Citrus Sinensis ID: 010585

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
ccHHHHHHHHHHHHccccccccccEEEEcccccccEEEcccHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccEEEcccccccccccccEEEEccccccccccccccccEEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEcccccHHHHHHHHccEEccccccccccccccccEEEEEEEEccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccc
ccHHHHHHHHHHHHHHHcccccccEEEEcccccccEEEEccccHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEccccccccEEEcEEEEEcccccccccEccccEEEEEcccccccccEEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHcccEEEEEEcHHHHHHHHHHHccEEEEccccccHHHcccccEEEEEEccccEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
MASFVGAMAIADLVKttlgpkgmdkilqstgrgrevtvtndgATILkslhidnpaAKVLVDIskvqddevgdgTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIkkpggslkdsfldegfildkkigigqpkriENAKILVAntamdtdkvkiYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVnrqliynfpeelfaDAGILAIEHADFDGIERLALVTggeiastfdnpesvklghCKLIEEImigedklihfsgveMGQACTIVLRGASHHVLDEAERSLHDALCVLSqtvndsrvlfgggwpeMVMAKEVDELarktpgkksHAIEAFSRALVAIpttiadnaglDSAELIAQLRAEHqkegcpagidvisgsvgdmaelgiseSFKVKQAVLLSATEAAEMILRVDEIitcaprrredrm
MASFVGAMAIADlvkttlgpkgmDKILqstgrgrevtVTNDGATILKSLHIDNPAAKVLVDISKvqddevgdgTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIqiikkpggslkdSFLDEGFILdkkigigqpkrieNAKIlvantamdtdkvkIYGARVRVDSMSKAaeiegaekqkMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEiastfdnpesvkLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAaemilrvdeiitcaprrredrm
MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
****VGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRV********************VQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVD***********HAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA********
MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEI************
MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELA*********AIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCA********
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MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query507 2.2.26 [Sep-21-2011]
Q4R6F8535 T-complex protein 1 subun N/A no 0.992 0.940 0.697 0.0
P78371535 T-complex protein 1 subun yes no 0.992 0.940 0.697 0.0
Q3ZBH0535 T-complex protein 1 subun yes no 0.992 0.940 0.693 0.0
P80314535 T-complex protein 1 subun yes no 0.992 0.940 0.697 0.0
Q5XIM9535 T-complex protein 1 subun yes no 0.992 0.940 0.697 0.0
Q54ES9532 T-complex protein 1 subun yes no 0.996 0.949 0.647 0.0
Q10147527 Probable T-complex protei yes no 0.996 0.958 0.666 0.0
P39076527 T-complex protein 1 subun yes no 0.986 0.948 0.629 1e-180
P47207529 T-complex protein 1 subun yes no 0.986 0.945 0.619 1e-179
Q8SQP2508 T-complex protein 1 subun yes no 0.948 0.946 0.473 1e-122
>sp|Q4R6F8|TCPB_MACFA T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3 Back     alignment and function desciption
 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/503 (69%), Positives = 428/503 (85%)

Query: 1   MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLV 60
           + SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLV
Sbjct: 26  LTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLV 85

Query: 61  DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKV 120
           D+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A + AR+ALL   
Sbjct: 86  DMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSA 145

Query: 121 VDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKP 180
           VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS NLE+I IIKK 
Sbjct: 146 VDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHIIKKL 205

Query: 181 GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAA 240
           GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K A
Sbjct: 206 GGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVA 265

Query: 241 EIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 300
           EIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLAL
Sbjct: 266 EIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLAL 325

Query: 301 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE 360
           VTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDE
Sbjct: 326 VTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDE 385

Query: 361 AERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVA 420
           AERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++AL  
Sbjct: 386 AERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRM 445

Query: 421 IPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLL 480
           +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDMA LGI+ESF+VK+ VLL
Sbjct: 446 LPTIIADNAGYDSADLVAQLRAAHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLL 505

