss_pred hhcCCCCCEEECCCCccCcccCC-------CCCCcCCEEECCCCcCCcC-ch--------hhccCCCCCEEECCCCc-Cc
Confidence 34455555666665555543221 2235555666665555521 10 22333344444444432 00
Q ss_pred HHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 365 ASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 365 ~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
...+..+. .+|++|+|++|.|+... .+++....+|++|+|++|.++.-.. .++...++|+.|+|++|.|.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLP----PGLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCSSCCC
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccC----hhhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCCCcCC
Confidence 00011122 67889999999987532 2234456789999999998874322 23445578999999999997
Q ss_pred hhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 443 LESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 443 ~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
.-. ..+... .+|+.|+|++|+|.-..+. ..+.....++
T Consensus 186 ~ip-----~~~~~~-~~L~~l~L~~Np~~C~c~~-~~l~~wl~~~ 223 (290)
T 1p9a_G 186 TIP-----KGFFGS-HLLPFAFLHGNPWLCNCEI-LYFRRWLQDN 223 (290)
T ss_dssp CCC-----TTTTTT-CCCSEEECCSCCBCCSGGG-HHHHHHHHHT
T ss_pred ccC-----hhhccc-ccCCeEEeCCCCccCcCcc-HHHHHHHHhC
Confidence 311 122222 4799999999998433333 3344444443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-12 Score=122.54 Aligned_cols=182 Identities=18% Similarity=0.167 Sum_probs=106.2
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.++++|+|++|.++.-.... +. ....++.|+++.+.+.+ ++. .++..+++|++|+|++|.+...
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~----~~----~l~~L~~L~l~~n~l~~-----i~~---~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKA----FH----RLTKLRLLYLNDNKLQT-----LPA---GIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTS----SS----SCTTCCEEECCSSCCSC-----CCT---TTTSSCTTCCEEECCSSCCCCC
T ss_pred CCCCEEECcCCCCCeeCHHH----hc----CCCCCCEEECCCCccCe-----eCh---hhhcCCCCCCEEECCCCcCCcC
Confidence 46888888888765321110 00 01234555555444321 111 1234455666666666666543
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
.... ....++|++|+|++|.|++..+ ..+. .+|++|+|++
T Consensus 101 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~---------------------------------~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 101 PIGV-----FDQLVNLAELRLDRNQLKSLPP---------------------------------RVFDSLTKLTYLSLGY 142 (270)
T ss_dssp CTTT-----TTTCSSCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEECCS
T ss_pred CHhH-----cccccCCCEEECCCCccCeeCH---------------------------------HHhCcCcCCCEEECCC
Confidence 3211 1234566666666666654211 1111 6789999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.|+.... .++....+|++|+|++|.++..... .+...++|++|+|++|.|..-.. .++.. ..+|+.
T Consensus 143 n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~----~~~~~-l~~L~~ 209 (270)
T 2o6q_A 143 NELQSLPK----GVFDKLTSLKELRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLKRVPE----GAFDS-LEKLKM 209 (270)
T ss_dssp SCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCCSCCCT----TTTTT-CTTCCE
T ss_pred CcCCccCH----hHccCCcccceeEecCCcCcEeChh----HhccCCCcCEEECCCCcCCcCCH----HHhcc-ccCCCE
Confidence 99876432 2244567899999999998764332 34455789999999999975332 12332 357999
Q ss_pred EEecCCCCCCC
Q 010572 463 LDLTGNNWELQ 473 (507)
Q Consensus 463 LdL~~N~~~~~ 473 (507)
|+|++|+|.-.
T Consensus 210 L~l~~N~~~c~ 220 (270)
T 2o6q_A 210 LQLQENPWDCT 220 (270)
T ss_dssp EECCSSCBCCS
T ss_pred EEecCCCeeCC
Confidence 99999998433
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-13 Score=151.96 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=56.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|++|+|++|.|+.... .++....+|++|+|++|.++.... ..+...++|+.|++++|.|+.-... +
T Consensus 290 ~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~----~ 357 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYS----SNFYGLPKVAYIDLQKNHIAIIQDQ----T 357 (844)
T ss_dssp CCCCEEEEESCCCCEECT----TTTTTCSSCCEEEEESCCCSCCCS----CSCSSCTTCCEEECCSCCCCCCCSS----C
T ss_pred CCCCEEECCCCcCCCCCh----HHhcCCCCCCEEECCCCCCCccCH----HHhcCCCCCCEEECCCCCCCccChh----h
Confidence 667777777777765432 234445678888888888764322 2344557788889988888653321 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 358 ~~~-l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 358 FKF-LEKLQTLDLRDNAL 374 (844)
T ss_dssp SCS-CCCCCEEEEETCCS
T ss_pred hcC-CCCCCEEECCCCCC
Confidence 322 36899999999987
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-13 Score=134.29 Aligned_cols=206 Identities=17% Similarity=0.092 Sum_probs=136.5
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
++|++|+|++|.++.-. ...+.. ...++.|+++.+.+..... . ...+..+++|++|+|++|.+...
T Consensus 28 ~~l~~L~L~~n~l~~i~-~~~~~~-------l~~L~~L~L~~n~l~~~~~--~----~~~~~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 28 SSATRLELESNKLQSLP-HGVFDK-------LTQLTKLSLSSNGLSFKGC--C----SQSDFGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTT-------CTTCSEEECCSSCCCEEEE--E----EHHHHSCSCCCEEECCSCSEEEE
T ss_pred CCCCEEECCCCccCccC-HhHhhc-------cccCCEEECCCCccCcccC--c----ccccccccccCEEECCCCccccC
Confidence 58999999999887321 111111 2357788887766432111 0 12345689999999999998753
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
.. .+ ...++|++|+|++|.+++.... ..+...++|+.|.+.++. .....+..+. .+|++|+|++
T Consensus 94 ~~-----~~-~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 94 SS-----NF-LGLEQLEHLDFQHSNLKQMSEF-------SVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp EE-----EE-ETCTTCCEEECTTSEEESSTTT-------TTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTT
T ss_pred hh-----hc-CCCCCCCEEECCCCcccccccc-------hhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCC
Confidence 22 22 3468999999999999853210 145556667777776654 1111222333 7899999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.++... +...+....+|++|+|++|.++...+. .+...++|++|+|++|.+...... .+.. ..+|+.
T Consensus 160 n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~----~~~~-l~~L~~ 227 (306)
T 2z66_A 160 NSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTF----PYKC-LNSLQV 227 (306)
T ss_dssp CEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSG----GGTT-CTTCCE
T ss_pred Ccccccc---chhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChh----hccC-cccCCE
Confidence 9986421 223345567899999999999875443 344567899999999999864322 2332 368999
Q ss_pred EEecCCCC
Q 010572 463 LDLTGNNW 470 (507)
Q Consensus 463 LdL~~N~~ 470 (507)
|+|++|.+
T Consensus 228 L~L~~N~l 235 (306)
T 2z66_A 228 LDYSLNHI 235 (306)
T ss_dssp EECTTSCC
T ss_pred eECCCCCC
Confidence 99999997
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=131.22 Aligned_cols=203 Identities=15% Similarity=0.098 Sum_probs=120.5
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
+++.|++....-. .+..+....+|++|+++++.... + + ++.+++|++|+|++|.+++.. +..
T Consensus 43 ~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~----~-~--~~~l~~L~~L~Ls~N~l~~~~-------~~~--- 104 (457)
T 3bz5_A 43 TLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNITT----L-D--LSQNTNLTYLACDSNKLTNLD-------VTP--- 104 (457)
T ss_dssp TCCEEECCSSCCC-CCTTGGGCTTCSEEECCSSCCSC----C-C--CTTCTTCSEEECCSSCCSCCC-------CTT---
T ss_pred CCCEEEccCCCcc-cChhhcccCCCCEEEccCCcCCe----E-c--cccCCCCCEEECcCCCCceee-------cCC---
Confidence 4677777642111 11233345577778877764322 1 1 345677888888888776531 111
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l 334 (507)
...++.|+++.+.+.+. + +..+++|++|+|++|++.+.. + ...++|++|++++|...+.+
T Consensus 105 -l~~L~~L~L~~N~l~~l-----~------~~~l~~L~~L~l~~N~l~~l~-------l-~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 105 -LTKLTYLNCDTNKLTKL-----D------VSQNPLLTYLNCARNTLTEID-------V-SHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp -CTTCCEEECCSSCCSCC-----C------CTTCTTCCEEECTTSCCSCCC-------C-TTCTTCCEEECTTCSCCCCC
T ss_pred -CCcCCEEECCCCcCCee-----c------CCCCCcCCEEECCCCccceec-------c-ccCCcCCEEECCCCCccccc
Confidence 13466777766654321 1 456677888888888877631 1 34577888888877543321
Q ss_pred cccccCCchhhcccCCCcCccccccch-hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 335 SKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 335 ~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
.+...++|+.|.+.++. .. ++ +. +.|++|++++|.++... +....+|++|+|++|
T Consensus 165 ----------~~~~l~~L~~L~ls~n~l~~---l~--l~~l~~L~~L~l~~N~l~~~~-------l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 ----------DVTPQTQLTTLDCSFNKITE---LD--VSQNKLLNRLNCDTNNITKLD-------LNQNIQLTFLDCSSN 222 (457)
T ss_dssp ----------CCTTCTTCCEEECCSSCCCC---CC--CTTCTTCCEEECCSSCCSCCC-------CTTCTTCSEEECCSS
T ss_pred ----------ccccCCcCCEEECCCCccce---ec--cccCCCCCEEECcCCcCCeec-------cccCCCCCEEECcCC
Confidence 23334455555555553 11 11 22 67888888888887642 445667888888888
Q ss_pred CCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 412 RGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
.++.-. +...++|+.|++++|.|+..
T Consensus 223 ~l~~ip-------~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 223 KLTEID-------VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCSCCC-------CTTCTTCSEEECCSSCCSCC
T ss_pred cccccC-------ccccCCCCEEEeeCCcCCCc
Confidence 877621 44556788888888888753
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-13 Score=153.18 Aligned_cols=260 Identities=16% Similarity=0.106 Sum_probs=165.2
Q ss_pred cCceeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhc
Q 010572 172 FGHYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC 250 (507)
Q Consensus 172 ~~~~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~ 250 (507)
....++.|+|....-... ...+....+|++|+++++..... +-+..+.++++|++|+|++|.++...+..+ .
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~---i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~----~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAF----Q 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE---ECTTTTSSCTTCCEEECTTCCCCEECTTSS----C
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc---cCHHHhcCCCCCCEEECCCCcCcccCHhHc----c
Confidence 335689999975221111 12345567899999988732111 101223577899999999999876433221 1
Q ss_pred cCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCC
Q 010572 251 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (507)
Q Consensus 251 ~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L 330 (507)
....++.|+++.|.+.+... . ..++..+++|++|+|++|.+...+.. .. ....++|++|+|++|.|
T Consensus 95 ----~l~~L~~L~Ls~n~l~~~~~----~--~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~-~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 95 ----GLFHLFELRLYFCGLSDAVL----K--DGYFRNLKALTRLDLSKNQIRSLYLH---PS-FGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp ----SCSSCCCEECTTCCCSSCCS----T--TCCCSSCSSCCEEEEESCCCCCCCCC---GG-GGTCSSCCEEEEESSCC
T ss_pred ----CCcccCEeeCcCCCCCcccc----c--CccccccCCCCEEECCCCcccccccc---hh-HhhCCCCCEEECCCCcC
Confidence 12357888888776533111 0 12367889999999999999875431 11 24569999999999999
Q ss_pred CCcccccccCCchhhcccC--CCcCccccccchhHHHHHHh-------hhc-CCCcEEEeccCCCCchhHHHHHHhhcC-
Q 010572 331 GGWLSKYDRSGPLFSLGAG--KSLQSLRLLNLSHIAASLGK-------FFG-TSVQVLNIGAIGLGSSGFRVLQDGVTK- 399 (507)
Q Consensus 331 ~~~l~~~~~~~l~~~L~~~--~~L~~L~ll~l~~~~~~L~~-------~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~- 399 (507)
++..+. .+... ++|+.|.+.++. ..+..+. .+. .+|++|+|++|.++......+...+..
T Consensus 161 ~~~~~~--------~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 161 FLVCEH--------ELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CCCCSG--------GGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred CeeCHH--------HcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 864322 22222 456666665554 1111111 111 359999999999877655555443211
Q ss_pred ---------------------------------CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 400 ---------------------------------ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 400 ---------------------------------n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
..+|++|+|++|.++.... ..+...++|+.|+|++|.++....
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS----RVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS----CCSSSCCCCCEEEEESCCCCEECT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh----hhhhcCCCCCEEECCCCcCCCCCh
Confidence 2469999999999876432 345566889999999999986432
Q ss_pred HHHHHHHhcCCCCccEEEecCCCC
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.+
T Consensus 308 ----~~~~~-l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 308 ----EAFYG-LDNLQVLNLSYNLL 326 (844)
T ss_dssp ----TTTTT-CSSCCEEEEESCCC
T ss_pred ----HHhcC-CCCCCEEECCCCCC
Confidence 23333 35899999999997
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-12 Score=141.18 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=73.9
Q ss_pred hcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHH
Q 010572 345 SLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLS 422 (507)
Q Consensus 345 ~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~ 422 (507)
.+...++|+.|.+.++. .....+..+. ++|++|+|++|.++... +...+....+|++|+|++|.++...+.
T Consensus 419 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 491 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQISWG--- 491 (606)
T ss_dssp TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTT---
T ss_pred hhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCccChh---
Confidence 34445556666655554 1111222333 77888888888876421 223344567899999999999875443
Q ss_pred hhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 423 KLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 423 ~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+...++|++|+|++|.+...... ++.. ..+|+.|+|++|.+
T Consensus 492 -~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~-l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 492 -VFDTLHRLQLLNMSHNNLLFLDSS----HYNQ-LYSLSTLDCSFNRI 533 (606)
T ss_dssp -TTTTCTTCCEEECCSSCCSCEEGG----GTTT-CTTCCEEECTTSCC
T ss_pred -hhcccccCCEEECCCCcCCCcCHH----HccC-CCcCCEEECCCCcC
Confidence 344567899999999999864322 2332 35799999999998
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-12 Score=137.06 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=34.7
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
...+...++|++|+|+++.+.+.....+...+. .++|++|++++|.+++.
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITER 291 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSC
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeecc
Confidence 345667778888888888887777666655442 25788888888877753
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-12 Score=125.96 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=83.6
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc-ccccccCCchhhcccCCCcCccccccch--
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW-LSKYDRSGPLFSLGAGKSLQSLRLLNLS-- 361 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~-l~~~~~~~l~~~L~~~~~L~~L~ll~l~-- 361 (507)
+..+++|++|++++|.+....... ....++|++|+|++|.|++. ++. .+...++|++|.+.++.
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~l~~--------~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFKLPE--------YFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCCCCG--------GGGGCTTCCEEECCSSCCC
T ss_pred hcCCccccEEECCCCCccccCchh-----cccCCCCCEEECcCCccceecCch--------hhccCCCCCEEECCCCCCC
Confidence 344556666666666655433211 12345566666666666531 111 34444445555554443
Q ss_pred -hHHHHHHhhhc-CCCc-EEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC
Q 010572 362 -HIAASLGKFFG-TSVQ-VLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 362 -~~~~~L~~~l~-~~L~-~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
.....+..... ..+. +|++++|.++..... .....+|++|+|++|.++.... .++...++|+.|++++
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-----~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTT-----SSCSCCEEEEECCSSCCSCCCT----TTTTTCCSCCEEECCS
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCcc-----ccCCCcccEEECCCCceeecCH----hHhcccccccEEEccC
Confidence 00111111111 2233 899999999864321 2234479999999999885432 3345568899999999
Q ss_pred CCCChhH--HHHHHHHHhc
Q 010572 439 NLMPLES--LTIICSALKV 455 (507)
Q Consensus 439 N~l~~~g--~~~L~~aL~~ 455 (507)
|++..+. ...+...++.
T Consensus 234 N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 234 NPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp SCBCCCTTTTHHHHHHHHH
T ss_pred CcccccCCchHHHHHHHHh
Confidence 9998543 4555555554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=115.77 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=104.6
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
++|++|++++|.+..- + .+.. ...++.|+++.+.+.+ ++ . +..+++|++|+|++|.+.+-
T Consensus 46 ~~L~~L~l~~~~i~~~--~----~~~~----l~~L~~L~L~~n~l~~-----~~----~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--Q----GIQY----LPNVTKLFLNGNKLTD-----IK----P-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTCCEEECTTSCCCCC--T----TGGG----CTTCCEEECCSSCCCC-----CG----G-GTTCTTCCEEECCSSCCCCG
T ss_pred CcccEEEccCCCcccC--h----hHhc----CCCCCEEEccCCccCC-----Cc----c-cccCCCCCEEECCCCcCCCC
Confidence 5678888888776532 1 1111 1235555555554322 11 1 45566666666666666553
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCC
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIG 384 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~ 384 (507)
. .+ ...++|++|+|++|.|++. . .+.. -.+|++|+|++|.
T Consensus 106 ~------~l-~~l~~L~~L~L~~n~i~~~-~---------~l~~-----------------------l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 106 S------SL-KDLKKLKSLSLEHNGISDI-N---------GLVH-----------------------LPQLESLYLGNNK 145 (291)
T ss_dssp G------GG-TTCTTCCEEECTTSCCCCC-G---------GGGG-----------------------CTTCCEEECCSSC
T ss_pred h------hh-ccCCCCCEEECCCCcCCCC-h---------hhcC-----------------------CCCCCEEEccCCc
Confidence 2 12 3346666666666666541 0 0111 1678889999998
Q ss_pred CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEE
Q 010572 385 LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLD 464 (507)
Q Consensus 385 l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~Ld 464 (507)
++.. ..+....+|++|+|++|.+++... +...++|++|++++|.|++-. ++.. ..+|+.|+
T Consensus 146 l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l~------~l~~-l~~L~~L~ 206 (291)
T 1h6t_A 146 ITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDLR------ALAG-LKNLDVLE 206 (291)
T ss_dssp CCCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBCG------GGTT-CTTCSEEE
T ss_pred CCcc------hhhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCCh------hhcc-CCCCCEEE
Confidence 8764 345667789999999999877543 445678999999999998632 2443 36799999
Q ss_pred ecCCCC
Q 010572 465 LTGNNW 470 (507)
Q Consensus 465 L~~N~~ 470 (507)
|++|.+
T Consensus 207 l~~n~i 212 (291)
T 1h6t_A 207 LFSQEC 212 (291)
T ss_dssp EEEEEE
T ss_pred CcCCcc
Confidence 999986
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=114.86 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=106.4
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
++|++|++++|.+..- + .+.. ...++.|+++.+.+.+ ++ . +..+++|++|+|++|.+.+.
T Consensus 41 ~~L~~L~l~~~~i~~l--~----~~~~----l~~L~~L~L~~n~i~~-----~~----~-~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI--E----GVQY----LNNLIGLELKDNQITD-----LA----P-LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HTCCEEECTTSCCCCC--T----TGGG----CTTCCEEECCSSCCCC-----CG----G-GTTCCSCCEEECCSCCCSCC
T ss_pred CCcCEEEeeCCCccCc--h----hhhc----cCCCCEEEccCCcCCC-----Ch----h-HccCCCCCEEEccCCcCCCc
Confidence 4678888887766531 0 1111 1235555555544322 11 1 45556666666666666553
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
. .+ ...++|++|+|++|.|++.. . +. ++|++|+|++
T Consensus 101 ~------~~-~~l~~L~~L~l~~n~l~~~~----------------------------------~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 101 S------AI-AGLQSIKTLDLTSTQITDVT----------------------------------P-LAGLSNLQVLYLDL 138 (308)
T ss_dssp G------GG-TTCTTCCEEECTTSCCCCCG----------------------------------G-GTTCTTCCEEECCS
T ss_pred h------hh-cCCCCCCEEECCCCCCCCch----------------------------------h-hcCCCCCCEEECCC
Confidence 2 12 23466666666666665310 0 11 6789999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.++.... +....+|++|+|++|.+++... +...++|++|++++|.+++... +... .+|+.
T Consensus 139 n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~------l~~l-~~L~~ 199 (308)
T 1h6u_A 139 NQITNISP------LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP------LASL-PNLIE 199 (308)
T ss_dssp SCCCCCGG------GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG------GGGC-TTCCE
T ss_pred CccCcCcc------ccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh------hcCC-CCCCE
Confidence 99987543 5567889999999999987433 4566889999999999986442 4433 68999
Q ss_pred EEecCCCC
Q 010572 463 LDLTGNNW 470 (507)
Q Consensus 463 LdL~~N~~ 470 (507)
|+|++|.+
T Consensus 200 L~L~~N~l 207 (308)
T 1h6u_A 200 VHLKNNQI 207 (308)
T ss_dssp EECTTSCC
T ss_pred EEccCCcc
Confidence 99999997
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7.7e-11 Score=115.94 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=55.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|+|++|.++.... ..+....+|++|+|++|.++.... ..+...++|++|++++|.|..... .+
T Consensus 133 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~ 200 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPK----GVFDKLTNLTELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKSVPD----GV 200 (272)
T ss_dssp TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TT
T ss_pred CCCCEEECCCCccCccCH----HHhccCccCCEEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCccCH----HH
Confidence 567888888888764331 223445678888888888775432 223445678888888888874322 12
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 201 ~~~-l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 201 FDR-LTSLQYIWLHDNPW 217 (272)
T ss_dssp TTT-CTTCCEEECCSSCB
T ss_pred HhC-CcCCCEEEccCCCc
Confidence 232 35788888888887
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-11 Score=116.84 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=103.7
Q ss_pred CccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchH
Q 010572 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (507)
Q Consensus 226 ~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g 305 (507)
..++++++++.++.- +. .. ...++.|+++.+.+.... ...+..+++|++|+|++|.+.+..
T Consensus 15 ~~~~l~~~~~~l~~~-p~---------~~-~~~l~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 15 GKKEVDCQGKSLDSV-PS---------GI-PADTEKLDLQSTGLATLS--------DATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp GGTEEECTTCCCSSC-CS---------CC-CTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCeEEecCCCCcccc-CC---------CC-CCCCCEEEccCCCcCccC--------HhHhcCcccCCEEECCCCcCCccC
Confidence 456677777665420 00 01 124666766666543211 123556777777777777777654
Q ss_pred HHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCC
Q 010572 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGL 385 (507)
Q Consensus 306 ~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l 385 (507)
... ....++|++|+|++|.|++.... .+... .+|++|+|++|.|
T Consensus 76 ~~~-----~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l-----------------------~~L~~L~L~~N~l 119 (251)
T 3m19_A 76 AGV-----FDDLTELGTLGLANNQLASLPLG--------VFDHL-----------------------TQLDKLYLGGNQL 119 (251)
T ss_dssp TTT-----TTTCTTCCEEECTTSCCCCCCTT--------TTTTC-----------------------TTCCEEECCSSCC
T ss_pred HhH-----hccCCcCCEEECCCCcccccChh--------Hhccc-----------------------CCCCEEEcCCCcC
Confidence 321 13457777777777777642211 11111 5677888888887
Q ss_pred CchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEe
Q 010572 386 GSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDL 465 (507)
Q Consensus 386 ~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL 465 (507)
+.... ..+....+|++|+|++|.++.... ..+...++|++|+|++|.|..... .++.. ..+|+.|+|
T Consensus 120 ~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~-l~~L~~L~l 186 (251)
T 3m19_A 120 KSLPS----GVFDRLTKLKELRLNTNQLQSIPA----GAFDKLTNLQTLSLSTNQLQSVPH----GAFDR-LGKLQTITL 186 (251)
T ss_dssp CCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTT-CTTCCEEEC
T ss_pred CCcCh----hHhccCCcccEEECcCCcCCccCH----HHcCcCcCCCEEECCCCcCCccCH----HHHhC-CCCCCEEEe
Confidence 64321 123445678888888888765332 234445678888888888874322 12332 257888888
Q ss_pred cCCCCC
Q 010572 466 TGNNWE 471 (507)
Q Consensus 466 ~~N~~~ 471 (507)
++|.+.
T Consensus 187 ~~N~~~ 192 (251)
T 3m19_A 187 FGNQFD 192 (251)
T ss_dssp CSCCBC
T ss_pred eCCcee
Confidence 888873
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-12 Score=137.88 Aligned_cols=169 Identities=16% Similarity=0.116 Sum_probs=98.1
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
..+++|++|+|++|.+...... ....++|++|+|++|.+++..+. ..+...++|+.|.+.++. ...
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~-l~~ 435 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLKQMSEF-------SVFLSLRNLIYLDISHTH-TRV 435 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEEESCTTS-------CTTTTCTTCCEEECTTSC-CEE
T ss_pred cccCccCEEECCCCcccccccc------ccccCCCCEEEccCCccccccch-------hhhhcCCCCCEEeCcCCc-ccc
Confidence 3444555555555554432211 12234555555555555432110 134455566666665553 111
Q ss_pred HHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 366 SLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 366 ~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
..+..+. ++|++|+|++|.+++.. +...+....+|++|+|++|.++...+.. +...++|++|++++|.+..
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSC
T ss_pred cchhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCChhh----hhcccCCCEEeCCCCcCCC
Confidence 1222333 78999999999886321 2234555678999999999998765443 4455789999999999976
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHH
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSML 480 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l 480 (507)
... +++.. ..+|+.|+|++|++.-.-.....+
T Consensus 509 ~~~----~~~~~-l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 509 VPD----GIFDR-LTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCT----TTTTT-CTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCH----HHhhc-ccCCcEEEecCCcccCCCcchHHH
Confidence 432 12333 368999999999983333333444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-11 Score=118.14 Aligned_cols=217 Identities=13% Similarity=0.050 Sum_probs=138.2
Q ss_pred ccccccccccccceecccCceeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeec
Q 010572 155 MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH 234 (507)
Q Consensus 155 ~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~ 234 (507)
++|.| .+..|.-.. ..+.+++...--. .+.... ...+++|+++++... .+.+..+.++++|++|+|++
T Consensus 3 ~~C~~-----~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~-~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~ 70 (270)
T 2o6q_A 3 ALCKK-----DGGVCSCNN-NKNSVDCSSKKLT-AIPSNI-PADTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLND 70 (270)
T ss_dssp CCBGG-----GTCSBEEET-TTTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCS
T ss_pred ccCCC-----CCCCCEeCC-CCCEEEccCCCCC-ccCCCC-CCCCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCC
Confidence 67888 355554322 2455666531110 111111 146899999887432 12122235678999999999
Q ss_pred CCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhc
Q 010572 235 CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 314 (507)
Q Consensus 235 ~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~ 314 (507)
|.++.-... + +. ....++.|+++.+.+.+. + ...+..+++|++|+|++|.+....... .