Query: 481 SATEAAEMILRVDEIITCAPRRR 503
           SA EAAE+ILRVD II  APR+R
Sbjct: 506 SAAEAAEVILRVDNIIKAAPRKR 528
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Macaca fascicularis (taxid: 9541)
>sp|P78371|TCPB_HUMAN T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4 Back     alignment and function description
>sp|Q3ZBH0|TCPB_BOVIN T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=1 SV=3 Back     alignment and function description
>sp|P80314|TCPB_MOUSE T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4 Back     alignment and function description
>sp|Q5XIM9|TCPB_RAT T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3 Back     alignment and function description
>sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1 Back     alignment and function description
>sp|Q10147|TCPB_SCHPO Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct2 PE=3 SV=1 Back     alignment and function description
>sp|P39076|TCPB_YEAST T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT2 PE=1 SV=1 Back     alignment and function description
>sp|P47207|TCPB_CAEEL T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=1 SV=2 Back     alignment and function description
>sp|Q8SQP2|TCPB_ENCCU T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi (strain GB-M1) GN=CCT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
449446604527 PREDICTED: T-complex protein 1 subunit b 1.0 0.962 0.942 0.0
225459806527 PREDICTED: T-complex protein 1 subunit b 1.0 0.962 0.948 0.0
449488048534 PREDICTED: T-complex protein 1 subunit b 1.0 0.949 0.929 0.0
302399079527 TCP domain class transcription factor [M 1.0 0.962 0.934 0.0
356539292527 PREDICTED: T-complex protein 1 subunit b 1.0 0.962 0.932 0.0
224055611518 predicted protein [Populus trichocarpa] 0.998 0.976 0.928 0.0
356542726527 PREDICTED: T-complex protein 1 subunit b 1.0 0.962 0.932 0.0
357505883527 T-complex protein 1 subunit beta [Medica 1.0 0.962 0.925 0.0
242052451525 hypothetical protein SORBIDRAFT_03g00949 1.0 0.965 0.911 0.0
224068705527 predicted protein [Populus trichocarpa] 1.0 0.962 0.911 0.0
>gi|449446604|ref|XP_004141061.1| PREDICTED: T-complex protein 1 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/507 (94%), Positives = 496/507 (97%)

Query: 1   MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLV 60
           MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGR+VTVTNDGATILKSLHIDNPAAKVLV
Sbjct: 21  MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRQVTVTNDGATILKSLHIDNPAAKVLV 80

Query: 61  DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKV 120
           DISKVQDDEVGDGTTSVVVLAGELLREAEKLVA+KIHPMTII+G+RMAAECAR+ALLQKV
Sbjct: 81  DISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMAAECARNALLQKV 140

Query: 121 VDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKP 180
           VDNK + E FKSDL+KIAMTTLSSKILSQDKEHF +LAVDAVMRLKGSTNLESIQIIKKP
Sbjct: 141 VDNKADLEKFKSDLLKIAMTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESIQIIKKP 200

Query: 181 GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAA 240
           GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSK A
Sbjct: 201 GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKVA 260

Query: 241 EIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 300
           EIEGAEK+KMREKV+KII HGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL
Sbjct: 261 EIEGAEKEKMREKVKKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 320

Query: 301 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE 360
           VTGGEIASTFDNPESVKLG+CKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE
Sbjct: 321 VTGGEIASTFDNPESVKLGYCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE 380

Query: 361 AERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVA 420
           AERSLHDALCVLSQTVNDSRV+ GGGWPEM+M+KEVDELARKTPGKKSHAIEAFSRAL A
Sbjct: 381 AERSLHDALCVLSQTVNDSRVVLGGGWPEMIMSKEVDELARKTPGKKSHAIEAFSRALQA 440

Query: 421 IPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLL 480
           IPT IADNAGLDSA+LIAQLRAEH KEGC AGIDVI+GSVGDMAELGISE+FKVKQA+LL
Sbjct: 441 IPTIIADNAGLDSADLIAQLRAEHHKEGCNAGIDVITGSVGDMAELGISEAFKVKQAILL 500

Query: 481 SATEAAEMILRVDEIITCAPRRREDRM 507
           SATEAAEMILRVDEIITCAPRRREDRM
Sbjct: 501 SATEAAEMILRVDEIITCAPRRREDRM 527

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459806|ref|XP_002285912.1| PREDICTED: T-complex protein 1 subunit beta [Vitis vinifera] gi|302141688|emb|CBI18891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449488048|ref|XP_004157926.1| PREDICTED: T-complex protein 1 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302399079|gb|ADL36834.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356539292|ref|XP_003538133.1| PREDICTED: T-complex protein 1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|224055611|ref|XP_002298565.1| predicted protein [Populus trichocarpa] gi|222845823|gb|EEE83370.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356542726|ref|XP_003539816.1| PREDICTED: T-complex protein 1 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|357505883|ref|XP_003623230.1| T-complex protein 1 subunit beta [Medicago truncatula] gi|355498245|gb|AES79448.1| T-complex protein 1 subunit beta [Medicago truncatula] Back     alignment and taxonomy information
>gi|242052451|ref|XP_002455371.1| hypothetical protein SORBIDRAFT_03g009490 [Sorghum bicolor] gi|241927346|gb|EES00491.1| hypothetical protein SORBIDRAFT_03g009490 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|224068705|ref|XP_002326179.1| predicted protein [Populus trichocarpa] gi|222833372|gb|EEE71849.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
TAIR|locus:2147132527 AT5G20890 [Arabidopsis thalian 1.0 0.962 0.905 1.9e-241
UNIPROTKB|Q5F424535 CCT2 "Uncharacterized protein" 0.992 0.940 0.709 1.1e-188
UNIPROTKB|E2QSH7535 CCT2 "Uncharacterized protein" 0.992 0.940 0.697 1.2e-186
UNIPROTKB|F6V0D8535 CCT2 "Uncharacterized protein" 0.992 0.940 0.697 1.2e-186
UNIPROTKB|P78371535 CCT2 "T-complex protein 1 subu 0.992 0.940 0.697 1.5e-186
UNIPROTKB|B6V9S9535 CCT2 "Uncharacterized protein" 0.992 0.940 0.697 1.5e-186
UNIPROTKB|D0G0C8535 CCT2 "Chaperonin containing TC 0.992 0.940 0.695 1.9e-186
MGI|MGI:107186535 Cct2 "chaperonin containing Tc 0.992 0.940 0.697 5e-186
UNIPROTKB|Q3ZBH0535 CCT2 "T-complex protein 1 subu 0.992 0.940 0.693 1e-185
ZFIN|ZDB-GENE-020419-6535 cct2 "chaperonin containing TC 0.992 0.940 0.691 1e-185
TAIR|locus:2147132 AT5G20890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2327 (824.2 bits), Expect = 1.9e-241, P = 1.9e-241
 Identities = 459/507 (90%), Positives = 488/507 (96%)

Query:     1 MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLV 60
             MASFVGAMAI+DLVK+TLGPKGMDKILQSTGRG  VTVTNDGATILKSLHIDNPAAKVLV
Sbjct:    21 MASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNPAAKVLV 80

Query:    61 DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKV 120
             DISKVQDDEVGDGTTSVVVLAGELLREAEKLVA+KIHPMTII+G+RMA+ECAR+ALL++V
Sbjct:    81 DISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECARNALLKRV 140

Query:   121 VDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKP 180
             +DNK+NAE F+SDL+KIAMTTL SKILSQDKEHF ++AVDAV RLKGSTNLE+IQIIKKP
Sbjct:   141 IDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGSTNLEAIQIIKKP 200

Query:   181 GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAA 240
             GGSLKDSFLDEGFILDKKIGIGQPKRIENA ILVANTAMDTDKVKIYGARVRVDSM+K A
Sbjct:   201 GGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMDTDKVKIYGARVRVDSMTKVA 260

Query:   241 EIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 300
             EIEGAEK+KM++KV+KII HGINCFVNRQLIYNFPEELFADAGILAIEHADF+GIERL L
Sbjct:   261 EIEGAEKEKMKDKVKKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFEGIERLGL 320

Query:   301 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE 360
             VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSG EMGQAC+IVLRGASHHVLDE
Sbjct:   321 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGCEMGQACSIVLRGASHHVLDE 380

Query:   361 AERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVA 420
             AERSLHDALCVLSQTVND+RVL GGGWPEMVMAKEVDELARKT GKKSHAIEAFSRALVA
Sbjct:   381 AERSLHDALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELARKTAGKKSHAIEAFSRALVA 440

Query:   421 IPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLL 480
             IPTTIADNAGLDSAEL+AQLRAEH  EGC AGIDVI+G+VGDM E GI E+FKVKQAVLL
Sbjct:   441 IPTTIADNAGLDSAELVAQLRAEHHTEGCNAGIDVITGAVGDMEERGIYEAFKVKQAVLL 500