T Consensus 71 n~l~~i~~~-~---~~----~l~~L~~L~l~~n~l~~~-----~---~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~ 129 (270)
T 2o6q_A 71 NKLQTLPAG-I---FK----ELKNLETLWVTDNKLQAL-----P---IGVFDQLVNLAELRLDRNQLKSLPPRV-----F 129 (270)
T ss_dssp SCCSCCCTT-T---TS----SCTTCCEEECCSSCCCCC-----C---TTTTTTCSSCCEEECCSSCCCCCCTTT-----T
T ss_pred CccCeeChh-h---hc----CCCCCCEEECCCCcCCcC-----C---HhHcccccCCCEEECCCCccCeeCHHH-----h
Confidence 988632111 0 01 123578888887765432 1 124577899999999999998865432 2
Q ss_pred cCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHH
Q 010572 315 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQ 394 (507)
Q Consensus 315 ~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~ 394 (507)
...++|++|+|++|.|++.... .+... .+|++|+|++|.|+....
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l-----------------------~~L~~L~L~~n~l~~~~~---- 174 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKG--------VFDKL-----------------------TSLKELRLYNNQLKRVPE---- 174 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--------TTTTC-----------------------TTCCEEECCSSCCSCCCT----
T ss_pred CcCcCCCEEECCCCcCCccCHh--------HccCC-----------------------cccceeEecCCcCcEeCh----
Confidence 4569999999999999853211 11111 568899999999876442
Q ss_pred HhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 395 DGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 395 ~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
.++....+|++|+|++|.++.... .++...++|+.|+|++|++.-
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCCCeeC
Confidence 234456789999999999875433 234456789999999999864
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=122.57 Aligned_cols=180 Identities=17% Similarity=0.064 Sum_probs=102.1
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|++....-.+ + ++....+|++|+++++.... + + ++++++|++|+|++|.+++-. +..
T Consensus 65 ~L~~L~Ls~n~l~~-~-~~~~l~~L~~L~Ls~N~l~~----~-~--~~~l~~L~~L~L~~N~l~~l~-------~~~--- 125 (457)
T 3bz5_A 65 GLTKLICTSNNITT-L-DLSQNTNLTYLACDSNKLTN----L-D--VTPLTKLTYLNCDTNKLTKLD-------VSQ--- 125 (457)
T ss_dssp TCSEEECCSSCCSC-C-CCTTCTTCSEEECCSSCCSC----C-C--CTTCTTCCEEECCSSCCSCCC-------CTT---
T ss_pred CCCEEEccCCcCCe-E-ccccCCCCCEEECcCCCCce----e-e--cCCCCcCCEEECCCCcCCeec-------CCC---
Confidence 46677776421111 1 22334567777777764322 1 1 345677888888887776521 111
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
...++.|+++.+.+.+. -+..+++|++|++++|. ++... ....++|++|+|++|.|++.
T Consensus 126 -l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 126 -NPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp -CTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEECCSSCCCCC
T ss_pred -CCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCcccccc--------cccCCcCCEEECCCCcccee
Confidence 13466777666654331 14566778888888874 33321 13457788888888877751
Q ss_pred ccccccCCchhhcccCCCcCccccccch-hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 334 l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
.+..+++|+.|.+.++. ... .+. +.|++|+|++|+++... +....+|++|++++
T Consensus 186 -----------~l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip-------~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 186 -----------DVSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID-------VTPLTQLTYFDCSV 242 (457)
T ss_dssp -----------CCTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCS
T ss_pred -----------ccccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccccC-------ccccCCCCEEEeeC
Confidence 13334455555555543 110 122 67788888888776532 34456678888888
Q ss_pred CCCChH
Q 010572 411 NRGGVE 416 (507)
Q Consensus 411 N~i~~~ 416 (507)
|.++..
T Consensus 243 N~l~~~ 248 (457)
T 3bz5_A 243 NPLTEL 248 (457)
T ss_dssp SCCSCC
T ss_pred CcCCCc
Confidence 877653
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=110.97 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=127.3
Q ss_pred cCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcch
Q 010572 199 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 278 (507)
Q Consensus 199 L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~ 278 (507)
.++++++++... .+-.. -..++++|+|++|.+++.....+ . ....++.|+++.+.+.+..
T Consensus 16 ~~~l~~~~~~l~----~~p~~---~~~~l~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~L~~n~l~~~~----- 75 (251)
T 3m19_A 16 KKEVDCQGKSLD----SVPSG---IPADTEKLDLQSTGLATLSDATF----R----GLTKLTWLNLDYNQLQTLS----- 75 (251)
T ss_dssp GTEEECTTCCCS----SCCSC---CCTTCCEEECTTSCCCCCCTTTT----T----TCTTCCEEECTTSCCCCCC-----
T ss_pred CeEEecCCCCcc----ccCCC---CCCCCCEEEccCCCcCccCHhHh----c----CcccCCEEECCCCcCCccC-----
Confidence 366777766322 11111 12579999999999876433221 1 1245888888877754321
Q ss_pred HHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccc
Q 010572 279 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358 (507)
Q Consensus 279 ~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll 358 (507)
...+..+++|++|+|++|++....... ....++|++|+|++|.|++.... .+...
T Consensus 76 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l--------- 130 (251)
T 3m19_A 76 ---AGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLPSG--------VFDRL--------- 130 (251)
T ss_dssp ---TTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTT--------TTTTC---------
T ss_pred ---HhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcChh--------HhccC---------
Confidence 234677899999999999998755432 24568999999999999853221 11111
Q ss_pred cchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC
Q 010572 359 NLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 359 ~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
.+|++|+|++|+|+.... .++....+|++|+|++|.++.... ..+...++|+.|+|++
T Consensus 131 --------------~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 131 --------------TKLKELRLNTNQLQSIPA----GAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLFG 188 (251)
T ss_dssp --------------TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred --------------CcccEEECcCCcCCccCH----HHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeC
Confidence 568999999999985432 234556789999999999886443 3445567899999999
Q ss_pred CCCChh--HHHHHHHHHhcC
Q 010572 439 NLMPLE--SLTIICSALKVA 456 (507)
Q Consensus 439 N~l~~~--g~~~L~~aL~~~ 456 (507)
|.+..+ ....+..-++.+
T Consensus 189 N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 189 NQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CCBCTTSTTHHHHHHHHHHS
T ss_pred CceeCCccccHHHHHHHHhc
Confidence 999765 344455555544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-10 Score=122.77 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
++|++|+|++|.|+... ....+|++|+|++|.|+.-. . ..++|+.|+|++|.|..- ...
T Consensus 221 ~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp-----~---~~~~L~~L~Ls~N~L~~l-----p~~ 279 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLP-----M---LPSGLLSLSVYRNQLTRL-----PES 279 (622)
T ss_dssp TTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSSCCCSC-----CGG
T ss_pred CCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCC-----c---ccccCcEEeCCCCCCCcC-----CHH
Confidence 67999999999987632 22367999999999987421 1 346799999999999832 123
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
+... .+|+.|+|++|.+ .......+..+..
T Consensus 280 l~~l-~~L~~L~L~~N~l--~~~~~~~l~~L~~ 309 (622)
T 3g06_A 280 LIHL-SSETTVNLEGNPL--SERTLQALREITS 309 (622)
T ss_dssp GGGS-CTTCEEECCSCCC--CHHHHHHHHHHHH
T ss_pred Hhhc-cccCEEEecCCCC--CCcCHHHHHhccc
Confidence 4433 6799999999996 5555555555554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=114.05 Aligned_cols=193 Identities=15% Similarity=0.070 Sum_probs=108.5
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++... .+.+ +..+++|++|+|++|.+++-. .+.. ...++.|.++.+.+.+.
T Consensus 40 l~~L~~L~l~~~~i~-~~~~-----l~~l~~L~~L~l~~n~l~~~~------~l~~----l~~L~~L~L~~n~l~~~--- 100 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQG-----IQYLPNVRYLALGGNKLHDIS------ALKE----LTNLTYLILTGNQLQSL--- 100 (272)
T ss_dssp HTTCCEEECTTSCCC-CCTT-----GGGCTTCCEEECTTSCCCCCG------GGTT----CTTCCEEECTTSCCCCC---
T ss_pred ccceeeeeeCCCCcc-cccc-----cccCCCCcEEECCCCCCCCch------hhcC----CCCCCEEECCCCccCcc---
Confidence 455666776655321 1111 234567777777777665411 1111 12355555554443221
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+ ...+..+++|++|+|++|++....... ....++|++|+|++|.|++..+
T Consensus 101 --~---~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~-------------------- 150 (272)
T 3rfs_A 101 --P---NGVFDKLTNLKELVLVENQLQSLPDGV-----FDKLTNLTYLNLAHNQLQSLPK-------------------- 150 (272)
T ss_dssp --C---TTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------------------
T ss_pred --C---hhHhcCCcCCCEEECCCCcCCccCHHH-----hccCCCCCEEECCCCccCccCH--------------------
Confidence 0 112344555666666666655433211 1233556666666665553211
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
..+. .+|++|+|++|.++.... ..+....+|++|+|++|.++.... ..+...++|+.
T Consensus 151 -------------~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~ 209 (272)
T 3rfs_A 151 -------------GVFDKLTNLTELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQY 209 (272)
T ss_dssp -------------TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCE
T ss_pred -------------HHhccCccCCEEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCE
Confidence 1111 678999999999985432 224456789999999999886433 34455688999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|++++|.+... ...|+.|++..|.+
T Consensus 210 L~l~~N~~~~~------------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 210 IWLHDNPWDCT------------CPGIRYLSEWINKH 234 (272)
T ss_dssp EECCSSCBCCC------------TTTTHHHHHHHHHT
T ss_pred EEccCCCcccc------------CcHHHHHHHHHHhC
Confidence 99999998632 13577777777765
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-10 Score=107.10 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=86.4
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
+..+++|++|+|++|.+.+-. .+ ...++|++|+|++|.|++.... .++..
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~------~l-~~l~~L~~L~l~~n~l~~~~~~--------~l~~l--------------- 111 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN------PI-SGLSNLERLRIMGKDVTSDKIP--------NLSGL--------------- 111 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG------GG-TTCTTCCEEEEECTTCBGGGSC--------CCTTC---------------
T ss_pred HhcCCCCCEEEccCCCCCcch------hh-hcCCCCCEEEeECCccCcccCh--------hhcCC---------------
Confidence 345677888888888776542 12 3457888888888888752221 11111
Q ss_pred HHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 365 ~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
++|++|+|++|.+++.+... +....+|++|+|++|. +++.. .+...++|+.|++++|.+++
T Consensus 112 --------~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 112 --------TSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp --------TTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCCC
T ss_pred --------CCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCcC
Confidence 56788888888888755443 3456788899998887 76641 34455788999999998876
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
-. .+... .+|+.|++++|++
T Consensus 174 ~~------~l~~l-~~L~~L~l~~N~i 193 (197)
T 4ezg_A 174 YR------GIEDF-PKLNQLYAFSQTI 193 (197)
T ss_dssp CT------TGGGC-SSCCEEEECBC--
T ss_pred hH------HhccC-CCCCEEEeeCccc
Confidence 32 33333 5789999998886
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=108.13 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
.+++|++|++++|.+.+-. ++ ...++|++|+|++|.++..- .+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~------~l-~~l~~L~~L~l~~n~~~~~~----------~l~~------------------ 86 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT------GI-EYAHNIKDLTINNIHATNYN----------PISG------------------ 86 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT------TG-GGCTTCSEEEEESCCCSCCG----------GGTT------------------
T ss_pred hcCCccEEeccCCCccChH------HH-hcCCCCCEEEccCCCCCcch----------hhhc------------------
Confidence 3468999999999998632 12 34589999999999776410 1100
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC-CChhH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL-MPLES 445 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g 445 (507)
-+.|++|+|++|.++..+... +....+|++|+|++|.+++.++..++ ..++|++|++++|. +++-.
T Consensus 87 -----l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 87 -----LSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKIN----TLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp -----CTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHT----TCSSCCEEECCSCTBCCCCG
T ss_pred -----CCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHh----hCCCCCEEEccCCCCccccH
Confidence 157899999999998654332 44567899999999999987777665 45789999999998 87642
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+... .+|+.|+|++|.+
T Consensus 154 ------~l~~l-~~L~~L~l~~n~i 171 (197)
T 4ezg_A 154 ------PLKTL-PELKSLNIQFDGV 171 (197)
T ss_dssp ------GGGGC-SSCCEEECTTBCC
T ss_pred ------hhcCC-CCCCEEECCCCCC
Confidence 34443 6899999999997
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=123.36 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=58.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|+.|+|++|.|+.. ..+....+|++|+|++|.+++... +...++|+.|+|++|.|++- ..
T Consensus 131 ~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~~l------~~ 192 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RA 192 (605)
T ss_dssp TTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GG
T ss_pred CccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcCCCCCCC------hH
Confidence 6788888888888764 345667788889998888876543 44557888899998888763 12
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 193 l~~-l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAG-LKNLDVLELFSQEC 209 (605)
T ss_dssp GTT-CTTCSEEECCSEEE
T ss_pred Hcc-CCCCCEEEccCCcC
Confidence 443 35788888888876
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=112.78 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=83.1
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
+..+++|++|+|++|++.+... + ...++|++|+|++|.|++.-.
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~------l-~~l~~L~~L~L~~N~l~~l~~----------------------------- 102 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP------L-KDLTKLEELSVNRNRLKNLNG----------------------------- 102 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG------G-TTCSSCCEEECCSSCCSCCTT-----------------------------
T ss_pred HhhCCCCCEEECCCCccCCChh------h-ccCCCCCEEECCCCccCCcCc-----------------------------
Confidence 4555666666666666665433 1 234666666666666654100
Q ss_pred HHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 365 ~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
+ ...+|++|+|++|.|+.. ..+....+|++|+|++|.+++.. .+...++|+.|+|++|.|.+.
T Consensus 103 --~---~~~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 103 --I---PSACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp --C---CCSSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCCCBC
T ss_pred --c---ccCcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcCcch
Confidence 0 015678888888888764 23556778899999999887642 344557889999999988865
Q ss_pred HHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 445 SLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 445 g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+.. ..+|+.|+|++|.+
T Consensus 166 ------~~l~~-l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 ------GGLTR-LKKVNWIDLTGQKC 184 (263)
T ss_dssp ------TTSTT-CCCCCEEEEEEEEE
T ss_pred ------HHhcc-CCCCCEEeCCCCcc
Confidence 23443 35788999988886
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-11 Score=130.55 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=126.2
Q ss_pred CCCCccEEEeecCCCChhH--HHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC
Q 010572 223 NSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~--~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~ 300 (507)
.+++|++|++++|.++... ...+ .. ...++.|+++.+.+.+ ++ ..+..+++|++|+|++|.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~-~~-------~~~L~~L~l~~n~l~~-----~~----~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSD-FG-------TTSLKYLDLSFNGVIT-----MS----SNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHH-HT-------CSCCCEEECCSCSEEE-----EE----EEEETCTTCCEEECTTSE
T ss_pred cCCCCCEEeCcCCccCccccccccc-cc-------cCccCEEECCCCcccc-----cc----ccccccCCCCEEEccCCc
Confidence 4567888888888776432 1111 11 1346777777665432 11 115678999999999999
Q ss_pred CCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEE
Q 010572 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVL 378 (507)
Q Consensus 301 L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L 378 (507)
+.+..... .....++|++|+|++|.+++..+. .+...++|+.|.+.++.-..+.++..+. ++|++|
T Consensus 408 l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 408 LKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNG--------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp EESCTTSC----TTTTCTTCCEEECTTSCCEECCTT--------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred cccccchh----hhhcCCCCCEEeCcCCcccccchh--------hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 87754311 124568999999999999864432 5566677888877777511123334444 889999
Q ss_pred EeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 379 ~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
+|++|.++..+. ..+....+|++|+|++|.++.... ..+...++|+.|++++|++..+
T Consensus 476 ~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 476 DLSQCQLEQLSP----TAFNSLSSLQVLNMASNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp ECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCccccCCh----hhhhcccCCCEEeCCCCcCCCCCH----HHhhcccCCcEEEecCCcccCC
Confidence 999999986532 234556789999999999987543 2445668899999999999753
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-10 Score=126.70 Aligned_cols=95 Identities=16% Similarity=0.002 Sum_probs=53.8
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHh-hCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSK-LMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~-~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
++|++|+|++|.|+.... +. .+|++|+|++|.|+.-.. +.. +....+.|+.|+|++|.|+. |..
T Consensus 160 ~~L~~L~Ls~N~L~~lp~------l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~ 224 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE------LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPE 224 (571)
T ss_dssp TTCCEEECCSSCCSCCCC------CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCG
T ss_pred CCcCEEECCCCCCCCcch------hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCH
Confidence 567888888888765332 22 678888888887763211 111 11111223888888888873 112
Q ss_pred HHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 452 ALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
.+.. ..+|+.|+|++|.+ ....-..+..+..
T Consensus 225 ~l~~-l~~L~~L~L~~N~l--~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 225 NILS-LDPTCTIILEDNPL--SSRIRESLSQQTA 255 (571)
T ss_dssp GGGG-SCTTEEEECCSSSC--CHHHHHHHHHHHH
T ss_pred HHhc-CCCCCEEEeeCCcC--CCcCHHHHHHhhc
Confidence 2322 35688888888875 4444555555444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.4e-10 Score=111.32 Aligned_cols=190 Identities=13% Similarity=-0.005 Sum_probs=105.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..++.|+++++.... +.+..+.++.+|++|+|++|.++.-... .....++.|+++.+.+..
T Consensus 31 ~~l~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~l~~L~~L~Ls~N~l~~----- 91 (290)
T 1p9a_G 31 KDTTILHLSENLLYT----FSLATLMPYTRLTQLNLDRAELTKLQVD----------GTLPVLGTLDLSHNQLQS----- 91 (290)
T ss_dssp TTCCEEECTTSCCSE----EEGGGGTTCTTCCEEECTTSCCCEEECC----------SCCTTCCEEECCSSCCSS-----
T ss_pred CCCCEEEcCCCcCCc----cCHHHhhcCCCCCEEECCCCccCcccCC----------CCCCcCCEEECCCCcCCc-----
Confidence 356777777664321 1111234556777777777766531110 001235555555444321
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+ ...+..+++|++|+|++|+|+...... +...++|++|+|++|.|++..+
T Consensus 92 l----~~~~~~l~~L~~L~l~~N~l~~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~--------------------- 141 (290)
T 1p9a_G 92 L----PLLGQTLPALTVLDVSFNRLTSLPLGA-----LRGLGELQELYLKGNELKTLPP--------------------- 141 (290)
T ss_dssp C----CCCTTTCTTCCEEECCSSCCCCCCSST-----TTTCTTCCEEECTTSCCCCCCT---------------------
T ss_pred C----chhhccCCCCCEEECCCCcCcccCHHH-----HcCCCCCCEEECCCCCCCccCh---------------------
Confidence 1 112344555666666666655432211 1233556666666666553211
Q ss_pred cccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEE
Q 010572 357 LLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEV 434 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L 434 (507)
..+. .+|++|+|++|+|+.... +++....+|++|+|++|.++. +...+...++|+.|
T Consensus 142 ------------~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 142 ------------GLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFA 200 (290)
T ss_dssp ------------TTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEE
T ss_pred ------------hhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeE
Confidence 1111 678999999999975321 233456789999999999873 22334455689999
Q ss_pred EccCCCCCh-hHHHHHHHHHhcC
Q 010572 435 NAGYNLMPL-ESLTIICSALKVA 456 (507)
Q Consensus 435 ~Ls~N~l~~-~g~~~L~~aL~~~ 456 (507)
+|++|++.- -+...+..-++++
T Consensus 201 ~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 201 FLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp ECCSCCBCCSGGGHHHHHHHHHT
T ss_pred EeCCCCccCcCccHHHHHHHHhC
Confidence 999999963 3344455556554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-09 Score=107.66 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|+|++|.++.. ..+....+|++|+|++|.++.. ..+...++|++|++++|.|++...
T Consensus 112 ~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------ 173 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------ 173 (291)
T ss_dssp TTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG------
T ss_pred CCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh------
Confidence 6799999999999874 2456678899999999999874 345566889999999999987542
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 174 l~~-l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 174 LAG-LTKLQNLYLSKNHI 190 (291)
T ss_dssp GTT-CTTCCEEECCSSCC
T ss_pred hcC-CCccCEEECCCCcC
Confidence 333 36899999999997
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.7e-10 Score=122.20 Aligned_cols=172 Identities=19% Similarity=0.094 Sum_probs=102.9
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|+.|+++++.... +. . +..+++|++|+|++|.+++... +.. ...++.|+++.+.+.+.
T Consensus 42 L~~L~~L~l~~n~i~~-l~----~-l~~l~~L~~L~Ls~N~l~~~~~------l~~----l~~L~~L~Ls~N~l~~l--- 102 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ----G-IQYLPNVTKLFLNGNKLTDIKP------LTN----LKNLGWLFLDENKIKDL--- 102 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT----T-GGGCTTCCEEECTTSCCCCCGG------GGG----CTTCCEEECCSSCCCCC---
T ss_pred CCCCCEEECcCCCCCC-Ch----H-HccCCCCCEEEeeCCCCCCChh------hcc----CCCCCEEECcCCCCCCC---
Confidence 4556777776653211 11 1 2456788888888887765332 111 13466666666654321
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
..+..+++|++|+|++|.|.+.. .+ ...++|+.|+|++|.|++. . .+..+
T Consensus 103 -------~~l~~l~~L~~L~Ls~N~l~~l~------~l-~~l~~L~~L~Ls~N~l~~l-~---------~l~~l------ 152 (605)
T 1m9s_A 103 -------SSLKDLKKLKSLSLEHNGISDIN------GL-VHLPQLESLYLGNNKITDI-T---------VLSRL------ 152 (605)
T ss_dssp -------TTSTTCTTCCEEECTTSCCCCCG------GG-GGCTTCSEEECCSSCCCCC-G---------GGGSC------
T ss_pred -------hhhccCCCCCEEEecCCCCCCCc------cc-cCCCccCEEECCCCccCCc-h---------hhccc------
Confidence 13566777888888888877632 22 3457788888888877652 1 11111
Q ss_pred ccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 356 RLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
++|++|+|++|.|..... +....+|++|+|++|.|++. ..+...++|+.|+
T Consensus 153 -----------------~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 153 -----------------TKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLE 203 (605)
T ss_dssp -----------------TTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEE
T ss_pred -----------------CCCCEEECcCCcCCCchh------hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEE
Confidence 457777777777765432 44556777778877777653 2344556777788
Q ss_pred ccCCCCChhH
Q 010572 436 AGYNLMPLES 445 (507)
Q Consensus 436 Ls~N~l~~~g 445 (507)
|++|.+...+
T Consensus 204 L~~N~l~~~p 213 (605)
T 1m9s_A 204 LFSQECLNKP 213 (605)
T ss_dssp CCSEEEECCC
T ss_pred ccCCcCcCCc
Confidence 8777776543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-09 Score=115.39 Aligned_cols=213 Identities=18% Similarity=0.041 Sum_probs=132.3
Q ss_pred ceeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 174 HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.+++.|+|.+..-. .+.. ...+|++|++++|.... +-..+++|++|+|++|.++.-..
T Consensus 61 ~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~~--------lp~~l~~L~~L~Ls~N~l~~l~~----------- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLTS--------LPVLPPGLLELSIFSNPLTHLPA----------- 118 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCSC--------CCCCCTTCCEEEECSCCCCCCCC-----------
T ss_pred CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCCc--------CCCCCCCCCEEECcCCcCCCCCC-----------
Confidence 35677777642111 1111 23567888887774321 11144678888888887764100
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
....++.|.++.|.+.. ++. ..++|++|+|++|++..-. ....+|+.|+|++|.|++.
T Consensus 119 -~l~~L~~L~L~~N~l~~-----lp~-------~l~~L~~L~Ls~N~l~~l~---------~~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTS-----LPV-------LPPGLQELSVSDNQLASLP---------ALPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-----CCC-------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSCC
T ss_pred -CCCCcCEEECCCCCCCc-----CCC-------CCCCCCEEECcCCcCCCcC---------CccCCCCEEECCCCCCCCC
Confidence 12346777777665432 111 1377888888888886532 1236788888888888751
Q ss_pred ccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCC
Q 010572 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRG 413 (507)
Q Consensus 334 l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i 413 (507)
- ....+|+.|.+.+|. +. .++. ..++|+.|++++|.|+... ....+|++|+|++|.|
T Consensus 177 ~------------~~~~~L~~L~Ls~N~-l~-~l~~-~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 177 P------------MLPSGLQELSVSDNQ-LA-SLPT-LPSELYKLWAYNNRLTSLP--------ALPSGLKELIVSGNRL 233 (622)
T ss_dssp C------------CCCTTCCEEECCSSC-CS-CCCC-CCTTCCEEECCSSCCSSCC--------CCCTTCCEEECCSSCC
T ss_pred c------------ccCCCCcEEECCCCC-CC-CCCC-ccchhhEEECcCCcccccC--------CCCCCCCEEEccCCcc
Confidence 1 123456666666654 10 1111 1278999999999998532 1136799999999998
Q ss_pred ChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 414 GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 414 ~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+.-. ...++|+.|+|++|.|+.-. ....+|+.|+|++|.+
T Consensus 234 ~~lp--------~~l~~L~~L~Ls~N~L~~lp---------~~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 234 TSLP--------VLPSELKELMVSGNRLTSLP---------MLPSGLLSLSVYRNQL 273 (622)
T ss_dssp SCCC--------CCCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCC
T ss_pred CcCC--------CCCCcCcEEECCCCCCCcCC---------cccccCcEEeCCCCCC
Confidence 7521 23467999999999998421 1236899999999998
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-09 Score=105.32 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++|++|+|++|.+....... +...++|++|+|++|.|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV-----FDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEEcCCCccCccCHHH-----hhCccCCcEEECCCCCCCC
Confidence 56777777777776643321 1334677777777777753
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-09 Score=110.93 Aligned_cols=135 Identities=18% Similarity=0.078 Sum_probs=73.0
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHh
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK 369 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~ 369 (507)
+|++|+|++|++..-. .+ ...++|++|++++|.|++. +. . ..+|+.|.+.++. .. .++.