Query:   481 SATEAAEMILRVDEIITCAPRRREDRM 507
             SATEA+EMILRVDEIITCAPRRREDRM
Sbjct:   501 SATEASEMILRVDEIITCAPRRREDRM 527
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
UNIPROTKB|Q5F424 CCT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSH7 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6V0D8 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P78371 CCT2 "T-complex protein 1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B6V9S9 CCT2 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|D0G0C8 CCT2 "Chaperonin containing TCP1, subunit 2 (Beta)" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:107186 Cct2 "chaperonin containing Tcp1, subunit 2 (beta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBH0 CCT2 "T-complex protein 1 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-6 cct2 "chaperonin containing TCP1, subunit 2 (beta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T4THSB_SULACNo assigned EC number0.37050.95850.8788yesno
Q10147TCPB_SCHPONo assigned EC number0.66660.99600.9582yesno
P47207TCPB_CAEELNo assigned EC number0.61980.98610.9451yesno
Q54ES9TCPB_DICDINo assigned EC number0.64750.99600.9492yesno
P48424THSA_THEACNo assigned EC number0.37950.94870.8825yesno
O30561THS1_HALVDNo assigned EC number0.38330.95460.8642yesno
Q3ZBH0TCPB_BOVINNo assigned EC number0.69380.99210.9401yesno
P78371TCPB_HUMANNo assigned EC number0.69780.99210.9401yesno
Q9V2S9THSA_SULSONo assigned EC number0.38920.98610.8944yesno
Q8SQP2TCPB_ENCCUNo assigned EC number0.47300.94870.9468yesno
Q9V2Q7THS_PYRABNo assigned EC number0.38090.96440.8890yesno
P80314TCPB_MOUSENo assigned EC number0.69780.99210.9401yesno
O24735THSB_SULTONo assigned EC number0.38040.94670.8695yesno
O26885THSB_METTHNo assigned EC number0.38940.94470.8903yesno
O57762THS_PYRHONo assigned EC number0.38290.96440.8907yesno
O28821THSB_ARCFUNo assigned EC number0.38010.96250.8954yesno
Q52500THSB_PYRKONo assigned EC number0.38530.96440.8956yesno
Q5XIM9TCPB_RATNo assigned EC number0.69780.99210.9401yesno
Q9YA66THSB_AERPENo assigned EC number0.38820.95850.8868yesno
P50016THS_METKANo assigned EC number0.38090.96440.8972yesno
Q4R6F8TCPB_MACFANo assigned EC number0.69780.99210.9401N/Ano
P39076TCPB_YEASTNo assigned EC number0.62940.98610.9487yesno
Q58405THS_METJANo assigned EC number0.37020.94870.8874yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
  ••••••0.765
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
  ••••••0.761
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.744
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
  ••••••0.702
GSVIVG00018888001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (535 aa)
  ••••••0.699
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
  ••••••0.679
GSVIVG00016108001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (562 aa)
  ••••••0.674
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
  ••••••0.662
GSVIVG00037695001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)
  ••    0.618
GSVIVG00017910001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)
  ••    0.608

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 0.0
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 0.0
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-160
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-149
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-147
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-137
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-131
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-129
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-126
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-123
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-122
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-114
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-110
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-101
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 1e-92
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 7e-81
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 7e-79
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 7e-76
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 1e-69
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-62
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-42
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 2e-41
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-15
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 7e-15
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-13
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 6e-13
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 9e-13
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 2e-12
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 3e-12
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 3e-12
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 8e-11
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 9e-11
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 2e-10
CHL00093529 CHL00093, groEL, chaperonin GroEL 8e-07
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 4e-05
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 8e-05
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 9e-05
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.002
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 0.004
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 0.004
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information 
 Score =  944 bits (2441), Expect = 0.0
 Identities = 385/502 (76%), Positives = 439/502 (87%)

Query: 1   MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLV 60
           ++SFVGA+AI DLVKTTLGPKGMDKILQS GR   VTVTNDGATILKS+ +DNPAAKVLV
Sbjct: 16  LSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLV 75

Query: 61  DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKV 120
           DISKVQDDEVGDGTTSV VLA ELLREAEKLVA KIHP TII G+RMA   AR+ALL   
Sbjct: 76  DISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSA 135

Query: 121 VDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKP 180
           VD+  + E F+ DL+ IA TTLSSKIL+QDKEHF +LAVDAV+RLKGS NL++IQIIKK 
Sbjct: 136 VDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKL 195

Query: 181 GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAA 240
           GGSLKDS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+GA+VRVDS +K A
Sbjct: 196 GGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVA 255

Query: 241 EIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 300
           EIE AEK+KM+ KV+KI+ HGINCF+NRQLIYN+PE+LFADAGI+AIEHADFDG+ERLAL
Sbjct: 256 EIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLAL 315

Query: 301 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE 360
           VTGGEIASTFD+PE VKLG CKLIEEIMIGEDKLI FSGV  G+ACTIVLRGAS  +LDE
Sbjct: 316 VTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDE 375

Query: 361 AERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVA 420
           AERSLHDALCVL+QTV D+RV+ GGG  EM+MAK V+ELA+KTPGKKS AIEAF++AL  
Sbjct: 376 AERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQ 435