T Consensus 174 ~L~~L~L~~n~l~~l~------~~-~~l~~L~~L~l~~N~l~~l-~~--------~---~~~L~~L~l~~n~-l~-~lp~ 232 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP------EL-QNLPFLTAIYADNNSLKKL-PD--------L---PLSLESIVAGNNI-LE-ELPE 232 (454)
T ss_dssp TCCEEECCSSCCSSCC------CC-TTCTTCCEEECCSSCCSSC-CC--------C---CTTCCEEECCSSC-CS-SCCC
T ss_pred cccEEECcCCcCCcCc------cc-cCCCCCCEEECCCCcCCcC-CC--------C---cCcccEEECcCCc-CC-cccc
Confidence 5666666666665421 11 3346666666666666641 10 0 1235555555543 11 2222
Q ss_pred hhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 370 FFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 370 ~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.-. +.|++|++++|.++... . ...+|++|++++|.++.- .. ..++|+.|++++|.++.-.
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~-----~---~~~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~ls~N~l~~l~--- 293 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLP-----D---LPPSLEALNVRDNYLTDL-----PE---LPQSLTFLDVSENIFSGLS--- 293 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCC-----S---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSEES---
T ss_pred cCCCCCCCEEECCCCcCCccc-----c---cccccCEEECCCCccccc-----Cc---ccCcCCEEECcCCccCccc---
Confidence 112 67888888888776421 0 125688888888877641 11 1246888888888887511
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.-..+|+.|++++|.+
T Consensus 294 ------~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 294 ------ELPPNLYYLNASSNEI 309 (454)
T ss_dssp ------CCCTTCCEEECCSSCC
T ss_pred ------CcCCcCCEEECcCCcC
Confidence 0013566666666654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-10 Score=110.65 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=47.4
Q ss_pred CCCc-EEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCC-CCccEEEccCCCCChhHHHHH
Q 010572 373 TSVQ-VLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLA-PELVEVNAGYNLMPLESLTII 449 (507)
Q Consensus 373 ~~L~-~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n-~~L~~L~Ls~N~l~~~g~~~L 449 (507)
..|+ +|+|++|+++..... +.. ..+|++|+|++|+ ++.-... ++... ++|+.|++++|.|+.-...
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~----~~~-~~~L~~L~L~~n~~l~~i~~~----~~~~l~~~L~~L~l~~N~l~~l~~~-- 223 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGY----AFN-GTKLDAVYLNKNKYLTVIDKD----AFGGVYSGPSLLDVSQTSVTALPSK-- 223 (239)
T ss_dssp BSSEEEEECCSCCCCEECTT----TTT-TCEEEEEECTTCTTCCEECTT----TTTTCSBCCSEEECTTCCCCCCCCT--
T ss_pred hcceeEEEcCCCCCcccCHh----hcC-CCCCCEEEcCCCCCcccCCHH----HhhccccCCcEEECCCCccccCChh--
Confidence 5677 788888877654321 112 2568888888884 7643222 23334 6788888888887642211
Q ss_pred HHHHhcCCCCccEEEecCCC
Q 010572 450 CSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 450 ~~aL~~~~~~L~~LdL~~N~ 469 (507)
.-.+|+.|++.++.
T Consensus 224 ------~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 ------GLEHLKELIARNTW 237 (239)
T ss_dssp ------TCTTCSEEECTTC-
T ss_pred ------HhccCceeeccCcc
Confidence 12467888876653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-09 Score=109.40 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=55.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..|++|+++++.... + +. +.++++|++|++++|.+++ ++. . ...++.|+++.+.+.+
T Consensus 131 ~~L~~L~L~~n~l~~-l----p~-~~~l~~L~~L~l~~N~l~~--lp~---------~-~~~L~~L~L~~n~l~~----- 187 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-L----PE-LQNSSFLKIIDVDNNSLKK--LPD---------L-PPSLEFIAAGNNQLEE----- 187 (454)
T ss_dssp TTCCEEECCSSCCSS-C----CC-CTTCTTCCEEECCSSCCSC--CCC---------C-CTTCCEEECCSSCCSS-----
T ss_pred CCCCEEECcCCCCCC-C----cc-cCCCCCCCEEECCCCcCcc--cCC---------C-cccccEEECcCCcCCc-----
Confidence 467788877764321 1 12 3466778888888887763 100 0 1246666666655432
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
++ .+..+++|++|++++|.+.+-. ....+|++|+|++|.++
T Consensus 188 l~-----~~~~l~~L~~L~l~~N~l~~l~---------~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 188 LP-----ELQNLPFLTAIYADNNSLKKLP---------DLPLSLESIVAGNNILE 228 (454)
T ss_dssp CC-----CCTTCTTCCEEECCSSCCSSCC---------CCCTTCCEEECCSSCCS
T ss_pred Cc-----cccCCCCCCEEECCCCcCCcCC---------CCcCcccEEECcCCcCC
Confidence 11 1455667777777777765411 11246666666666665
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-09 Score=102.61 Aligned_cols=149 Identities=14% Similarity=0.049 Sum_probs=110.4
Q ss_pred CCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCc
Q 010572 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (507)
Q Consensus 224 ~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~ 303 (507)
+.+|++|++++|.++.-. .+.. ...++.|+++.+.+.+ ++. +..+++|++|+|++|++.+
T Consensus 40 l~~L~~L~l~~n~i~~l~------~l~~----l~~L~~L~L~~N~i~~-----~~~-----l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA------GMQF----FTNLKELHLSHNQISD-----LSP-----LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTTCSEEECTTSCCCCCT------TGGG----CTTCCEEECCSSCCCC-----CGG-----GTTCSSCCEEECCSSCCSC
T ss_pred cCcCcEEECcCCCcccch------HHhh----CCCCCEEECCCCccCC-----Chh-----hccCCCCCEEECCCCccCC
Confidence 378999999999987521 2221 2458888888776543 221 6789999999999999987
Q ss_pred hHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccC
Q 010572 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAI 383 (507)
Q Consensus 304 ~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n 383 (507)
-.. + .. .+|++|+|++|.|++. . .+... ++|++|+|++|
T Consensus 100 l~~------~-~~-~~L~~L~L~~N~l~~~-~---------~l~~l-----------------------~~L~~L~Ls~N 138 (263)
T 1xeu_A 100 LNG------I-PS-ACLSRLFLDNNELRDT-D---------SLIHL-----------------------KNLEILSIRNN 138 (263)
T ss_dssp CTT------C-CC-SSCCEEECCSSCCSBS-G---------GGTTC-----------------------TTCCEEECTTS
T ss_pred cCc------c-cc-CcccEEEccCCccCCC-h---------hhcCc-----------------------ccccEEECCCC
Confidence 432 2 22 8999999999999852 0 11111 56889999999
Q ss_pred CCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 384 GLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 384 ~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
+|++.. .+....+|++|+|++|.+++. ..+...++|+.|++++|.+...+
T Consensus 139 ~i~~~~------~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 139 KLKSIV------MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCBCG------GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCCCh------HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCCc
Confidence 998752 456678899999999999876 45667788999999999987554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-09 Score=112.46 Aligned_cols=152 Identities=19% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
.+++|++|+|++|+|....... + ...++|++|+|++|.|+..... .+...
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~----~-~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l----------------- 111 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEA----F-VPVPNLRYLDLSSNHLHTLDEF--------LFSDL----------------- 111 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTT----T-TTCTTCCEEECCSSCCCEECTT--------TTTTC-----------------
T ss_pred cccccCEEECCCCcCCccChhh----c-cCCCCCCEEECCCCcCCcCCHH--------HhCCC-----------------
Confidence 4566666666666665543221 1 2345666666666666531110 11111
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
.+|++|+|++|.|+... ..++....+|++|+|++|.|+.-....+. .+...++|+.|+|++|.|..-..
T Consensus 112 ------~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 112 ------QALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp ------TTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCSSCCCCCCH
T ss_pred ------cCCCEEECCCCcccEEC----HHHhCCcccCCEEECCCCcCCeeCHHHhc-CcccCCcCCEEECCCCCCCccCH
Confidence 67888999999987543 22345567899999999998763322221 01335789999999999986443
Q ss_pred HHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
..+.. +. .-.|+.|+|.+|.|.-.-.....+..
T Consensus 181 ~~~~~-l~--~~~l~~l~l~~N~~~C~C~l~~~~~~ 213 (361)
T 2xot_A 181 TDLQK-LP--AWVKNGLYLHNNPLECDCKLYQLFSH 213 (361)
T ss_dssp HHHHH-SC--HHHHTTEECCSSCEECCHHHHHHHHH
T ss_pred HHhhh-cc--HhhcceEEecCCCccCCcCcHHHHHH
Confidence 33321 11 01257899999987333333333333
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.84 E-value=9e-10 Score=103.51 Aligned_cols=133 Identities=19% Similarity=0.138 Sum_probs=70.9
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|++....... ....++|++|+|++|.|++.... .+...
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l------------------- 75 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGV-----FDELTSLTQLYLGGNKLQSLPNG--------VFNKL------------------- 75 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTT--------TTTTC-------------------
T ss_pred CCCcEEEcCCCccCcCChhh-----hcccccCcEEECCCCccCccChh--------hcCCC-------------------
Confidence 46777888888776544321 23457778888887777642111 11111
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.++.... .++...++|++|++++|.|+....
T Consensus 76 ----~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~-- 141 (208)
T 2o6s_A 76 ----TSLTYLNLSTNQLQSLPN----GVFDKLTQLKELALNTNQLQSLPD----GVFDKLTQLKDLRLYQNQLKSVPD-- 141 (208)
T ss_dssp ----TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred ----CCcCEEECCCCcCCccCH----hHhcCccCCCEEEcCCCcCcccCH----hHhccCCcCCEEECCCCccceeCH--
Confidence 445666666666653221 123334556666666666654221 123334566667776666653221
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.+
T Consensus 142 --~~~~~-l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 142 --GVFDR-LTSLQYIWLHDNPW 160 (208)
T ss_dssp --TTTTT-CTTCCEEECCSCCB
T ss_pred --HHhcc-CCCccEEEecCCCe
Confidence 11222 24566777776665
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.8e-10 Score=120.28 Aligned_cols=178 Identities=17% Similarity=0.119 Sum_probs=111.1
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
..+++|+.++++.|+........ ......+++.++++.|.+++.... .+....+++.|.+.++.....
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~ls~n~l~~~~~~--------~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNG--------IFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCEEECTTSCCEECCTT--------TTTTCTTCCEEECTTCEEGGG
T ss_pred cccccccchhhhhcccccccccc----cccccccccccccccccccccccc--------ccccchhhhhhhhhhcccccc
Confidence 44566777777766654432211 123346777888888877643221 344445566666665542222
Q ss_pred HHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 366 SLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 366 ~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
.++..+. .+|++|+|++|+|+... ..++....+|++|+|++|+|+.-... .+...++|++|+|++|.|..
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDTF----PYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCBCCCG----GGTTCTTCCEEECTTSCCCB
T ss_pred cCchhhhhccccCEEECCCCccCCcC----hHHHcCCCCCCEEECCCCcCCCCChh----HHhCCCCCCEEECCCCcCCC
Confidence 2233343 78999999999998643 23345567899999999998764333 34455789999999999975
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
.... ++.....+|+.|+|++|+|.=.-+.+....-+..+.
T Consensus 557 ~~~~----~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~ 596 (635)
T 4g8a_A 557 SKKQ----ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 596 (635)
T ss_dssp CCSS----CTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTT
T ss_pred CCHH----HHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCC
Confidence 4322 233222579999999999843444444444444443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-09 Score=118.65 Aligned_cols=192 Identities=14% Similarity=0.060 Sum_probs=97.5
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|+|.+..-.+ +..-. ..+|++|++++|... .+ + ..+++|++|+|++|.+++ .+. + .
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~i----p---~~l~~L~~L~Ls~N~l~~-ip~-l----~---- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SL----P---ELPASLEYLDACDNRLST-LPE-L----P---- 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CC----C---CCCTTCCEEECCSSCCSC-CCC-C----C----
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-cc----c---cccCCCCEEEccCCCCCC-cch-h----h----
Confidence 46667775421111 21101 145777777766432 11 1 234677777777777654 111 1 0
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l 334 (507)
..++.|+++.|.+.. ++. .+++|++|+|++|.|+.-.. ..++|++|+|++|.|++ +
T Consensus 120 --~~L~~L~Ls~N~l~~-----lp~-------~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 120 --ASLKHLDVDNNQLTM-----LPE-------LPALLEYINADNNQLTMLPE---------LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp --TTCCEEECCSSCCSC-----CCC-------CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSC-C
T ss_pred --cCCCEEECCCCcCCC-----CCC-------cCccccEEeCCCCccCcCCC---------cCCCcCEEECCCCCCCC-c
Confidence 135566665555422 111 34566777777776654221 23566777777776664 1
Q ss_pred cccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhh-cCCCCCCEEeccCCCC
Q 010572 335 SKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV-TKELKLVNINISKNRG 413 (507)
Q Consensus 335 ~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL-~~n~~L~~LdLs~N~i 413 (507)
+ . +.++|+.|+|++|+|+.... +...| .....|++|+|++|.|
T Consensus 176 p---------------------------------~-l~~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 176 P---------------------------------E-LPESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp C---------------------------------C-CCTTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCC
T ss_pred c---------------------------------h-hhCCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcc
Confidence 1 1 12456777777777764332 21111 1112237777777777
Q ss_pred ChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 414 GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 414 ~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
+. +...+...++|+.|+|++|.|.......+..
T Consensus 220 ~~-----lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 220 TH-----IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-----CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ee-----cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 63 1122223466777777777777666555554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.4e-09 Score=100.26 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=114.2
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH-
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG- 368 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~- 368 (507)
+.+.++.+++.++.-.. ...++|++|+|++|.|++..+. .+....+|+.|.+.+|. + ..+.
T Consensus 20 s~~~v~c~~~~l~~ip~--------~~~~~L~~L~Ls~n~i~~~~~~--------~~~~l~~L~~L~L~~N~-l-~~i~~ 81 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA--------GIPTNAQILYLHDNQITKLEPG--------VFDSLINLKELYLGSNQ-L-GALPV 81 (229)
T ss_dssp ETTEEECTTSCCSSCCS--------CCCTTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSC-C-CCCCT
T ss_pred eCCEeEccCCCcCccCC--------CCCCCCCEEEcCCCccCccCHH--------HhhCccCCcEEECCCCC-C-CCcCh
Confidence 46778889888876432 1138899999999999974432 56666777887777765 1 1111
Q ss_pred hhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 369 KFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 369 ~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
..+. .+|++|+|++|.|+.... ..+....+|++|+|++|.|+.- ...+...++|+.|+|++|.|..-..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKELFMCCNKLTEL-----PRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCSC-----CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred hhcccCCCcCEEECCCCcCCccCh----hHhCcchhhCeEeccCCccccc-----CcccccCCCCCEEECCCCcCCccCH
Confidence 2223 789999999999985432 2344567899999999999732 2233456789999999999984321
Q ss_pred HHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
.++.. ..+|+.|+|++|.+.-.......+..+.....+.
T Consensus 153 ----~~~~~-l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~ 191 (229)
T 3e6j_A 153 ----GAFDR-LSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSI 191 (229)
T ss_dssp ----TTTTT-CTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred ----HHHhC-CCCCCEEEeeCCCccCCcchhHHHHHHHHhCccc
Confidence 22333 3689999999999843333344555555544333
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-09 Score=114.27 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=86.9
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
.+++|+|++|... .+-+.-+.++++|++|+|++|.++.-..
T Consensus 53 ~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~----------------------------------- 93 (635)
T 4g8a_A 53 STKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIED----------------------------------- 93 (635)
T ss_dssp TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECT-----------------------------------
T ss_pred CCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcCh-----------------------------------
Confidence 5788888877432 1111123466788888888886642110
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccc
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~l 357 (507)
.++..+++|++|+|++|+|..-.... +...++|++|+|++|.|++.... +++..++|+.|.+
T Consensus 94 -----~~f~~L~~L~~L~Ls~N~l~~l~~~~-----f~~L~~L~~L~Ls~N~l~~l~~~--------~~~~L~~L~~L~L 155 (635)
T 4g8a_A 94 -----GAYQSLSHLSTLILTGNPIQSLALGA-----FSGLSSLQKLVAVETNLASLENF--------PIGHLKTLKELNV 155 (635)
T ss_dssp -----TTTTTCTTCCEEECTTCCCCEECGGG-----GTTCTTCCEEECTTSCCCCSTTC--------CCTTCTTCCEEEC
T ss_pred -----hHhcCCCCCCEEEccCCcCCCCCHHH-----hcCCCCCCEEECCCCcCCCCChh--------hhhcCcccCeecc
Confidence 12234455555555555554432211 12335555555555555432111 2333333444443
Q ss_pred ccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 358 LNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 358 l~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.+|.--...++.++. ..|++|+|++|.|.......+...-.....+..++++.|.++..... ......+..++
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-----~~~~~~~~~l~ 230 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLHKLT 230 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-----TTTTCEEEEEE
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc-----cccchhhhhhh
Confidence 333200000112222 56777777777776543333332111122355677777776542211 11122356677
Q ss_pred ccCCCCChh
Q 010572 436 AGYNLMPLE 444 (507)
Q Consensus 436 Ls~N~l~~~ 444 (507)
++.|.....
T Consensus 231 l~~n~~~~~ 239 (635)
T 4g8a_A 231 LRNNFDSLN 239 (635)
T ss_dssp EESCCSSHH
T ss_pred hhccccccc
Confidence 776666543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-09 Score=101.27 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=92.4
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|+|....... +...++|++|+|++|.|++..+. ++...
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~--------~~~~l------------------- 79 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGA-----FSPYKKLRRIDLSNNQISELAPD--------AFQGL------------------- 79 (220)
T ss_dssp TTCCEEECCSSCCCEECTTS-----STTCTTCCEEECCSSCCCEECTT--------TTTTC-------------------
T ss_pred cCCCEEECCCCcCCCcCHhH-----hhCCCCCCEEECCCCcCCCcCHH--------HhhCC-------------------
Confidence 68999999999998755421 24468999999999999853221 11111
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.|+..... .+...++|+.|+|++|.|......
T Consensus 80 ----~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~- 146 (220)
T 2v9t_B 80 ----RSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVD----AFQDLHNLNLLSLYDNKLQTIAKG- 146 (220)
T ss_dssp ----SSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTT-
T ss_pred ----cCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCHH----HcCCCCCCCEEECCCCcCCEECHH-
Confidence 567888999998875321 1234456799999999998765432 344557899999999998754321
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++.. ..+|+.|+|++|.|
T Consensus 147 ---~~~~-l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 147 ---TFSP-LRAIQTMHLAQNPF 164 (220)
T ss_dssp ---TTTT-CTTCCEEECCSSCE
T ss_pred ---HHhC-CCCCCEEEeCCCCc
Confidence 2332 35799999999988
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-09 Score=101.51 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=100.4
Q ss_pred ccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc
Q 010572 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (507)
Q Consensus 257 ~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~ 336 (507)
..++.|.++.+.+... + ...+..+++|++|+|++|++....... + ...++|++|+|++|.|+.....
T Consensus 32 ~~l~~L~l~~n~i~~i-----~---~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~-~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI-----P---PGAFSPYKKLRRIDLSNNQISELAPDA----F-QGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEE-----C---TTSSTTCTTCCEEECCSSCCCEECTTT----T-TTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCc-----C---HhHhhCCCCCCEEECCCCcCCCcCHHH----h-hCCcCCCEEECCCCcCCccCHh
Confidence 3578888887765432 1 124677899999999999998764432 2 4569999999999999852211
Q ss_pred cccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE 416 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~ 416 (507)
.+... .+|++|+|++|.|+.... .++....+|++|+|++|.++..
T Consensus 99 --------~f~~l-----------------------~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 99 --------LFEGL-----------------------FSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp --------TTTTC-----------------------TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCC
T ss_pred --------HccCC-----------------------CCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCCEE
Confidence 11111 568899999999976432 2355567899999999998765
Q ss_pred HHHHHHhhCCCCCCccEEEccCCCCCh-hHHHHHHHHHh
Q 010572 417 TAKFLSKLMPLAPELVEVNAGYNLMPL-ESLTIICSALK 454 (507)
Q Consensus 417 g~~~L~~~L~~n~~L~~L~Ls~N~l~~-~g~~~L~~aL~ 454 (507)
... .+...++|+.|+|++|++.- -...-+.+-++
T Consensus 144 ~~~----~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 144 AKG----TFSPLRAIQTMHLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp CTT----TTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CHH----HHhCCCCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence 432 34455789999999999953 23344444444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.3e-09 Score=99.26 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=89.4
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
+.+++|+|++|+|....... .....++|++|+|++|.|++.... ++...
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~----~~~~l~~L~~L~L~~N~i~~i~~~--------~~~~l------------------- 80 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATG----IFKKLPQLRKINFSNNKITDIEEG--------AFEGA------------------- 80 (220)
T ss_dssp TTCSEEECCSSCCCEECCCC----CGGGCTTCCEEECCSSCCCEECTT--------TTTTC-------------------
T ss_pred CCCCEEEcCCCcCCccCchh----hhccCCCCCEEECCCCcCCEECHH--------HhCCC-------------------
Confidence 45788999999887653211 123458888999998888752211 11111
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.+|++|+|++|.|+.... .++....+|++|+|++|.|+..... .+...++|+.|+|++|.|..-..
T Consensus 81 ----~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~-- 146 (220)
T 2v70_A 81 ----SGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAP-- 146 (220)
T ss_dssp ----TTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSCCCCBCTT----SSTTCTTCSEEECTTSCCCCBCT--
T ss_pred ----CCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCcCCeECHh----HcCCCccCCEEECCCCcCCEECH--
Confidence 567888999998875432 2345567899999999988764332 34455789999999999875322
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.|
T Consensus 147 --~~~~~-l~~L~~L~L~~N~l 165 (220)
T 2v70_A 147 --GAFDT-LHSLSTLNLLANPF 165 (220)
T ss_dssp --TTTTT-CTTCCEEECCSCCE
T ss_pred --HHhcC-CCCCCEEEecCcCC
Confidence 12332 35799999999988
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-09 Score=101.28 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=56.3
Q ss_pred cEEEeccC-CCCchhHHHHHHhhcCCCCCC-EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC-CChhHHHHHHHH
Q 010572 376 QVLNIGAI-GLGSSGFRVLQDGVTKELKLV-NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIICSA 452 (507)
Q Consensus 376 ~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~-~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g~~~L~~a 452 (507)
++|++++| .++..... ++....+|+ +|++++|.++.-.. .++.. ++|+.|++++|. ++.-... +
T Consensus 133 ~~L~l~~N~~l~~i~~~----~~~~l~~L~~~L~l~~n~l~~i~~----~~~~~-~~L~~L~L~~n~~l~~i~~~----~ 199 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVN----AFQGLCNETLTLKLYNNGFTSVQG----YAFNG-TKLDAVYLNKNKYLTVIDKD----A 199 (239)
T ss_dssp EEEEEESCTTCCEECTT----TTTTTBSSEEEEECCSCCCCEECT----TTTTT-CEEEEEECTTCTTCCEECTT----T
T ss_pred cEEECCCCcchhhcCcc----cccchhcceeEEEcCCCCCcccCH----hhcCC-CCCCEEEcCCCCCcccCCHH----H
Confidence 39999999 88764322 244466899 99999999874332 12222 579999999995 8743211 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.....+|+.|+|++|.+
T Consensus 200 ~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp TTTCSBCCSEEECTTCCC
T ss_pred hhccccCCcEEECCCCcc
Confidence 222115799999999998
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=88.61 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=84.3
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASL 367 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L 367 (507)
.++|++|++++|.+.+.... ......++|++|+|++|.|++. . .+...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~-~---------~~~~l------------------ 63 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE----GLTDEFEELEFLSTINVGLTSI-A---------NLPKL------------------ 63 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC----SCCTTCTTCCEEECTTSCCCCC-T---------TCCCC------------------
T ss_pred CccCeEEEccCCcCChhHHH----HHHhhcCCCcEEECcCCCCCCc-h---------hhhcC------------------
Confidence 36789999999988732221 1124458899999999988752 1 11111
Q ss_pred HhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHH
Q 010572 368 GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLT 447 (507)
Q Consensus 368 ~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~ 447 (507)
++|++|+|++|.++.. +...+....+|++|++++|.+++... ...+...++|++|++++|.++.....
T Consensus 64 -----~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~ 131 (149)
T 2je0_A 64 -----NKLKKLELSDNRVSGG----LEVLAEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDY 131 (149)
T ss_dssp -----TTCCEEECCSSCCCSC----THHHHHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTH
T ss_pred -----CCCCEEECCCCcccch----HHHHhhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHH
Confidence 5678888888888763 22333345678999999998876321 12344557889999999988754321
Q ss_pred HHHHHHhcCCCCccEEEec
Q 010572 448 IICSALKVAKGHLQRLDLT 466 (507)
Q Consensus 448 ~L~~aL~~~~~~L~~LdL~ 466 (507)
....+... .+|+.||++
T Consensus 132 -~~~~~~~l-~~L~~L~l~ 148 (149)
T 2je0_A 132 -RENVFKLL-PQLTYLDGY 148 (149)
T ss_dssp -HHHHHHHC-TTCCEETTB
T ss_pred -HHHHHHHC-CCcccccCC
Confidence 01223322 468888875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-09 Score=99.82 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=110.6
Q ss_pred ccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHH
Q 010572 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (507)
Q Consensus 227 L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~ 306 (507)
-++++++++.++. .+. .. ...++.|.++.+.+..... ..++..+++|++|+|++|+|.....
T Consensus 13 ~~~l~~s~n~l~~-iP~---------~~-~~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~i~~i~~ 74 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPE---------HI-PQYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNKITDIEE 74 (220)
T ss_dssp TTEEECCSSCCSS-CCS---------CC-CTTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSCCCEECT
T ss_pred CCEeEeCCCCccc-Ccc---------CC-CCCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCcCCEECH
Confidence 4678888887763 110 01 2346788888777543211 1235778999999999999987654
Q ss_pred HHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCC
Q 010572 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLG 386 (507)
Q Consensus 307 ~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~ 386 (507)
.. +...++|++|+|++|.|++..+. ++... .+|++|+|++|.|+
T Consensus 75 ~~-----~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l-----------------------~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 75 GA-----FEGASGVNEILLTSNRLENVQHK--------MFKGL-----------------------ESLKTLMLRSNRIT 118 (220)
T ss_dssp TT-----TTTCTTCCEEECCSSCCCCCCGG--------GGTTC-----------------------SSCCEEECTTSCCC
T ss_pred HH-----hCCCCCCCEEECCCCccCccCHh--------HhcCC-----------------------cCCCEEECCCCcCC
Confidence 22 24568999999999999863221 11111 56889999999997
Q ss_pred chhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh-HHHHHHHHHh
Q 010572 387 SSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE-SLTIICSALK 454 (507)
Q Consensus 387 ~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~-g~~~L~~aL~ 454 (507)
.... .++....+|++|+|++|.++..... .+...++|+.|+|++|.+..+ ....+..-++
T Consensus 119 ~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 119 CVGN----DSFIGLSSVRLLSLYDNQITTVAPG----AFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp CBCT----TSSTTCTTCSEEECTTSCCCCBCTT----TTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred eECH----hHcCCCccCCEEECCCCcCCEECHH----HhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 6432 2344567899999999999875433 344567899999999999632 3333444443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=90.43 Aligned_cols=138 Identities=16% Similarity=0.024 Sum_probs=93.5
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
..++|++|+|++|.+.+..... .....++|++|+|++|.|++. . .+...
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~-~---------~~~~l----------------- 70 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV-S---------NLPKL----------------- 70 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC-S---------SCCCC-----------------
T ss_pred CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh-h---------hhccC-----------------
Confidence 3478999999999997322211 123358899999999999853 1 11111
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
++|++|+|++|.++.. +...+....+|++|+|++|.+++... ...+...++|++|++++|.+.....
T Consensus 71 ------~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 71 ------PKLKKLELSENRIFGG----LDMLAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp ------SSCCEEEEESCCCCSC----CCHHHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ------CCCCEEECcCCcCchH----HHHHHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH
Confidence 5688999999999763 22223346789999999999887321 0344566889999999999976432
Q ss_pred HHHHHHHhcCCCCccEEEecCCCC
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
. ...++.. ..+|+.|++++|.+
T Consensus 138 ~-~~~~~~~-l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 138 Y-RESVFKL-LPQLTYLDGYDRED 159 (168)
T ss_dssp H-HHHHHTT-CSSCCEETTEETTS
T ss_pred H-HHHHHHh-CccCcEecCCCCCh
Confidence 1 1123433 35899999999986
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=90.45 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=92.6
Q ss_pred ccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc
Q 010572 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (507)
Q Consensus 257 ~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~ 336 (507)
..++.|+++.+.+.+ ..+ ...+..+++|++|+|++|.+.+. ..+ ...++|++|+|++|.|++.++.
T Consensus 17 ~~l~~L~l~~n~l~~---~~~----~~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNE---GKL----EGLTDEFEELEFLSTINVGLTSI------ANL-PKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGCSEEECTTCBCBT---TBC----CSCCTTCTTCCEEECTTSCCCCC------TTC-CCCTTCCEEECCSSCCCSCTHH
T ss_pred ccCeEEEccCCcCCh---hHH----HHHHhhcCCCcEEECcCCCCCCc------hhh-hcCCCCCEEECCCCcccchHHH
Confidence 468888888877541 112 22357789999999999999886 223 4569999999999999864321
Q ss_pred cccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE 416 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~ 416 (507)
. +.. -++|++|+|++|.++... ....+....+|++|++++|.++..
T Consensus 83 --------~---------------------~~~--l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 83 --------L---------------------AEK--CPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp --------H---------------------HHH--CTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGS
T ss_pred --------H---------------------hhh--CCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccch
Confidence 0 000 167899999999998743 224466678899999999998765
Q ss_pred HH---HHHHhhCCCCCCccEEEccC
Q 010572 417 TA---KFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 417 g~---~~L~~~L~~n~~L~~L~Ls~ 438 (507)
.. ..+.. .++|+.|+++.
T Consensus 129 ~~~~~~~~~~----l~~L~~L~l~d 149 (149)
T 2je0_A 129 NDYRENVFKL----LPQLTYLDGYD 149 (149)
T ss_dssp TTHHHHHHHH----CTTCCEETTBC
T ss_pred HHHHHHHHHH----CCCcccccCCC
Confidence 44 33433 47899999873
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-09 Score=118.70 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHH-HHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET-AKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g-~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
++|+.|+|++|.|+.. . .+....+|++|+|++|.|+... +.. +...++|+.|+|++|.|.
T Consensus 486 ~~L~~L~Ls~N~l~~l-----p-~l~~l~~L~~L~Ls~N~l~~~~~p~~----l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 486 RCLEVLQASDNALENV-----D-GVANLPRLQELLLCNNRLQQSAAIQP----LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp TTCCEEECCSSCCCCC-----G-GGTTCSSCCEEECCSSCCCSSSTTGG----GGGCTTCCEEECTTSGGG
T ss_pred CCCCEEECCCCCCCCC-----c-ccCCCCCCcEEECCCCCCCCCCCcHH----HhcCCCCCEEEecCCcCC
Confidence 4566666777666542 1 3444556777777777665532 222 223456677777777664
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-08 Score=92.82 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=83.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCC-CChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g~~~L~ 450 (507)
-.|++|||++|.|+++|.+.| ....+|++|+|++|. |+|.|.+.|+..-...++|++|+|++|. |+|+|++.|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 468999999999999998776 356789999999995 9999999998631012469999999975 9999998664
Q ss_pred HHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCeEE
Q 010572 451 SALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILI 492 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i~~ 492 (507)
. ..+|++|+|+++.- +++.+ -....++++-|.+.|
T Consensus 137 ----~-~~~L~~L~L~~c~~-Itd~g-l~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 137 ----H-FRNLKYLFLSDLPG-VKEKE-KIVQAFKTSLPSLEL 171 (176)
T ss_dssp ----G-CTTCCEEEEESCTT-CCCHH-HHHHHHHHHCTTCEE
T ss_pred ----c-CCCCCEEECCCCCC-CCchH-HHHHHHHHHCCCcEE
Confidence 3 36899999999974 56543 234455555555544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-09 Score=96.61 Aligned_cols=138 Identities=18% Similarity=0.101 Sum_probs=97.3
Q ss_pred ccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc
Q 010572 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (507)
Q Consensus 257 ~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~ 336 (507)
..++.|+++.+.+.+ ..+ ...+..+++|++|+|++|.+.+. ..+ ...++|++|+|++|.|++.++.
T Consensus 24 ~~L~~L~l~~n~l~~---~~i----~~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 24 AAVRELVLDNCKSND---GKI----EGLTAEFVNLEFLSLINVGLISV------SNL-PKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp TSCSEEECCSCBCBT---TBC----SSCCGGGGGCCEEEEESSCCCCC------SSC-CCCSSCCEEEEESCCCCSCCCH
T ss_pred ccCCEEECCCCCCCh---hhH----HHHHHhCCCCCEEeCcCCCCCCh------hhh-ccCCCCCEEECcCCcCchHHHH
Confidence 458889888877541 112 22356678999999999999876 223 4569999999999999864321
Q ss_pred cccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE 416 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~ 416 (507)
. ... -++|++|+|++|.|+.... ...+....+|++|++++|.++..
T Consensus 90 --------~------------------~~~-----l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 90 --------L------------------AEK-----LPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp --------H------------------HHH-----CTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTS
T ss_pred --------H------------------Hhh-----CCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcch
Confidence 0 000 1678999999999987421 13455677899999999998765
Q ss_pred HHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 417 TAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 417 g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
.. .....+...++|+.|+++.|.+..
T Consensus 136 ~~-~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 136 ND-YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TT-HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HH-HHHHHHHhCccCcEecCCCCChhh
Confidence 43 112234456889999999998853
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.9e-09 Score=105.87 Aligned_cols=164 Identities=18% Similarity=0.097 Sum_probs=107.8
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
..+++|+|++|.+++-....+ . . ....++.|.++.+++.+. + ..++..+++|++|+|++|+|...
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~----~-~--~l~~L~~L~L~~N~i~~i-----~---~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWT----P-T--RLTNLHSLLLSHNHLNFI-----S---SEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSS----S-S--CCTTCCEEECCSSCCCEE-----C---TTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCCCCccChhhh----h-h--cccccCEEECCCCcCCcc-----C---hhhccCCCCCCEEECCCCcCCcC
Confidence 468999999999876332111 0 0 124578888887765432 1 12467889999999999999875
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCC
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIG 384 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~ 384 (507)
.... +...++|++|+|++|.|++..+. ++... ..|++|+|++|.
T Consensus 104 ~~~~-----~~~l~~L~~L~L~~N~i~~~~~~--------~~~~l-----------------------~~L~~L~L~~N~ 147 (361)
T 2xot_A 104 DEFL-----FSDLQALEVLLLYNNHIVVVDRN--------AFEDM-----------------------AQLQKLYLSQNQ 147 (361)
T ss_dssp CTTT-----TTTCTTCCEEECCSSCCCEECTT--------TTTTC-----------------------TTCCEEECCSSC
T ss_pred CHHH-----hCCCcCCCEEECCCCcccEECHH--------HhCCc-----------------------ccCCEEECCCCc
Confidence 4322 24569999999999999853221 11111 567888888888
Q ss_pred CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC--ccEEEccCCCCChh
Q 010572 385 LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE--LVEVNAGYNLMPLE 444 (507)
Q Consensus 385 l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~--L~~L~Ls~N~l~~~ 444 (507)
|+......+. .+....+|++|+|++|.|+.-....+... +. |+.|+|++|++.-+
T Consensus 148 l~~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l----~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 148 ISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKL----PAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSCCGGGTC-----CTTCCEEECCSSCCCCCCHHHHHHS----CHHHHTTEECCSSCEECC
T ss_pred CCeeCHHHhc-CcccCCcCCEEECCCCCCCccCHHHhhhc----cHhhcceEEecCCCccCC
Confidence 8764322211 11345679999999999887655555543 33 57889999998743
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-08 Score=94.04 Aligned_cols=128 Identities=18% Similarity=0.076 Sum_probs=87.7
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
-+.++.+++.+..... ....+|++|+|++|.|++.... .+...
T Consensus 9 ~~~v~c~~~~l~~~p~--------~~~~~l~~L~l~~n~l~~~~~~--------~~~~l--------------------- 51 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT--------GIPAQTTYLDLETNSLKSLPNG--------VFDEL--------------------- 51 (208)
T ss_dssp TTEEECCSSCCSSCCS--------CCCTTCSEEECCSSCCCCCCTT--------TTTTC---------------------
T ss_pred CCEEEecCCCccCCCC--------CCCCCCcEEEcCCCccCcCChh--------hhccc---------------------
Confidence 3567777777765321 1236899999999999853221 11111
Q ss_pred hcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHH
Q 010572 371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIIC 450 (507)
Q Consensus 371 l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~ 450 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.++.... ..+...++|++|++++|.|+....
T Consensus 52 --~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~---- 117 (208)
T 2o6s_A 52 --TSLTQLYLGGNKLQSLPN----GVFNKLTSLTYLNLSTNQLQSLPN----GVFDKLTQLKELALNTNQLQSLPD---- 117 (208)
T ss_dssp --TTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred --ccCcEEECCCCccCccCh----hhcCCCCCcCEEECCCCcCCccCH----hHhcCccCCCEEEcCCCcCcccCH----
Confidence 568999999999975321 234456789999999999875432 234556789999999999985332
Q ss_pred HHHhcCCCCccEEEecCCCC
Q 010572 451 SALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.+
T Consensus 118 ~~~~~-l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 118 GVFDK-LTQLKDLRLYQNQL 136 (208)
T ss_dssp TTTTT-CTTCCEEECCSSCC
T ss_pred hHhcc-CCcCCEEECCCCcc
Confidence 12332 36899999999988
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.2e-08 Score=110.11 Aligned_cols=190 Identities=16% Similarity=0.082 Sum_probs=96.2
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~ 361 (507)
...+..+++|+.|+|++|.+..-.. .+. ..++|++|+|++|.|+ .++. .++...+|+.|.+.+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~-~l~~L~~L~Ls~N~l~-~lp~--------~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISA-----NIF-KYDFLTRLYLNGNSLT-ELPA--------EIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCG-----GGG-GCCSCSCCBCTTSCCS-CCCG--------GGGGGTTCCEEECTTSC
T ss_pred hhhhccCCCCcEEECCCCCCCCCCh-----hhc-CCCCCCEEEeeCCcCc-ccCh--------hhhCCCCCCEEeCcCCc
Confidence 3456778889999999999874322 122 3588999999999998 3332 45566667777776665
Q ss_pred hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhh--------C------
Q 010572 362 HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKL--------M------ 425 (507)
Q Consensus 362 ~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~--------L------ 425 (507)
+. .++..+. .+|++|+|++|.|+. |...+....+|++|+|++|.++......+... +
T Consensus 282 -l~-~lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 282 -LT-SLPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp -CS-SCCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred -CC-ccChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 11 3444444 789999999999974 23335566789999999999987666554321 1
Q ss_pred -CCCCCccEEEccCCCCChhHHHHHHHHHhc---CCCCccEEEecCCCCC--CC--------cc----H----HHHHHHH
Q 010572 426 -PLAPELVEVNAGYNLMPLESLTIICSALKV---AKGHLQRLDLTGNNWE--LQ--------PS----H----VSMLSEF 483 (507)
Q Consensus 426 -~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~---~~~~L~~LdL~~N~~~--~~--------~~----~----~~~l~~~ 483 (507)
..-..|+.|+++.|.........|...... ....++...++.|.+. +. +. + ..++.++
T Consensus 355 ~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I 434 (727)
T 4b8c_D 355 IPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQI 434 (727)
T ss_dssp CCCCCC-----------------------------------------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHH
T ss_pred CcCccccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHH
Confidence 111247888888772111111111111110 1123445566777651 11 11 1 2355777
Q ss_pred HHcCCCeEEc
Q 010572 484 RHNGLPILIL 493 (507)
Q Consensus 484 ~~~~~~i~~~ 493 (507)
.+.++.|+++
T Consensus 435 ~~~~pDIIcL 444 (727)
T 4b8c_D 435 LSYDSDLLCL 444 (727)
T ss_dssp HHSCCSSEEE
T ss_pred HHcCCCeEEE
Confidence 7888899876
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.5e-08 Score=88.53 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=81.7
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
...++|++|+|++|++..- . .+....++|+.|+|++|.|++. . .+...
T Consensus 16 ~~~~~L~~L~l~~n~l~~i--~----~~~~~~~~L~~L~Ls~N~l~~~-~---------~l~~l---------------- 63 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI--E----NLGATLDQFDAIDFSDNEIRKL-D---------GFPLL---------------- 63 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC--C----CGGGGTTCCSEEECCSSCCCEE-C---------CCCCC----------------
T ss_pred CCcCCceEEEeeCCCCchh--H----HhhhcCCCCCEEECCCCCCCcc-c---------ccccC----------------
Confidence 4466888899999888753 1 1223334889999999888752 1 11111
Q ss_pred HHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 366 ~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
++|++|+|++|.|+...... +....+|++|+|++|.|+.-.. + ..+...++|+.|++++|.+....
T Consensus 64 -------~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~--~-~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 64 -------RRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLVELGD--L-DPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp -------SSCCEEECCSSCCCEECSCH----HHHCTTCCEEECCSCCCCCGGG--G-GGGGGCTTCCEEECCSSGGGGST
T ss_pred -------CCCCEEECCCCcccccCcch----hhcCCCCCEEECCCCcCCcchh--h-HhhhcCCCCCEEEecCCCCCCcH
Confidence 45677788888876532111 1335578888888888765321 0 12334567888888888886432
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... ..++.. .++|+.||+++|..
T Consensus 130 ~~~-~~~~~~-l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 130 HYR-LYVIYK-VPQVRVLDFQKVKL 152 (176)
T ss_dssp THH-HHHHHH-CTTCSEETTEECCH
T ss_pred hHH-HHHHHH-CCccceeCCCcCCH
Confidence 110 112222 24688888888763
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.55 E-value=5.7e-08 Score=90.48 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=33.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
..|++|+|++|.|+.... .++....+|++|+|++|.++...+ ..+...++|++|+|++|.+.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMP----GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECT----TSSTTCTTCCEEECTTCCBC
T ss_pred ccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCeeCH----HHhhcCCCCCEEEeCCCCcc
Confidence 456666666666654321 123334556666666666654322 22333455666666666665
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=86.17 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=33.1
Q ss_pred CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHH
Q 010572 400 ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSM 479 (507)
Q Consensus 400 n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~ 479 (507)
..+|++|+|++|.++.... ..+...++|+.|++++|.|+.-.. .++.. ..+|+.|+|++|.+.-.......
T Consensus 75 l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~-l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPN----GVFDKLTQLKELALDTNQLKSVPD----GIFDR-LTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTT-CTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCccCEEECCCCCccccCH----HHhhCCcccCEEECcCCcceEeCH----HHhcC-CcccCEEEecCCCeeccCccHHH
Confidence 3345555555555443211 112233455555555555542111 11111 23456666666655222222344
Q ss_pred HHHHHHcC
Q 010572 480 LSEFRHNG 487 (507)
Q Consensus 480 l~~~~~~~ 487 (507)
+.+..++.
T Consensus 146 l~~~~~~~ 153 (177)
T 2o6r_A 146 LSRWLNKN 153 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhC
Confidence 44444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-09 Score=115.71 Aligned_cols=137 Identities=19% Similarity=0.161 Sum_probs=90.9
Q ss_pred HHHhCCCCCCEEE-ccCCCCCchHHHHHH----HHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccc
Q 010572 283 SFLSSGRSLCSLK-LRHCHLDRDFGRMVF----SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 283 ~~L~~~~sL~~L~-LS~N~L~~~g~~~L~----~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~l 357 (507)
..+..+++|+.|+ ++.|.+.+-....+. ..+ +...|+.|+|++|.|++ ++. ++
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~-lp~---------~~---------- 460 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTV-LCH---------LE---------- 460 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSS-CCC---------GG----------
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCCCCCC-CcC---------cc----------
Confidence 3455556666676 555544322111110 111 12469999999999985 110 00
Q ss_pred ccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEcc
Q 010572 358 LNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAG 437 (507)
Q Consensus 358 l~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls 437 (507)
. -.+|+.|+|++|.|+. +...+....+|++|+|++|.|+.- . .+...++|+.|+|+
T Consensus 461 -----------~--l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 461 -----------Q--LLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GVANLPRLQELLLC 516 (567)
T ss_dssp -----------G--GTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GGTTCSSCCEEECC
T ss_pred -----------c--cccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-ccCCCCCCcEEECC
Confidence 0 0578999999999984 233566678999999999999862 2 45566899999999
Q ss_pred CCCCChhH-HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 438 YNLMPLES-LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 438 ~N~l~~~g-~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|.|+... . ..+.. ..+|+.|+|++|.+
T Consensus 517 ~N~l~~~~~p----~~l~~-l~~L~~L~L~~N~l 545 (567)
T 1dce_A 517 NNRLQQSAAI----QPLVS-CPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCCSSSTT----GGGGG-CTTCCEEECTTSGG
T ss_pred CCCCCCCCCc----HHHhc-CCCCCEEEecCCcC
Confidence 99998542 2 22333 36899999999998
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-08 Score=92.27 Aligned_cols=137 Identities=19% Similarity=0.155 Sum_probs=92.9
Q ss_pred HHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchh
Q 010572 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH 362 (507)
Q Consensus 283 ~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~ 362 (507)
..+..+++|++|+|++|.+.+-. .+ ...++|++|+|++|.|+. ++.
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~--~~-----~~l~~L~~L~l~~n~l~~-l~~-------------------------- 87 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS--SL-----SGMENLRILSLGRNLIKK-IEN-------------------------- 87 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC--CH-----HHHTTCCEEEEEEEEECS-CSS--------------------------
T ss_pred HHHhcCCCCCEEECCCCCCcccc--cc-----ccCCCCCEEECCCCCccc-ccc--------------------------
Confidence 35677888999999999887732 22 223789999999988863 110
Q ss_pred HHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 363 IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 363 ~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
....+ ++|++|+|++|.|+... .+....+|++|+|++|.++.-... ..+...++|++|++++|.+.
T Consensus 88 ~~~~~-----~~L~~L~L~~N~l~~l~------~~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 88 LDAVA-----DTLEELWISYNQIASLS------GIEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHH-----HHCSEEEEEEEECCCHH------HHHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSCHHH
T ss_pred hhhcC-----CcCCEEECcCCcCCcCC------ccccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecCCccc
Confidence 11111 46899999999998642 233456799999999999874431 12344578999999999986
Q ss_pred hhH------HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 443 LES------LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 443 ~~g------~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... ......++... .+|+.|| +|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l-~~L~~Ld--~~~i 184 (198)
T 1ds9_A 154 NDYKENNATSEYRIEVVKRL-PNLKKLD--GMPV 184 (198)
T ss_dssp HHHHTTTTHHHHHHHHHHHC-SSCSEEC--CGGG
T ss_pred cccccccchHHHHHHHHHhC-CCcEEEC--Cccc
Confidence 542 22333445543 6799987 7776
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-07 Score=86.00 Aligned_cols=67 Identities=7% Similarity=-0.048 Sum_probs=30.3
Q ss_pred CcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCC-CChhH
Q 010572 375 VQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNL-MPLES 445 (507)
Q Consensus 375 L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g 445 (507)
|++|+|++|. |+|.|.+.|+..-....+|++|+|++|. ||+.|...|+. .++|++|+++++. +++.|
T Consensus 87 L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~----~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 87 VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH----FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG----CTTCCEEEEESCTTCCCHH
T ss_pred CCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc----CCCCCEEECCCCCCCCchH
Confidence 4444444442 4444444444310001235555555543 55555554432 2455555555543 55544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-07 Score=88.07 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=53.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|++|+|++|.|+... ..++....+|++|+|++|.|+.... ..+...++|+.|+|++|.|...... +
T Consensus 54 ~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~ 121 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMPG----S 121 (192)
T ss_dssp TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECTT----S
T ss_pred CCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCeeCHH----H
Confidence 45677777777776432 2234455678888888888775432 2334456788888888888743211 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.|
T Consensus 122 ~~~-l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 122 FEH-LNSLTSLNLASNPF 138 (192)
T ss_dssp STT-CTTCCEEECTTCCB
T ss_pred hhc-CCCCCEEEeCCCCc
Confidence 222 25688888888887
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-07 Score=86.61 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=19.5
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++|++|+|++|.|..-. . .+ ....+|++|+|++|.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~----~~-~~l~~L~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-K----EL-SNYKHLTLIDLSNNRIST 68 (193)
T ss_dssp TTCCEEECCSSCCCSCC-G----GG-GGCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCchhH-H----Hh-hcccCCCEEECCCCcCCE
Confidence 35666666666665321 1 12 234556666666666553
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-07 Score=83.75 Aligned_cols=124 Identities=16% Similarity=0.086 Sum_probs=83.1
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|++....... ....++|++|+|++|.|++.... .+...
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l------------------- 75 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPDG--------VFDKL------------------- 75 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTT--------TTTTC-------------------
T ss_pred CCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeChh--------HccCC-------------------
Confidence 57899999999987644321 23458899999999988752211 11110
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh--HH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE--SL 446 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~--g~ 446 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.++.-.. ..+...++|+.|++++|.+... .+
T Consensus 76 ----~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 76 ----TKLTILYLHENKLQSLPN----GVFDKLTQLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp ----TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ----CccCEEECCCCCccccCH----HHhhCCcccCEEECcCCcceEeCH----HHhcCCcccCEEEecCCCeeccCccH
Confidence 568889999998875321 224456789999999999874322 2344567899999999999753 35
Q ss_pred HHHHHHHhcC
Q 010572 447 TIICSALKVA 456 (507)
Q Consensus 447 ~~L~~aL~~~ 456 (507)
..+..-+...
T Consensus 144 ~~l~~~~~~~ 153 (177)
T 2o6r_A 144 DYLSRWLNKN 153 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhC
Confidence 5565555543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=80.07 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=79.5
Q ss_pred CCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHH
Q 010572 316 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 395 (507)
Q Consensus 316 ~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~ 395 (507)
+.++|++|+|++|.|+.. +. + ..+.++|++|+|++|.|+.. .
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~------------------------------~-~~~~~~L~~L~Ls~N~l~~~------~ 58 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN------------------------------L-GATLDQFDAIDFSDNEIRKL------D 58 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC------------------------------G-GGGTTCCSEEECCSSCCCEE------C
T ss_pred CcCCceEEEeeCCCCchh-HH------------------------------h-hhcCCCCCEEECCCCCCCcc------c
Confidence 358899999999999841 10 0 00114799999999999864 4
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 396 GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 396 aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+....+|++|+|++|.++.-....+.. .++|+.|+|++|.|++-.. + ..+.. ..+|+.|+|++|.+
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~N~i~~~~~--~-~~l~~-l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQA----LPDLTELILTNNSLVELGD--L-DPLAS-LKSLTYLCILRNPV 125 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHH----CTTCCEEECCSCCCCCGGG--G-GGGGG-CTTCCEEECCSSGG
T ss_pred ccccCCCCCEEECCCCcccccCcchhhc----CCCCCEEECCCCcCCcchh--h-Hhhhc-CCCCCEEEecCCCC
Confidence 5667788999999999998643333333 3789999999999986331 0 13443 36899999999998
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.5e-08 Score=91.38 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=106.0
Q ss_pred CCccEEEeecCCCChhHHH-----HHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC
Q 010572 225 ETLASLEFLHCKLSPSFVE-----GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 299 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~-----~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N 299 (507)
..++.++++++.+++.... ..+..+ ..++.|+++.+.+.+ ++ .+..+++|++|+|++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l-------~~L~~L~ls~n~l~~-----l~-----~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTL-------KACKHLALSTNNIEK-----IS-----SLSGMENLRILSLGRN 80 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHT-------TTCSEEECSEEEESC-----CC-----CHHHHTTCCEEEEEEE
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcC-------CCCCEEECCCCCCcc-----cc-----ccccCCCCCEEECCCC
Confidence 5677777777777665432 122222 358888888877643 22 3456789999999999
Q ss_pred CCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEE
Q 010572 300 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLN 379 (507)
Q Consensus 300 ~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~ 379 (507)
.+..-.. ... ..++|++|+|++|.|++. + .+... ++|++|+
T Consensus 81 ~l~~l~~--~~~----~~~~L~~L~L~~N~l~~l-~------------------------------~~~~l--~~L~~L~ 121 (198)
T 1ds9_A 81 LIKKIEN--LDA----VADTLEELWISYNQIASL-S------------------------------GIEKL--VNLRVLY 121 (198)
T ss_dssp EECSCSS--HHH----HHHHCSEEEEEEEECCCH-H------------------------------HHHHH--HHSSEEE
T ss_pred Ccccccc--hhh----cCCcCCEEECcCCcCCcC-C------------------------------ccccC--CCCCEEE
Confidence 9985321 211 237899999999999751 0 01111 5689999
Q ss_pred eccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHH------HHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 380 IGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET------AKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 380 Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g------~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
|++|.|+..+.- ..+....+|++|++++|.++... ......++...++|+.|| +|.+.+
T Consensus 122 l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKITNWGEI---DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECCCHHHH---HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCCchhHH---HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999875431 34556778999999999986653 233344455568899987 777765
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.3e-07 Score=83.63 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=75.1
Q ss_pred CEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhh
Q 010572 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFF 371 (507)
Q Consensus 292 ~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l 371 (507)
+.+++++|+|+.-.. . ...+|++|+|++|.|+.. +. .+...