Query: 421 IPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLL 480
           +PT IADNAG DSAEL+AQLRA H      AG+D+  G+VGDM ELGI+ESFKVK+ VLL
Sbjct: 436 LPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLL 495

Query: 481 SATEAAEMILRVDEIITCAPRR 502
           SA+EAAEMILRVD+II CAPR+
Sbjct: 496 SASEAAEMILRVDDIIKCAPRK 517

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 507
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.82
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information 
Probab=100.00  E-value=3e-108  Score=869.72  Aligned_cols=498  Identities=77%  Similarity=1.126  Sum_probs=478.3

Q ss_pred             ccHHHHHHHHHHhhhcCCCcccccccccc--CCCCceEEecChHHHhhhccccChHhHHHHHHHhhcccccCCCchHHHH
Q 010585            2 ASFVGAMAIADLVKTTLGPKGMDKILQST--GRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVV   79 (507)
Q Consensus         2 ~n~~~~~~l~~~v~sslGP~G~~k~i~~~--~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vl   79 (507)
                      +|+.||..++++++|||||+||+|||+++  .  |+++|||||+||+++|+++||+++|++++|++|++++||||||+|+
T Consensus        17 ~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~--g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTTtvvv   94 (517)
T cd03336          17 SSFVGAIAIGDLVKTTLGPKGMDKILQSVGRS--GGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTV   94 (517)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcCceEeecCCCC--CCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhCCChhHHHH
Confidence            58999999999999999999999999997  5  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHhhcccccccchhHHHHHHH
Q 010585           80 LAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAV  159 (507)
Q Consensus        80 L~~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~l~~lv~  159 (507)
                      |+++||+++.+|+++|+||+.|++||+.|.+.+++.|+++++|++.+.+.+++.|+++++|+++||+.+.++++|+++++
T Consensus        95 La~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~  174 (517)
T cd03336          95 LAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAV  174 (517)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988543222357899999999999999999999999999


Q ss_pred             HHHHhhccCCCcccceeeecCCCCCCCceeeeeEEEeecCCCCCCccccCccEEEeeeccccccccccCeEEEEcCHHHH
Q 010585          160 DAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKA  239 (507)
Q Consensus       160 ~a~~~~~~~~~~~~I~i~~~~g~~~~dS~l~~Givl~~~~~~~~~~~~~n~~I~l~~~~L~~~~~~~~~~~~~i~~~~~l  239 (507)
                      +|+..+++.+++++|++++++|++++||++++|+++++++.+.||++++||||++++++|++++++.++.++.+++++++
T Consensus       175 ~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~  254 (517)
T cd03336         175 DAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKV  254 (517)
T ss_pred             HHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccCceEEeCCHHHH
Confidence            99999987888999999999999999999999999999876678999999999999999999998875578899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeeccccCCCCCCCcc
Q 010585          240 AEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLG  319 (507)
Q Consensus       240 ~~l~~~e~~~l~~~~~~i~~~~v~lvl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG  319 (507)
                      ..+++.|+++++++++.|++.++++++++++|+|.+++||.++||++++++++++|+|||++|||+++++++++++..+|
T Consensus       255 ~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG  334 (517)
T cd03336         255 AEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLG  334 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEEcCeEEEEEEccCCCceeEEEecCCcHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHH
Q 010585          320 HCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDEL  399 (507)
Q Consensus       320 ~~~~v~~~~ig~~~~~~~~~~~~~~~~Till~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~  399 (507)
                      +|+.|++..+|+++|++|++|++++.|||+|||+|+.+++|.+|+++||+++++++++++++|||||++|++++++|+++
T Consensus       335 ~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~  414 (517)
T cd03336         335 TCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEEL  414 (517)
T ss_pred             ccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCChhHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHHcCCCceeEEcCCCcccccccCCcccchHHHHHHH
Q 010585          400 ARKTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVL  479 (507)
Q Consensus       400 ~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~~l  479 (507)
                      ++..++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||++.|||||+.+|+++|
T Consensus       415 ~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l  494 (517)
T cd03336         415 AKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVL  494 (517)
T ss_pred             hhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHH
Confidence            88889999999999999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHhhhcCCC
Q 010585          480 LSATEAAEMILRVDEIITCAPR  501 (507)
Q Consensus       480 ~~A~e~a~~iL~iD~iI~~~~~  501 (507)
                      +.|+|+|++|||||++|.++|+
T Consensus       495 ~~A~e~a~~iL~id~ii~~~~~  516 (517)
T cd03336         495 LSASEAAEMILRVDDIIKCAPR  516 (517)
T ss_pred             HHHHHHHHHHHhHhHHhhcCCC
Confidence            9999999999999999999773