T Consensus 13 ~~l~~~~~~l~~ip~-----~---~~~~l~~L~L~~n~i~~i-p~--------~~~~l---------------------- 53 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-----G---IPRDVTELYLDGNQFTLV-PK--------ELSNY---------------------- 53 (193)
T ss_dssp TEEECTTSCCSSCCS-----C---CCTTCCEEECCSSCCCSC-CG--------GGGGC----------------------
T ss_pred CEEEcCCCCCCcCCC-----C---CCCCCCEEECCCCcCchh-HH--------Hhhcc----------------------
Confidence 567888887765321 1 125788888888888631 10 11111
Q ss_pred cCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 372 ~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
.+|++|+|++|.|+.... .++.....|++|+|++|.|+..... ++...++|+.|+|++|.|..-.. .
T Consensus 54 -~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~N~l~~~~~----~ 120 (193)
T 2wfh_A 54 -KHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLRLLSLHGNDISVVPE----G 120 (193)
T ss_dssp -TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCCCBCCT----T
T ss_pred -cCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCCccCEeCHH----HhCCCCCCCEEECCCCCCCeeCh----h
Confidence 457777777777765321 2344456788888888877654322 33445678888888888763221 1
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
++.. ..+|+.|+|++|.|
T Consensus 121 ~~~~-l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 121 AFND-LSALSHLAIGANPL 138 (193)
T ss_dssp TTTT-CTTCCEEECCSSCE
T ss_pred hhhc-CccccEEEeCCCCe
Confidence 2222 24678888888877
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.4e-07 Score=99.50 Aligned_cols=133 Identities=18% Similarity=0.089 Sum_probs=82.6
Q ss_pred cCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHH
Q 010572 315 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRV 392 (507)
Q Consensus 315 ~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~ 392 (507)
.....|+.|+|++|.|.. ++. .+....+|+.|.+.+|. +. .++..+. .+|++|+|++|.|+.
T Consensus 221 ~~l~~L~~L~Ls~n~l~~-l~~--------~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~~----- 284 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN-ISA--------NIFKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHNRLTS----- 284 (727)
T ss_dssp -CCCCCCEEECTTSCCSC-CCG--------GGGGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTSCCSS-----
T ss_pred ccCCCCcEEECCCCCCCC-CCh--------hhcCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCCcCCc-----
Confidence 456899999999999984 221 33355667777776665 11 3444444 889999999999983
Q ss_pred HHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH--------HHhcC------CC
Q 010572 393 LQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS--------ALKVA------KG 458 (507)
Q Consensus 393 L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~--------aL~~~------~~ 458 (507)
|...+....+|++|+|++|.|+. +...+...++|+.|+|++|.|.......+.. -|..+ ..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 23345556789999999999873 2233556678999999999998644333321 12221 13
Q ss_pred CccEEEecCC
Q 010572 459 HLQRLDLTGN 468 (507)
Q Consensus 459 ~L~~LdL~~N 468 (507)
.|+.|+++.|
T Consensus 360 ~l~~l~l~~n 369 (727)
T 4b8c_D 360 ERRFIEINTD 369 (727)
T ss_dssp C---------
T ss_pred ccceeEeecc
Confidence 5777888777
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.14 E-value=8.6e-07 Score=80.92 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..+++|+|++|.|+... ...+....+|++|+|++|.|+.-.. .++...++|++|+|++|.|..-.. .+
T Consensus 30 ~~l~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~ 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE----PGVFDRLTQLTRLDLDNNQLTVLPA----GVFDKLTQLTQLSLNDNQLKSIPR----GA 97 (170)
T ss_dssp TTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCcEEEcCCCcCCccC----hhhhcCcccCCEEECCCCCcCccCh----hhccCCCCCCEEECCCCccCEeCH----HH
Confidence 56788999999987532 2234456679999999999875332 233455789999999999974221 12
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
+.. ..+|+.|+|++|.|.-.......+.......+.+
T Consensus 98 ~~~-l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~ 134 (170)
T 3g39_A 98 FDN-LKSLTHIWLLNNPWDCACSDILYLSRWISQHPGL 134 (170)
T ss_dssp TTT-CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred hcC-CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence 332 3579999999999843433344455555554444
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-06 Score=80.24 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|++|+|++|.|+... ...+....+|++|+|++|.|+.--. .++...++|+.|+|++|.|..-.. .+
T Consensus 33 ~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~L~~N~l~~l~~----~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE----PGVFDHLVNLQQLYFNSNKLTAIPT----GVFDKLTQLTQLDLNDNHLKSIPR----GA 100 (174)
T ss_dssp TTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCcEEEeCCCCccccC----HHHhcCCcCCCEEECCCCCCCccCh----hHhCCcchhhEEECCCCccceeCH----HH
Confidence 56788999999987532 2234456779999999999875321 233455789999999999974211 12
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
+.. ..+|+.|+|++|.|.-.......+.........+
T Consensus 101 ~~~-l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~ 137 (174)
T 2r9u_A 101 FDN-LKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSI 137 (174)
T ss_dssp TTT-CTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred hcc-ccCCCEEEeCCCCcccccccHHHHHHHHHhcccc
Confidence 332 3579999999999854444445555555555444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.09 E-value=5.5e-06 Score=75.51 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=73.2
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHh
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK 369 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~ 369 (507)
+.+.+++++|+|..-.. . ....|++|+|++|.|++..+. .+...
T Consensus 10 ~~~~l~~s~n~l~~ip~-----~---~~~~l~~L~L~~N~i~~~~~~--------~~~~l-------------------- 53 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-----G---IPTTTQVLYLYDNQITKLEPG--------VFDRL-------------------- 53 (170)
T ss_dssp ETTEEECTTSCCSSCCS-----C---CCTTCSEEECCSSCCCCCCTT--------TTTTC--------------------
T ss_pred CCCEEEeCCCCcCccCc-----c---CCCCCcEEEcCCCcCCccChh--------hhcCc--------------------
Confidence 35678888887765321 1 126788888888888753221 11110
Q ss_pred hhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh--HHH
Q 010572 370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE--SLT 447 (507)
Q Consensus 370 ~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~--g~~ 447 (507)
..|++|+|++|+|+.... +++....+|++|+|++|.|+.-.. .++...++|+.|+|++|++.-. ...
T Consensus 54 ---~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 54 ---TQLTRLDLDNNQLTVLPA----GVFDKLTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNPWDCACSDIL 122 (170)
T ss_dssp ---TTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCBCTTBGGGH
T ss_pred ---ccCCEEECCCCCcCccCh----hhccCCCCCCEEECCCCccCEeCH----HHhcCCCCCCEEEeCCCCCCCCchhHH
Confidence 457778888888764321 123345678888888888764322 2344557788889998888644 355
Q ss_pred HHHHHHhcC
Q 010572 448 IICSALKVA 456 (507)
Q Consensus 448 ~L~~aL~~~ 456 (507)
.+..-+++.
T Consensus 123 ~l~~~l~~~ 131 (170)
T 3g39_A 123 YLSRWISQH 131 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 555555543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-07 Score=94.29 Aligned_cols=181 Identities=14% Similarity=0.053 Sum_probs=87.6
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccc-eeccccccccCCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIEN-LSIDISSFIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~-L~l~~~~~le~~~~ 275 (507)
..+++|+|++|... .+-+..+.++++|++|+|++|.+.+......+..| ..+.. +.+..+++..
T Consensus 30 ~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-------~~l~~~l~~~~N~l~~---- 94 (350)
T 4ay9_X 30 RNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-------PKLHEIRIEKANNLLY---- 94 (350)
T ss_dssp TTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC-------TTCCEEEEEEETTCCE----
T ss_pred CCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc-------hhhhhhhcccCCcccc----
Confidence 46889999887432 11111235678999999999986432211100000 11111 2222222211
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcC-CCCCCcccccccCCchhhcccC-CCcC
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAG-KSLQ 353 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~-N~L~~~l~~~~~~~l~~~L~~~-~~L~ 353 (507)
++ ..++..+++|++|++++|++....... . .....+..|++++ |.++..... ++... ..++
T Consensus 95 -l~---~~~f~~l~~L~~L~l~~n~l~~~~~~~----~-~~~~~l~~l~l~~~~~i~~l~~~--------~f~~~~~~l~ 157 (350)
T 4ay9_X 95 -IN---PEAFQNLPNLQYLLISNTGIKHLPDVH----K-IHSLQKVLLDIQDNINIHTIERN--------SFVGLSFESV 157 (350)
T ss_dssp -EC---TTSBCCCTTCCEEEEEEECCSSCCCCT----T-CCBSSCEEEEEESCTTCCEECTT--------SSTTSBSSCE
T ss_pred -cC---chhhhhccccccccccccccccCCchh----h-cccchhhhhhhcccccccccccc--------chhhcchhhh
Confidence 11 124567788888888888886543211 1 1235677777765 455521110 11111 1233
Q ss_pred ccccccchhHHHHHHh-hhc-CCCcEEEecc-CCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh
Q 010572 354 SLRLLNLSHIAASLGK-FFG-TSVQVLNIGA-IGLGSSGFRVLQDGVTKELKLVNINISKNRGGV 415 (507)
Q Consensus 354 ~L~ll~l~~~~~~L~~-~l~-~~L~~L~Ls~-n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~ 415 (507)
.|.+.+|. + ..+.. ++. ..+++|++++ |.++.... +++....+|++|||++|+|+.
T Consensus 158 ~L~L~~N~-i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 158 ILWLNKNG-I-QEIHNSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEECCSSC-C-CEECTTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSCCCC
T ss_pred hhcccccc-c-cCCChhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCCcCc
Confidence 34433332 0 01111 111 5577777764 55554321 122334567778888777753
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.2e-07 Score=92.45 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=79.1
Q ss_pred cccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCcc-EEECcCCCCCCcccc
Q 010572 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS-ILDLSGNSIGGWLSK 336 (507)
Q Consensus 258 ~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~-~LdLS~N~L~~~l~~ 336 (507)
.++.|+++.+++.. ++. .++..+++|++|+|++|++...... ..+.+.+++. .+.++.|+|+...+.
T Consensus 31 ~l~~L~Ls~N~i~~-----i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 31 NAIELRFVLTKLRV-----IQK---GAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCSEEEEESCCCSE-----ECT---TSSTTCTTCCEEEEECCTTCCEECT----TSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCEEEccCCcCCC-----cCH---HHHcCCCCCCEEECcCCCCCCccCh----hHhhcchhhhhhhcccCCcccccCch
Confidence 35666666555422 111 2345566677777777765332111 0112334444 345556666642211
Q ss_pred cccCCchhhcccCCCcCccccccch-hHHHHHHhhhc-CCCcEEEecc-CCCCchhHHHHHHhhcC-CCCCCEEeccCCC
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG-TSVQVLNIGA-IGLGSSGFRVLQDGVTK-ELKLVNINISKNR 412 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~-~~L~~L~Ls~-n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~ 412 (507)
++...++|+.|.+.++. ...... .... ..+..|++.+ +.++...... +.. ...+++|+|++|.
T Consensus 99 --------~f~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~----f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 99 --------AFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNS----FVGLSFESVILWLNKNG 165 (350)
T ss_dssp --------SBCCCTTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTS----STTSBSSCEEEECCSSC
T ss_pred --------hhhhccccccccccccccccCCch-hhcccchhhhhhhccccccccccccc----hhhcchhhhhhcccccc
Confidence 44555556666655543 000000 0011 3445555543 3444322111 111 1246677777777
Q ss_pred CChHHHHHHHhhCCCCCCccEEEccC-CCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 413 GGVETAKFLSKLMPLAPELVEVNAGY-NLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 413 i~~~g~~~L~~~L~~n~~L~~L~Ls~-N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+.-... .-...+|++|+++. |.++.-.. .++.. ..+|+.|||++|.+
T Consensus 166 i~~i~~~-----~f~~~~L~~l~l~~~n~l~~i~~----~~f~~-l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 166 IQEIHNS-----AFNGTQLDELNLSDNNNLEELPN----DVFHG-ASGPVILDISRTRI 214 (350)
T ss_dssp CCEECTT-----SSTTEEEEEEECTTCTTCCCCCT----TTTTT-EECCSEEECTTSCC
T ss_pred ccCCChh-----hccccchhHHhhccCCcccCCCH----HHhcc-CcccchhhcCCCCc
Confidence 6542111 11223466677653 55543110 11221 24577777777766
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.98 E-value=9.1e-06 Score=74.45 Aligned_cols=119 Identities=12% Similarity=0.008 Sum_probs=73.0
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
-+.+++++|+|+.-.. .+ ...|++|+|++|.|++..+. .+...
T Consensus 14 ~~~l~~~~n~l~~iP~-----~~---~~~L~~L~Ls~N~l~~~~~~--------~~~~l--------------------- 56 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-----GI---PTDKQRLWLNNNQITKLEPG--------VFDHL--------------------- 56 (174)
T ss_dssp SSEEECCSSCCSSCCS-----CC---CTTCSEEECCSSCCCCCCTT--------TTTTC---------------------
T ss_pred CcEEEeCCCCCCccCC-----Cc---CCCCcEEEeCCCCccccCHH--------HhcCC---------------------
Confidence 4678888888765321 11 26788888888888753221 11110
Q ss_pred hcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh--HHHH
Q 010572 371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE--SLTI 448 (507)
Q Consensus 371 l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~--g~~~ 448 (507)
..|++|+|++|+|+.... ..+....+|++|+|++|.|+.-.. .++...++|+.|+|++|.+.-. .+..
T Consensus 57 --~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 57 --VNLQQLYFNSNKLTAIPT----GVFDKLTQLTQLDLNDNHLKSIPR----GAFDNLKSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp --TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCBCTTBGGGHH
T ss_pred --cCCCEEECCCCCCCccCh----hHhCCcchhhEEECCCCccceeCH----HHhccccCCCEEEeCCCCcccccccHHH
Confidence 457778888888764211 123345678888888888874321 2344557899999999988743 3555
Q ss_pred HHHHHhcC
Q 010572 449 ICSALKVA 456 (507)
Q Consensus 449 L~~aL~~~ 456 (507)
+..-++..
T Consensus 127 l~~~~~~~ 134 (174)
T 2r9u_A 127 LRNWVADH 134 (174)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 55555554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=78.29 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=55.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc-EEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELV-EVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~-~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|++|+|++|.++..+.. +.....+|++|+|++| +..-+.. ++..+++|+ .|++.. .+..-+. .
T Consensus 226 ~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~----~ 291 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEF----G 291 (329)
T ss_dssp TTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECT----T
T ss_pred CCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEch----h
Confidence 6789999998888766533 3344567999999888 5543332 344557788 999987 4443221 2
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
|+... .+|+.|+|.+|.+
T Consensus 292 aF~~c-~~L~~l~l~~n~i 309 (329)
T 3sb4_A 292 AFMGC-DNLRYVLATGDKI 309 (329)
T ss_dssp TTTTC-TTEEEEEECSSCC
T ss_pred hhhCC-ccCCEEEeCCCcc
Confidence 34432 5799999988876
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=73.40 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=30.9
Q ss_pred HhCCCCCCEEEccC-CCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 285 LSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 285 L~~~~sL~~L~LS~-N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
|..+++|++|+|++ |.|+...... +....+|+.|+|++|.|++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEE
T ss_pred CCCCCCeeEEEccCCCCCCCcChhH-----hccccCCCEEECCCCcccee
Confidence 56677888888885 8887654321 24467888888888888763
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=71.20 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=10.2
Q ss_pred CCCCccEEECcCCCCCC
Q 010572 316 ASSSLSILDLSGNSIGG 332 (507)
Q Consensus 316 ~~~~L~~LdLS~N~L~~ 332 (507)
+.+.|++|+||+|.|++
T Consensus 168 ~l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR 184 (267)
T ss_dssp HCTTCCEEECTTSCCCC
T ss_pred hCCCCCEEECCCCCCCC
Confidence 34566666666666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00053 Score=68.85 Aligned_cols=84 Identities=21% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCCcEEEecc-CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGA-IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~-n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|++|+|++ |.|+... ...+....+|++|+|++|.|+...... +...++|+.|+|++|.|+.-.. .
T Consensus 31 ~~L~~L~l~~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~----~ 98 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLRFVAPDA----FHFTPRLSRLNLSFNALESLSW----K 98 (347)
T ss_dssp SCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCCEECTTG----GGSCSCCCEEECCSSCCSCCCS----T
T ss_pred CCeeEEEccCCCCCCCcC----hhHhccccCCCEEECCCCccceeCHHH----hcCCcCCCEEeCCCCccceeCH----H
Confidence 3466667764 6665422 122344556777777777665533222 2334567777777777653110 1
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
.+.. -+|+.|+|.+|.|
T Consensus 99 ~~~~--~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQG--LSLQELVLSGNPL 115 (347)
T ss_dssp TTCS--CCCCEEECCSSCC
T ss_pred Hccc--CCceEEEeeCCCc
Confidence 1111 1267777777766
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0026 Score=62.61 Aligned_cols=85 Identities=25% Similarity=0.118 Sum_probs=52.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh---HHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE---SLTII 449 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~---g~~~L 449 (507)
+.|++|+|++|.|+... .+...+....+|++|+|++|.|++. ..+.. ++.. +|++|+|++|++... .....
T Consensus 170 ~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp TTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccC-CcceEEccCCcCccccCcchhHH
Confidence 68899999999987632 1222333466889999999988765 12222 2222 788999999998641 11222
Q ss_pred HHHHhcCCCCccEEE
Q 010572 450 CSALKVAKGHLQRLD 464 (507)
Q Consensus 450 ~~aL~~~~~~L~~Ld 464 (507)
..++.. -++|+.||
T Consensus 244 ~~il~~-~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRER-FPKLLRLD 257 (267)
T ss_dssp HHHHHH-CTTCCEES
T ss_pred HHHHHH-CcccCeEC
Confidence 233332 25688774
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.014 Score=58.21 Aligned_cols=77 Identities=9% Similarity=-0.085 Sum_probs=47.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCC-EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV-NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~-~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|++|+|+.| +...|-. +......|+ .|+|.+ .++.-+. .++..+++|+.|+++.|.+..-+. .
T Consensus 250 ~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~----~aF~~c~~L~~l~l~~n~i~~I~~----~ 315 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEF----GAFMGCDNLRYVLATGDKITTLGD----E 315 (329)
T ss_dssp TTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECT----TTTTTCTTEEEEEECSSCCCEECT----T
T ss_pred CCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEch----hhhhCCccCCEEEeCCCccCccch----h
Confidence 47888888876 6554422 234455688 888887 4443332 244556788999988888865332 2
Q ss_pred HHhcCCCCccEEE
Q 010572 452 ALKVAKGHLQRLD 464 (507)
Q Consensus 452 aL~~~~~~L~~Ld 464 (507)
++.. ..+|+.|.
T Consensus 316 aF~~-~~~L~~ly 327 (329)
T 3sb4_A 316 LFGN-GVPSKLIY 327 (329)
T ss_dssp TTCT-TCCCCEEE
T ss_pred hhcC-Ccchhhhc
Confidence 3432 24677765
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.044 Score=56.68 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=8.9
Q ss_pred CCCCccEEEeecCCC
Q 010572 223 NSETLASLEFLHCKL 237 (507)
Q Consensus 223 ~~~~L~~LdLs~~~l 237 (507)
++.+|++++|.++.+
T Consensus 178 ~c~~L~~l~l~~n~l 192 (401)
T 4fdw_A 178 YCYNLKKADLSKTKI 192 (401)
T ss_dssp TCTTCCEEECTTSCC
T ss_pred CcccCCeeecCCCcc
Confidence 445666666665544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.045 Score=56.56 Aligned_cols=86 Identities=9% Similarity=0.076 Sum_probs=48.7
Q ss_pred CCCcEEEeccCCCCchhHHHHH-HhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQ-DGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~-~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|+++++.+|.+.......+. .+.....+|+.++|.+ .+..-+.. ++..+++|+.|.|..| +..-|. .
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~----aF~~c~~L~~l~lp~~-l~~I~~----~ 340 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG----LLGGNRKVTQLTIPAN-VTQINF----S 340 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT----TTTTCCSCCEEEECTT-CCEECT----T
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh----hhcCCCCccEEEECcc-ccEEcH----H
Confidence 4677777777665421111111 1233455688888874 34443322 3445577888888665 432111 2
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
|+. .|+|+.+++.+|..
T Consensus 341 aF~--~~~L~~l~l~~n~~ 357 (401)
T 4fdw_A 341 AFN--NTGIKEVKVEGTTP 357 (401)
T ss_dssp SSS--SSCCCEEEECCSSC
T ss_pred hCC--CCCCCEEEEcCCCC
Confidence 333 35899999999875
|
| >4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.94 E-value=0.48 Score=38.96 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=31.0
Q ss_pred CChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCccHHHHHHHhcccCcccCCCCCCcHHHH
Q 010572 32 LPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQR 110 (507)
Q Consensus 32 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~w~~~~~~~~~~~w~~~ 110 (507)
.|=+++.-|+++-+|.-|..++..-| .+ ++-| .-|++.|+-.-+.... .++.+|+++
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP-----~L~~dTd----------------eLWk~~c~rdF~~~~p-~e~esWRel 70 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNH-----VLIEETD----------------QLWKVHCHRDFKEERP-EEYESWREM 70 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC-----------CCH----------------HHHHHHC----CCSCC-CSSSCHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCc-----ccchhhH----------------HHHHHHHHhHCcccCC-CCCCCHHHH
Confidence 45566777777888888888887777 45 2222 3599999998887433 337899999
Q ss_pred H
Q 010572 111 Y 111 (507)
Q Consensus 111 ~ 111 (507)
|
T Consensus 71 Y 71 (97)
T 4hfx_A 71 Y 71 (97)
T ss_dssp H
T ss_pred H
Confidence 9
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=84.01 E-value=0.6 Score=46.30 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=43.5
Q ss_pred CcccCCChhhHHHHHhcCCchhhh-hhhccCCcccc--CCC-CCCCcccccCcccccCCCccHHHHHHHhcccCc--ccC
Q 010572 27 PYVYELPADLFDILLTCLPPLALQ-KLQTKMPFRDG--DDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG--FTD 100 (507)
Q Consensus 27 p~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~w~~--~~~ 100 (507)
+.+..||.|++..|+.+|||..|- .+. .-|. ..+ .|+ .-|++.|..+|-. ...
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~----~VCk~Wr~l~~~~-----------------~~w~~~~~~~g~~~~~~~ 107 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACR----LVCLRWKELVDGA-----------------PLWLLKCQQEGLVPEGSA 107 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGG----GTCHHHHHHHTSH-----------------HHHHHHHHHTTCCCC---
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHH----HHhHHHHHHhcCh-----------------HHHHHHhhccCccccccc
Confidence 457899999999999999998553 221 1110 001 122 3499999888543 222
Q ss_pred CCCCCcHHHHHHHHHHhh
Q 010572 101 QIEPVDWQQRYWEAHVQG 118 (507)
Q Consensus 101 ~~~~~~w~~~~~e~hl~~ 118 (507)
...+.+||++|..++..-
T Consensus 108 ~~~~~~Wk~~y~~~~~gR 125 (297)
T 2e31_A 108 DEERDHWQQFYFLSKRRR 125 (297)
T ss_dssp --CCSCHHHHHHHHHHCC
T ss_pred CCCCCChhhhheheeccc
Confidence 212578999997775443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 507 | ||||
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 11/90 (12%), Positives = 30/90 (33%)
Query: 402 KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQ 461
L + ++ + L+ + L E++ N + + + +++ L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 462 RLDLTGNNWELQPSHVSMLSEFRHNGLPIL 491
+L L W + E L ++
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433
+Q L+I L + + L + + + + K +S + + P L E
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470
+N N + + + L+ +Q+L L
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.004
Identities = 23/182 (12%), Positives = 43/182 (23%), Gaps = 4/182 (2%)
Query: 151 YEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFE 210
+E + C ++ + L W++
Sbjct: 263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322
Query: 211 EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 270
A C L L + G+ + + L +
Sbjct: 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382
Query: 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330
++ SS L + L + SL L L + L + S+ + L L L
Sbjct: 383 DSSCSS----LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438
Query: 331 GG 332
Sbjct: 439 SE 440
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.93 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.92 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.91 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.86 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.66 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.64 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.6 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.58 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.57 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.5 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.0 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.9 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.87 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.87 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.86 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.85 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.82 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.82 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.77 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.7 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.69 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.59 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.53 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.45 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.41 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.39 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.33 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.32 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.3 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.15 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.77 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.71 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.31 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.3 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.2 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 97.19 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.11 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.16 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.3e-25 Score=224.42 Aligned_cols=310 Identities=16% Similarity=0.140 Sum_probs=224.1
Q ss_pred eeEEEEecc-Ccchhhhhhhhc-cCCcCeeeccccc-ChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhcc
Q 010572 175 YARCLRLQN-ALCVEETCQLLR-ESKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251 (507)
Q Consensus 175 ~v~~L~L~~-~l~~~~~~~ll~-~~~L~~L~Ls~~~-~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~ 251 (507)
.+++|+++. -+....+..+++ ..++++|+|+++. ++.+++.++.++. ..++|++|||++|.+++.++..++..|..