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 0.0
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 2e-88
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-87
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-87
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-86
1a6d_A545 Thermosome From T. Acidophilum Length = 545 4e-83
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-82
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 6e-81
3izh_A513 Mm-Cpn D386a With Atp Length = 513 1e-80
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 2e-80
1a6d_B543 Thermosome From T. Acidophilum Length = 543 3e-80
3izi_A513 Mm-Cpn Rls With Atp Length = 513 3e-80
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-78
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-77
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 2e-77
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 5e-77
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-76
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-75
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-75
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-74
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-72
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 3e-71
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-70
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-63
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-59
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-55
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-48
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-42
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-40
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-28
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-22
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 4e-17
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 2e-12
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-07
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 7e-12
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 2e-11
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 4e-11
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 5e-10
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 2e-09
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 3e-09
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 3e-09
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 3e-09
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 3e-09
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 3e-09
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 3e-09
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 3e-09
1ss8_A524 Groel Length = 524 3e-09
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 3e-09
1oel_A547 Conformational Variability In The Refined Structure 3e-09
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 3e-09
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 3e-09
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 3e-09
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure 
Iteration: 1

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/501 (69%), Positives = 426/501 (85%)
Query: 1   MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLV 60
           ++SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLV
Sbjct: 13  LSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLV 72
Query: 61  DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKV 120
           D+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A + AR ALL   
Sbjct: 73  DMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSA 132
Query: 121 VDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKP 180
           VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS NLE+I +IKK 
Sbjct: 133 VDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKL 192
Query: 181 GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAA 240
           GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K A
Sbjct: 193 GGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVA 252
Query: 241 EIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 300
           EIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLAL
Sbjct: 253 EIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLAL 312
Query: 301 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE 360
           VTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDE
Sbjct: 313 VTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDE 372
Query: 361 AERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVA 420
           AERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++AL  
Sbjct: 373 AERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRM 432
Query: 421 IPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLL 480
           +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDM+ LGI+ESF+VK+ VLL
Sbjct: 433 LPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLL 492
Query: 481 SATEAAEMILRVDEIITCAPR 501
           SA EAAE+ILRVD II  APR
Sbjct: 493 SAAEAAEVILRVDNIIKAAPR 513
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-176
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-176
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-167
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-157
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-34
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 1e-26
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 1e-12
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 2e-12
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 3e-12
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 3e-05
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
 Score =  736 bits (1902), Expect = 0.0
 Identities = 348/501 (69%), Positives = 426/501 (85%)

Query: 1   MASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLV 60
           ++SF+GA+AI DLVK+TLGPKGMDKIL S+GR   + VTNDGATILK++ +DNPAAKVLV
Sbjct: 13  LSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLV 72

Query: 61  DISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKV 120
           D+S+VQDDEVGDGTTSV VLA ELLREAE L+A KIHP TII+G+R A + AR ALL   
Sbjct: 73  DMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSA 132

Query: 121 VDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTNLESIQIIKKP 180
           VD+  +   F+ DLM IA TTLSSK+L+  K+HF +LAV+AV+RLKGS NLE+I +IKK 
Sbjct: 133 VDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKL 192

Query: 181 GGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAA 240
           GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K A
Sbjct: 193 GGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVA 252

Query: 241 EIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLAL 300
           EIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLAL
Sbjct: 253 EIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLAL 312

Query: 301 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDE 360
           VTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDE
Sbjct: 313 VTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDE 372

Query: 361 AERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSRALVA 420
           AERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++AL  
Sbjct: 373 AERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRM 432

Query: 421 IPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLL 480
           +PT IADNAG DSA+L+AQLRA H +    AG+D+  G++GDM+ LGI+ESF+VK+ VLL
Sbjct: 433 LPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLL 492

Query: 481 SATEAAEMILRVDEIITCAPR 501
           SA EAAE+ILRVD II  APR
Sbjct: 493 SAAEAAEVILRVDNIIKAAPR 513
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 98.41
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 98.34
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 98.25
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
Probab=100.00  E-value=8.2e-113  Score=900.45  Aligned_cols=500  Identities=70%  Similarity=1.068  Sum_probs=478.9

Q ss_pred             ccHHHHHHHHHHhhhcCCCccccccccccCCCCceEEecChHHHhhhccccChHhHHHHHHHhhcccccCCCchHHHHHH
Q 010585            2 ASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLA   81 (507)
Q Consensus         2 ~n~~~~~~l~~~v~sslGP~G~~k~i~~~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlL~   81 (507)
                      +|+.||+.|+++|+|||||+||+|||+++...|+++|||||+|||++|+++||+|+|++++|++|++++||||||+++|+
T Consensus        14 ~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e~GDGTTtvvVLA   93 (513)
T 3iyg_B           14 SSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLA   93 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhhhCCChhhhHHHH
Confidence            69999999999999999999999999997211899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHhhcccccccchhHHHHHHHHH
Q 010585           82 GELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDA  161 (507)
Q Consensus        82 ~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~l~~lv~~a  161 (507)
                      ++||+++.+++.+|+||+.|++||++|++.+++.|+++++|++.+.+.+++.|.++++|+++||+.++++++|++++++|
T Consensus        94 ~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~~~~~~~~i~~livdA  173 (513)
T 3iyg_B           94 AELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA  173 (513)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhcccccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999873311236789999999999999999999999999999


Q ss_pred             HHhhccCCCcccceeeecCCCCCCCceeeeeEEEeecCCCCCCccccCccEEEeeeccccccccccCeEEEEcCHHHHHH
Q 010585          162 VMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAE  241 (507)
Q Consensus       162 ~~~~~~~~~~~~I~i~~~~g~~~~dS~l~~Givl~~~~~~~~~~~~~n~~I~l~~~~L~~~~~~~~~~~~~i~~~~~l~~  241 (507)
                      +.++++++|+++|+|++++||+.+||++++|++|++++.+.||++++||||++++++|++++++..++++.+++++++.+
T Consensus       174 v~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~m~~~~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~  253 (513)
T 3iyg_B          174 VLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAE  253 (513)
T ss_pred             HHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCCCceeecCceEEEEcCCcccccccccCCceEEcCHHHHHH
Confidence            99998888899999999999999999999999999998666999999999999999999999882247889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeeccccCCCCCCCcccc
Q 010585          242 IEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHC  321 (507)
Q Consensus       242 l~~~e~~~l~~~~~~i~~~~v~lvl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~  321 (507)
                      +.+.|+++++.++++|++.|++||+++++|++.+++||.++||++++++++.+|+|||++|||+++++++++++.++|+|
T Consensus       254 ~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a  333 (513)
T 3iyg_B          254 IEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSC  333 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCEEecccccCCHhHCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEcCeEEEEEEccCCCceeEEEecCCcHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHhh
Q 010585          322 KLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELAR  401 (507)
Q Consensus       322 ~~v~~~~ig~~~~~~~~~~~~~~~~Till~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~  401 (507)
                      +.|++..+|+++|++|+||+++++|||+|||+|+.+++|.||+++||++++|++++++++|||||++|++++.+|++++.
T Consensus       334 ~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpGGGa~e~~~~~~L~~~~~  413 (513)
T 3iyg_B          334 KLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLAS  413 (513)
T ss_pred             cEEEEEEECCeEEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCCcHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHHcCCCceeEEcCCCcccccccCCcccchHHHHHHHHH
Q 010585          402 KTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLS  481 (507)
Q Consensus       402 ~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~~l~~  481 (507)
                      +.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..+++++|||+.+|++.||++.|||||+.||+++|+.
T Consensus       414 ~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~  493 (513)
T 3iyg_B          414 RTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLS  493 (513)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhccCEecHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHhhhcCCC
Q 010585          482 ATEAAEMILRVDEIITCAPR  501 (507)
Q Consensus       482 A~e~a~~iL~iD~iI~~~~~  501 (507)
                      |+|+|+||||||++|.+.|+
T Consensus       494 A~~~a~~iL~id~ii~~~~~  513 (513)
T 3iyg_B          494 AAEAAEVILRVDNIIKAAPR  513 (513)
T ss_pred             HHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999998764
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 507
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 1e-32
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 2e-32
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 2e-32
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 4e-32
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-31
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-29
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-28
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-27
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-23
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-17
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-21
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 1e-18
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-18
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 8e-05
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 1e-17
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 6e-17
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 5e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 6e-07
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  120 bits (302), Expect = 1e-32
 Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 186 DSFLDEGFILDKKI-GIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEG 244
           DS +  G +++K +      + I+N +I++ +++++  K +     + +        I  
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQ 59

Query: 245 AEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGG 304
            E++ + +  + II    +  +  + I +  +     A + AI         R+A   G 
Sbjct: 60  MEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGA 119