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~-~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHh-cCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 367777763 112222233333 5678999998775 5678888887774 56899999999999999999999998876
Q ss_pred CCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCC--------------
Q 010572 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS-------------- 317 (507)
Q Consensus 252 ~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~-------------- 317 (507)
.. +.++.|+++.+.+.+.. ...+++++..+++|++|+|++|.+++.|+..+...+....
T Consensus 82 ~~---~~L~~L~L~~n~it~~~----~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 154 (460)
T d1z7xw1 82 PS---CKIQKLSLQNCCLTGAG----CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 154 (460)
T ss_dssp TT---CCCCEEECTTSCCBGGG----HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred CC---CCCCEEECCCCCccccc----cccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence 43 46899998877654321 1246788999999999999999999999888877664332
Q ss_pred --------------CCccEEECcCCCCCCcc--------ccc----------ccCC-------chhhccc----------
Q 010572 318 --------------SSLSILDLSGNSIGGWL--------SKY----------DRSG-------PLFSLGA---------- 348 (507)
Q Consensus 318 --------------~~L~~LdLS~N~L~~~l--------~~~----------~~~~-------l~~~L~~---------- 348 (507)
..++.++++.+.+.... ... .+.. ....+..
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 234 (460)
T d1z7xw1 155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234 (460)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchh
Confidence 45666666655543100 000 0000 0000011
Q ss_pred -------------------CCCcCccccccch------------------------------------------------
Q 010572 349 -------------------GKSLQSLRLLNLS------------------------------------------------ 361 (507)
Q Consensus 349 -------------------~~~L~~L~ll~l~------------------------------------------------ 361 (507)
...++.|.+.++.
T Consensus 235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L 314 (460)
T d1z7xw1 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 314 (460)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred hccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence 1122222221110
Q ss_pred ------------hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcC-CCCCCEEeccCCCCChHHHHHHHhhCC
Q 010572 362 ------------HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMP 426 (507)
Q Consensus 362 ------------~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~i~~~g~~~L~~~L~ 426 (507)
.++..++.++. ++|++|+|++|.|+++|+..+++++.. +..|++|+|++|.|+++|+..|++++.
T Consensus 315 ~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 394 (460)
T d1z7xw1 315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 394 (460)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence 34455555544 678999999999999999999998865 667999999999999999999999988
Q ss_pred CCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCeEEcC
Q 010572 427 LAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILILP 494 (507)
Q Consensus 427 ~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i~~~~ 494 (507)
.+++|++|+|++|.|+++|+..++++++.+.+.|+.|++.+|.+ ..+..+.+.++.++.|.|.|+.
T Consensus 395 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~--~~~~~~~l~~l~~~~~~l~~~~ 460 (460)
T d1z7xw1 395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW--SEEMEDRLQALEKDKPSLRVIS 460 (460)
T ss_dssp HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC--CHHHHHHHHHHHHHCTTSEEEC
T ss_pred cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC--CHHHHHHHHHHHHhCCCCEEeC
Confidence 88999999999999999999999999998878899999999986 7788899999999999887763
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.92 E-value=6e-24 Score=214.56 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=184.1
Q ss_pred cCCcCeeeccccc-ChhhHHHHHHHHhhCCCCccEEEeecCCCC------hhHHHHHHHHhccCCcccccccceeccccc
Q 010572 196 ESKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLS------PSFVEGICRSLCSKRKRIHKIENLSIDISS 268 (507)
Q Consensus 196 ~~~L~~L~Ls~~~-~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls------~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~ 268 (507)
...++.|+|+++. .+.++..++..+. ..++|+.|+++++.++ +.++..++.++... ..++.|+++.+.
T Consensus 30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~----~~L~~L~L~~n~ 104 (344)
T d2ca6a1 30 DDSVKEIVLSGNTIGTEAARWLSENIA-SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC----PKLHTVRLSDNA 104 (344)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTT-TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC----TTCCEEECCSCC
T ss_pred CCCCCEEECcCCcCCHHHHHHHHHHHH-hCCCCCEEECCCCcccccccccchHHHHHHHHHhhC----CCcccccccccc
Confidence 4456667776653 4555666655543 3366777777665443 33445555555432 246666666554
Q ss_pred cccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhc--------cCCCCccEEECcCCCCCCcccccccC
Q 010572 269 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL--------EASSSLSILDLSGNSIGGWLSKYDRS 340 (507)
Q Consensus 269 ~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~--------~~~~~L~~LdLS~N~L~~~l~~~~~~ 340 (507)
+.+.+ ...+..++..+++|++|+|++|.+++.|+..++.++. ...+.|+.+++++|.++.... .
T Consensus 105 i~~~~----~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~----~ 176 (344)
T d2ca6a1 105 FGPTA----QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM----K 176 (344)
T ss_dssp CCTTT----HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH----H
T ss_pred ccccc----ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc----c
Confidence 32211 1235556666677777777777777776666655542 123567777777776663211 1
Q ss_pred CchhhcccCCCcCccccccch---hH-HHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCC
Q 010572 341 GPLFSLGAGKSLQSLRLLNLS---HI-AASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 414 (507)
Q Consensus 341 ~l~~~L~~~~~L~~L~ll~l~---~~-~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~ 414 (507)
.++.++..+..++.|.+..+. .+ ...+..++. .+|++|+|++|.+++.|+..|+.++..+.+|++|+|++|.|+
T Consensus 177 ~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~ 256 (344)
T d2ca6a1 177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 256 (344)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence 122355666667777666654 22 233455554 778999999999999999999998888888999999999999
Q ss_pred hHHHHHHHhhCCC--CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 415 VETAKFLSKLMPL--APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 415 ~~g~~~L~~~L~~--n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
+.|+..++.++.. +++|++|++++|.|+++|+..|+++++....+|+.|+|++|.+...+++.+.+.++...
T Consensus 257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~~l~~~~~~ 330 (344)
T d2ca6a1 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330 (344)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred chhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHHHHHHHHHH
Confidence 9999999888765 45689999999999999999999988754467999999999885556666666554443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.91 E-value=6.4e-24 Score=214.36 Aligned_cols=294 Identities=15% Similarity=0.115 Sum_probs=224.0
Q ss_pred CeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcch-
Q 010572 200 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV- 278 (507)
Q Consensus 200 ~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~- 278 (507)
+.|.+.+ .+.++.+.+...+.. ..+|++|+|++|.++++++..++..|... ..++.+.++.+.+... ....+
T Consensus 8 ~~L~l~~-~~~e~~~~l~~~L~~-~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~----~~L~~l~l~~~~~~~~-~~~~~~ 80 (344)
T d2ca6a1 8 KSLKLDA-ITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASK----KDLEIAEFSDIFTGRV-KDEIPE 80 (344)
T ss_dssp CCCEESS-CCSHHHHTTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSC-GGGSHH
T ss_pred CCCCCCC-CCHHHHHHHHHHHhh-CCCCCEEECcCCcCCHHHHHHHHHHHHhC----CCCCEEECCCCccccc-ccccch
Confidence 3444433 244567777666654 48899999999999999999999988754 3577787765432111 11111
Q ss_pred --HHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCch-----hhcccCCC
Q 010572 279 --VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL-----FSLGAGKS 351 (507)
Q Consensus 279 --~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~-----~~L~~~~~ 351 (507)
..+.+++..+++|++|+|++|.+++.++..++..+.. .++|+.|+|++|.|+......-+..+. ........
T Consensus 81 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~ 159 (344)
T d2ca6a1 81 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 159 (344)
T ss_dssp HHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhCCCcccccccccccccccccchhhhhcc-cccchheecccccccccccccccccccccccccccccCcc
Confidence 2367888999999999999999999999999988865 499999999999998421110000000 01233455
Q ss_pred cCccccccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHH-HHHhhcCCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 352 LQSLRLLNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRV-LQDGVTKELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 352 L~~L~ll~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~-L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
++.|...++. .++..++.++. .+|++|+|++|+|++.|... +..++..+.+|++|+|++|.+++.|+..++.++
T Consensus 160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l 239 (344)
T d2ca6a1 160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239 (344)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred cceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence 6666666554 56677777776 89999999999999999865 778888899999999999999999999999999
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhcC-CCCccEEEecCCCCCCCccHHHHHHHHHH-cCCCeEEcCCCCCCCCCC
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKVA-KGHLQRLDLTGNNWELQPSHVSMLSEFRH-NGLPILILPTLQALDVPY 503 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~-~~~L~~LdL~~N~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~ 503 (507)
..+++|++|+|++|.|+++|+..++++++.. ..+|++|+|++|. ++.+++..+.+..+ +.+.+..+ +.++...+-
T Consensus 240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~--i~~~~~~~l~~~l~~~~~~L~~L-~l~~N~~~~ 316 (344)
T d2ca6a1 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE--IELDAVRTLKTVIDEKMPDLLFL-ELNGNRFSE 316 (344)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC--CBHHHHHHHHHHHHHHCTTCCEE-ECTTSBSCT
T ss_pred cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc--CChHHHHHHHHHHHccCCCCCEE-ECCCCcCCC
Confidence 9999999999999999999999999999863 4689999999998 58899998877765 45566444 666665544
Q ss_pred C
Q 010572 504 D 504 (507)
Q Consensus 504 ~ 504 (507)
|
T Consensus 317 ~ 317 (344)
T d2ca6a1 317 E 317 (344)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.7e-21 Score=198.28 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=95.9
Q ss_pred CcCeeeccccc-ChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 198 KLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 198 ~L~~L~Ls~~~-~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
.|++||++++. ++.++..+++.+ ++++.|+|++|.++++++..|+.+|+.. ..++.|+++.+.+.+.+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l----~~l~~L~L~~~~i~~~~~~~l~~~L~~~----~~L~~LdLs~N~i~~~~--- 71 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVN----PALAELNLRSNELGDVG--- 71 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHH---
T ss_pred CCCEEEeeCCcCChHHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHHHHhcC----CCCCEEECcCCcCChHH---
Confidence 47899998875 567777777665 7899999999999999999999998864 35889988876542210
Q ss_pred chHHHHHHHhC-CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 277 VVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 277 l~~~L~~~L~~-~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
...++..+.. .++|++|+|++|++++.|+..++.++.. .++|++|+|++|.|+
T Consensus 72 -~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~-~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 72 -VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT-LPTLQELHLSDNLLG 125 (460)
T ss_dssp -HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS-CTTCCEEECCSSBCH
T ss_pred -HHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhc-cccccccccccccch
Confidence 0124555554 3589999999999999999999888754 599999999999987
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.66 E-value=4e-16 Score=141.73 Aligned_cols=130 Identities=14% Similarity=0.134 Sum_probs=72.8
Q ss_pred HHHHHhCCCCCCEEEccC-CCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccccc
Q 010572 281 LVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (507)
Q Consensus 281 L~~~L~~~~sL~~L~LS~-N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~ 359 (507)
+......+++|++|+|++ +.++++|+..++.++..+ ++|++|+|++|.|+
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~---------------------------- 57 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS---------------------------- 57 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB----------------------------
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC-Cccceeeccccccc----------------------------
Confidence 344455567788888876 457777777777776543 55666666555554
Q ss_pred chhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 360 LSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 360 l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
+.|+..++++|..+.+|++|+|++|.|+++|+..|++++..|++|++|++++|
T Consensus 58 ---------------------------~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 58 ---------------------------DSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp ---------------------------HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred ---------------------------hhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence 44444444445445555555555555555555555555555555555555544
Q ss_pred ---CCChhHHHHHHHHHhcCCCCccEEEecC
Q 010572 440 ---LMPLESLTIICSALKVAKGHLQRLDLTG 467 (507)
Q Consensus 440 ---~l~~~g~~~L~~aL~~~~~~L~~LdL~~ 467 (507)
.+|++|+..|+++|+.+ .+|++|+++.
T Consensus 111 ~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~ 140 (167)
T d1pgva_ 111 RQSVLGNQVEMDMMMAIEEN-ESLLRVGISF 140 (167)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-SSCCEEECCC
T ss_pred cCCCccHHHHHHHHHHHHhC-CCccEeeCcC
Confidence 24445555555555544 3455555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.64 E-value=9.8e-16 Score=139.09 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=110.9
Q ss_pred CCCcEEEeccC-CCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
++|++|+|+++ .++++|+..++.++..+.+|++|+|++|.++++++..+++++..+++|++|+|++|.|+++|+..|++
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 78999999974 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEecCCCC-CCCccHHHHHHHHHHcCCCeEEc
Q 010572 452 ALKVAKGHLQRLDLTGNNW-ELQPSHVSMLSEFRHNGLPILIL 493 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~-~~~~~~~~~l~~~~~~~~~i~~~ 493 (507)
+|+.+ .+|++|+|++|.+ .++++++..++++.+.++.|.-+
T Consensus 95 aL~~n-~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l 136 (167)
T d1pgva_ 95 STLVT-QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 136 (167)
T ss_dssp HTTTT-CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHhC-CcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEe
Confidence 99987 6899999999876 46888999999999988887543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.60 E-value=3.9e-15 Score=134.51 Aligned_cols=132 Identities=12% Similarity=0.203 Sum_probs=78.0
Q ss_pred HHHHHHhCCCCCCEEEccC-CCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccc
Q 010572 280 ELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358 (507)
Q Consensus 280 ~L~~~L~~~~sL~~L~LS~-N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll 358 (507)
.+..+...+++|++|+|++ +.+++.|+..++.++..+ ++|++|+|++|.++.
T Consensus 8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n-~~L~~L~Ls~n~l~~-------------------------- 60 (166)
T d1io0a_ 8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSND-------------------------- 60 (166)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCH--------------------------
T ss_pred HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC-CccCeeeccCCcccH--------------------------
Confidence 3455566778888888887 568888888888887554 667666666666653
Q ss_pred cchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec--cCCCCChHHHHHHHhhCCCCCCccEE
Q 010572 359 NLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI--SKNRGGVETAKFLSKLMPLAPELVEV 434 (507)
Q Consensus 359 ~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL--s~N~i~~~g~~~L~~~L~~n~~L~~L 434 (507)
.++..++.++. .+++.|++++|.+++.|+..+++++..+.+|+.++| +.|.++++|+..|+.++..|++|++|
T Consensus 61 ---~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L 137 (166)
T d1io0a_ 61 ---PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 137 (166)
T ss_dssp ---HHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---HHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEE
Confidence 12233333333 455555555555555555555555555555554333 34455555555555555555555555
Q ss_pred EccCCCC
Q 010572 435 NAGYNLM 441 (507)
Q Consensus 435 ~Ls~N~l 441 (507)
++++|..
T Consensus 138 ~l~~~~~ 144 (166)
T d1io0a_ 138 GYHFTQQ 144 (166)
T ss_dssp ECCCSSH
T ss_pred eCcCCCC
Confidence 5555443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.58 E-value=5.2e-15 Score=133.64 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=117.1
Q ss_pred hHHHHHHHHhccCCCCccEEECcC-CCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEe
Q 010572 304 DFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNI 380 (507)
Q Consensus 304 ~g~~~L~~~L~~~~~~L~~LdLS~-N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~L 380 (507)
+++..+...+..+.+.|++|+|++ +.|+. .+...++.++. ++|++|+|
T Consensus 3 ~~i~~~l~~~~~~~~~L~~L~L~~~~~i~~-----------------------------~~~~~l~~al~~n~~L~~L~L 53 (166)
T d1io0a_ 3 TDVEETLKRIQNNDPDLEEVNLNNIMNIPV-----------------------------PTLKACAEALKTNTYVKKFSI 53 (166)
T ss_dssp CCHHHHHHHHHTTCTTCCEEECTTCTTCCH-----------------------------HHHHHHHHHHTTCCSCCEEEC
T ss_pred ccHHHHHHHHHhcCCCCcEEEcCCCCCCCH-----------------------------HHHHHHHHHHhcCCccCeeec
Confidence 344555556666779999999997 56764 34556677765 78999999
Q ss_pred ccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc--cCCCCChhHHHHHHHHHhcCCC
Q 010572 381 GAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA--GYNLMPLESLTIICSALKVAKG 458 (507)
Q Consensus 381 s~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L--s~N~l~~~g~~~L~~aL~~~~~ 458 (507)
++|.++++|+..|++++..+.+|+.+++++|.++++|+..+++++..+++|++++| +.|.++++|+..|+++++.+ .
T Consensus 54 s~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n-~ 132 (166)
T d1io0a_ 54 VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-T 132 (166)
T ss_dssp TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-S
T ss_pred cCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhC-C
Confidence 99999999999999999999999999999999999999999999999999987555 67899999999999999987 5
Q ss_pred CccEEEecCCCC
Q 010572 459 HLQRLDLTGNNW 470 (507)
Q Consensus 459 ~L~~LdL~~N~~ 470 (507)
+|++|++..+..
T Consensus 133 ~L~~L~l~~~~~ 144 (166)
T d1io0a_ 133 TLLKFGYHFTQQ 144 (166)
T ss_dssp SCCEEECCCSSH
T ss_pred CcCEEeCcCCCC
Confidence 899999987763
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.57 E-value=7.3e-17 Score=159.67 Aligned_cols=292 Identities=14% Similarity=0.072 Sum_probs=184.9
Q ss_pred hhhhhhhhhhhhhhhccCCcccccchhhhhccchhhccccc--ccccccccceecccCc--eeEEEEeccCcchh--hhh
Q 010572 118 GCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHL--ACDYSKLSYHCQQFGH--YARCLRLQNALCVE--ETC 191 (507)
Q Consensus 118 ~cl~E~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~--~~~l~~l~~~c~~~~~--~v~~L~L~~~l~~~--~~~ 191 (507)
-|++ +|++++.+||+++.+ |. .+++|. ...+||. | -||.|...++ +|+.|+|.+.--.+ .+.
T Consensus 2 ~c~~--~e~~aLl~~k~~~~~---~~-~l~sW~-~~~d~C~~~w-----~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp 69 (313)
T d1ogqa_ 2 LCNP--QDKQALLQIKKDLGN---PT-TLSSWL-PTTDCCNRTW-----LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69 (313)
T ss_dssp CSCH--HHHHHHHHHHHHTTC---CG-GGTTCC-TTSCTTTTCS-----TTEEECCSSSCCCEEEEEEECCCCSSCEECC
T ss_pred CCCH--HHHHHHHHHHHHCCC---CC-cCCCCC-CCCCCCCCcC-----CCeEEeCCCCcEEEEEEECCCCCCCCCCCCC
Confidence 4788 999999999999887 64 688895 4569995 8 3899986543 89999998633222 232
Q ss_pred -hhhccCCcCeeeccc-ccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccccc
Q 010572 192 -QLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF 269 (507)
Q Consensus 192 -~ll~~~~L~~L~Ls~-~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~ 269 (507)
++....+|++|+|++ +...+. ++.-++++.+|++|+|++|.+.+.....+. ....++.+.++.+.+
T Consensus 70 ~~l~~L~~L~~L~Ls~~N~l~g~----iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~--------~~~~L~~l~l~~N~~ 137 (313)
T d1ogqa_ 70 SSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAIPDFLS--------QIKTLVTLDFSYNAL 137 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEECCGGGG--------GCTTCCEEECCSSEE
T ss_pred hHHhcCccccccccccccccccc----cccccccccccchhhhcccccccccccccc--------chhhhcccccccccc
Confidence 456678899999985 322211 223346788999999999998754332210 113466666665553
Q ss_pred ccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccC
Q 010572 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG 349 (507)
Q Consensus 270 le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~ 349 (507)
.. .+...+..++.|+++++++|.+.+.....+ ......++.+++++|.+++..+. .+...
T Consensus 138 ~~--------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~----~~l~~l~~~l~~~~n~l~~~~~~--------~~~~l 197 (313)
T d1ogqa_ 138 SG--------TLPPSISSLPNLVGITFDGNRISGAIPDSY----GSFSKLFTSMTISRNRLTGKIPP--------TFANL 197 (313)
T ss_dssp ES--------CCCGGGGGCTTCCEEECCSSCCEEECCGGG----GCCCTTCCEEECCSSEEEEECCG--------GGGGC
T ss_pred cc--------cCchhhccCcccceeecccccccccccccc----ccccccccccccccccccccccc--------ccccc
Confidence 22 122346888999999999999986644322 22224458999999999864432 12111
Q ss_pred CCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCC
Q 010572 350 KSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPL 427 (507)
Q Consensus 350 ~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~ 427 (507)
....+....+. ..+.++..+. ..++.|++++|.+...- ..+.....|++|+|++|++++..+..++ .
T Consensus 198 -~~~~l~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-----~~~~~~~~L~~L~Ls~N~l~g~iP~~l~----~ 266 (313)
T d1ogqa_ 198 -NLAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGTLPQGLT----Q 266 (313)
T ss_dssp -CCSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEECCCGGGG----G
T ss_pred -ccccccccccc-ccccccccccccccccccccccccccccc-----cccccccccccccCccCeecccCChHHh----C
Confidence 11222222221 1111222222 77899999998875321 1244567899999999998765544443 3
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 428 APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 428 n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++|+.|+|++|.|...-.+ +. +-.+|+.+++++|++
T Consensus 267 L~~L~~L~Ls~N~l~g~iP~-----~~-~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 267 LKFLHSLNVSFNNLCGEIPQ-----GG-NLQRFDVSAYANNKC 303 (313)
T ss_dssp CTTCCEEECCSSEEEEECCC-----ST-TGGGSCGGGTCSSSE
T ss_pred CCCCCEEECcCCcccccCCC-----cc-cCCCCCHHHhCCCcc
Confidence 47899999999988632110 11 123677788888874
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.1e-13 Score=135.46 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=41.3
Q ss_pred CCCcEEEeccC-CCCchhHHHHHHhhcCCCCCCEEeccC-CCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHH
Q 010572 373 TSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINISK-NRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~~LdLs~-N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~ 450 (507)
+.|++|+|++| .+++.+...++ ..++|++|+|++ +.|++++...++ ..|+|++|+++++ ++++++..++
T Consensus 175 ~~L~~L~L~~~~~itd~~~~~l~----~~~~L~~L~L~~C~~i~~~~l~~L~----~~~~L~~L~l~~~-~~d~~l~~l~ 245 (284)
T d2astb2 175 PNLVHLDLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCYDIIPETLLELG----EIPTLKTLQVFGI-VPDGTLQLLK 245 (284)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGG----GCTTCCEEECTTCTTCCGGGGGGGG----GCTTCCEEECTTS-SCTTCHHHHH
T ss_pred ccccccccccccCCCchhhhhhc----ccCcCCEEECCCCCCCChHHHHHHh----cCCCCCEEeeeCC-CCHHHHHHHH
Confidence 45666666664 35665554443 244566666666 356666554443 2356666666665 6666666665
Q ss_pred HHH
Q 010572 451 SAL 453 (507)
Q Consensus 451 ~aL 453 (507)
+.+
T Consensus 246 ~~l 248 (284)
T d2astb2 246 EAL 248 (284)
T ss_dssp HHS
T ss_pred HhC
Confidence 544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.4e-12 Score=125.82 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=131.8
Q ss_pred CccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccC-CCCCch
Q 010572 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRD 304 (507)
Q Consensus 226 ~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~-N~L~~~ 304 (507)
+|++|||++|.++++.+..++... ..++.|.+.++.+ +......+..+++|++|+|++ +.+++.
T Consensus 47 ~L~~LdLs~~~i~~~~l~~l~~~c-------~~L~~L~L~~~~l--------~~~~~~~l~~~~~L~~L~Ls~c~~itd~ 111 (284)
T d2astb2 47 RVQHMDLSNSVIEVSTLHGILSQC-------SKLQNLSLEGLRL--------SDPIVNTLAKNSNLVRLNLSGCSGFSEF 111 (284)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTB-------CCCSEEECTTCBC--------CHHHHHHHTTCTTCSEEECTTCBSCCHH
T ss_pred CCCEEECCCCccCHHHHHHHHHhC-------CCcccccccccCC--------CcHHHHHHhcCCCCcCcccccccccccc
Confidence 566666666666655555443321 2355555444332 123345567788999999999 589999
Q ss_pred HHHHHHHHhccCCCCccEEECcCC-CCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccC
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAI 383 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N-~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n 383 (507)
|...+++. .++|++|+|++| .+++. +...+.......|+.|+++++
T Consensus 112 ~l~~l~~~----~~~L~~L~ls~c~~~~~~-----------------------------~~~~~~~~~~~~L~~L~l~~~ 158 (284)
T d2astb2 112 ALQTLLSS----CSRLDELNLSWCFDFTEK-----------------------------HVQVAVAHVSETITQLNLSGY 158 (284)
T ss_dssp HHHHHHHH----CTTCCEEECCCCTTCCHH-----------------------------HHHHHHHHSCTTCCEEECCSC
T ss_pred ccchhhHH----HHhccccccccccccccc-----------------------------cchhhhcccccccchhhhccc
Confidence 98877544 478999999987 34421 111111222367899999975
Q ss_pred --CCCchhHHHHHHhhcCCCCCCEEeccCC-CCChHHHHHHHhhCCCCCCccEEEccC-CCCChhHHHHHHHHHhcCCCC
Q 010572 384 --GLGSSGFRVLQDGVTKELKLVNINISKN-RGGVETAKFLSKLMPLAPELVEVNAGY-NLMPLESLTIICSALKVAKGH 459 (507)
Q Consensus 384 --~l~~~G~~~L~~aL~~n~~L~~LdLs~N-~i~~~g~~~L~~~L~~n~~L~~L~Ls~-N~l~~~g~~~L~~aL~~~~~~ 459 (507)
.+++.|...++.. .++|++|+|++| .+++.+...+++ .++|++|++++ +.++++|+..++ + .++
T Consensus 159 ~~~i~~~~l~~l~~~---~~~L~~L~L~~~~~itd~~~~~l~~----~~~L~~L~L~~C~~i~~~~l~~L~----~-~~~ 226 (284)
T d2astb2 159 RKNLQKSDLSTLVRR---CPNLVHLDLSDSVMLKNDCFQEFFQ----LNYLQHLSLSRCYDIIPETLLELG----E-IPT 226 (284)
T ss_dssp GGGSCHHHHHHHHHH---CTTCSEEECTTCTTCCGGGGGGGGG----CTTCCEEECTTCTTCCGGGGGGGG----G-CTT
T ss_pred ccccccccccccccc---cccccccccccccCCCchhhhhhcc----cCcCCEEECCCCCCCChHHHHHHh----c-CCC
Confidence 5788887777654 457999999986 589888776654 47899999998 589999976553 3 368
Q ss_pred ccEEEecCCCCCCCccHHHHHHHH
Q 010572 460 LQRLDLTGNNWELQPSHVSMLSEF 483 (507)
Q Consensus 460 L~~LdL~~N~~~~~~~~~~~l~~~ 483 (507)
|+.|+++++ +++.+...+++.
T Consensus 227 L~~L~l~~~---~~d~~l~~l~~~ 247 (284)
T d2astb2 227 LKTLQVFGI---VPDGTLQLLKEA 247 (284)
T ss_dssp CCEEECTTS---SCTTCHHHHHHH
T ss_pred CCEEeeeCC---CCHHHHHHHHHh
Confidence 999999987 366666666543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.2e-10 Score=110.13 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=65.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh--hHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL--ESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~--~g~~~L~ 450 (507)
.++++|++++|.++.... ........|++|++++|.++..... .+...++|++|+|++|.|.. +++
T Consensus 124 ~~l~~L~l~~n~l~~l~~----~~~~~l~~l~~l~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~L~~lp~~~---- 191 (266)
T d1p9ag_ 124 GELQELYLKGNELKTLPP----GLLTPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLYTIPKGF---- 191 (266)
T ss_dssp TTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSCCCCCCTTT----
T ss_pred cccccccccccccceecc----ccccccccchhcccccccccccCcc----ccccccccceeecccCCCcccChhH----
Confidence 678899999998875431 1233456799999999998764432 33445789999999999973 221
Q ss_pred HHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCC
Q 010572 451 SALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLP 489 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~ 489 (507)
-. ..+|+.|+|++|+|.=.-+.+. +.+..+++..
T Consensus 192 ---~~-~~~L~~L~L~~Np~~CdC~~~~-l~~wl~~~~~ 225 (266)
T d1p9ag_ 192 ---FG-SHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAE 225 (266)
T ss_dssp ---TT-TCCCSEEECCSCCBCCSGGGHH-HHHHHHHTGG
T ss_pred ---CC-CCCCCEEEecCCCCCCCcchHH-HHHHHHhccc
Confidence 12 3579999999999832333333 4444444333
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.5e-10 Score=112.19 Aligned_cols=204 Identities=17% Similarity=0.107 Sum_probs=125.3
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccc-ccccCCCCc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIENCPSS 276 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~-~~le~~~~~ 276 (507)
.+++|+|++|.... +-+..+.++.+|++|+++++.+........ . ....+..+..... .+..
T Consensus 33 ~~~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~------~--~~~~~~~l~~~~~~~~~~----- 95 (284)
T d1ozna_ 33 ASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNVLARIDAAAF------T--GLALLEQLDLSDNAQLRS----- 95 (284)
T ss_dssp TCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTT------T--TCTTCCEEECCSCTTCCC-----
T ss_pred CCCEEECcCCcCCC----CCHHHhhccccccccccccccccccccccc------c--cccccccccccccccccc-----
Confidence 46899998874421 111123466889999999998764322111 0 0112333322211 1111
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+. ...+..+++|++|+|++|.+...... ......+|+.+++++|.|++.... ++...
T Consensus 96 l~---~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~l~l~~N~l~~i~~~--------~f~~~------- 152 (284)
T d1ozna_ 96 VD---PATFHGLGRLHTLHLDRCGLQELGPG-----LFRGLAALQYLYLQDNALQALPDD--------TFRDL------- 152 (284)
T ss_dssp CC---TTTTTTCTTCCEEECTTSCCCCCCTT-----TTTTCTTCCEEECCSSCCCCCCTT--------TTTTC-------
T ss_pred cc---chhhcccccCCEEecCCccccccccc-----ccchhcccchhhhccccccccChh--------Hhccc-------
Confidence 11 22467789999999999998764432 124458899999999999852211 11111
Q ss_pred cccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 357 LLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
..|++|+|++|+|....- .++....+|+++++++|.++..... .+...++|++|++
T Consensus 153 ----------------~~L~~L~l~~N~l~~l~~----~~f~~l~~L~~l~l~~N~l~~i~~~----~f~~l~~L~~L~l 208 (284)
T d1ozna_ 153 ----------------GNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMTLYL 208 (284)
T ss_dssp ----------------TTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEEC
T ss_pred ----------------cchhhcccccCcccccch----hhhccccccchhhhhhccccccChh----Hhhhhhhcccccc
Confidence 457788888888864321 2344556788888888888765433 3444567888888
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 437 GYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 437 s~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+.|.+...... ++.. ..+|++|+|++|++
T Consensus 209 ~~N~i~~~~~~----~~~~-~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 209 FANNLSALPTE----ALAP-LRALQYLRLNDNPW 237 (284)
T ss_dssp CSSCCSCCCHH----HHTT-CTTCCEEECCSSCE
T ss_pred ccccccccccc----cccc-ccccCEEEecCCCC
Confidence 88888764432 3332 35788888888887
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.90 E-value=6.4e-10 Score=108.32 Aligned_cols=248 Identities=14% Similarity=0.085 Sum_probs=135.9
Q ss_pred ceeEEEEeccCcchhhhh--hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhcc
Q 010572 174 HYARCLRLQNALCVEETC--QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~~--~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~ 251 (507)
..++.|+|+..- ..++. .+.....|++|+++++.... +-+..+.++++|++|++++|.+..-.
T Consensus 31 ~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~----i~~~~f~~l~~L~~L~l~~n~l~~l~---------- 95 (305)
T d1xkua_ 31 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKELP---------- 95 (305)
T ss_dssp TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBCC----------
T ss_pred CCCCEEECcCCc-CCCcChhHhhccccccccccccccccc----cchhhhhCCCccCEecccCCccCcCc----------
Confidence 347777776421 11111 22334577888887663221 11122346678888888888765210
Q ss_pred CCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 252 ~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
......+..|....+.+.. +. ...+.....+..++...|.....+... .. ....++|+.+++++|.++
T Consensus 96 -~~~~~~l~~L~~~~n~l~~-----l~---~~~~~~~~~~~~l~~~~n~~~~~~~~~--~~-~~~l~~L~~l~l~~n~l~ 163 (305)
T d1xkua_ 96 -EKMPKTLQELRVHENEITK-----VR---KSVFNGLNQMIVVELGTNPLKSSGIEN--GA-FQGMKKLSYIRIADTNIT 163 (305)
T ss_dssp -SSCCTTCCEEECCSSCCCB-----BC---HHHHTTCTTCCEEECCSSCCCGGGBCT--TG-GGGCTTCCEEECCSSCCC
T ss_pred -cchhhhhhhhhccccchhh-----hh---hhhhhccccccccccccccccccCCCc--cc-cccccccCccccccCCcc
Confidence 0001223444433332211 11 123455666777777777655443321 11 233467777777777776
Q ss_pred CcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEecc
Q 010572 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIS 409 (507)
Q Consensus 332 ~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs 409 (507)
..-. ....++++|.+.++.. .......+. ..+++|++++|.++.... ..+....+|++|+|+
T Consensus 164 ~l~~-----------~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~l~~L~~s~n~l~~~~~----~~~~~l~~L~~L~L~ 227 (305)
T d1xkua_ 164 TIPQ-----------GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLANTPHLRELHLN 227 (305)
T ss_dssp SCCS-----------SCCTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCEECT----TTGGGSTTCCEEECC
T ss_pred ccCc-----------ccCCccCEEECCCCcC-CCCChhHhhcccccccccccccccccccc----ccccccccceeeecc
Confidence 3110 1123455555544430 000112222 678999999999986432 234456789999999
Q ss_pred CCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHH--HHHhcCCCCccEEEecCCCC
Q 010572 410 KNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIIC--SALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 410 ~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~--~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|.|+. +...+...++|++|+|++|.|+.-+....+ .++. ...+|+.|+|++|++
T Consensus 228 ~N~L~~-----lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~-~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 228 NNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT-KKASYSGVSLFSNPV 284 (305)
T ss_dssp SSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT-TSCCCSEEECCSSSS
T ss_pred cccccc-----cccccccccCCCEEECCCCccCccChhhccCcchhc-ccCCCCEEECCCCcC
Confidence 999864 223456678899999999999753222111 1112 235799999999987
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.87 E-value=5e-09 Score=103.98 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=126.6
Q ss_pred hCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCC
Q 010572 222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (507)
Q Consensus 222 ~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L 301 (507)
..+.++++|++++|.+++..... ....++.|+++++.+.+. ..+..+++|++|++++|.+
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~~~----------~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~l~~n~l 253 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITPLG----------ILTNLDELSLNGNQLKDI----------GTLASLTNLTDLDLANNQI 253 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGG----------GCTTCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCC
T ss_pred ccccccceeeccCCccCCCCccc----------ccCCCCEEECCCCCCCCc----------chhhcccccchhccccCcc
Confidence 34578899999998877532211 123477777777664331 1357788999999999999
Q ss_pred CchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hHHHHHHhhhc-CCCcEEE
Q 010572 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG-TSVQVLN 379 (507)
Q Consensus 302 ~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~-~~L~~L~ 379 (507)
.+... + ...++|++|++++|.+++.. .+.....++.+....+. .. +...-. ..+++|+
T Consensus 254 ~~~~~------~-~~~~~L~~L~l~~~~l~~~~----------~~~~~~~l~~l~~~~n~l~~---~~~~~~~~~l~~L~ 313 (384)
T d2omza2 254 SNLAP------L-SGLTKLTELKLGANQISNIS----------PLAGLTALTNLELNENQLED---ISPISNLKNLTYLT 313 (384)
T ss_dssp CCCGG------G-TTCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCSC---CGGGGGCTTCSEEE
T ss_pred CCCCc------c-cccccCCEeeccCcccCCCC----------cccccccccccccccccccc---ccccchhcccCeEE
Confidence 87543 2 34589999999999998532 12223334444443332 11 111112 7899999
Q ss_pred eccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCC
Q 010572 380 IGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGH 459 (507)
Q Consensus 380 Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~ 459 (507)
+++|++.+.. .+....+|++|+|++|.+++-. .+...++|+.|++++|.|.+-- .+.. -.+
T Consensus 314 ls~n~l~~l~------~l~~l~~L~~L~L~~n~l~~l~------~l~~l~~L~~L~l~~N~l~~l~------~l~~-l~~ 374 (384)
T d2omza2 314 LYFNNISDIS------PVSSLTKLQRLFFANNKVSDVS------SLANLTNINWLSAGHNQISDLT------PLAN-LTR 374 (384)
T ss_dssp CCSSCCSCCG------GGGGCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCBCG------GGTT-CTT
T ss_pred CCCCCCCCCc------ccccCCCCCEEECCCCCCCCCh------hHcCCCCCCEEECCCCcCCCCh------hhcc-CCC
Confidence 9999998642 2556778999999999998632 2445689999999999998532 2433 358
Q ss_pred ccEEEecCC
Q 010572 460 LQRLDLTGN 468 (507)
Q Consensus 460 L~~LdL~~N 468 (507)
|+.|+|++|
T Consensus 375 L~~L~L~~N 383 (384)
T d2omza2 375 ITQLGLNDQ 383 (384)
T ss_dssp CSEEECCCE
T ss_pred CCEeeCCCC
Confidence 999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.87 E-value=2.9e-11 Score=118.62 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=141.0
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeec-CCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~-~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
.++++|+|+++...... -++.-++++++|++|+|++ |.++++.+..+. . -..++.|+++.+++....
T Consensus 50 ~~v~~L~L~~~~l~g~~--~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~-------L~~L~~L~Ls~N~l~~~~-- 117 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-K-------LTQLHYLYITHTNVSGAI-- 117 (313)
T ss_dssp CCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-G-------CTTCSEEEEEEECCEEEC--
T ss_pred EEEEEEECCCCCCCCCC--CCChHHhcCccccccccccccccccccccccc-c-------ccccchhhhccccccccc--
Confidence 36788888876332110 0122346788999999986 677765544331 1 135788888877654311
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCc-Cc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL-QS 354 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L-~~ 354 (507)
...+...+.|+++++++|.+.......+ ...+.++.+++++|.+++.++. .+.....+ +.
T Consensus 118 ------~~~~~~~~~L~~l~l~~N~~~~~~p~~l-----~~l~~L~~l~l~~n~l~~~ip~--------~~~~l~~l~~~ 178 (313)
T d1ogqa_ 118 ------PDFLSQIKTLVTLDFSYNALSGTLPPSI-----SSLPNLVGITFDGNRISGAIPD--------SYGSFSKLFTS 178 (313)
T ss_dssp ------CGGGGGCTTCCEEECCSSEEESCCCGGG-----GGCTTCCEEECCSSCCEEECCG--------GGGCCCTTCCE
T ss_pred ------cccccchhhhcccccccccccccCchhh-----ccCcccceeecccccccccccc--------ccccccccccc
Confidence 1235667889999999998776544322 3458899999999999865543 23333222 33
Q ss_pred cccccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 355 LRLLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 355 L~ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
+...+++ ..+.....+. .....++++.+.+... +.........|+.|++++|.+..... .+...++|+.
T Consensus 179 l~~~~n~-l~~~~~~~~~~l~~~~l~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~l~~~~~-----~~~~~~~L~~ 248 (313)
T d1ogqa_ 179 MTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNG 248 (313)
T ss_dssp EECCSSE-EEEECCGGGGGCCCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCE
T ss_pred ccccccc-ccccccccccccccccccccccccccc----cccccccccccccccccccccccccc-----cccccccccc
Confidence 3333332 1111112222 4556788887765432 22233455689999999999876432 2445578999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.|...-. +.+..- ++|++|+|++|++
T Consensus 249 L~Ls~N~l~g~iP----~~l~~L-~~L~~L~Ls~N~l 280 (313)
T d1ogqa_ 249 LDLRNNRIYGTLP----QGLTQL-KFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSCCEECCC----GGGGGC-TTCCEEECCSSEE
T ss_pred ccCccCeecccCC----hHHhCC-CCCCEEECcCCcc
Confidence 9999999974321 233333 5799999999988
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.86 E-value=1.7e-09 Score=107.46 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=56.0
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..++.++++.|.+.... .+.....+++|++++|++++-. .+...++|++|++++|.|++-. .
T Consensus 285 ~~l~~l~~~~n~l~~~~------~~~~~~~l~~L~ls~n~l~~l~------~l~~l~~L~~L~L~~n~l~~l~------~ 346 (384)
T d2omza2 285 TALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNISDIS------PVSSLTKLQRLFFANNKVSDVS------S 346 (384)
T ss_dssp TTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSCCSCCG------GGGGCTTCCEEECCSSCCCCCG------G
T ss_pred ccccccccccccccccc------ccchhcccCeEECCCCCCCCCc------ccccCCCCCEEECCCCCCCCCh------h
Confidence 45566666666665421 2445667999999999998642 1345588999999999998522 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+... .+|++|+|++|++
T Consensus 347 l~~l-~~L~~L~l~~N~l 363 (384)
T d2omza2 347 LANL-TNINWLSAGHNQI 363 (384)
T ss_dssp GGGC-TTCCEEECCSSCC
T ss_pred HcCC-CCCCEEECCCCcC
Confidence 4443 6899999999997
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=8.4e-10 Score=105.95 Aligned_cols=75 Identities=11% Similarity=-0.110 Sum_probs=51.7
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh-HHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE-SLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~-g~~~L~~ 451 (507)
..++.|++++|+|+.... +++....+|++|+|++|.|+. +...+..+++|+.|+|++|++.=+ .+..+..
T Consensus 148 ~~l~~l~l~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~L~~-----lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~ 218 (266)
T d1p9ag_ 148 PKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218 (266)
T ss_dssp TTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHH
T ss_pred ccchhcccccccccccCc----cccccccccceeecccCCCcc-----cChhHCCCCCCCEEEecCCCCCCCcchHHHHH
Confidence 678999999999975432 234456789999999999874 222333457899999999999732 2333444
Q ss_pred HHhcC
Q 010572 452 ALKVA 456 (507)
Q Consensus 452 aL~~~ 456 (507)
-++++
T Consensus 219 wl~~~ 223 (266)
T d1p9ag_ 219 WLQDN 223 (266)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 45543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.85 E-value=8.9e-10 Score=107.27 Aligned_cols=224 Identities=15% Similarity=0.122 Sum_probs=131.8
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..+++|+++++... .+.+.-+.++++|++|++++|.+..-....+ .. ...++.|.++++++...
T Consensus 31 ~~l~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f-~~-------l~~L~~L~l~~n~l~~l---- 94 (305)
T d1xkua_ 31 PDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAF-AP-------LVKLERLYLSKNQLKEL---- 94 (305)
T ss_dssp TTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TT-------CTTCCEEECCSSCCSBC----
T ss_pred CCCCEEECcCCcCC----CcChhHhhccccccccccccccccccchhhh-hC-------CCccCEecccCCccCcC----
Confidence 35788888877321 1111112456788888888887653211111 00 12355555555543221
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+. ...+.+..|++++|.+........ .....+..++...|....... ....+....+|+.+.
T Consensus 95 -~~------~~~~~l~~L~~~~n~l~~l~~~~~-----~~~~~~~~l~~~~n~~~~~~~------~~~~~~~l~~L~~l~ 156 (305)
T d1xkua_ 95 -PE------KMPKTLQELRVHENEITKVRKSVF-----NGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIR 156 (305)
T ss_dssp -CS------SCCTTCCEEECCSSCCCBBCHHHH-----TTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEE
T ss_pred -cc------chhhhhhhhhccccchhhhhhhhh-----hccccccccccccccccccCC------CccccccccccCccc
Confidence 10 123456777777777766544321 233556666666665542110 011444455566666
Q ss_pred cccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 357 LLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
+.++. . ..++..+..++++|++++|.+..... .++.....+++|++++|.++......+ ...++|++|+|
T Consensus 157 l~~n~-l-~~l~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~l~~L~~s~n~l~~~~~~~~----~~l~~L~~L~L 226 (305)
T d1xkua_ 157 IADTN-I-TTIPQGLPPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSISAVDNGSL----ANTPHLRELHL 226 (305)
T ss_dssp CCSSC-C-CSCCSSCCTTCSEEECTTSCCCEECT----GGGTTCTTCCEEECCSSCCCEECTTTG----GGSTTCCEEEC
T ss_pred cccCC-c-cccCcccCCccCEEECCCCcCCCCCh----hHhhccccccccccccccccccccccc----cccccceeeec
Confidence 65553 0 11222233789999999999876542 345566789999999999987544333 34578999999
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 437 GYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 437 s~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++|.|..- ..++... .+|+.|+|++|++
T Consensus 227 ~~N~L~~l-----p~~l~~l-~~L~~L~Ls~N~i 254 (305)
T d1xkua_ 227 NNNKLVKV-----PGGLADH-KYIQVVYLHNNNI 254 (305)
T ss_dssp CSSCCSSC-----CTTTTTC-SSCCEEECCSSCC
T ss_pred cccccccc-----ccccccc-cCCCEEECCCCcc
Confidence 99999741 2334433 6899999999997
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.82 E-value=1.5e-08 Score=93.76 Aligned_cols=145 Identities=19% Similarity=0.130 Sum_probs=90.1
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
+..+++|++|+|++|++.+-.. + ...++|+.|++++|.|++. + .+...++|+.|.+.++..
T Consensus 64 l~~l~~L~~L~L~~n~i~~l~~------~-~~l~~L~~L~l~~n~i~~l-~---------~l~~l~~L~~L~l~~~~~-- 124 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTDIKP------L-ANLKNLGWLFLDENKVKDL-S---------SLKDLKKLKSLSLEHNGI-- 124 (210)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG------G-TTCTTCCEEECCSSCCCCG-G---------GGTTCTTCCEEECTTSCC--
T ss_pred HhhCCCCCEEeCCCccccCccc------c-ccCcccccccccccccccc-c---------cccccccccccccccccc--
Confidence 3456677777777777765332 1 2346777777777777641 1 233344455555444320
Q ss_pred HHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 365 ASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 365 ~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
..+..... +.++.+++++|.+++... .....+|+++++++|.+++-. .+...++|++|+|++|.|++
T Consensus 125 ~~~~~l~~l~~l~~l~~~~n~l~~~~~------~~~l~~L~~l~l~~n~l~~i~------~l~~l~~L~~L~Ls~N~i~~ 192 (210)
T d1h6ta2 125 SDINGLVHLPQLESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSKNHISD 192 (210)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGG------GGGCTTCSEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCB
T ss_pred ccccccccccccccccccccccccccc------ccccccccccccccccccccc------cccCCCCCCEEECCCCCCCC
Confidence 00111111 678999999999876431 334567999999999987531 24456789999999999985
Q ss_pred hHHHHHHHHHhcCCCCccEEEecC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTG 467 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~ 467 (507)
- .++.. ..+|+.|+|++
T Consensus 193 l------~~l~~-l~~L~~L~Ls~ 209 (210)
T d1h6ta2 193 L------RALAG-LKNLDVLELFS 209 (210)
T ss_dssp C------GGGTT-CTTCSEEEEEE
T ss_pred C------hhhcC-CCCCCEEEccC
Confidence 2 13443 25799999864
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.7e-09 Score=104.51 Aligned_cols=85 Identities=19% Similarity=0.079 Sum_probs=63.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|+.+++++|.|+.... +++....+|++|+|++|.++.-.. .++...++|+.+++++|.+..-.. .+
T Consensus 129 ~~L~~l~l~~N~l~~i~~----~~f~~~~~L~~L~l~~N~l~~l~~----~~f~~l~~L~~l~l~~N~l~~i~~----~~ 196 (284)
T d1ozna_ 129 AALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHP----HA 196 (284)
T ss_dssp TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT----TT
T ss_pred cccchhhhccccccccCh----hHhccccchhhcccccCcccccch----hhhccccccchhhhhhccccccCh----hH
Confidence 678999999999986542 234455679999999999875433 244455789999999999985432 22
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.||+++|.+
T Consensus 197 f~~-l~~L~~L~l~~N~i 213 (284)
T d1ozna_ 197 FRD-LGRLMTLYLFANNL 213 (284)
T ss_dssp TTT-CTTCCEEECCSSCC
T ss_pred hhh-hhhccccccccccc
Confidence 333 35899999999998
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.77 E-value=2.1e-08 Score=93.43 Aligned_cols=184 Identities=20% Similarity=0.203 Sum_probs=96.4
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.+|++|++.+|.+++- +.+.. ...++.|+++.+.+.+. ..+..+++|++|++++|.+.+-
T Consensus 41 ~~L~~L~l~~~~i~~l------~~l~~----l~~L~~L~ls~n~i~~~----------~~l~~l~~l~~l~~~~n~~~~i 100 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI------EGVQY----LNNLIGLELKDNQITDL----------APLKNLTKITELELSGNPLKNV 100 (227)
T ss_dssp HTCCEEECTTSCCCCC------TTGGG----CTTCCEEECCSSCCCCC----------GGGTTCCSCCEEECCSCCCSCC
T ss_pred CCcCEEECCCCCCCcc------hhHhc----CCCCcEeecCCceeecc----------cccccccccccccccccccccc
Confidence 4678888888766531 11111 12455666655543221 1145666777777777766553
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc-CCCcEEEeccC
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG-TSVQVLNIGAI 383 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~-~~L~~L~Ls~n 383 (507)
.. + ...+.|+.+++++|.+.+... +.....+..+...+.. .... ..... ..|++|++++|
T Consensus 101 ~~------l-~~l~~L~~l~l~~~~~~~~~~----------~~~~~~~~~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~n 161 (227)
T d1h6ua2 101 SA------I-AGLQSIKTLDLTSTQITDVTP----------LAGLSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNA 161 (227)
T ss_dssp GG------G-TTCTTCCEEECTTSCCCCCGG----------GTTCTTCCEEECCSSC-CCCC-GGGGGCTTCCEEECCSS
T ss_pred cc------c-cccccccccccccccccccch----------hccccchhhhhchhhh-hchh-hhhcccccccccccccc
Confidence 21 2 234667777777776653211 1111222222222221 0000 00111 56777777777
Q ss_pred CCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEE
Q 010572 384 GLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRL 463 (507)
Q Consensus 384 ~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~L 463 (507)
.+.+.. .+....+|++|+|++|.+++-. .+...++|++|+|++|+|++-. .+.. ..+|+.|
T Consensus 162 ~~~~~~------~l~~l~~L~~L~Ls~n~l~~l~------~l~~l~~L~~L~Ls~N~lt~i~------~l~~-l~~L~~L 222 (227)
T d1h6ua2 162 QVSDLT------PLANLSKLTTLKADDNKISDIS------PLASLPNLIEVHLKNNQISDVS------PLAN-TSNLFIV 222 (227)
T ss_dssp CCCCCG------GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECTTSCCCBCG------GGTT-CTTCCEE
T ss_pred ccccch------hhcccccceecccCCCccCCCh------hhcCCCCCCEEECcCCcCCCCc------cccc-CCCCCEE
Confidence 776532 1344567788888877776521 1334467788888888776532 1332 3567777
Q ss_pred Eec
Q 010572 464 DLT 466 (507)
Q Consensus 464 dL~ 466 (507)
+|+
T Consensus 223 ~ls 225 (227)
T d1h6ua2 223 TLT 225 (227)
T ss_dssp EEE
T ss_pred Eee
Confidence 775
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.70 E-value=4.6e-08 Score=89.47 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=25.3
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
..+++|++|+|++|++.+... + ...++|++|++++|.+..
T Consensus 59 ~~l~nL~~L~Ls~N~l~~~~~------l-~~l~~L~~L~l~~n~~~~ 98 (199)
T d2omxa2 59 EYLNNLTQINFSNNQLTDITP------L-KNLTKLVDILMNNNQIAD 98 (199)
T ss_dssp GGCTTCCEEECCSSCCCCCGG------G-TTCTTCCEEECCSSCCCC
T ss_pred ccCCCcCcCccccccccCccc------c-cCCccccccccccccccc
Confidence 446677777777777765321 1 234677777777776653
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.69 E-value=2.4e-08 Score=91.38 Aligned_cols=144 Identities=16% Similarity=0.110 Sum_probs=104.6
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASL 367 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L 367 (507)
.+++++|++++|++.+-. ++ ...++|++|+|++|.|++.. .++..++|+.|.+..+.. ..+
T Consensus 39 l~~l~~L~l~~~~i~~l~------~l-~~l~nL~~L~Ls~N~l~~~~----------~l~~l~~L~~L~l~~n~~--~~~ 99 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSID------GV-EYLNNLTQINFSNNQLTDIT----------PLKNLTKLVDILMNNNQI--ADI 99 (199)
T ss_dssp HTTCCEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCC--CCC
T ss_pred hcCCCEEECCCCCCCCcc------cc-ccCCCcCcCccccccccCcc----------cccCCccccccccccccc--ccc
Confidence 468999999999998732 22 34589999999999998632 345566677777666541 011
Q ss_pred Hhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 368 GKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 368 ~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
. .+. ..|+.|++++|.+.... .+....+|+.|++++|.+.... .+...++|+.|++++|.+.+-.
T Consensus 100 ~-~l~~l~~L~~L~l~~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~------~l~~~~~L~~L~l~~n~l~~l~ 166 (199)
T d2omxa2 100 T-PLANLTNLTGLTLFNNQITDID------PLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLNFSSNQVTDLK 166 (199)
T ss_dssp G-GGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCCG
T ss_pred c-cccccccccccccccccccccc------ccchhhhhHHhhhhhhhhcccc------cccccccccccccccccccCCc
Confidence 1 122 78999999999987532 2455678999999999987532 3456688999999999998621
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++.. ..+|++|++++|++
T Consensus 167 ------~l~~-l~~L~~L~ls~N~i 184 (199)
T d2omxa2 167 ------PLAN-LTTLERLDISSNKV 184 (199)
T ss_dssp ------GGTT-CTTCCEEECCSSCC
T ss_pred ------cccC-CCCCCEEECCCCCC
Confidence 2443 36899999999987
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.63 E-value=3.6e-08 Score=91.79 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=107.7
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|++.++... .+.+ +.++++|++|++++|.+++... +.. ...++.+.+..+.+.+
T Consensus 40 l~~L~~L~l~~~~i~-~l~~-----l~~l~~L~~L~ls~n~i~~~~~------l~~----l~~l~~l~~~~n~~~~---- 99 (227)
T d1h6ua2 40 LDGITTLSAFGTGVT-TIEG-----VQYLNNLIGLELKDNQITDLAP------LKN----LTKITELELSGNPLKN---- 99 (227)
T ss_dssp HHTCCEEECTTSCCC-CCTT-----GGGCTTCCEEECCSSCCCCCGG------GTT----CCSCCEEECCSCCCSC----
T ss_pred cCCcCEEECCCCCCC-cchh-----HhcCCCCcEeecCCceeecccc------ccc----cccccccccccccccc----
Confidence 345666666655321 1111 2356777777777777664221 111 1234455544433221
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+ ..+..+++|+.+++++|...+... + ...+.+..+.++.|.+.... .+....+|+.|
T Consensus 100 -i-----~~l~~l~~L~~l~l~~~~~~~~~~------~-~~~~~~~~l~~~~~~~~~~~----------~~~~~~~L~~L 156 (227)
T d1h6ua2 100 -V-----SAIAGLQSIKTLDLTSTQITDVTP------L-AGLSNLQVLYLDLNQITNIS----------PLAGLTNLQYL 156 (227)
T ss_dssp -C-----GGGTTCTTCCEEECTTSCCCCCGG------G-TTCTTCCEEECCSSCCCCCG----------GGGGCTTCCEE
T ss_pred -c-----ccccccccccccccccccccccch------h-ccccchhhhhchhhhhchhh----------hhccccccccc
Confidence 1 134567778888888777655322 1 23477777777777776422 23334445555
Q ss_pred ccccch-hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEE
Q 010572 356 RLLNLS-HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEV 434 (507)
Q Consensus 356 ~ll~l~-~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L 434 (507)
.+.++. .....+.. -++|++|+|++|++++.. .+....+|++|+|++|++++-. .+...++|+.|
T Consensus 157 ~l~~n~~~~~~~l~~--l~~L~~L~Ls~n~l~~l~------~l~~l~~L~~L~Ls~N~lt~i~------~l~~l~~L~~L 222 (227)
T d1h6ua2 157 SIGNAQVSDLTPLAN--LSKLTTLKADDNKISDIS------PLASLPNLIEVHLKNNQISDVS------PLANTSNLFIV 222 (227)
T ss_dssp ECCSSCCCCCGGGTT--CTTCCEEECCSSCCCCCG------GGGGCTTCCEEECTTSCCCBCG------GGTTCTTCCEE
T ss_pred cccccccccchhhcc--cccceecccCCCccCCCh------hhcCCCCCCEEECcCCcCCCCc------ccccCCCCCEE
Confidence 554443 00011111 178999999999998643 2455678999999999998642 25566889999
Q ss_pred Ecc
Q 010572 435 NAG 437 (507)
Q Consensus 435 ~Ls 437 (507)
+++
T Consensus 223 ~ls 225 (227)
T d1h6ua2 223 TLT 225 (227)
T ss_dssp EEE
T ss_pred Eee
Confidence 997
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.59 E-value=1.3e-07 Score=87.25 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=41.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
+.|+++++++|.+.+.. .+....+|++|+|++|.|++- ..+...++|++|+|++
T Consensus 156 ~~L~~l~l~~n~l~~i~------~l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 156 TKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFS 209 (210)
T ss_dssp TTCSEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEEEEE
T ss_pred ccccccccccccccccc------cccCCCCCCEEECCCCCCCCC------hhhcCCCCCCEEEccC
Confidence 67899999999997532 245567899999999999762 1355668899999973
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.53 E-value=5.3e-08 Score=82.84 Aligned_cols=61 Identities=23% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
.+|++|++++|.|++.. .+....+|++|++++|+|+.-.. + ..+...++|+.|++++|++.
T Consensus 43 ~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~l~~N~i~~~~~--~-~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 43 RCLEVLQASDNALENVD------GVANLPRLQELLLCNNRLQQSAA--I-QPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp TTCCEEECCSSCCCCCG------GGTTCSSCCEEECCSSCCCSSST--T-GGGGGCTTCCEEECTTSGGG
T ss_pred hcccccccccccccccC------ccccccccCeEECCCCccCCCCC--c-hhhcCCCCCCEEECCCCcCC
Confidence 34566666666665421 23344556666666666553211 0 11223355666666666664
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.45 E-value=1.6e-07 Score=79.66 Aligned_cols=82 Identities=20% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh-HHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE-SLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~-g~~~L~~ 451 (507)
..|++|++++|.|+.. ...+....+|++|++++|.|+.-. .+...++|++|++++|.|++- ++ .
T Consensus 20 ~~L~~L~ls~N~l~~l-----p~~~~~l~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~l~~N~i~~~~~~----~ 84 (124)
T d1dcea3 20 LLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNALENVD------GVANLPRLQELLLCNNRLQQSAAI----Q 84 (124)
T ss_dssp TTCCEEECCSSCCCCC-----CGGGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEEECCSSCCCSSSTT----G
T ss_pred CCCCEEECCCCccCcc-----hhhhhhhhcccccccccccccccC------ccccccccCeEECCCCccCCCCCc----h
Confidence 5689999999999863 234556778999999999998631 355668999999999999853 22 2
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
.+.. .++|+.|++++|++
T Consensus 85 ~l~~-~~~L~~L~l~~N~i 102 (124)
T d1dcea3 85 PLVS-CPRLVLLNLQGNSL 102 (124)
T ss_dssp GGGG-CTTCCEEECTTSGG
T ss_pred hhcC-CCCCCEEECCCCcC
Confidence 3333 35899999999997
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.7e-07 Score=81.94 Aligned_cols=130 Identities=13% Similarity=0.042 Sum_probs=82.5
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
.....+++|+|++|+|+.-. .+.....+|+.||||+|.|+.. . .+...
T Consensus 15 ~n~~~lr~L~L~~n~I~~i~------~~~~~l~~L~~L~Ls~N~i~~l-~---------~~~~l---------------- 62 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVIE------NLGATLDQFDAIDFSDNEIRKL-D---------GFPLL---------------- 62 (162)
T ss_dssp ECTTSCEEEECTTSCCCSCC------CGGGGTTCCSEEECCSSCCCEE-C---------CCCCC----------------
T ss_pred cCcCcCcEEECCCCCCCccC------ccccccccCCEEECCCCCCCcc-C---------CcccC----------------
Confidence 34557899999999997742 1223457899999999998741 1 11111
Q ss_pred HHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh-
Q 010572 366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE- 444 (507)
Q Consensus 366 ~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~- 444 (507)
..|++|+|++|+|+..+... .....+|++|++++|.|++-.. + ..+...++|++|++++|++...
T Consensus 63 -------~~L~~L~ls~N~i~~l~~~~----~~~l~~L~~L~L~~N~i~~~~~--l-~~l~~l~~L~~L~l~~N~i~~~~ 128 (162)
T d1a9na_ 63 -------RRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLVELGD--L-DPLASLKSLTYLCILRNPVTNKK 128 (162)
T ss_dssp -------SSCCEEECCSSCCCEECSCH----HHHCTTCCEEECCSCCCCCGGG--G-GGGGGCTTCCEEECCSSGGGGST
T ss_pred -------cchhhhhcccccccCCCccc----cccccccccceecccccccccc--c-cccccccccchhhcCCCcccccc
Confidence 45788888888887643211 1235678999999998875321 1 2344567899999999988643
Q ss_pred HHHHHHHHHhcCCCCccEEE
Q 010572 445 SLTIICSALKVAKGHLQRLD 464 (507)
Q Consensus 445 g~~~L~~aL~~~~~~L~~Ld 464 (507)
+.+. .++.. -++|+.||
T Consensus 129 ~~r~--~~i~~-lp~L~~LD 145 (162)
T d1a9na_ 129 HYRL--YVIYK-VPQVRVLD 145 (162)
T ss_dssp THHH--HHHHH-CTTCSEET
T ss_pred chHH--HHHHH-CCCcCeeC
Confidence 2111 11222 24788886
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.39 E-value=8.4e-08 Score=87.18 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=33.7
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
..|++|+|++|+|..... +++.....|++|+|++|.|+.--. .++...++|++|+|++|.+.
T Consensus 78 ~~L~~L~Ls~N~l~~l~~----~~F~~l~~L~~L~L~~N~l~~i~~----~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 78 SHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMP----GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECT----TSSTTCTTCCEEECTTCCBC
T ss_pred cccceeeeccccccccCH----HHHhCCCcccccccCCccccccCH----HHhcCCcccccccccccccc
Confidence 456666777776654321 123334556677777666654222 12333455666666666664
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.4e-07 Score=82.27 Aligned_cols=109 Identities=16% Similarity=0.047 Sum_probs=78.6
Q ss_pred CCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHH
Q 010572 316 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 395 (507)
Q Consensus 316 ~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~ 395 (507)
+...+++|||++|.|+.. +. .. .. -..|+.|||++|.|....
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~--------~~----------------------~~-l~~L~~L~Ls~N~i~~l~------ 57 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-EN--------LG----------------------AT-LDQFDAIDFSDNEIRKLD------ 57 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CC--------GG----------------------GG-TTCCSEEECCSSCCCEEC------
T ss_pred CcCcCcEEECCCCCCCcc-Cc--------cc----------------------cc-cccCCEEECCCCCCCccC------
Confidence 447899999999999852 10 00 00 156899999999998642
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 396 GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 396 aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+....+|++|++++|.++.-....+.. .++|++|++++|.|.+-+- + ..+... .+|+.|++++|.+
T Consensus 58 ~~~~l~~L~~L~ls~N~i~~l~~~~~~~----l~~L~~L~L~~N~i~~~~~--l-~~l~~l-~~L~~L~l~~N~i 124 (162)
T d1a9na_ 58 GFPLLRRLKTLLVNNNRICRIGEGLDQA----LPDLTELILTNNSLVELGD--L-DPLASL-KSLTYLCILRNPV 124 (162)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHH----CTTCCEEECCSCCCCCGGG--G-GGGGGC-TTCCEEECCSSGG
T ss_pred CcccCcchhhhhcccccccCCCcccccc----ccccccceecccccccccc--c-cccccc-cccchhhcCCCcc
Confidence 3566778999999999998654333332 3789999999999986321 1 234433 5799999999997
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.32 E-value=5.1e-07 Score=87.49 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 401 LKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 401 ~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+|++|+|++|.|+.- . ...++|+.|+|++|.|+.-. ....+|++|+|++|++
T Consensus 284 ~~L~~L~Ls~N~l~~l-----p---~~~~~L~~L~L~~N~L~~l~---------~~~~~L~~L~L~~N~L 336 (353)
T d1jl5a_ 284 PSLEELNVSNNKLIEL-----P---ALPPRLERLIASFNHLAEVP---------ELPQNLKQLHVEYNPL 336 (353)
T ss_dssp TTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCccCcc-----c---cccCCCCEEECCCCcCCccc---------cccCCCCEEECcCCcC
Confidence 4699999999988641 1 12367999999999987521 1124799999999987
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.30 E-value=1.4e-07 Score=85.66 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=16.6
Q ss_pred CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 400 ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 400 n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
...|++|+|++|+|+.-.+. ++...++|++|+|++|.|.
T Consensus 77 ~~~L~~L~Ls~N~l~~l~~~----~F~~l~~L~~L~L~~N~l~ 115 (192)
T d1w8aa_ 77 ASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp CTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCC
T ss_pred ccccceeeeccccccccCHH----HHhCCCcccccccCCcccc
Confidence 33455555555554432111 2222344555555555554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.15 E-value=1.9e-07 Score=85.63 Aligned_cols=136 Identities=20% Similarity=0.155 Sum_probs=90.3
Q ss_pred HHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchh
Q 010572 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH 362 (507)
Q Consensus 283 ~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~ 362 (507)
..+..+++|++|+|++|+|.+-.. + ...++|++|+|++|.|+.. +.
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i~~--l-----~~l~~L~~L~Ls~N~i~~i-~~-------------------------- 87 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKISS--L-----SGMENLRILSLGRNLIKKI-EN-------------------------- 87 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCCCC--H-----HHHTTCCEEECCEEEECSC-SS--------------------------
T ss_pred hHHhcccccceeECcccCCCCccc--c-----cCCccccChhhcccccccc-cc--------------------------
Confidence 456788999999999999987421 2 1238899999999988741 10
Q ss_pred HHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHH-HHHHHhhCCCCCCccEEEccCCCC
Q 010572 363 IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET-AKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 363 ~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g-~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
.... ..+|++|++++|.|+... .+....+|++|+|++|.|++-. ...+ ...++|+.|++++|++
T Consensus 88 ~~~~-----~~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~L~~N~i~~~~~~~~l----~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 88 LDAV-----ADTLEELWISYNQIASLS------GIEKLVNLRVLYMSNNKITNWGEIDKL----AALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHH-----HHHCCEEECSEEECCCHH------HHHHHHHSSEEEESEEECCCHHHHHHH----TTTTTCSEEEECSSHH
T ss_pred cccc-----cccccccccccccccccc------cccccccccccccccchhccccccccc----cCCCccceeecCCCcc
Confidence 0000 135899999999998642 2333457999999999998643 2333 4458899999999988
Q ss_pred ChhHH------HHHHHHHhcCCCCccEEEecCCCC
Q 010572 442 PLESL------TIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 442 ~~~g~------~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..... ......+.. -++|+.|| +..+
T Consensus 153 ~~~~~~~~~~~~~r~~vi~~-lp~L~~LD--~~~I 184 (198)
T d1m9la_ 153 YNDYKENNATSEYRIEVVKR-LPNLKKLD--GMPV 184 (198)
T ss_dssp HHHHCTTTTHHHHHHHHHHH-CSSCCEES--SGGG
T ss_pred ccCcccccchhhHHHHHHHH-CCCcCEeC--CccC
Confidence 54221 111122333 25799986 4554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=2.2e-05 Score=69.09 Aligned_cols=87 Identities=23% Similarity=0.136 Sum_probs=57.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHH-HHHHhhCCCCCCccEEEccCCCCChh---HHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETA-KFLSKLMPLAPELVEVNAGYNLMPLE---SLTI 448 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~-~~L~~~L~~n~~L~~L~Ls~N~l~~~---g~~~ 448 (507)
++|++|+|++|+|++.. .+...+....+|+.|+|++|.|++-.. ..+ ....|++|++++|++... ....
T Consensus 65 ~~L~~L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l-----~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 65 PELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSERELDKI-----KGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp TTCCCCCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH-----TTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred CCCCEeeCCCccccCCc--hhHHHHhhCCcccccccccCccccchhhhhh-----hccccceeecCCCCcCcCcccchhH
Confidence 78999999999998743 223334456789999999999886432 222 234689999999999642 2233
Q ss_pred HHHHHhcCCCCccEEEecCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~ 469 (507)
...+++. -++|+.|| |+.
T Consensus 138 ~~~i~~~-~P~L~~LD--g~~ 155 (162)
T d1koha1 138 ISAIRER-FPKLLRLD--GHE 155 (162)
T ss_dssp HHHHHTT-STTCCEET--TEE
T ss_pred HHHHHHH-CCCCCEEC--cCC
Confidence 3344443 35788884 554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=97.71 E-value=5.1e-06 Score=75.82 Aligned_cols=105 Identities=23% Similarity=0.183 Sum_probs=73.9
Q ss_pred CCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchh-HHHHHH
Q 010572 317 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSG-FRVLQD 395 (507)
Q Consensus 317 ~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G-~~~L~~ 395 (507)
..+|++|+|++|.|+.. . .+ ..+ .+|++|+|++|.|++.. ....
T Consensus 47 L~~L~~L~Ls~n~I~~i-~---------~l------------------~~l-----~~L~~L~Ls~N~i~~i~~~~~~-- 91 (198)
T d1m9la_ 47 LKACKHLALSTNNIEKI-S---------SL------------------SGM-----ENLRILSLGRNLIKKIENLDAV-- 91 (198)
T ss_dssp TTTCCEEECSEEEESCC-C---------CH------------------HHH-----TTCCEEECCEEEECSCSSHHHH--
T ss_pred ccccceeECcccCCCCc-c---------cc------------------cCC-----ccccChhhcccccccccccccc--
Confidence 48899999999988741 1 00 011 67899999999998642 1111
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 396 GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 396 aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...|++|++++|.|+.- ..+.. .++|+.|++++|.|++-+. + ..+... ++|+.|+|++|++
T Consensus 92 ----~~~L~~L~l~~N~i~~l--~~~~~----l~~L~~L~L~~N~i~~~~~--~-~~l~~l-~~L~~L~L~~N~l 152 (198)
T d1m9la_ 92 ----ADTLEELWISYNQIASL--SGIEK----LVNLRVLYMSNNKITNWGE--I-DKLAAL-DKLEDLLLAGNPL 152 (198)
T ss_dssp ----HHHCCEEECSEEECCCH--HHHHH----HHHSSEEEESEEECCCHHH--H-HHHTTT-TTCSEEEECSSHH
T ss_pred ----ccccccccccccccccc--ccccc----cccccccccccchhccccc--c-ccccCC-CccceeecCCCcc
Confidence 12599999999999863 22333 2579999999999986432 1 234443 6899999999986
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=1.6e-06 Score=80.60 Aligned_cols=59 Identities=14% Similarity=-0.055 Sum_probs=35.5
Q ss_pred CCCEEeccCCCCChHHHHHHHhhCCCCCCccEE-EccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 402 KLVNINISKNRGGVETAKFLSKLMPLAPELVEV-NAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 402 ~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L-~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.|++++|.++.-.... ...++++++ .+++|.|+.-.. .++.. ..+|+.|+|++|.+
T Consensus 154 ~l~~L~l~~n~l~~i~~~~-----~~~~~l~~~~~l~~n~l~~l~~----~~f~~-l~~L~~L~Ls~N~l 213 (242)
T d1xwdc1 154 ESVILWLNKNGIQEIHNCA-----FNGTQLDELNLSDNNNLEELPN----DVFHG-ASGPVILDISRTRI 213 (242)
T ss_dssp SCEEEECCSSCCCEECTTT-----TTTCCEEEEECTTCTTCCCCCT----TTTTT-SCCCSEEECTTSCC
T ss_pred cceeeeccccccccccccc-----ccchhhhccccccccccccccH----HHhcC-CCCCCEEECCCCcC
Confidence 5778888888886532211 122455444 567777764221 12333 25799999999987
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=1.7e-05 Score=73.29 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=40.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEE-eccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNI-NISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~L-dLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
..++.|++++|+++..... .-....++++ ++++|.++.-.. .++...++|++|+|++|.|..
T Consensus 153 ~~l~~L~l~~n~l~~i~~~-----~~~~~~l~~~~~l~~n~l~~l~~----~~f~~l~~L~~L~Ls~N~l~~ 215 (242)
T d1xwdc1 153 FESVILWLNKNGIQEIHNC-----AFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTRIHS 215 (242)
T ss_dssp SSCEEEECCSSCCCEECTT-----TTTTCCEEEEECTTCTTCCCCCT----TTTTTSCCCSEEECTTSCCCC
T ss_pred ccceeeecccccccccccc-----cccchhhhccccccccccccccH----HHhcCCCCCCEEECCCCcCCc
Confidence 4678889999988764321 1223455555 567777764221 234556889999999999974
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00013 Score=63.56 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=25.2
Q ss_pred HhCCCCCCEEEccCC-CCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 285 LSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 285 L~~~~sL~~L~LS~N-~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
+...++|++|+|++| .|+.-... + +...++|+.|+|++|+|+.
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~----~-f~~l~~L~~L~Ls~N~l~~ 70 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELR----D-LRGLGELRNLTIVKSGLRF 70 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----G-SCSCCCCSEEECCSSCCCE
T ss_pred ccCccccCeeecCCCccccccCch----h-hccccccCcceeeccccCC
Confidence 345567777777655 36554332 1 2345677777777777763
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00014 Score=63.24 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 400 ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 400 n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...|++|+|++|.|+.-... ++...++|++|+|++|.|..-.. .++. + .+|+.|+|++|+|
T Consensus 55 l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~l~~----~~~~-~-~~l~~L~L~~Np~ 115 (156)
T d2ifga3 55 LGELRNLTIVKSGLRFVAPD----AFHFTPRLSRLNLSFNALESLSW----KTVQ-G-LSLQELVLSGNPL 115 (156)
T ss_dssp CCCCSEEECCSSCCCEECTT----GGGSCSCCCEEECCSSCCSCCCS----TTTC-S-CCCCEEECCSSCC
T ss_pred ccccCcceeeccccCCcccc----cccccccccceeccCCCCcccCh----hhhc-c-ccccccccCCCcc
Confidence 34556666666655443222 22333556666666666653111 0111 1 2466667776666
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=97.19 E-value=0.00058 Score=65.09 Aligned_cols=95 Identities=22% Similarity=0.132 Sum_probs=51.4
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHh
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK 369 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~ 369 (507)
++++|||++|+|+.-. ...++|++|+|++|.|+. ++. . ..+|++|.+.+++. ..+.
T Consensus 39 ~l~~LdLs~~~L~~lp---------~~~~~L~~L~Ls~N~l~~-lp~--------~---~~~L~~L~l~~n~l--~~l~- 94 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLP---------ELPPHLESLVASCNSLTE-LPE--------L---PQSLKSLLVDNNNL--KALS- 94 (353)
T ss_dssp TCSEEECTTSCCSCCC---------SCCTTCSEEECCSSCCSS-CCC--------C---CTTCCEEECCSSCC--SCCC-
T ss_pred CCCEEEeCCCCCCCCC---------CCCCCCCEEECCCCCCcc-ccc--------c---hhhhhhhhhhhccc--chhh-
Confidence 5677777777765311 123567777777777763 111 1 12355555555540 0010
Q ss_pred hhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCC
Q 010572 370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 414 (507)
Q Consensus 370 ~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~ 414 (507)
.+...|++|+|++|.|.... .......|++|++++|.+.
T Consensus 95 ~lp~~L~~L~L~~n~l~~lp------~~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 95 DLPPLLEYLGVSNNQLEKLP------ELQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp SCCTTCCEEECCSSCCSSCC------CCTTCTTCCEEECCSSCCS
T ss_pred hhcccccccccccccccccc------chhhhccceeecccccccc
Confidence 11245778888887776431 1123456778888777664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00015 Score=63.44 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=35.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH---HHHHHHhhCCCCCCccEEE
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE---TAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~---g~~~L~~~L~~n~~L~~L~ 435 (507)
.+|+.|+|++|.|++... +.. + ....|++|++++|++... ...+...+++..|+|+.||
T Consensus 91 ~~L~~L~Ls~N~i~~l~~--l~~-l-~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 91 PNLKILNLSGNELKSERE--LDK-I-KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp TTCCCCCCTTSCCCCGGG--HHH-H-TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred CcccccccccCccccchh--hhh-h-hccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 456667777777765432 111 1 234577777787777542 3445555666667777775
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.015 Score=45.87 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHhccCCCCCCcccCCChhhHHHHHhcCCchhhhhhhccCCccccCCCCCCCcccccCcccccCCCccHHHHHHH
Q 010572 12 ALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLF 91 (507)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 91 (507)
+.++++.+. .--..-.+..||.|++..|+..|||.-|-.+.. +.-.+ +.=+++ +..||+.|
T Consensus 3 ~~~~~~~~~-p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~-----vcr~w----------~~l~~~---~~lW~~~~ 63 (102)
T d2ovrb1 3 VKHMMQVIE-PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQ-----TCRYW----------RILAED---NLLWREKC 63 (102)
T ss_dssp HHHHHHHHC-CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTT-----SCHHH----------HHHHTC---SHHHHHHH
T ss_pred HHHHHHHcC-chhccCChhhCCHHHHHHHHHcCCHHHHHHHHH-----HHHHH----------HHHHCC---HHHHHHHH
Confidence 356666664 000124468899999999999999986553331 00000 000111 24699999
Q ss_pred hcccCcccCCCC----------CCcHHHHHHHHHH
Q 010572 92 KTRWSGFTDQIE----------PVDWQQRYWEAHV 116 (507)
Q Consensus 92 ~~~w~~~~~~~~----------~~~w~~~~~e~hl 116 (507)
+.+|.....+.. ..+||++|=++|-
T Consensus 64 ~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~~~ 98 (102)
T d2ovrb1 64 KEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR 98 (102)
T ss_dssp TTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHH
T ss_pred HHcCCCCchHHHhhhcccCCCCCcCHHHHHHHHHH
Confidence 988755211111 4579999977763
|