Query: 305 EIASTFDNP-ESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRG 352
            I S  +   E        L+E   IG++     +  +  +ACTI+LRG
Sbjct: 120 RIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.97
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.94
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.53
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.52
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.42
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 98.42
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 98.38
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 98.33
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 98.15
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 92.42
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 91.76
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 91.1
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 89.81
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 88.86
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 81.25
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=4.6e-54  Score=407.48  Aligned_cols=238  Identities=41%  Similarity=0.672  Sum_probs=227.7

Q ss_pred             ccHHHHHHHHHHhhhcCCCccccccccccCCCCceEEecChHHHhhhccccChHhHHHHHHHhhcccccCCCchHHHHHH
Q 010585            2 ASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLA   81 (507)
Q Consensus         2 ~n~~~~~~l~~~v~sslGP~G~~k~i~~~~~~g~~~iTnDg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlL~   81 (507)
                      .|++||+.++++|++||||+|++|||+++.  |++++||||+||++++.++||+++++.+++++|++++||||||+++|+
T Consensus         6 ~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~--g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~vl~   83 (243)
T d1a6db1           6 ENIEAAIAISNSVRSSLGPRGMDKMLVDSL--GDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIA   83 (243)
T ss_dssp             HHHHHHHHHHHHHHTTSSTTCCCEEEECTT--CCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCCCCCeEEEECCC--CCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHHHH
Confidence            599999999999999999999999999997  999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccccCCChhhhHHHHHHHHHHhhcccccccchhHHHHHHHHH
Q 010585           82 GELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDA  161 (507)
Q Consensus        82 ~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~l~~lv~~a  161 (507)
                      ++||+++.+++..|+||..|.+||+.|++.+++.|++++.++...                                   
T Consensus        84 ~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~-----------------------------------  128 (243)
T d1a6db1          84 GGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYA-----------------------------------  128 (243)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEE-----------------------------------
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccc-----------------------------------
Confidence            999999999999999999999999999999999887766553321                                   


Q ss_pred             HHhhccCCCcccceeeecCCCCCCCceeeeeEEEeecCCCCCCccccCccEEEeeeccccccccccCeEEEEcCHHHHHH
Q 010585          162 VMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAE  241 (507)
Q Consensus       162 ~~~~~~~~~~~~I~i~~~~g~~~~dS~l~~Givl~~~~~~~~~~~~~n~~I~l~~~~L~~~~~~~~~~~~~i~~~~~l~~  241 (507)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHcCCeEEecCChhhHHHHHHHhCCeeccccCCCCCCCcccc
Q 010585          242 IEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHC  321 (507)
Q Consensus       242 l~~~e~~~l~~~~~~i~~~~v~lvl~~~~i~~~~~~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~l~~l~~~~lG~~  321 (507)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEEEcCeEEEEEEccCCCceeEEEecCCcHHHHHHHHHHHhHHHHHHHHHhhCCccccCCCchHHHHHHHHHHHhh
Q 010585          322 KLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELAR  401 (507)
Q Consensus       322 ~~v~~~~ig~~~~~~~~~~~~~~~~Till~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~la~~L~~~~~  401 (507)
                                                                                   ||||++|+.+|..|+++++
T Consensus       129 -------------------------------------------------------------~ggGa~e~~~a~~l~~~a~  147 (243)
T d1a6db1         129 -------------------------------------------------------------AGGGATAAEIAFRLRSYAQ  147 (243)
T ss_dssp             -------------------------------------------------------------ETTTHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------------------------cCCCchhHHHHHHHhhhhh
Confidence                                                                         0699999999999999999


Q ss_pred             cCCChhHHHHHHHHHHhhHhHHHHHHhcCCCHHHHHHHHHHHHHcCCCceeEEcCCCcccccccCCcccchHHHHHHHHH
Q 010585          402 KTPGKKSHAIEAFSRALVAIPTTIADNAGLDSAELIAQLRAEHQKEGCPAGIDVISGSVGDMAELGISESFKVKQAVLLS  481 (507)
Q Consensus       402 ~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~~l~~  481 (507)
                      ++++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..++.++|+|+.+|++.||.+.|||||+.+|+++|+.
T Consensus       148 ~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~  227 (243)
T d1a6db1         148 KIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIES  227 (243)
T ss_dssp             HTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHhhh
Q 010585          482 ATEAAEMILRVDEIIT  497 (507)
Q Consensus       482 A~e~a~~iL~iD~iI~  497 (507)
                      |+|+|++|||||++|.
T Consensus       228 A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         228 ATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999874
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure