Citrus Sinensis ID: 010590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
Protein Sequence
MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMDGDDDSSHQSQREAVNRHDPSIYHHHSQEF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccEEEEEccEEEEEEEEEEEcccHHHHHHHcccccccccccccccccccccccccccccccEEEccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcHHHHHHHHccccccEEEEEEcccEEcHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHccccHHHcccccccHHcHHHEEEcccccHHHcHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MTLEESLRSLSLDYLNLLIngqafsdvtfsvEGRLVHAHRCILAARSLFFRkffcgpdppsgldpatasrinqgppspasrptgvipvnsVGYEVFLLLLQFLYsgqvsivpqkheprpncgergcwhthcTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHlvaksglppevlakhlpiEVVAKIEDLRHKSSLARrslishhhhhhhhdlsaaaaADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGaadvnypagpagktplhiAAEMVSPDMVAVLLDhhadpnvrtvdgvtpldILRTLTsdflfkgavpglthiepnKLRLCLELVQSAALVLSReegilnepssstatviypppmsccseevhnnsssgsatinnnslnldssRLVYLNLgagtgnsahhhhhqmgssrmdgdddsshqsqreavnrhdpsiyhhhsqef
Flexible Loop (DISEMBL)
MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSReegilnepssstatviYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMDGDDDSSHQSQReavnrhdpsiYHHHSQEF
Low Complexity Region (SEG)
MTLEEslrslsldylnllINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSavdlaldtlaaaRYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKsslarrslishhhhhhhhdlsaaaaadlEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATInnnslnldssrlVYLNLGAGTGNSAHHHHHQmgssrmdgdddssHQSQREAVNRHDPSIYHHHSQEF
Disordered region (IsUnstruct)
*********LSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG***************************GVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIE*************************************************VELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI***********I**********************************LVYLNL**************************************************
Disordered Region (DISOPRED)
**********SLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG***********************SRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL************SSSTATVIYPPPMSCCS*********************DSSRLVYLNLGAGTGNSAHHHHHQMG*S***GD*DSS***********************
Disordered Region (DISEMBL)
********SLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI*********RPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSL*************AAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCS***********ATINNNSLNLDSSRLVYLNLGAGTG******************************NRHDPSI********
Disordered Region (DISPRO)
****ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGP*********************ASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPP***********************LNLDSSRLVYLNLGAGTGNSAHHHHH**GS**MDGDDDSSHQS*****NRHDP**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMDGDDDSSHQSQREAVNRHDPSIYHHHSQEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	506	2.2.26 [Sep-21-2011]
Q9ZVC2	491	Regulatory protein NPR5 O	yes	no	0.930	0.959	0.779	0.0
Q9M1I7	467	Regulatory protein NPR6 O	no	no	0.889	0.963	0.741	0.0
Q5ICL9	574	Regulatory protein NPR4 O	no	no	0.679	0.599	0.316	7e-41
Q8L746	586	Regulatory protein NPR3 O	no	no	0.697	0.602	0.320	8e-40
P93002	593	Regulatory protein NPR1 O	no	no	0.658	0.561	0.298	2e-32
Q9SZI3	600	Regulatory protein NPR2 O	no	no	0.630	0.531	0.293	6e-30
Q05823	741	2-5A-dependent ribonuclea	yes	no	0.156	0.106	0.425	2e-07
Q96Q07	612	BTB/POZ domain-containing	no	no	0.167	0.138	0.307	3e-07
Q5PQR3	612	BTB/POZ domain-containing	yes	no	0.298	0.246	0.246	3e-07
A4IFG2	611	BTB/POZ domain-containing	yes	no	0.167	0.139	0.307	3e-07

>sp|Q9ZVC2|NPR5_ARATH Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/507 (77%), Positives = 425/507 (83%), Gaps = 36/507 (7%)

Query: 3   LEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG---PDP 59
           LEESLRSLSLD+LNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG   P P
Sbjct: 4   LEESLRSLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGTDSPQP 63

Query: 60  PSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP 119
            +G+DP     +   P   ++ P G+IPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP
Sbjct: 64  VTGIDPTQHGSVPASPTRGSTAPAGIIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP 123

Query: 120 NCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIA 179
           NCGERGCWHTHC++AVDLALDTLAA+RYFGVEQLALLTQKQLA+MVEKASIEDVMKVLIA
Sbjct: 124 NCGERGCWHTHCSAAVDLALDTLAASRYFGVEQLALLTQKQLASMVEKASIEDVMKVLIA 183

Query: 180 SRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHH 239
           SRKQDMHQLWTTCSHLVAKSGLPPE+LAKHLPI+VV KIE+LR KSS+ARRSL+    H+
Sbjct: 184 SRKQDMHQLWTTCSHLVAKSGLPPEILAKHLPIDVVTKIEELRLKSSIARRSLMP---HN 240

Query: 240 HHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSRE 299
           HHHDLS   A DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDE+LALHYAVE+CSRE
Sbjct: 241 HHHDLS--VAQDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALHYAVESCSRE 298

Query: 300 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV G+TPLDI
Sbjct: 299 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVGGITPLDI 358

Query: 360 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG-ILNEPSSSTATVIYP 418
           LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA+V+SREEG   N  ++   T IYP
Sbjct: 359 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAMVISREEGNNSNNQNNDNNTGIYP 418

Query: 419 PPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMDG 478
                     H N    S +   ++ NLD SRLVYLNLGAGTG        QMG  R  G
Sbjct: 419 ----------HMNEEHNSGSSGGSNNNLD-SRLVYLNLGAGTG--------QMGPGRDQG 459

Query: 479 DDDSSHQSQREAVNRHDPSIYHHHSQE 505
           DD   H SQRE ++RH     HHH Q+
Sbjct: 460 DD---HNSQREGMSRH-----HHHHQD 478

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts redundantly with BOP2. BOP1/2 promote leaf and floral meristem fate and determinacy in a pathway targeting AP1 and AGL24. BOP1/2 act as transcriptional co-regulators through direct interaction with TGA factors, including PAN, a direct regulator of AP1. Controls lateral organ fate through positive regulation of adaxial-abaxial polarity genes ATHB-14/PHB, YAB1/FIL and YAB3, and through positive regulation of LOB domain-containing genes LOB, LBD6/AS2 and LBD36. Promotes and maintains a developmentally determinate state in leaf cells through the negative regulation of JAG, JGL and class I KNOX genes. Is also involved in nectary development, formation of normal abscission zones and suppression of bract formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I7|NPR6_ARATH Regulatory protein NPR6 OS=Arabidopsis thaliana GN=NPR6 PE=1 SV=1

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/502 (74%), Positives = 408/502 (81%), Gaps = 52/502 (10%)

Query: 2   TLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPS 61
           T EESL+S+SLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFC  DP  
Sbjct: 4   TFEESLKSMSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCESDPSQ 63

Query: 62  -GLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 120
            G +PA  +    G  + A+   GVIPVNSVGYEVFLLLLQFLYSGQVSIVP KHEPR N
Sbjct: 64  PGAEPANQT----GSGARAAAVGGVIPVNSVGYEVFLLLLQFLYSGQVSIVPHKHEPRSN 119

Query: 121 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIAS 180
           CG+RGCWHTHCT+AVDL+LD LAAARYFGVEQLALLTQK L +MVEKASIEDVMKVLIAS
Sbjct: 120 CGDRGCWHTHCTAAVDLSLDILAAARYFGVEQLALLTQKHLTSMVEKASIEDVMKVLIAS 179

Query: 181 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHH 240
           RKQDMHQLWTTCS+L+AKSGLP E+LAKHLPIE+VAKIE+LR KSS+  RSL+ HHH   
Sbjct: 180 RKQDMHQLWTTCSYLIAKSGLPQEILAKHLPIELVAKIEELRLKSSMPLRSLMPHHH--- 236

Query: 241 HHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV 300
             DL++    DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDE+LAL YAVENCSREV
Sbjct: 237 --DLTSTL--DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALIYAVENCSREV 292

Query: 301 VKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
           VKALLELGAADVNYPAGP GKT LHIAAEMVSPDMVAVLLDHHADPNV+TVDG+TPLDIL
Sbjct: 293 VKALLELGAADVNYPAGPTGKTALHIAAEMVSPDMVAVLLDHHADPNVQTVDGITPLDIL 352

Query: 361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPP 420
           RTLTSDFLFKGA+PGLTHIEPNKLRLCLELVQSAALV+SREEG  N  S+   T+IYP  
Sbjct: 353 RTLTSDFLFKGAIPGLTHIEPNKLRLCLELVQSAALVISREEG--NNNSNDNNTMIYP-- 408

Query: 421 MSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMDGDD 480
                  + +  +SGS+        LD SRLVYLNLGA              ++R  GDD
Sbjct: 409 ------RMKDEHTSGSS--------LD-SRLVYLNLGA--------------TNRDIGDD 439

Query: 481 DSSHQSQREAVNRHDPSIYHHH 502
           +S   +QRE +N H    +HHH
Sbjct: 440 NS---NQREGMNLH----HHHH 454

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts redundantly with BOP2. BOP1/2 promote leaf and floral meristem fate and determinacy in a pathway targeting AP1 and AGL24. BOP1/2 act as transcriptional co-regulators through direct interaction with TGA factors, including PAN, a direct regulator of AP1. Controls lateral organ fate through positive regulation of adaxial-abaxial polarity genes ATHB-14/PHB, YAB1/FIL and YAB3, and through positive regulation of LOB domain-containing genes LOB, LBD6/AS2 and LBD36. Promotes and maintains a developmentally determinate state in leaf cells through the negative regulation of JAG, JGL and class I KNOX genes. Is also involved in nectary development, formation of normal abscission zones and suppression of bract formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ICL9|NPR4_ARATH Regulatory protein NPR4 OS=Arabidopsis thaliana GN=NPR4 PE=1 SV=1

 Score =  169 bits (427), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 193/395 (48%), Gaps = 51/395 (12%)

Query: 6   SLRSLSLDYLNLLINGQA-FSD--VTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSG 62
           +L  LS +   LL N    ++D  +    E   V  HRC+LAARS FF   F        
Sbjct: 34  NLEELSSNLEQLLTNPDCDYTDAEIIIEEEANPVSVHRCVLAARSKFFLDLF-------- 85

Query: 63  LDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCG 122
                    +     P  +   ++P  +VG E FL  L ++Y+G++   P +      C 
Sbjct: 86  -----KKDKDSSEKKPKYQMKDLLPYGNVGREAFLHFLSYIYTGRLKPFPIEVS---TCV 137

Query: 123 ERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRK 182
           +  C H  C  A+D A++ + A+  F +  L    Q++L N VEK+ +E+V+ +L+ +  
Sbjct: 138 DSVCAHDSCKPAIDFAVELMYASFVFQIPDLVSSFQRKLRNYVEKSLVENVLPILLVAFH 197

Query: 183 QDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHH 242
            D+ QL   C   VA+S L    + K LP+EV+ KI+ LR KS                 
Sbjct: 198 CDLTQLLDQCIERVARSDLDRFCIEKELPLEVLEKIKQLRVKS----------------- 240

Query: 243 DLSAAAAADLEDQKIRR---MRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSRE 299
                   ++ED+ I R   + +ALDS DVELVKL++    + LD+A  LHYAV     +
Sbjct: 241 ----VNIPEVEDKSIERTGKVLKALDSDDVELVKLLLTESDITLDQANGLHYAVAYSDPK 296

Query: 300 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           VV  +L+L  ADVN+     G T LHIAA    P ++  L+   A+ +  T DG + ++I
Sbjct: 297 VVTQVLDLDMADVNF-RNSRGYTVLHIAAMRREPTIIIPLIQKGANASDFTFDGRSAVNI 355

Query: 360 LRTLT--SDFLFKGAVPGLTHIEPNKLRLCLELVQ 392
            R LT   D+  K +       EP+K RLC+++++
Sbjct: 356 CRRLTRPKDYHTKTS-----RKEPSKYRLCIDILE 385

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in the regulation of basal defense responses against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L746|NPR3_ARATH Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1

 Score =  165 bits (417), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 191/390 (48%), Gaps = 37/390 (9%)

Query: 6   SLRSLSLDYLNLLINGQA-FSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLD 64
           SL  LS +   LL N    +SD    V+G  V  HRCILAARS FF+  F          
Sbjct: 40  SLTKLSSNLEQLLSNSDCDYSDAEIIVDGVPVGVHRCILAARSKFFQDLF---------- 89

Query: 65  PATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGER 124
                +I++    P  +   ++P  +V +E FL  L ++Y+G++   P +      C + 
Sbjct: 90  -KKEKKISKTE-KPKYQLREMLPYGAVAHEAFLYFLSYIYTGRLKPFPLEVS---TCVDP 144

Query: 125 GCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQD 184
            C H  C  A+D  +  + A+    V +L    Q++L N VEK  +E+V+ +L+ +    
Sbjct: 145 VCSHDCCRPAIDFVVQLMYASSVLQVPELVSSFQRRLCNFVEKTLVENVLPILMVAFNCK 204

Query: 185 MHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDL 244
           + QL   C   VA+S L    + K +P EV  KI+ LR         LIS         +
Sbjct: 205 LTQLLDQCIERVARSDLYRFCIEKEVPPEVAEKIKQLR---------LISPQDEETSPKI 255

Query: 245 SAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKAL 304
           S         ++I ++ +ALDS DVELVKL++    + LD+A  LHY+V     +VV  +
Sbjct: 256 SEKLL-----ERIGKILKALDSDDVELVKLLLTESDITLDQANGLHYSVVYSDPKVVAEI 310

Query: 305 LELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLT 364
           L L   DVNY     G T LH AA    P ++  L+D  A+ +  T DG + ++ILR LT
Sbjct: 311 LALDMGDVNY-RNSRGYTVLHFAAMRREPSIIISLIDKGANASEFTSDGRSAVNILRRLT 369

Query: 365 S--DFLFKGAVPGLTHIEPNKLRLCLELVQ 392
           +  D+  K A       E +K RLC+++++
Sbjct: 370 NPKDYHTKTA----KGRESSKARLCIDILE 395

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in the regulation of basal defense responses against pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|P93002|NPR1_ARATH Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 173/372 (46%), Gaps = 39/372 (10%)

Query: 24  FSDVTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRP 82
           +SD    + +GR V  HRC+L+ARS FF+         S L  A   + +    +     
Sbjct: 64  YSDAKLVLSDGREVSFHRCVLSARSSFFK---------SALAAAKKEKDSNNTAAVKLEL 114

Query: 83  TGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTL 142
             +     VG++  + +L ++YS +V   P+       C +  C H  C  AVD  L+ L
Sbjct: 115 KEIAKDYEVGFDSVVTVLAYVYSSRVRPPPKGV---SECADENCCHVACRPAVDFMLEVL 171

Query: 143 AAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASR--KQDMHQLWTTCSHLVAKSG 200
             A  F + +L  L Q+ L ++V+K  IED + +L  +    +   +L   C  ++ KS 
Sbjct: 172 YLAFIFKIPELITLYQRHLLDVVDKVVIEDTLVILKLANICGKACMKLLDRCKEIIVKSN 231

Query: 201 LPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRM 260
           +    L K LP E+V +I D R +  L    +  H  + H                    
Sbjct: 232 VDMVSLEKSLPEELVKEIIDRRKELGLEVPKVKKHVSNVH-------------------- 271

Query: 261 RRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAG 320
            +ALDS D+ELVKL++  +  NLD+A ALH+AV  C+ +    LL+L  ADVN+   P G
Sbjct: 272 -KALDSDDIELVKLLLKEDHTNLDDACALHFAVAYCNVKTATDLLKLDLADVNH-RNPRG 329

Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIE 380
            T LH+AA    P ++  LL+  A  +  T++G T L I +  T             H  
Sbjct: 330 YTVLHVAAMRKEPQLILSLLEKGASASEATLEGRTALMIAKQATMAVECNNIPEQCKH-- 387

Query: 381 PNKLRLCLELVQ 392
             K RLC+E+++
Sbjct: 388 SLKGRLCVEILE 399

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Key positive regulator of the SA-dependent signaling pathway that negatively regulates JA-dependent signaling pathway. Mediates the binding of TGA factors to the as-1 motif found in the pathogenesis-related PR-1 gene, leading to the transcriptional regulation of the gene defense. Controls the onset of systemic acquired resistance (SAR). Upon SAR induction, a biphasic change in cellular reduction potential occurs, resulting in reduction of the cytoplasmic oligomeric form to a monomeric form that accumulates in the nucleus and activates gene expression. Phosphorylated form is target of proteasome degradation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZI3|NPR2_ARATH Regulatory protein NPR2 OS=Arabidopsis thaliana GN=NPR2 PE=3 SV=1

 Score =  132 bits (332), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 169/364 (46%), Gaps = 45/364 (12%)

Query: 33  GRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVN-SV 91
           GR V  HRCIL+AR   F+              A A+   Q   +        I  +  V
Sbjct: 76  GREVSFHRCILSARIPVFK-------------SALATVKEQKSSTTVKLQLKEIARDYEV 122

Query: 92  GYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVE 151
           G++  + +L ++YSG+V   P+       C +  C H  C S VD  ++ L  +  F ++
Sbjct: 123 GFDSVVAVLAYVYSGRVRSPPKGASA---CVDDDCCHVACRSKVDFMVEVLYLSFVFQIQ 179

Query: 152 QLALLTQKQLANMVEKASIEDVMKVLIASR--KQDMHQLWTTCSHLVAKSGLPPEVLAKH 209
           +L  L ++Q   +V+K  +ED++ +            +L   C  ++ KS +    L K 
Sbjct: 180 ELVTLYERQFLEIVDKVVVEDILVIFKLDTLCGTTYKKLLDRCIEIIVKSDIELVSLEKS 239

Query: 210 LPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDV 269
           LP  +  +I D+R    L    L  H                     ++ + +ALDS DV
Sbjct: 240 LPQHIFKQIIDIREALCLEPPKLERH---------------------VKNIYKALDSDDV 278

Query: 270 ELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE 329
           ELVK++++    NLDEA ALH+A+ +C+ +    LLEL  ADVN    P G T LH+AA 
Sbjct: 279 ELVKMLLLEGHTNLDEAYALHFAIAHCAVKTAYDLLELELADVNL-RNPRGYTVLHVAAM 337

Query: 330 MVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPN-KLRLCL 388
              P ++  LL   A+    T+DG T L I++ LT    +K +    T   P+ K  LC+
Sbjct: 338 RKEPKLIISLLMKGANILDTTLDGRTALVIVKRLTKADDYKTSTEDGT---PSLKGGLCI 394

Query: 389 ELVQ 392
           E+++
Sbjct: 395 EVLE 398

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05823|RN5A_HUMAN 2-5A-dependent ribonuclease OS=Homo sapiens GN=RNASEL PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 8/87 (9%)

Query: 292 AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV 351
           AV+N   ++V+ LLE G A+VN+     G TPLH A +M   D+V +LL H ADP +R  
Sbjct: 32  AVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 90

Query: 352 DGVTPLDILRTLTSD------FLFKGA 372
           +G TP  IL  +         FL KGA
Sbjct: 91  NGATPF-ILAAIAGSVKLLKLFLSKGA 116

Endoribonuclease that functions in the interferon (IFN) antiviral response. In INF treated and virus infected cells, RNASEL probably mediates its antiviral effects through a combination of direct cleavage of single-stranded viral RNAs, inhibition of protein synthesis through the degradation of rRNA, induction of apoptosis, and induction of other antiviral genes. RNASEL mediated apoptosis is the result of a JNK-dependent stress-response pathway leading to cytochrome c release from mitochondria and caspase-dependent apoptosis. Therefore, activation of RNASEL could lead to elimination of virus infected cells under some circumstances. Might play a central role in the regulation of mRNA. turnover.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q96Q07|BTBD9_HUMAN BTB/POZ domain-containing protein 9 OS=Homo sapiens GN=BTBD9 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 19/104 (18%)

Query: 13  DYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRIN 72
           +++  L+ G+ + DVTF VE +   AHR ILAAR  +FR    G     G+         
Sbjct: 24  EHIGALLIGEEYGDVTFVVEKKRFPAHRVILAARCQYFRALLYG-----GM--------- 69

Query: 73  QGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHE 116
                  S+P   IP+     E F +LL+++Y+G+ ++  +K E
Sbjct: 70  -----RESQPEAEIPLQDTTAEAFTMLLKYIYTGRATLTDEKEE 108

Homo sapiens (taxid: 9606)

>sp|Q5PQR3|BTBD9_RAT BTB/POZ domain-containing protein 9 OS=Rattus norvegicus GN=Btbd9 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 44/195 (22%)

Query: 13  DYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRIN 72
           +++  L+ G+ + DVTF VE +   AHR ILAAR  +FR    G     G+         
Sbjct: 24  EHIGALLIGEEYGDVTFVVEKKRFPAHRVILAARCQYFRALLYG-----GMR-------- 70

Query: 73  QGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCT 132
                  S+P   IP+     E F +LL+++Y+G+ ++  +K E                
Sbjct: 71  ------ESQPEAEIPLQDTTAEAFTMLLRYIYTGRATLTDEKEE---------------- 108

Query: 133 SAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTC 192
               + LD L+ A  +G  +L   T + L  ++   +I++V      +    + +L   C
Sbjct: 109 ----VLLDFLSLAHKYGFPELEDSTSEYLCTIL---NIQNVCMTFDVASLYSLPKLTCMC 161

Query: 193 SHLVAKSGLPPEVLA 207
              + ++    EVLA
Sbjct: 162 CMFMDRNA--QEVLA 174

Rattus norvegicus (taxid: 10116)

>sp|A4IFG2|BTBD9_BOVIN BTB/POZ domain-containing protein 9 OS=Bos taurus GN=BTBD9 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 19/104 (18%)

Query: 13  DYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRIN 72
           +++  L+ G+ + DVTF VE +   AHR ILAAR  +FR    G     G+         
Sbjct: 24  EHIGALLIGEEYGDVTFVVEKKRFPAHRVILAARCQYFRALLYG-----GM--------- 69

Query: 73  QGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHE 116
                  S+P   IP+     E F +LL+++Y+G+ ++  +K E
Sbjct: 70  -----RESQPEAEIPLEDTTAEAFTMLLKYIYTGRATLTDEKEE 108

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
225441317	490	PREDICTED: regulatory protein NPR5 [Viti	0.946	0.977	0.818	0.0
224090009	481	BOP/NPR1/NIM1-like regulatory protein [P	0.944	0.993	0.840	0.0
147852378	490	hypothetical protein VITISV_010389 [Viti	0.946	0.977	0.816	0.0
255581389	491	aberrant large forked product, putative	0.954	0.983	0.848	0.0
356650812	483	BTB/POZ ankyrin repeat protein [Pisum sa	0.932	0.977	0.791	0.0
297827775	491	hypothetical protein ARALYDRAFT_903451 [	0.944	0.973	0.775	0.0
356650816	483	BTB/POZ ankyrin repeat protein [Pisum sa	0.932	0.977	0.789	0.0
356650804	483	BTB/POZ ankyrin repeat protein [Medicago	0.928	0.973	0.796	0.0
15227330	491	ankyrin repeat and BTB/POZ domain-contai	0.930	0.959	0.779	0.0
356498615	476	PREDICTED: regulatory protein NPR5-like	0.916	0.974	0.764	0.0

>gi|225441317|ref|XP_002275980.1| PREDICTED: regulatory protein NPR5 [Vitis vinifera]

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/517 (81%), Positives = 447/517 (86%), Gaps = 38/517 (7%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           MTLE+SLRSLSLDYLNLLINGQAFSDVTF+VEGRLVHAHRCILAARSLFFRKFFCGPDPP
Sbjct: 1   MTLEDSLRSLSLDYLNLLINGQAFSDVTFNVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60

Query: 61  SGLDPATASRINQGPPSPASRPTG----VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHE 116
           +GLDP   SR+     + A+ P G    VIPVNSVGYEVFLL+LQFLYSGQVSIVPQKHE
Sbjct: 61  AGLDPG-GSRMGSAAAALATSPRGGNSHVIPVNSVGYEVFLLVLQFLYSGQVSIVPQKHE 119

Query: 117 PRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKV 176
           PRPNCGERGCWHTHCTSAVDLALDTLAAAR FGVEQLALLTQKQLA+MVEKASIEDVMKV
Sbjct: 120 PRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKV 179

Query: 177 LIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHH 236
           LIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPI+VVAKIE+LR KSSLARRSL+ HH
Sbjct: 180 LIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPHH 239

Query: 237 HHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENC 296
           HHH        AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENC
Sbjct: 240 HHHQ----DIGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENC 295

Query: 297 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP 356
           SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP
Sbjct: 296 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP 355

Query: 357 LDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVI 416
           LD+LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG  N PSS+T   I
Sbjct: 356 LDVLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGSANAPSSTT---I 412

Query: 417 YPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGA-GTGNSAHHHHHQMGSSR 475
           YPP        + ++  S S++ N  SLNLD SRLVYLNLGA G+G        QMG SR
Sbjct: 413 YPP--------MSDDHHSSSSSSNMASLNLD-SRLVYLNLGATGSG--------QMG-SR 454

Query: 476 MDGDDDSSHQSQREAVNRH------DPSIYHHHSQEF 506
           MD +DD SH +QREA+NRH      D S+Y HHS E+
Sbjct: 455 MDREDDVSHNNQREAMNRHGSQGGCDTSMY-HHSHEY 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090009|ref|XP_002308905.1| BOP/NPR1/NIM1-like regulatory protein [Populus trichocarpa] gi|222854881|gb|EEE92428.1| BOP/NPR1/NIM1-like regulatory protein [Populus trichocarpa]

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/509 (84%), Positives = 457/509 (89%), Gaps = 31/509 (6%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           MTLE+SLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP
Sbjct: 1   MTLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60

Query: 61  SGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 120
           SGLDP + SRIN    SP SR + VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN
Sbjct: 61  SGLDP-SGSRINT-VGSPGSR-SNVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 117

Query: 121 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIAS 180
           CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLA+LTQKQLANMVEKASIEDVMKVLIAS
Sbjct: 118 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLAMLTQKQLANMVEKASIEDVMKVLIAS 177

Query: 181 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHH 240
           RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPI+VVAKIE+LR KSS+ARRSL+  HHHHH
Sbjct: 178 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSIARRSLMP-HHHHH 236

Query: 241 HHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV 300
            HDL+  +AADLEDQKIRRM+RALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV
Sbjct: 237 LHDLT--SAADLEDQKIRRMKRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV 294

Query: 301 VKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
           VKALLELGAA+VNY AGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL
Sbjct: 295 VKALLELGAANVNYQAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 354

Query: 361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPP 420
           RTLTSDFLFKGAVPGL H+EPNKLRLCLELVQSAA+VLSREEG +N    +T+T+IYP  
Sbjct: 355 RTLTSDFLFKGAVPGLAHMEPNKLRLCLELVQSAAMVLSREEGNVN----ATSTLIYP-- 408

Query: 421 MSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLG-AGTGNSAHHHHHQMGSSRMDGD 479
               S+E HN SSSGS   N   LNLD SRLVYLNLG AG+G        QMG SRMD +
Sbjct: 409 --SMSDE-HNTSSSGSNLAN---LNLD-SRLVYLNLGAAGSG--------QMG-SRMDEE 452

Query: 480 DDSSHQSQRE--AVNRHDPSIYHHHSQEF 506
           DDS+H +QR+  A++RHDP++YHHHS +F
Sbjct: 453 DDSNHNNQRDHHAMSRHDPTMYHHHSHDF 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852378|emb|CAN80112.1| hypothetical protein VITISV_010389 [Vitis vinifera]

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/517 (81%), Positives = 446/517 (86%), Gaps = 38/517 (7%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           MTLE+SLRSLSLDYLNLLINGQAFSDVTF+VEGRLVHAHRCILAARSLFFRKFFCGPDPP
Sbjct: 1   MTLEDSLRSLSLDYLNLLINGQAFSDVTFNVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60

Query: 61  SGLDPATASRINQGPPSPASRPTG----VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHE 116
           +GLDP    R+     + A+ P G    VIPVNSVGYEVFLL+LQFLYSGQVSIVPQKHE
Sbjct: 61  AGLDPG-GXRMGSAAAALATSPRGGNSHVIPVNSVGYEVFLLVLQFLYSGQVSIVPQKHE 119

Query: 117 PRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKV 176
           PRPNCGERGCWHTHCTSAVDLALDTLAAAR FGVEQLALLTQKQLA+MVEKASIEDVMKV
Sbjct: 120 PRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKV 179

Query: 177 LIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHH 236
           LIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPI+VVAKIE+LR KSSLARRSL+ HH
Sbjct: 180 LIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPHH 239

Query: 237 HHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENC 296
           HHH        AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENC
Sbjct: 240 HHHQ----DIGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENC 295

Query: 297 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP 356
           SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP
Sbjct: 296 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP 355

Query: 357 LDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVI 416
           LD+LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG  N PSS+T   I
Sbjct: 356 LDVLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGSANAPSSTT---I 412

Query: 417 YPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGA-GTGNSAHHHHHQMGSSR 475
           YPP        + ++  S S++ N  SLNLD SRLVYLNLGA G+G        QMG SR
Sbjct: 413 YPP--------MSDDHHSSSSSSNMASLNLD-SRLVYLNLGATGSG--------QMG-SR 454

Query: 476 MDGDDDSSHQSQREAVNRH------DPSIYHHHSQEF 506
           MD +DD SH +QREA+NRH      D S+Y HHS E+
Sbjct: 455 MDREDDVSHNNQREAMNRHGSQGGCDTSMY-HHSHEY 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581389|ref|XP_002531503.1| aberrant large forked product, putative [Ricinus communis] gi|223528890|gb|EEF30890.1| aberrant large forked product, putative [Ricinus communis]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/514 (84%), Positives = 457/514 (88%), Gaps = 31/514 (6%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           MTLE+SLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGP+PP
Sbjct: 1   MTLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPEPP 60

Query: 61  SGLDPATASRINQ------GPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQK 114
           SGLDP + SRIN       G     SR   VIPVNSVGYEVFLLLLQFLYSGQVSIVPQK
Sbjct: 61  SGLDP-SGSRINHPGGGGGGSGGGVSRGNNVIPVNSVGYEVFLLLLQFLYSGQVSIVPQK 119

Query: 115 HEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVM 174
           HEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA+MVEKASIEDVM
Sbjct: 120 HEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVM 179

Query: 175 KVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLIS 234
           KVLIASRKQDMHQLWTTCSHL AKSGLPPEVLAKHLPI+VVAKIE+LR KSSLARRSL+ 
Sbjct: 180 KVLIASRKQDMHQLWTTCSHLAAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMP 239

Query: 235 HHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVE 294
           HHHHHH  DL+ AA  DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVE
Sbjct: 240 HHHHHH--DLTTAA--DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVE 295

Query: 295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGV 354
           NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGV
Sbjct: 296 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGV 355

Query: 355 TPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTAT 414
           TPLDILRTLTSDFLFKGAVPGL HIEPNKLRLCLELVQSAALVLSREEG +N P   T+T
Sbjct: 356 TPLDILRTLTSDFLFKGAVPGLAHIEPNKLRLCLELVQSAALVLSREEGSVNAP---TST 412

Query: 415 VIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS 474
            IYPP     S+E HN+SSSG + + N  LNLD SRLVYLNLGA TG S      QMGSS
Sbjct: 413 AIYPP----MSDE-HNSSSSGGSNLAN--LNLD-SRLVYLNLGA-TGCSG-----QMGSS 458

Query: 475 RMDGDDD-SSHQS-QREAVNRHDPSIYHHHSQEF 506
           RM+GDDD SSH S QR++++RHDP++Y HHS EF
Sbjct: 459 RMEGDDDHSSHSSQQRDSMSRHDPTMY-HHSHEF 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356650812|gb|AET34790.1| BTB/POZ ankyrin repeat protein [Pisum sativum] gi|356650814|gb|AET34791.1| BTB/POZ ankyrin repeat protein [Pisum sativum]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/508 (79%), Positives = 438/508 (86%), Gaps = 36/508 (7%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           M+LE+SLRSLSLDYLNLLINGQAFSDV FSVEGRLVHAHRCILAARSLFFRKFFCGPDPP
Sbjct: 1   MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60

Query: 61  SGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 120
           SGLDP + +R+N      +S  +GVIPVNSVGYEVFLL+LQFLYSGQVSIVPQKHEPRPN
Sbjct: 61  SGLDP-SGNRVN------SSTRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPN 113

Query: 121 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIAS 180
           CG+RGCWHTHCTSAVDLALDTL+AARYFGVEQLALLTQKQLA+MVEKASIEDVMKVL+AS
Sbjct: 114 CGDRGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLAS 173

Query: 181 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHH 240
           RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPI+++AKIE+LR KSSL+RRSLI HHHH+ 
Sbjct: 174 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRMKSSLSRRSLIPHHHHNP 233

Query: 241 HHDLSA-AAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSRE 299
           HH      AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALAL YAVE+CSRE
Sbjct: 234 HHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVESCSRE 293

Query: 300 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           VVKALLELGAADVN+PAGP GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI
Sbjct: 294 VVKALLELGAADVNFPAGPTGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 353

Query: 360 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG-----ILNEPSSSTAT 414
           LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALV+SREEG       N  + S+AT
Sbjct: 354 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNNNANNNNTGSSAT 413

Query: 415 VIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS 474
            +YP          HN+ +    + +NN+ N+D SRLVYLNLGA T         QM +S
Sbjct: 414 NMYP----------HNHMNEEHHSHHNNNSNMD-SRLVYLNLGANT---------QMSTS 453

Query: 475 RMDGDDDSSHQSQREAVNRHDPSIYHHH 502
           R+D  DD  + +QREA+N   PS+YHHH
Sbjct: 454 RLDSGDDDHNSNQREAMN---PSMYHHH 478

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827775|ref|XP_002881770.1| hypothetical protein ARALYDRAFT_903451 [Arabidopsis lyrata subsp. lyrata] gi|297327609|gb|EFH58029.1| hypothetical protein ARALYDRAFT_903451 [Arabidopsis lyrata subsp. lyrata]

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/516 (77%), Positives = 430/516 (83%), Gaps = 38/516 (7%)

Query: 2   TLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG---PD 58
           +LEESLRSLSLD+LNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG   P 
Sbjct: 3   SLEESLRSLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGTDSPQ 62

Query: 59  PPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPR 118
           P +G+DP     +   P   ++ P GVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPR
Sbjct: 63  PVTGIDPTRHGSVPASPTRGSTAPAGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPR 122

Query: 119 PNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLI 178
           PNCGERGCWHTHC++AVDLALDTLAA+RYFGVEQLALLTQKQLA+MVEKASIEDVMKVLI
Sbjct: 123 PNCGERGCWHTHCSAAVDLALDTLAASRYFGVEQLALLTQKQLASMVEKASIEDVMKVLI 182

Query: 179 ASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHH 238
           ASRKQDMHQLWTTCSHLVAKSGLPPE+LAKHLPI+VVAKIE+LR KSS+ARRSL+    H
Sbjct: 183 ASRKQDMHQLWTTCSHLVAKSGLPPEILAKHLPIDVVAKIEELRLKSSIARRSLMP---H 239

Query: 239 HHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSR 298
           +HHHDLS   A DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDE+LALHYAVE+CSR
Sbjct: 240 NHHHDLS--VAQDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALHYAVESCSR 297

Query: 299 EVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLD 358
           EVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV G+TPLD
Sbjct: 298 EVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVGGITPLD 357

Query: 359 ILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG-ILNEPSSSTATVIY 417
           ILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA+V+SREEG   N  ++   T IY
Sbjct: 358 ILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAMVISREEGNNSNNQNNDNNTGIY 417

Query: 418 PPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMD 477
           P          H N    S +   ++ NLD SRLVYLNLGAGTG        QMG  R  
Sbjct: 418 P----------HMNEEHNSGSSGGSNNNLD-SRLVYLNLGAGTG--------QMGPGRDQ 458

Query: 478 GDDDSSHQSQREAVNR------HDPS-IYHHHSQEF 506
           GDD   H SQRE ++R       DPS +YHHH   F
Sbjct: 459 GDD---HISQREGMSRHHHHHHQDPSTMYHHHQHHF 491

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356650816|gb|AET34792.1| BTB/POZ ankyrin repeat protein [Pisum sativum]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/508 (78%), Positives = 437/508 (86%), Gaps = 36/508 (7%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           M+LE+SLRSLSLDYLNLLINGQAFSDV FSVEGRLVHAHRCILAARSLFFRKFFCGPDPP
Sbjct: 1   MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60

Query: 61  SGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 120
           SGLDP + +R+N      +S  +GVIPVNSVGYEVFLL+LQFLYSGQVSIVPQKHEPRPN
Sbjct: 61  SGLDP-SGNRVN------SSTRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPN 113

Query: 121 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIAS 180
           CG+RGCWHTHCTSAVDLALDTL+AARYFGVEQLALLTQKQLA+MVEKASIEDVMKVL+AS
Sbjct: 114 CGDRGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLAS 173

Query: 181 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHH 240
           RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPI+++AKIE+LR KSSL+RRSLI HHHH+ 
Sbjct: 174 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRMKSSLSRRSLIPHHHHNP 233

Query: 241 HHDLSA-AAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSRE 299
           HH      AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALAL YAVE+CSRE
Sbjct: 234 HHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVESCSRE 293

Query: 300 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           VVKALLELGAADVN+PAGP GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI
Sbjct: 294 VVKALLELGAADVNFPAGPTGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 353

Query: 360 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG-----ILNEPSSSTAT 414
           LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ AALV+SREEG       N  + S+AT
Sbjct: 354 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQFAALVMSREEGNNNNNANNNNTGSSAT 413

Query: 415 VIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS 474
            +YP          HN+ +    + +NN+ N+D SRLVYLNLGA T         QM +S
Sbjct: 414 NMYP----------HNHMNEEHHSHHNNNSNMD-SRLVYLNLGANT---------QMSTS 453

Query: 475 RMDGDDDSSHQSQREAVNRHDPSIYHHH 502
           R+D  DD  + +QREA+N   PS+YHHH
Sbjct: 454 RLDSGDDDHNSNQREAMN---PSMYHHH 478

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356650804|gb|AET34786.1| BTB/POZ ankyrin repeat protein [Medicago truncatula] gi|356650808|gb|AET34788.1| BTB/POZ ankyrin repeat protein [Medicago truncatula]

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/511 (79%), Positives = 442/511 (86%), Gaps = 41/511 (8%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           M+LE+SLRSLSLDYLNLLINGQAFSDV FSVEGRLVHAHRCILAARSLFFRKFFCGPDPP
Sbjct: 1   MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60

Query: 61  SGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 120
           SGLDP + +R+N   PS ++R +GVIPVNSVGYEVFLL+LQFLYSGQVSIVPQKHEPRPN
Sbjct: 61  SGLDP-SGNRVN---PSGSAR-SGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPN 115

Query: 121 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIAS 180
           CG+RGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA+MVEKASIEDVMKVL+AS
Sbjct: 116 CGDRGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLAS 175

Query: 181 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHH 240
           RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPI+++AKIE+LR K+SL+RRSL+ HHHH H
Sbjct: 176 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRIKTSLSRRSLMPHHHHPH 235

Query: 241 HHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV 300
           HH     AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALAL YAVENCSREV
Sbjct: 236 HH-DHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREV 294

Query: 301 VKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
           VKALLELGAADVN+PAGP GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL
Sbjct: 295 VKALLELGAADVNFPAGPTGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 354

Query: 361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG-------ILNEPSSSTA 413
           RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALV+SREEG         N  ++S+A
Sbjct: 355 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNNSNNNNNNATASSA 414

Query: 414 TVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS 473
           T +YP          HN +     + NNN+++   SRLVYLNLGA T         QM +
Sbjct: 415 TNMYPH---------HNMNEDHRHSHNNNNMD---SRLVYLNLGANT---------QMST 453

Query: 474 SRMD-GDDDSSHQSQREAVNRHDPSIYHHHS 503
           SRMD GDDD++H   REA+N    S+YHHHS
Sbjct: 454 SRMDSGDDDNTH---REAINN---SMYHHHS 478

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227330|ref|NP_181668.1| ankyrin repeat and BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75315939|sp|Q9ZVC2.1|NPR5_ARATH RecName: Full=Regulatory protein NPR5; AltName: Full=BTB/POZ domain-containing protein NPR5; AltName: Full=Protein BLADE ON PETIOLE 2 gi|3894187|gb|AAC78536.1| hypothetical protein [Arabidopsis thaliana] gi|53749156|gb|AAU90063.1| At2g41370 [Arabidopsis thaliana] gi|60545031|gb|AAX22759.1| BLADE-ON-PETIOLE2 [Arabidopsis thaliana] gi|330254872|gb|AEC09966.1| ankyrin repeat and BTB/POZ domain-containing protein [Arabidopsis thaliana]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/507 (77%), Positives = 425/507 (83%), Gaps = 36/507 (7%)

Query: 3   LEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG---PDP 59
           LEESLRSLSLD+LNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG   P P
Sbjct: 4   LEESLRSLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGTDSPQP 63

Query: 60  PSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP 119
            +G+DP     +   P   ++ P G+IPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP
Sbjct: 64  VTGIDPTQHGSVPASPTRGSTAPAGIIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP 123

Query: 120 NCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIA 179
           NCGERGCWHTHC++AVDLALDTLAA+RYFGVEQLALLTQKQLA+MVEKASIEDVMKVLIA
Sbjct: 124 NCGERGCWHTHCSAAVDLALDTLAASRYFGVEQLALLTQKQLASMVEKASIEDVMKVLIA 183

Query: 180 SRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHH 239
           SRKQDMHQLWTTCSHLVAKSGLPPE+LAKHLPI+VV KIE+LR KSS+ARRSL+    H+
Sbjct: 184 SRKQDMHQLWTTCSHLVAKSGLPPEILAKHLPIDVVTKIEELRLKSSIARRSLMP---HN 240

Query: 240 HHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSRE 299
           HHHDLS   A DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDE+LALHYAVE+CSRE
Sbjct: 241 HHHDLS--VAQDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALHYAVESCSRE 298

Query: 300 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV G+TPLDI
Sbjct: 299 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVGGITPLDI 358

Query: 360 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG-ILNEPSSSTATVIYP 418
           LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA+V+SREEG   N  ++   T IYP
Sbjct: 359 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAMVISREEGNNSNNQNNDNNTGIYP 418

Query: 419 PPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMDG 478
                     H N    S +   ++ NLD SRLVYLNLGAGTG        QMG  R  G
Sbjct: 419 ----------HMNEEHNSGSSGGSNNNLD-SRLVYLNLGAGTG--------QMGPGRDQG 459

Query: 479 DDDSSHQSQREAVNRHDPSIYHHHSQE 505
           DD   H SQRE ++RH     HHH Q+
Sbjct: 460 DD---HNSQREGMSRH-----HHHHQD 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498615|ref|XP_003518145.1| PREDICTED: regulatory protein NPR5-like [Glycine max]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/518 (76%), Positives = 426/518 (82%), Gaps = 54/518 (10%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           M+ EES RSLS+DYLNLLINGQAFSDVTF VEGRLVH HRCILAARSLFFRKFFCGPDPP
Sbjct: 1   MSQEESQRSLSMDYLNLLINGQAFSDVTFQVEGRLVHGHRCILAARSLFFRKFFCGPDPP 60

Query: 61  SGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 120
           +GLDPA ASR N      A+RP GVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHE RPN
Sbjct: 61  TGLDPAGASRSND--TGAAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPN 118

Query: 121 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIAS 180
           CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA+MVEKASI+DVMKVLIAS
Sbjct: 119 CGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIAS 178

Query: 181 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHH 240
           RKQ+M QLW+TCSHLVAKSGLPPEVLAKHLPI+VVAKIE+LR KSSLARRSL+   HH H
Sbjct: 179 RKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLLP-GHHQH 237

Query: 241 HHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV 300
           HHDL+      +EDQKI+RMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV
Sbjct: 238 HHDLTPG----MEDQKIQRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV 293

Query: 301 VKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
           VKALLELGAADVN+PAGPAGKTPLH+AAEMV P+MVAVLLDHHADPNVRTV+GVTPLDIL
Sbjct: 294 VKALLELGAADVNFPAGPAGKTPLHVAAEMVLPEMVAVLLDHHADPNVRTVEGVTPLDIL 353

Query: 361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG-----ILNEPSSSTATV 415
           RTLTSDFLF+GAVPGLTHIEPNKLRLCLELVQSAALVLSREEG       N  +S++AT 
Sbjct: 354 RTLTSDFLFRGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNVNNDHNNNASASATA 413

Query: 416 IYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSR 475
           IYPP     S E H++ +S              SRLVYLNLGA               + 
Sbjct: 414 IYPP----MSSEDHSSGNS-------------DSRLVYLNLGA---------------TP 441

Query: 476 MDGDDDSSHQSQREAVNRH-------DPSIYHHHSQEF 506
             G+DD    SQREA+NRH       DP   +HHS +F
Sbjct: 442 PMGEDDG---SQREAMNRHGSQGGRCDPPSMYHHSHDF 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	506
TAIR|locus:2040292	491	BOP2 "BLADE ON PETIOLE2" [Arab	0.948	0.977	0.678	1.6e-173
TAIR|locus:2080595	467	BOP1 "BLADE ON PETIOLE 1" [Ara	0.889	0.963	0.684	8.5e-162
TAIR|locus:2133925	574	NPR4 "NPR1-like protein 4" [Ar	0.268	0.236	0.384	5.6e-31
TAIR|locus:2153192	586	NPR3 "AT5G45110" [Arabidopsis	0.616	0.532	0.301	2e-29
TAIR|locus:2014200	593	NPR1 "AT1G64280" [Arabidopsis	0.262	0.224	0.367	1.2e-25
TAIR|locus:2120800	600	AT4G26120 "AT4G26120" [Arabido	0.266	0.225	0.385	7.5e-23
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.227	0.495	0.325	3.9e-06
RGD|621887	359	Nfkbib "nuclear factor of kapp	0.154	0.217	0.417	7.8e-06
MGI|MGI:104752	359	Nfkbib "nuclear factor of kapp	0.154	0.217	0.405	1e-05
UNIPROTKB|Q96DX5	294	ASB9 "Ankyrin repeat and SOCS	0.237	0.408	0.310	1.1e-05

TAIR|locus:2040292 BOP2 "BLADE ON PETIOLE2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1639 (582.0 bits), Expect = 1.6e-173, Sum P(2) = 1.6e-173
 Identities = 344/507 (67%), Positives = 368/507 (72%)

Query:     3 LEEXXXXXXXXXXXXXINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG---PDP 59
             LEE             INGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCG   P P
Sbjct:     4 LEESLRSLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGTDSPQP 63

Query:    60 PSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP 119
              +G+DP     +   P   ++ P G+IPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP
Sbjct:    64 VTGIDPTQHGSVPASPTRGSTAPAGIIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRP 123

Query:   120 NCGERGCWHTHCTSXXXXXXXXXXXXRYFGVEQLALLTQKQLANMVEKASIEDVMKVLIA 179
             NCGERGCWHTHC++            RYFGVEQLALLTQKQLA+MVEKASIEDVMKVLIA
Sbjct:   124 NCGERGCWHTHCSAAVDLALDTLAASRYFGVEQLALLTQKQLASMVEKASIEDVMKVLIA 183

Query:   180 SRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKXXXXXXXXXXXXXXX 239
             SRKQDMHQLWTTCSHLVAKSGLPPE+LAKHLPI+VV KIE+LR K               
Sbjct:   184 SRKQDMHQLWTTCSHLVAKSGLPPEILAKHLPIDVVTKIEELRLKSSIARRSLMPHNHHH 243

Query:   240 XXXXXXXXXXXXXEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSRE 299
                          EDQKIRRMRRALDSSDVELVKLMVMGEGLNLDE+LALHYAVE+CSRE
Sbjct:   244 DLSVAQDL-----EDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALHYAVESCSRE 298

Query:   300 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
             VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV G+TPLDI
Sbjct:   299 VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVGGITPLDI 358

Query:   360 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI-LNEPSSSTATVIYP 418
             LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA+V+SREEG   N  ++   T IYP
Sbjct:   359 LRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAMVISREEGNNSNNQNNDNNTGIYP 418

Query:   419 PPMSCCSEEVHNNSSSGSATIXXXXXXXXXXXXVYLNLGAGTGNSAHHHHHQXXXXXXXX 478
                   +EE HN+ SSG +              VYLNLGAGTG                 
Sbjct:   419 H----MNEE-HNSGSSGGSN------NNLDSRLVYLNLGAGTGQMGPGRDQGDDHNSQRE 467

Query:   479 XXXXXHQSQREAVNRHDPS-IYHHHSQ 504
                  H       +  DPS +YHHH Q
Sbjct:   468 GMSRHHH------HHQDPSTMYHHHHQ 488

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010227 "floral organ abscission" evidence=IGI;RCA

GO:0010434 "bract formation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009954 "proximal/distal pattern formation" evidence=IGI;RCA

GO:0048439 "flower morphogenesis" evidence=IGI;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0010254 "nectary development" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IGI

TAIR|locus:2080595 BOP1 "BLADE ON PETIOLE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1535 (545.4 bits), Expect = 8.5e-162, Sum P(2) = 8.5e-162
 Identities = 321/469 (68%), Positives = 346/469 (73%)

Query:     2 TLEEXXXXXXXXXXXXXINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPS 61
             T EE             INGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFC  DP  
Sbjct:     4 TFEESLKSMSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCESDPSQ 63

Query:    62 -GLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPN 120
              G +PA  +    G  + A+   GVIPVNSVGYEVFLLLLQFLYSGQVSIVP KHEPR N
Sbjct:    64 PGAEPANQT----GSGARAAAVGGVIPVNSVGYEVFLLLLQFLYSGQVSIVPHKHEPRSN 119

Query:   121 CGERGCWHTHCTSXXXXXXXXXXXXRYFGVEQLALLTQKQLANMVEKASIEDVMKVLIAS 180
             CG+RGCWHTHCT+            RYFGVEQLALLTQK L +MVEKASIEDVMKVLIAS
Sbjct:   120 CGDRGCWHTHCTAAVDLSLDILAAARYFGVEQLALLTQKHLTSMVEKASIEDVMKVLIAS 179

Query:   181 RKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKXXXXXXXXXXXXXXXX 240
             RKQDMHQLWTTCS+L+AKSGLP E+LAKHLPIE+VAKIE+LR K                
Sbjct:   180 RKQDMHQLWTTCSYLIAKSGLPQEILAKHLPIELVAKIEELRLKSSMPLRSLMPHHHDLT 239

Query:   241 XXXXXXXXXXXXEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREV 300
                         EDQKIRRMRRALDSSDVELVKLMVMGEGLNLDE+LAL YAVENCSREV
Sbjct:   240 STLDL-------EDQKIRRMRRALDSSDVELVKLMVMGEGLNLDESLALIYAVENCSREV 292

Query:   301 VKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
             VKALLELGAADVNYPAGP GKT LHIAAEMVSPDMVAVLLDHHADPNV+TVDG+TPLDIL
Sbjct:   293 VKALLELGAADVNYPAGPTGKTALHIAAEMVSPDMVAVLLDHHADPNVQTVDGITPLDIL 352

Query:   361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPP 420
             RTLTSDFLFKGA+PGLTHIEPNKLRLCLELVQSAALV+SREEG  N  S+   T+IYP  
Sbjct:   353 RTLTSDFLFKGAIPGLTHIEPNKLRLCLELVQSAALVISREEG--NNNSNDNNTMIYPR- 409

Query:   421 MSCCSEEVHNNSSSGSATIXXXXXXXXXXXXVYLNLGAGTGNSAHHHHH 469
                  ++ H + SS  + +               N     G + HHHHH
Sbjct:   410 ----MKDEHTSGSSLDSRLVYLNLGATNRDIGDDNSNQREGMNLHHHHH 454

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0010022 "meristem determinacy" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010227 "floral organ abscission" evidence=IGI;RCA

GO:0010434 "bract formation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009954 "proximal/distal pattern formation" evidence=IGI;RCA

GO:0048439 "flower morphogenesis" evidence=IGI;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0010254 "nectary development" evidence=IGI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IGI

TAIR|locus:2133925 NPR4 "NPR1-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 5.6e-31, Sum P(2) = 5.6e-31
 Identities = 55/143 (38%), Positives = 81/143 (56%)

Query:   253 EDQKIRR---MRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGA 309
             ED+ I R   + +ALDS DVELVKL++    + LD+A  LHYAV     +VV  +L+L  
Sbjct:   247 EDKSIERTGKVLKALDSDDVELVKLLLTESDITLDQANGLHYAVAYSDPKVVTQVLDLDM 306

Query:   310 ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLF 369
             ADVN+     G T LHIAA    P ++  L+   A+ +  T DG + ++I R LT     
Sbjct:   307 ADVNF-RNSRGYTVLHIAAMRREPTIIIPLIQKGANASDFTFDGRSAVNICRRLTRP--- 362

Query:   370 KGAVPGLTHIEPNKLRLCLELVQ 392
             K      +  EP+K RLC+++++
Sbjct:   363 KDYHTKTSRKEPSKYRLCIDILE 385

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP;RCA;IMP

GO:0009620 "response to fungus" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=IGI;RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0080185 "effector dependent induction by symbiont of host immune response" evidence=IGI

GO:1901149 "salicylic acid binding" evidence=IDA

TAIR|locus:2153192 NPR3 "AT5G45110" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 2.0e-29, P = 2.0e-29
 Identities = 103/342 (30%), Positives = 156/342 (45%)

Query:    24 FSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPT 83
             +SD    V+G  V  HRCILAARS FF+  F               +I++    P  +  
Sbjct:    59 YSDAEIIVDGVPVGVHRCILAARSKFFQDLF-----------KKEKKISK-TEKPKYQLR 106

Query:    84 GVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSXXXXXXXXXX 143
              ++P  +V +E FL  L ++Y+G++   P +      C +  C H  C            
Sbjct:   107 EMLPYGAVAHEAFLYFLSYIYTGRLKPFPLEVS---TCVDPVCSHDCCRPAIDFVVQLMY 163

Query:   144 XXRYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPP 203
                   V +L    Q++L N VEK  +E+V+ +L+ +    + QL   C   VA+S L  
Sbjct:   164 ASSVLQVPELVSSFQRRLCNFVEKTLVENVLPILMVAFNCKLTQLLDQCIERVARSDLYR 223

Query:   204 EVLAKHLPIEVVAKIEDLRHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDQKIRRMRRA 263
               + K +P EV  KI+ LR                                ++I ++ +A
Sbjct:   224 FCIEKEVPPEVAEKIKQLRLISPQDEETSPKISEKLL--------------ERIGKILKA 269

Query:   264 LDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP 323
             LDS DVELVKL++    + LD+A  LHY+V     +VV  +L L   DVNY     G T 
Sbjct:   270 LDSDDVELVKLLLTESDITLDQANGLHYSVVYSDPKVVAEILALDMGDVNY-RNSRGYTV 328

Query:   324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTS 365
             LH AA    P ++  L+D  A+ +  T DG + ++ILR LT+
Sbjct:   329 LHFAAMRREPSIIISLIDKGANASEFTSDGRSAVNILRRLTN 370

GO:0005515 "protein binding" evidence=IPI

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=IGI;RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0080185 "effector dependent induction by symbiont of host immune response" evidence=IGI

GO:1901149 "salicylic acid binding" evidence=IDA

TAIR|locus:2014200 NPR1 "AT1G64280" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
 Identities = 50/136 (36%), Positives = 75/136 (55%)

Query:   257 IRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPA 316
             +  + +ALDS D+ELVKL++  +  NLD+A ALH+AV  C+ +    LL+L  ADVN+  
Sbjct:   267 VSNVHKALDSDDIELVKLLLKEDHTNLDDACALHFAVAYCNVKTATDLLKLDLADVNH-R 325

Query:   317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGL 376
              P G T LH+AA    P ++  LL+  A  +  T++G T L I +  T            
Sbjct:   326 NPRGYTVLHVAAMRKEPQLILSLLEKGASASEATLEGRTALMIAKQATMAVECNNIPEQC 385

Query:   377 THIEPNKLRLCLELVQ 392
              H    K RLC+E+++
Sbjct:   386 KH--SLKGRLCVEILE 399

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008219 "cell death" evidence=IGI

GO:0009617 "response to bacterium" evidence=RCA;IMP;TAS

GO:0009627 "systemic acquired resistance" evidence=IEP;RCA;TAS

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0009611 "response to wounding" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009625 "response to insect" evidence=RCA;IMP

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0009682 "induced systemic resistance" evidence=IMP

GO:0010112 "regulation of systemic acquired resistance" evidence=IMP

TAIR|locus:2120800 AT4G26120 "AT4G26120" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
 Identities = 54/140 (38%), Positives = 83/140 (59%)

Query:   254 DQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVN 313
             ++ ++ + +ALDS DVELVK++++    NLDEA ALH+A+ +C+ +    LLEL  ADVN
Sbjct:   263 ERHVKNIYKALDSDDVELVKMLLLEGHTNLDEAYALHFAIAHCAVKTAYDLLELELADVN 322

Query:   314 YPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAV 373
                 P G T LH+AA    P ++  LL   A+    T+DG T L I++ LT    +K + 
Sbjct:   323 L-RNPRGYTVLHVAAMRKEPKLIISLLMKGANILDTTLDGRTALVIVKRLTKADDYKTST 381

Query:   374 PGLTHIEPN-KLRLCLELVQ 392
                T   P+ K  LC+E+++
Sbjct:   382 EDGT---PSLKGGLCIEVLE 398

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 131 (51.2 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 39/120 (32%), Positives = 57/120 (47%)

Query:   254 DQKIRRMRRALDSSDVELVKLMVMGEGLNLDE---ALALHYAVENCSREVVKALLELGAA 310
             D K   +  A      ++V L++     N  +   +  +H A  N S   V+ LL+ G A
Sbjct:   111 DSKRTPLHYASSKGRSDIVDLLLTHGAKNRKDDTGSAPIHRASSNGSVATVERLLK-GEA 169

Query:   311 DVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFK 370
             ++N      G TPLHIAAE    D+V  LL H AD  +   D  TP+D+  + T  +L K
Sbjct:   170 NIN-STNNEGDTPLHIAAEYNHEDVVECLLKHGADTTIENKDSKTPIDMSSSQTIKYLIK 228

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|621887 Nfkbib "nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 33/79 (41%), Positives = 44/79 (55%)

Query:   279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
             E  N D    LH AV +   E+V+ L + GA D+N P    G+TPLH+A E  +  ++A+
Sbjct:   201 EAENYDGHTPLHVAVIHKDAEMVQLLRDAGA-DLNKPEPTCGRTPLHLAVEGQAAGVLAL 259

Query:   339 LLDHHADPNVRTVDGVTPL 357
             LL   ADP  R   G TPL
Sbjct:   260 LLKAGADPTARMYGGRTPL 278

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007165 "signal transduction" evidence=IDA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IMP

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IC

GO:0051059 "NF-kappaB binding" evidence=IC

MGI|MGI:104752 Nfkbib "nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 32/79 (40%), Positives = 43/79 (54%)

Query:   279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
             E  N D    LH AV +   E+V+ L + GA D+N P    G+TPLH+A E  +  ++ +
Sbjct:   201 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLEL 259

Query:   339 LLDHHADPNVRTVDGVTPL 357
             LL   ADP  R   G TPL
Sbjct:   260 LLKAGADPTARMYGGRTPL 278

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

UNIPROTKB|Q96DX5 ASB9 "Ankyrin repeat and SOCS box protein 9" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 41/132 (31%), Positives = 63/132 (47%)

Query:   269 VELVKLMVMGEGLNLDEALA-----LHYAVENCSREVVKALLELGAADVNYPAGPAGKTP 323
             VE V  ++   G N+D  ++     L+ A EN  R  VK LLE GA DVN   G    +P
Sbjct:   147 VECVNSLIAYGG-NIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ--GKGQDSP 202

Query:   324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL---RTLTSDFLFKGAVPGLTHIE 380
             LH  A   S ++  +L+D  AD   +  +G  P++++     L   FL +   P L  + 
Sbjct:   203 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLC 262

Query:   381 PNKLRLCLELVQ 392
               ++R C  + Q
Sbjct:   263 RLRIRKCFGIQQ 274

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0045732 "positive regulation of protein catabolic process" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M1I7	NPR6_ARATH	No assigned EC number	0.7410	0.8893	0.9635	no	no
Q9ZVC2	NPR5_ARATH	No assigned EC number	0.7790	0.9308	0.9592	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025314001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (490 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	506
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-14
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	5e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-12
pfam00651	101	pfam00651, BTB, BTB/POZ domain	2e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-06
pfam11900	48	pfam11900, DUF3420, Domain of unknown function (DU	2e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-05
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.003

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 4/89 (4%)

Query: 263 ALDSSDVELVKLMV-MGEGLNL-DEALALHYAVENCSREVVKALLELGAADVNYPAGPAG 320
           A  + ++ELVKL++  G  +NL D   ALH A  N + E+VK LLE GA DVN      G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGA-DVNAKDK-DG 61

Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVR 349
            T LH+AA   + ++V +LL+H AD N++
Sbjct: 62  NTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 8/102 (7%)

Query: 263 ALDSSDVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNYPAG 317
           A  +  +E+VKL++   G +++         LH A +N   E+VK LLE GA DVN    
Sbjct: 14  AASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNAR-D 70

Query: 318 PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
             G TPLH+AA   + D+V +LL H AD N R  DG TPL +
Sbjct: 71  KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 43/138 (31%)

Query: 26  DVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGV 85
           DVT  V G+  HAH+ +LAA S +F+  F      S                        
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKS--------------------E 40

Query: 86  IPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAA 145
           I ++ V  E F  LL FLY+G++ +                         +   + L  A
Sbjct: 41  IYLDDVSPEDFRALLNFLYTGKLDLPE-----------------------ENVEELLELA 77

Query: 146 RYFGVEQLALLTQKQLAN 163
            Y  +  L  L ++ L  
Sbjct: 78  DYLQIPGLVELCEEFLLK 95

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 35/70 (50%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  N   EVVK LLE G ADVN      G+TPLH+AA+    ++V +LL+  AD N
Sbjct: 10  PLHLAASNGHLEVVKLLLENG-ADVNAKD-NDGRTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 348 VRTVDGVTPL 357
            R  DG TPL
Sbjct: 68  ARDKDGNTPL 77

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 47/139 (33%)

Query: 15  LNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQG 74
           LN L       DVT  V  +  HAH+ +LAA S +F+  F G                  
Sbjct: 1   LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGN----------------- 43

Query: 75  PPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSA 134
                      I +  V  E F  LL+F+Y+G++ I  +  +                  
Sbjct: 44  -------KEVEITLEDVSPEDFEALLEFIYTGKLEITEENVD------------------ 78

Query: 135 VDLALDTLAAARYFGVEQL 153
                D LA A    +  L
Sbjct: 79  -----DLLALADKLQIPAL 92

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A +N + E+VK LLE GA DVN        T LH+AA   + ++V +LL+H AD N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA-DVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 349 RTVDGVTPLDI 359
           +  DG T L +
Sbjct: 57  KDKDGNTALHL 67

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 9/100 (9%)

Query: 268 DVELVKLMV-MGEGLNLDE---ALALHYAVEN-CSREVVKALLELGAADVNYPAGPAGKT 322
             ++V+L++  G  +N  E      LH  + N  + +V+K L++ GA DVN      G+T
Sbjct: 62  VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA-DVNAKDK-VGRT 119

Query: 323 PLHI--AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
           PLH+  +   ++P ++ +LL   AD N   + G+TPL +L
Sbjct: 120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL 159

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 37/84 (44%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 282 NLDEALALHYAVENCS-----REVVKALLELGA-ADVNYPAGPAGKTPLHIAAEMVSPDM 335
           + D    LH A  N +      EV K LLE GA  DVN      G TPLH AA     D+
Sbjct: 103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162

Query: 336 VAVLLDHHADPNVRTVDGVTPLDI 359
           V +LL+  ADPN R   GVT LD 
Sbjct: 163 VELLLEAGADPNSRNSYGVTALDP 186

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 288 ALHYAVENCSREV------------------VKALLELGAADVNYPAGPAGKTPLHIAAE 329
            LH  +E+   ++                  V  LL  G   +N      G TPLH A  
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGV-PINIK-DVYGFTPLHYAVY 201

Query: 330 MVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
             +P+ V  LLD  A+PN+    G TPL I
Sbjct: 202 NNNPEFVKYLLDLGANPNLVNKYGDTPLHI 231

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           LLE G  D+N      G TPLH+AA+  + ++V  LL    D N+R  DG+T LD+
Sbjct: 1   LLEHGPIDLNAT-DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 289 LHYAVENC-SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           LH +V  C   +++K LLE G  DVN  +   G T LH +  + S   + +LL++ AD N
Sbjct: 238 LHISVGYCKDYDILKLLLEHGV-DVNAKSYILGLTALHSS--IKSERKLKLLLEYGADIN 294

Query: 348 VRTVDGVTPL 357
                 +TPL
Sbjct: 295 SLNSYKLTPL 304

Length = 477

>gnl|CDD|192869 pfam11900, DUF3420, Domain of unknown function (DUF3420)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 200 GLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRR 259
            L    L K LP EVV KI+DLR KS L          +    D        L ++++RR
Sbjct: 1   DLDSISLEKELPDEVVKKIKDLRLKSQLDE-------PNVPEVD-------PLPEKRVRR 46

Query: 260 MR 261
           + 
Sbjct: 47  IH 48

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain is found associated with pfam00023. Length = 48

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           G+TPLH+AA     ++V +LL++ AD N +  DG TPL +
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHL 46

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLL 340
            LH A  N + +VVK LL+ GA DVN      G+TPLH+AA+    ++V +LL
Sbjct: 76  PLHLAARNGNLDVVKLLLKHGA-DVNARDK-DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LHYAV N + E VK LL+LGA + N      G TPLHIA    + ++  +LL++   P+
Sbjct: 195 PLHYAVYNNNPEFVKYLLDLGA-NPNL-VNKYGDTPLHIAILNNNKEIFKLLLNNG--PS 250

Query: 348 VRTVD 352
           ++T+ 
Sbjct: 251 IKTII 255

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LHYA++    E +K L E G ADVN      G  P+HIA +    D++ +LL+  A  NV
Sbjct: 128 LHYAIKKGDLESIKMLFEYG-ADVNI-EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 349 RTVDGVTPL 357
           +  +G +PL
Sbjct: 186 KDNNGESPL 194

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 282 NLDEALALHY-----AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA--EMVSPD 334
             + +  LHY           +E+VK LLE GA +VN P    G TPL  A   +  S  
Sbjct: 65  TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA-NVNAP-DNNGITPLLYAISKKSNSYS 122

Query: 335 MVAVLLDHHADPNVRTVDGVTPL 357
           +V  LLD+ A+ N++  DG   L
Sbjct: 123 IVEYLLDNGANVNIKNSDGENLL 145

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRT 350
           G TPLH+AA     ++V +LL+  AD N R 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 26/162 (16%)

Query: 251 DLEDQKIRRMRRALDSSDVELVKLMV-MGEGLNLDE----ALALHYAVENCSREVVKALL 305
            ++   I +  +  D  + E+ KL++  G  +N+ +      ALHYA EN  + + + LL
Sbjct: 130 TIDLVYIDKKSKD-DIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL 188

Query: 306 ELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL-------- 357
             GA +VN P      +PLH A +  +  +V +LL++ A  + R   G TPL        
Sbjct: 189 SYGA-NVNIP-DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK 246

Query: 358 --DILRTLT---SDFLFKGAVPGLT--HI---EPNKLRLCLE 389
             DIL+ L     D   K  + GLT  H       KL+L LE
Sbjct: 247 DYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLE 288

Length = 477

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           L YA++  + +  K L+  GA DVN  A  A  TPL+I+        + +LL + AD N+
Sbjct: 74  LIYAIDCDNDDAAKLLIRYGA-DVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINI 132

Query: 349 RTVDGVTPLDILRTLTSDFL---FKGAVPGLTHIEPNKLRLCLELVQS--AALVLSREEG 403
           +T D VTP+++   + ++FL            +  P K+ +  ++++   +  +L     
Sbjct: 133 QTNDMVTPIELALMICNNFLAFMICDNEISNFYKHPKKILINFDILKILVSHFILQASND 192

Query: 404 ILNE 407
            LNE
Sbjct: 193 RLNE 196

Length = 300

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 289 LHYAVENCSREVVKALLELG--AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADP 346
           LH AVE    + V+ LL+LG  A DV Y  G    TPLH+A  +   D++ +L+   ADP
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDG---MTPLHLATILKKLDIMKLLIARGADP 128

Query: 347 NVRTVDGVTPL 357
           ++   D  +PL
Sbjct: 129 DIPNTDKFSPL 139

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 263 ALDSSDVELVK-LMVMGEGLNLDE---ALALHYAVENCSREVVKALLELGA-ADVNYPAG 317
           A+   D+E +K L   G  +N+++      +H A+++   +++K LLE GA A+V     
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK---D 187

Query: 318 PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
             G++PLH AAE      + +L+DH      +  +G TPL
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPL 227

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLL 340
           ALH A  +   E+VK LLE G  D+N      G T LHIAAE  + +++ +LL
Sbjct: 4   ALHKAAISGRLELVKYLLEKG-VDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 270 ELVKLMVMGEGLNLDEALALHYAVENCS--REVVKALLELGAADVNYPAGPAGKTPLHIA 327
           EL++        ++     LH      S  R +V  LL  G   +N      G+TPLH A
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI-SINAR-NRYGQTPLHYA 264

Query: 328 AEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           A   +P     L+   AD N  + DG TPL
Sbjct: 265 AVFNNPRACRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 294 ENCSREVVKALLELGAADVNYPAGPAGKTPLHI---AAEMVSPDMVAVLLDHHADPNVRT 350
            N + E V+ LL  GA DVN+  G  GKTPLH+    +     D+V +LL+  AD N   
Sbjct: 23  SNVTVEEVRRLLAAGA-DVNF-RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPE 80

Query: 351 VDGVTPL 357
             G TPL
Sbjct: 81  RCGFTPL 87

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           G+TPLH+AAE  + ++V +LLD  AD N 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 15/88 (17%)

Query: 287 LALHYAVENCSREVVKALLELGA----ADVNYPAGPAGKTPLHIAAEMVS-----PDMVA 337
           L L+ A E  + +VVK LL+ GA    +  N        TPLH  + +        ++V 
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNN------STPLHYLSNIKYNLTDVKEIVK 90

Query: 338 VLLDHHADPNVRTVDGVTPLDILRTLTS 365
           +LL++ A+ N    +G+TPL    +  S
Sbjct: 91  LLLEYGANVNAPDNNGITPLLYAISKKS 118

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           T LH AA     ++V  LL+   D N    DG T L I
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHI 40

Length = 54

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 14/73 (19%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA-------------GKTPLHIAAEMVSPD 334
           ALH A    + E+VK LLE G A V   A                G++PL+ AA + SP 
Sbjct: 131 ALHLAAHRQNYEIVKLLLERG-ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS 189

Query: 335 MVAVLLDHHADPN 347
           +VA+L +  AD  
Sbjct: 190 IVALLSEDPADIL 202

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           G TPLH+AA   + ++V +LL+H AD N 
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G+TPLHIAA     D V VLL H  + ++R  +G T L
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 283 LDEALALHYAVENC----SREVVKA-LLELGAADVN---YPAGPAGKTPLHIAAEMVSPD 334
           +D  +A    VE C    S + V A +L  G AD N   Y     G+TPLHIA       
Sbjct: 74  IDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYD----GRTPLHIACANGHVQ 129

Query: 335 MVAVLLDHHADPNVRTVDGVTPLDI 359
           +V VLL+  ADP +   DG TPL++
Sbjct: 130 VVRVLLEFGADPTLLDKDGKTPLEL 154

Length = 664

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	506
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.91
PHA02876	682	ankyrin repeat protein; Provisional	99.91
PHA02713	557	hypothetical protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
KOG0510	929	consensus Ankyrin repeat protein [General function	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
KOG4591	280	consensus Uncharacterized conserved protein, conta	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.88
PHA02790	480	Kelch-like protein; Provisional	99.87
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.87
PHA02989	494	ankyrin repeat protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA03098	534	kelch-like protein; Provisional	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.82
PHA02795	437	ankyrin-like protein; Provisional	99.81
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.81
PHA02730	672	ankyrin-like protein; Provisional	99.81
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.76
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.76
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
PHA02743	166	Viral ankyrin protein; Provisional	99.74
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.73
KOG0514	452	consensus Ankyrin repeat protein [General function	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
PHA02736	154	Viral ankyrin protein; Provisional	99.71
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.62
PHA02792	631	ankyrin-like protein; Provisional	99.62
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.61
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.58
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.54
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.52
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.52
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.49
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.42
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.4
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.34
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
KOG4682	488	consensus Uncharacterized conserved protein, conta	99.3
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.23
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.2
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.97
PF13606	30	Ank_3: Ankyrin repeat	98.86
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.8
PF13606	30	Ank_3: Ankyrin repeat	98.71
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.63
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.56
KOG0522	560	consensus Ankyrin repeat protein [General function	98.52
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.49
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.48
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.46
KOG0522	560	consensus Ankyrin repeat protein [General function	98.43
KOG2838	401	consensus Uncharacterized conserved protein, conta	98.38
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.36
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.19
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.16
KOG0511	516	consensus Ankyrin repeat protein [General function	98.11
KOG2838	401	consensus Uncharacterized conserved protein, conta	98.08
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.01
KOG0511	516	consensus Ankyrin repeat protein [General function	98.01
KOG2384	223	consensus Major histocompatibility complex protein	97.98
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.9
KOG2384	223	consensus Major histocompatibility complex protein	97.82
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.8
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.7
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.56
KOG2716	230	consensus Polymerase delta-interacting protein PDI	97.48
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.02
KOG2505	591	consensus Ankyrin repeat protein [General function	96.81
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.66
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	96.58
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	96.51
KOG2505	591	consensus Ankyrin repeat protein [General function	96.13
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	96.03
KOG3473	112	consensus RNA polymerase II transcription elongati	95.98
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	94.74
KOG2714	465	consensus SETA binding protein SB1 and related pro	94.4
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.53
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	91.93
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.47
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.97
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	88.13
PHA02790	480	Kelch-like protein; Provisional	87.43
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.86
PHA02713	557	hypothetical protein; Provisional	84.51
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	80.81

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.2e-33  Score=237.57  Aligned_cols=174  Identities=23%  Similarity=0.214  Sum_probs=149.1

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCChHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLEL-GAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~v~~~~~~~g~tpLh  325 (506)
                      .|..|+|||||||..|+.+++.+|+...++.+     .||||||.||..|+.++|+.|+.+ |+ |+|..+ ..|.||||
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~a-dvna~t-n~G~T~LH  111 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGA-DVNATT-NGGQTCLH  111 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCC-Ccceec-CCCcceeh
Confidence            35689999999999999999999996666654     399999999999999999999999 88 999999 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCC
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGIL  405 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~  405 (506)
                      ||+..|+.+++++|+++|+.++++|..|.||||-|+.                  -++++++.+|+..|+.+|..     
T Consensus       112 yAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAa------------------vGklkvie~Li~~~a~~n~q-----  168 (226)
T KOG4412|consen  112 YAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAA------------------VGKLKVIEYLISQGAPLNTQ-----  168 (226)
T ss_pred             hhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHh------------------ccchhhHHHHHhcCCCCCcc-----
Confidence            9999999999999999999999999999999999997                  68999999999999999998     


Q ss_pred             CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhh
Q 010590          406 NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQ  470 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~  470 (506)
                            |..|+||||.|-....           .....++.  ..++++...|+.| |||-.|+.
T Consensus       169 ------Dk~G~TpL~~al~e~~-----------~d~a~lLV--~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  169 ------DKYGFTPLHHALAEGH-----------PDVAVLLV--RAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             ------cccCccHHHHHHhccC-----------chHHHHHH--HhccceeeccccC-chHHHHHH
Confidence                  5567799999722111           11111222  3447899999999 99888764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.4e-31  Score=226.22  Aligned_cols=169  Identities=22%  Similarity=0.205  Sum_probs=145.2

Q ss_pred             ccHHHHHHHhcCCHHHHHHHHhcCC------CCCCChHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCChHHHHHH
Q 010590          256 KIRRMRRALDSSDVELVKLMVMGEG------LNLDEALALHYAVENCSREVVKALLE-LGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       256 g~t~L~~A~~~g~~~~v~~Ll~~~~------~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      +.++.+.+|......-++-|++...      -|-+|+|||||||..|+.++|.+|++ .+. .+|.+| ..||||||+||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv-~~ddkD-daGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNV-KPDDKD-DAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCC-CCCCcc-ccCCchhhhhh
Confidence            5678888888888888888883211      14479999999999999999999995 455 899998 79999999999


Q ss_pred             HhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCC
Q 010590          329 EMVSPDMVAVLLDH-HADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNE  407 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~  407 (506)
                      ..|+.++|+.|+.+ |+|+|+.++.|.||||||+.                  +++.+++++|++.|+.++.+       
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag------------------K~r~eIaqlLle~ga~i~~k-------  135 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG------------------KGRLEIAQLLLEKGALIRIK-------  135 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc------------------CChhhHHHHHHhcCCCCccc-------
Confidence            99999999999999 99999999999999999997                  89999999999999999998       


Q ss_pred             CCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhh
Q 010590          408 PSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHH  468 (506)
Q Consensus       408 ~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~A  468 (506)
                          |..|.||||-|           +..+.+.++.+++.  .+..+|.+|+.||||||+|
T Consensus       136 ----D~~~qtplHRA-----------AavGklkvie~Li~--~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  136 ----DKQGQTPLHRA-----------AAVGKLKVIEYLIS--QGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             ----ccccCchhHHH-----------HhccchhhHHHHHh--cCCCCCcccccCccHHHHH
Confidence                55677999998           33345556666663  3388999999999999999

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.8e-29  Score=242.26  Aligned_cols=177  Identities=15%  Similarity=0.081  Sum_probs=143.8

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC---CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~---~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      ..|..|.||||+|+..|+.+++++|+ +.|+++   +|+||||+|+..|+.++|++|++.|+ +++.+| ..|+||||+|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll-~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Ga-dvn~~d-~~G~TpLh~A  101 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLL-NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGM-DDSQFD-DKGNTALYYA  101 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHH-HCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CCCCCC-CCCCCHHHHH
Confidence            46889999999999999999999999 677655   58999999999999999999999999 999998 8999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          328 AEMVSPDMVAVLLDHHADPNVRTVDGV-TPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       328 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      +..|+.+++++|+++|++++.++..|+ ||||+|+.                  .++.+++++|++.|++..  |     
T Consensus       102 a~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~------------------~g~~eivk~LL~~~~~~~--d-----  156 (284)
T PHA02791        102 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM------------------LNDVSIVSYFLSEIPSTF--D-----  156 (284)
T ss_pred             HHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHH------------------cCCHHHHHHHHhcCCccc--c-----
Confidence            999999999999999999999999886 89999997                  677788888887764321  0     


Q ss_pred             CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCc-chhhhhcCC
Q 010590          407 EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSA-HHHHHQMGS  473 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~-LH~Aa~~gs  473 (506)
                           ...|.||||+|+..           +...++++++  +.+.++|.+|..|+|| ||+|+.+|+
T Consensus       157 -----~~~g~TpLh~Aa~~-----------g~~eiv~lLL--~~gAd~n~~d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        157 -----LAILLSCIHITIKN-----------GHVDMMILLL--DYMTSTNTNNSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             -----cccCccHHHHHHHc-----------CCHHHHHHHH--HCCCCCCcccCCCCChHHHHHHHcCC
Confidence                 01367888887432           2233344444  2346778888888876 888888774

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=5.2e-29  Score=265.34  Aligned_cols=215  Identities=16%  Similarity=0.128  Sum_probs=150.5

Q ss_pred             ccccCCccccHHHHHHHhcCC--HHHHHHHHhcCCCCC-----CChHHHHHH----------------------------
Q 010590          248 AAADLEDQKIRRMRRALDSSD--VELVKLMVMGEGLNL-----DEALALHYA----------------------------  292 (506)
Q Consensus       248 ~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~d~-----~g~t~Lh~A----------------------------  292 (506)
                      .....|..|.||||+|+..|+  .++|++|| +.|+|+     +|+||||+|                            
T Consensus       204 DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLL-e~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~  282 (764)
T PHA02716        204 NVNLQNNHLITPLHTYLITGNVCASVIKKII-ELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIP  282 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccch
Confidence            344567889999999999995  58999999 788876     489999975                            


Q ss_pred             ---------HHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          293 ---------VENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE--MVSPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       293 ---------~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~--~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                               +..|+.+++++|++.|+ ++|.+| ..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+
T Consensus       283 ~~L~~~i~AA~~g~leiVklLLe~GA-dIN~kD-~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~  360 (764)
T PHA02716        283 MILHSYITLARNIDISVVYSFLQPGV-KLHYKD-SAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYL  360 (764)
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHhCCC-ceeccC-CCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHH
Confidence                     44578899999999999 999998 899999999864  46889999999999999999999999999986


Q ss_pred             H-------------------HHHHHHHcCCCCCCcccC--------------CChHHHHHHHHHhccCccccccC-----
Q 010590          362 T-------------------LTSDFLFKGAVPGLTHIE--------------PNKLRLCLELVQSAALVLSREEG-----  403 (506)
Q Consensus       362 ~-------------------~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~Ll~~ga~~~~~~~~-----  403 (506)
                      .                   .++.++..|++++.....              .+..+++++|++.|+..+..++.     
T Consensus       361 ~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll  440 (764)
T PHA02716        361 SMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLL  440 (764)
T ss_pred             HhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhh
Confidence            3                   233444556655443221              12345566666665433222110     


Q ss_pred             ------C---------------------------------------CCCCCCCCccccCCCCCCccCccCCCCCCCCCcc
Q 010590          404 ------I---------------------------------------LNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSAT  438 (506)
Q Consensus       404 ------~---------------------------------------~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~  438 (506)
                            +                                       ...++..+..|.||||+|+.++....      ..
T Consensus       441 ~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~------v~  514 (764)
T PHA02716        441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNAN------IV  514 (764)
T ss_pred             hccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccc------hh
Confidence                  0                                       01123345678888888843221000      00


Q ss_pred             ccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          439 INNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       439 ~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      +...++++  +.++++|.+|++|+||||+|++.|.
T Consensus       515 ~e~~k~LL--~~GADIN~~d~~G~TPLh~A~~~g~  547 (764)
T PHA02716        515 MDSFVYLL--SIQYNINIPTKNGVTPLMLTMRNNR  547 (764)
T ss_pred             HHHHHHHH--hCCCCCcccCCCCCCHHHHHHHcCC
Confidence            01123444  3458899999999999999999884

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=1.2e-28  Score=247.77  Aligned_cols=179  Identities=22%  Similarity=0.283  Sum_probs=154.8

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCCC------ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCh
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLD------EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKT  322 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~------g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~t  322 (506)
                      ....|++|.|+|||||.+++.+++++|+ ++|+|+|      |.||||||+++|+..+|++|+++|| |++.+| .+|.|
T Consensus        71 v~~~D~~g~tlLHWAAiNNrl~v~r~li-~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA-dpt~~D-~~G~~  147 (600)
T KOG0509|consen   71 VNNPDREGVTLLHWAAINNRLDVARYLI-SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA-DPTLKD-KQGLT  147 (600)
T ss_pred             CCCCCcCCccceeHHHHcCcHHHHHHHH-HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC-CCceec-CCCCc
Confidence            3445789999999999999999999999 8888886      5799999999999999999999999 999999 89999


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccccc
Q 010590          323 PLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREE  402 (506)
Q Consensus       323 pLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  402 (506)
                      |||.|++.|+.-+|-+||.+|+|+|.+|.+|+||||+|+.                  ++....+..||.-|+.++.+| 
T Consensus       148 ~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAay------------------kg~~~~v~~LL~f~a~~~~~d-  208 (600)
T KOG0509|consen  148 PLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAY------------------KGFALFVRRLLKFGASLLLTD-  208 (600)
T ss_pred             HHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHH------------------hcccHHHHHHHHhcccccccc-
Confidence            9999999999999999999999999999999999999996                  455555899999999999884 


Q ss_pred             CCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhc
Q 010590          403 GILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQM  471 (506)
Q Consensus       403 ~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~  471 (506)
                               +..|.||||+|+..+           ....+.+..  +.+.+...+|.+|.||+.+|.+.
T Consensus       209 ---------~~~g~TpLHwa~~~g-----------N~~~v~Ll~--~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  209 ---------DNHGNTPLHWAVVGG-----------NLTAVKLLL--EGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ---------cccCCchHHHHHhcC-----------CcceEehhh--hcCCcccccccCCCCHHHHHHHh
Confidence                     367789999984322           222333222  34478899999999999999887

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.4e-28  Score=251.55  Aligned_cols=189  Identities=19%  Similarity=0.272  Sum_probs=142.9

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCC-----------------------C-----CChHHHHHHHHcCCHHHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLN-----------------------L-----DEALALHYAVENCSREVVK  302 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d-----------------------~-----~g~t~Lh~A~~~g~~~~v~  302 (506)
                      ..+..|.||||.|+..|+.+++++|+ +.|++                       +     .|.||||+|+..|+.++|+
T Consensus        63 ~~~~~~~t~L~~A~~~~~~~iv~~Ll-~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~  141 (434)
T PHA02874         63 HINTKIPHPLLTAIKIGAHDIIKLLI-DNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIK  141 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHH
Confidence            34566788888888888888888887 44322                       2     3778888888888888888


Q ss_pred             HHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCC
Q 010590          303 ALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPN  382 (506)
Q Consensus       303 ~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~  382 (506)
                      +|+++|+ +++.+| ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .+
T Consensus       142 ~Ll~~ga-d~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~------------------~g  201 (434)
T PHA02874        142 MLFEYGA-DVNIED-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE------------------YG  201 (434)
T ss_pred             HHHhCCC-CCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------------cC
Confidence            8888888 888887 788888888888888888888888888888888888888888876                  67


Q ss_pred             hHHHHHHHHHhccCccccccCCCC--------------------CCCCCCccccCCCCCCccCccCCCCCCCCCcccccc
Q 010590          383 KLRLCLELVQSAALVLSREEGILN--------------------EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNN  442 (506)
Q Consensus       383 ~~~~~~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~  442 (506)
                      +.+++++|++.|++++.++..|.+                    .++..+..|.||||.|+...          .....+
T Consensus       202 ~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~----------~~~~iv  271 (434)
T PHA02874        202 DYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPP----------CDIDII  271 (434)
T ss_pred             CHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcC----------CcHHHH
Confidence            778888888888888877777753                    34566778999999984211          011233


Q ss_pred             ccccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          443 SLNLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       443 ~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      ++++  ..++++|.+|..|+||||+|++.+
T Consensus       272 ~~Ll--~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        272 DILL--YHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHH--HCcCCCCCCCCCCCCHHHHHHHhC
Confidence            4444  344789999999999999999887

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.8e-28  Score=253.59  Aligned_cols=144  Identities=24%  Similarity=0.218  Sum_probs=121.1

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLT  364 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~  364 (506)
                      |+||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. 
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~ga-d~n~~d-~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~-  244 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYGA-NVNIPD-KTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY-  244 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCCC-CCCCcC-CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh-
Confidence            8899999999999999999999999 999988 8899999999999999999999999999999999999999999852 


Q ss_pred             HHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccccccc
Q 010590          365 SDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSL  444 (506)
Q Consensus       365 ~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~  444 (506)
                                      .+..+++++|+++|++++.++.          ..|.||||+|+..             ...+.+
T Consensus       245 ----------------~~~~~iv~~Ll~~gadvn~~~~----------~~g~TpLh~A~~~-------------~~~v~~  285 (477)
T PHA02878        245 ----------------CKDYDILKLLLEHGVDVNAKSY----------ILGLTALHSSIKS-------------ERKLKL  285 (477)
T ss_pred             ----------------cCCHHHHHHHHHcCCCCCccCC----------CCCCCHHHHHccC-------------HHHHHH
Confidence                            3578999999999999998732          3688999998321             123344


Q ss_pred             ccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          445 NLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       445 ~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      ++  ..++++|.+|.+|+||||+|++.+
T Consensus       286 Ll--~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        286 LL--EYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             HH--HCCCCCCCcCCCCCCHHHHHHHHc
Confidence            44  355899999999999999999865

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.5e-28  Score=223.25  Aligned_cols=180  Identities=17%  Similarity=0.099  Sum_probs=148.3

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHh-cCCCCCCChHHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVM-GEGLNLDEALALHYAVENC--SREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      ...+.||||+|+..|+.++|+.|+. ....|..|.||||+|+..+  +.+++++|+++|+ ++|.+++..|+||||+|+.
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga-dvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGA-DVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCC-CCCccCCCCCCCHHHHHHH
Confidence            5678999999999999999999993 2234667999999999855  8999999999999 9999973589999999886


Q ss_pred             h---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          330 M---VSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       330 ~---~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      .   ++.+++++|+++|+++|.+|..|.||||+|+..                ..++.+++++|++.|++++.+      
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~----------------~~~~~~iv~~Li~~gadin~~------  154 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCN----------------FNVRINVIKLLIDSGVSFLNK------  154 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh----------------ccCCHHHHHHHHHcCCCcccc------
Confidence            4   479999999999999999999999999998741                035789999999999999988      


Q ss_pred             CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          407 EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                           +..|.||||.++..          .+...++++++  ..++++|.+|..|+||||+|+.++
T Consensus       155 -----d~~g~t~Lh~~a~~----------~~~~~iv~~Ll--~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        155 -----DFDNNNILYSYILF----------HSDKKIFDFLT--SLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             -----cCCCCcHHHHHHHh----------cCCHHHHHHHH--HcCCCCCCCCCCCCCHHHHHhhhh
Confidence                 55677999964211          11223344454  345889999999999999999765

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=2e-27  Score=249.72  Aligned_cols=206  Identities=20%  Similarity=0.209  Sum_probs=118.1

Q ss_pred             CccccHHHHHHHhcC---CHHHHHHHHhcCCCCC-----CChHHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          253 EDQKIRRMRRALDSS---DVELVKLMVMGEGLNL-----DEALALHYAVENC-SREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g-~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      +..|.||||+|+..|   +.+++++|+ +.|+|+     +|+||||+|+..| +.+++++|+++|+ ++|.++ ..|+||
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga-~in~~~-~~g~tp  120 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA-DVNAKD-KVGRTP  120 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC-CCCCCC-CCCCCH
Confidence            444555555555555   555555555 444443     2555555555555 3555555555555 555555 555555


Q ss_pred             HHHHH--HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-------HHHHHHHcCCCCCCcccC------------CC
Q 010590          324 LHIAA--EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT-------LTSDFLFKGAVPGLTHIE------------PN  382 (506)
Q Consensus       324 Lh~A~--~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~-------~~~~~l~~~~~~~~~~~~------------~~  382 (506)
                      ||+|+  ..++.+++++|+++|++++.+|..|.||||+|+.       ..+.++..|+++......            .+
T Consensus       121 Lh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~  200 (471)
T PHA03095        121 LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKP  200 (471)
T ss_pred             HHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCC
Confidence            55555  3345555555555555555555555555555542       223333444444332111            23


Q ss_pred             hHHHHHHHHHhccCccccccCCCC------------------------CCCCCCccccCCCCCCccCccCCCCCCCCCcc
Q 010590          383 KLRLCLELVQSAALVLSREEGILN------------------------EPSSSTATVIYPPPMSCCSEEVHNNSSSGSAT  438 (506)
Q Consensus       383 ~~~~~~~Ll~~ga~~~~~~~~~~~------------------------~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~  438 (506)
                      ..++++.|++.|++++.+|..|.+                        .++..+..|.||||+|+..           +.
T Consensus       201 ~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~-----------~~  269 (471)
T PHA03095        201 RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVF-----------NN  269 (471)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-----------CC
Confidence            445666677777777766665532                        2334567788999988432           12


Q ss_pred             ccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          439 INNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       439 ~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      ...+.+++  ..++++|.+|.+|+||||+|+..|+.
T Consensus       270 ~~~v~~LL--~~gad~n~~~~~g~tpl~~A~~~~~~  303 (471)
T PHA03095        270 PRACRRLI--ALGADINAVSSDGNTPLSLMVRNNNG  303 (471)
T ss_pred             HHHHHHHH--HcCCCCcccCCCCCCHHHHHHHhCCH
Confidence            23334444  34578999999999999999988864

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=246.18  Aligned_cols=182  Identities=14%  Similarity=0.102  Sum_probs=150.5

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCC--HHHHHHHHHcCCCCCCC-CCCCCCC
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCS--REVVKALLELGAADVNY-PAGPAGK  321 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~--~~~v~~Ll~~g~~~v~~-~~~~~g~  321 (506)
                      ...|..|.||||+|+..|+.++|++|| ++|+|+     +|+||||+|+..++  .+++++|+++|+ ++|. .| ..|.
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL-~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Ga-din~~~d-~~g~  142 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIVAMLL-THGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA-KINNSVD-EEGC  142 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC-CcccccC-CCCC
Confidence            346889999999999999999999999 677765     48999999998764  789999999999 9996 45 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccc
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSRE  401 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~  401 (506)
                      |||| |+..|+.+++++|++.|++++.+|..|+||||+|+..                .....+++++|++.|++++.+ 
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~----------------~~~~~~~v~~Ll~~Gadin~~-  204 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS----------------DNPKASTISWMMKLGISPSKP-  204 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHh----------------cCCCHHHHHHHHHcCCCCccc-
Confidence            9997 6778999999999999999999999999999999852                134578899999999999988 


Q ss_pred             cCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          402 EGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       402 ~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                                +..|.||||+|+....         .......+.+.   +.++|.+|..|+||||+|+..|+.
T Consensus       205 ----------d~~G~TpLH~Aa~~~~---------~~~~iv~lLl~---gadin~~d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        205 ----------DHDGNTPLHIVCSKTV---------KNVDIINLLLP---STDVNKQNKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             ----------CCCCCCHHHHHHHcCC---------CcHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHhCCh
Confidence                      5567799999842211         11222333332   378999999999999999999863

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.4e-27  Score=244.09  Aligned_cols=186  Identities=19%  Similarity=0.225  Sum_probs=157.0

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCC-----------------
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGA-----------------  309 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~-----------------  309 (506)
                      .+..|.||||.|+..|+.++|++|+ +.|+++     .|.||||+|+..|+.+++++|+++|+                 
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll-~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~  109 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFI-KHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT  109 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence            4678899999999999999999999 778766     37899999999999999999988765                 


Q ss_pred             -----CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChH
Q 010590          310 -----ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKL  384 (506)
Q Consensus       310 -----~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~  384 (506)
                           .+++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.                  .++.
T Consensus       110 ll~~g~d~n~~~-~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~------------------~~~~  170 (434)
T PHA02874        110 ILDCGIDVNIKD-AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIK------------------HNFF  170 (434)
T ss_pred             HHHCcCCCCCCC-CCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH------------------CCcH
Confidence                 0566777 799999999999999999999999999999999999999999998                  7889


Q ss_pred             HHHHHHHHhccCccccccCCCC----------------------CCCCCCccccCCCCCCccCccCCCCCCCCCcccccc
Q 010590          385 RLCLELVQSAALVLSREEGILN----------------------EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNN  442 (506)
Q Consensus       385 ~~~~~Ll~~ga~~~~~~~~~~~----------------------~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~  442 (506)
                      +++++|++.|++++.++..|.+                      .++..+..|.||||.|+....            ..+
T Consensus       171 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~------------~~i  238 (434)
T PHA02874        171 DIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR------------SAI  238 (434)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh------------HHH
Confidence            9999999999999999888853                      344566789999998843211            111


Q ss_pred             ccccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          443 SLNLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       443 ~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      .+.+.   ..++|.+|..|+||||+|++.|
T Consensus       239 ~~Ll~---~~~in~~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        239 ELLIN---NASINDQDIDGSTPLHHAINPP  265 (434)
T ss_pred             HHHHc---CCCCCCcCCCCCCHHHHHHhcC
Confidence            12221   2678999999999999999876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.4e-27  Score=240.17  Aligned_cols=180  Identities=29%  Similarity=0.336  Sum_probs=151.3

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      .+.-..-++.|++.|.++.|+.|++..|.     |.+|.|+||||+.+++.+++++|+++|+ +||...+.-|.||||||
T Consensus        41 ~d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-dvn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   41 EDSSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGA-DVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             cchhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCC-CccccCCCCCCCcchHH
Confidence            44456788999999999999999943354     3468999999999999999999999999 99999888999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCC
Q 010590          328 AEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNE  407 (506)
Q Consensus       328 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~  407 (506)
                      +++|+..+|.+|+++|||++++|.+|.||||+|++                  .++.-++.+||.+|+|++.+       
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~------------------~~~~~~vayll~~~~d~d~~-------  174 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQ------------------FGHTALVAYLLSKGADIDLR-------  174 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHH------------------hCchHHHHHHHHhcccCCCc-------
Confidence            99999999999999999999999999999999998                  68888999999999999999       


Q ss_pred             CCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCC-CCCCCcchhhhhcCCCC
Q 010590          408 PSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGA-GTGNSAHHHHHQMGSSR  475 (506)
Q Consensus       408 ~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D-~~G~T~LH~Aa~~gs~~  475 (506)
                          |..|.||||+|+....         +......+...    ..++..| .+|+||||+|+..|.-.
T Consensus       175 ----D~~grTpLmwAaykg~---------~~~v~~LL~f~----a~~~~~d~~~g~TpLHwa~~~gN~~  226 (600)
T KOG0509|consen  175 ----DNNGRTPLMWAAYKGF---------ALFVRRLLKFG----ASLLLTDDNHGNTPLHWAVVGGNLT  226 (600)
T ss_pred             ----CCCCCCHHHHHHHhcc---------cHHHHHHHHhc----ccccccccccCCchHHHHHhcCCcc
Confidence                5566699999832111         11111122222    5688888 99999999999999544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.3e-27  Score=248.78  Aligned_cols=205  Identities=17%  Similarity=0.164  Sum_probs=133.4

Q ss_pred             cccHHHHHHHhc--CCHHHHHHHHhcCCCCCC----ChHHHHHHHHcC------CHHHHHHHHHcCCCCCCCCCCCCCCh
Q 010590          255 QKIRRMRRALDS--SDVELVKLMVMGEGLNLD----EALALHYAVENC------SREVVKALLELGAADVNYPAGPAGKT  322 (506)
Q Consensus       255 ~g~t~L~~A~~~--g~~~~v~~Ll~~~~~d~~----g~t~Lh~A~~~g------~~~~v~~Ll~~g~~~v~~~~~~~g~t  322 (506)
                      .|.||||+++..  ++.++|++|| ++|+|++    +.||||.|+.++      +.++|++|+++|+ |+|.+| ..|+|
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll-~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Ga-din~~d-~~g~t  110 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLI-DNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGA-DINLKT-FNGVS  110 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHH-HcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCC-CCCCCC-CCCCc
Confidence            455666544332  2566666666 5566554    456666665543      3456666666666 666666 66666


Q ss_pred             HHHHHHHh---CCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH-------HHHHHHHcCCCCCCc-c------------
Q 010590          323 PLHIAAEM---VSPDMVAVLLDHHADP-NVRTVDGVTPLDILRT-------LTSDFLFKGAVPGLT-H------------  378 (506)
Q Consensus       323 pLh~A~~~---~~~~~v~~Ll~~ga~~-~~~d~~g~tpLh~A~~-------~~~~~l~~~~~~~~~-~------------  378 (506)
                      |||.|+..   |+.+++++|+++|||+ +.+|..|+||||+|+.       .++.++..|++++.. .            
T Consensus       111 pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh
Confidence            66666543   4566666666666666 5666666666666542       234445566655431 1            


Q ss_pred             --cCCChHHHHHHHHHhccCccccccCCC---------------------------CCCCCCCccccCCCCCCccCccCC
Q 010590          379 --IEPNKLRLCLELVQSAALVLSREEGIL---------------------------NEPSSSTATVIYPPPMSCCSEEVH  429 (506)
Q Consensus       379 --~~~~~~~~~~~Ll~~ga~~~~~~~~~~---------------------------~~~~~~~~~~~tplh~a~~~~~~~  429 (506)
                        ...++.+++++|+++|++++.++..+.                           +.++..+..|.||||.|+..    
T Consensus       191 ~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~----  266 (494)
T PHA02989        191 NDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV----  266 (494)
T ss_pred             cccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh----
Confidence              123467889999999999998876443                           23466788899999998432    


Q ss_pred             CCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCCC
Q 010590          430 NNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSR  475 (506)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~~  475 (506)
                             +....+++++  +.++++|.+|..|+||||+|+..|...
T Consensus       267 -------~~~~~v~~LL--~~Gadin~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        267 -------DNYEAFNYLL--KLGDDIYNVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             -------cCHHHHHHHH--HcCCCccccCCCCCCHHHHHHHcCCHH
Confidence                   2233445555  355899999999999999999999643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=6e-27  Score=246.63  Aligned_cols=197  Identities=22%  Similarity=0.215  Sum_probs=149.9

Q ss_pred             cCCccccHHHHH-----HHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRR-----ALDSSDVELVKLMVMGEGLNL-----DEALALHYAV--ENCSREVVKALLELGAADVNYPAGP  318 (506)
Q Consensus       251 ~~~~~g~t~L~~-----A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~--~~g~~~~v~~Ll~~g~~~v~~~~~~  318 (506)
                      ..+..|.||||+     |+..|+.+++++|+ +.|+++     .|.||||+|+  ..|+.+++++|+++|+ +++..+ .
T Consensus        63 ~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll-~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~-~~~~~~-~  139 (480)
T PHA03100         63 SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLL-EYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA-NVNIKN-S  139 (480)
T ss_pred             CccccCcCHHHHHHHHHHHhhchHHHHHHHH-HCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCC-CCCccC-C
Confidence            345667888888     88888888888888 666654     4778888888  8888888888888888 888887 7


Q ss_pred             CCChHHHHHHHhC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-----HHHHHHHcCCCCCCcccC-----------
Q 010590          319 AGKTPLHIAAEMV--SPDMVAVLLDHHADPNVRTVDGVTPLDILRT-----LTSDFLFKGAVPGLTHIE-----------  380 (506)
Q Consensus       319 ~g~tpLh~A~~~~--~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~~~~~~~~~-----------  380 (506)
                      .|+||||+|+..|  +.+++++|+++|++++.+|..|+||||+|+.     ....++..|++++.....           
T Consensus       140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l  219 (480)
T PHA03100        140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL  219 (480)
T ss_pred             CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH
Confidence            8888888888888  8888888888888888888888888888874     345555567766544221           


Q ss_pred             -----CCh--HHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCccee
Q 010590          381 -----PNK--LRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVY  453 (506)
Q Consensus       381 -----~~~--~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (506)
                           .++  .++++.|++.|++++.+           +..|.||||.|+...           ....+++++  +.+++
T Consensus       220 ~~a~~~~~~~~~iv~~Ll~~g~din~~-----------d~~g~TpL~~A~~~~-----------~~~iv~~Ll--~~gad  275 (480)
T PHA03100        220 HIAACYNEITLEVVNYLLSYGVPINIK-----------DVYGFTPLHYAVYNN-----------NPEFVKYLL--DLGAN  275 (480)
T ss_pred             HHHHHhCcCcHHHHHHHHHcCCCCCCC-----------CCCCCCHHHHHHHcC-----------CHHHHHHHH--HcCCC
Confidence                 344  78899999999998887           456779999984322           233445555  34579


Q ss_pred             eccCCCCCCCcchhhhhcCCC
Q 010590          454 LNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       454 ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      +|.+|..|+||||+|++.|..
T Consensus       276 ~n~~d~~g~tpl~~A~~~~~~  296 (480)
T PHA03100        276 PNLVNKYGDTPLHIAILNNNK  296 (480)
T ss_pred             CCccCCCCCcHHHHHHHhCCH
Confidence            999999999999999998854

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.3e-26  Score=223.83  Aligned_cols=166  Identities=12%  Similarity=0.104  Sum_probs=138.0

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-hHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGK-TPLHIAA  328 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~-tpLh~A~  328 (506)
                      .|.||||+|+..|+.+++++|+ ..|+++     .|+||||+|+..|+.+++++|+++|+ +++.++ ..|+ ||||+|+
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL-~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ga-din~~~-~~g~~TpL~~Aa  136 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILL-FSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-RLMFYG-KTGWKTSFYHAV  136 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CcCccC-CCCCcHHHHHHH
Confidence            4689999999999999999999 667654     58999999999999999999999999 999988 6775 8999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCC
Q 010590          329 EMVSPDMVAVLLDHHADPNVRT-VDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNE  407 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~  407 (506)
                      ..|+.++|++|+++|++.  .| ..|+||||+|+.                  .++.+++++|+++|++++.+|      
T Consensus       137 ~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~------------------~g~~eiv~lLL~~gAd~n~~d------  190 (284)
T PHA02791        137 MLNDVSIVSYFLSEIPST--FDLAILLSCIHITIK------------------NGHVDMMILLLDYMTSTNTNN------  190 (284)
T ss_pred             HcCCHHHHHHHHhcCCcc--cccccCccHHHHHHH------------------cCCHHHHHHHHHCCCCCCccc------
Confidence            999999999999987653  23 358999999998                  789999999999999999874      


Q ss_pred             CCCCCccccCC-CCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhh
Q 010590          408 PSSSTATVIYP-PPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHH  468 (506)
Q Consensus       408 ~~~~~~~~~tp-lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~A  468 (506)
                           ..|.|| ||.|+.           .+...++++++  +.++++|.+|..| |||+.|
T Consensus       191 -----~~g~t~~L~~Aa~-----------~~~~e~v~lLl--~~Ga~in~~~~~~-~~l~~~  233 (284)
T PHA02791        191 -----SLLFIPDIKLAID-----------NKDLEMLQALF--KYDINIYSVNLEN-VLLDDA  233 (284)
T ss_pred             -----CCCCChHHHHHHH-----------cCCHHHHHHHH--HCCCCCccCcccC-ccCCCH
Confidence                 455566 999842           23344555555  3558999999954 888665

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=243.89  Aligned_cols=205  Identities=19%  Similarity=0.117  Sum_probs=148.9

Q ss_pred             ccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC--C-CCChHHHHHHHHcCCHH
Q 010590          223 HKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL--N-LDEALALHYAVENCSRE  299 (506)
Q Consensus       223 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--d-~~g~t~Lh~A~~~g~~~  299 (506)
                      ..+||.........................|..|.||||+||..|+.++++.|+. .+.  + ..+.+||+.|+..++.+
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIR-SINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHH-HHhccccccchhhHHHHHHcCCHH
Confidence            4556655544333333222222222334456677777777777777777777772 221  1 13566777766665433


Q ss_pred             ---------------------------------HHHHHHHcCCCCCCCCCCCC-CChHHHHHHHhCCHHHHHHHHHCCCC
Q 010590          300 ---------------------------------VVKALLELGAADVNYPAGPA-GKTPLHIAAEMVSPDMVAVLLDHHAD  345 (506)
Q Consensus       300 ---------------------------------~v~~Ll~~g~~~v~~~~~~~-g~tpLh~A~~~~~~~~v~~Ll~~ga~  345 (506)
                                                       ++++|+++|+ ++|.++ .. |+||||+|+..|+.+++++|+++|++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~ga-din~~~-~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA-DINMKD-RHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCC-CCCccC-CCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence                                             6777888899 999998 66 99999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccC
Q 010590          346 PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCS  425 (506)
Q Consensus       346 ~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~  425 (506)
                      ++.+|..|+||||+|+.                  .++.++++.|++.|++++.+           +..|.||||+|+..
T Consensus       194 ~n~~d~~g~tpLh~A~~------------------~~~~~iv~~Ll~~ga~in~~-----------d~~g~TpLh~A~~~  244 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVK------------------HYNKPIVHILLENGASTDAR-----------DKCGNTPLHISVGY  244 (477)
T ss_pred             CCCcCCCCCCHHHHHHH------------------hCCHHHHHHHHHcCCCCCCC-----------CCCCCCHHHHHHHh
Confidence            99999999999999998                  68899999999999999987           55677999998421


Q ss_pred             ccCCCCCCCCCccccccccccCCCcceeeccCCC-CCCCcchhhhhc
Q 010590          426 EEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAG-TGNSAHHHHHQM  471 (506)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~-~G~T~LH~Aa~~  471 (506)
                      .          .....+++++  ..++++|.++. .|+||||+|+.+
T Consensus       245 ~----------~~~~iv~~Ll--~~gadvn~~~~~~g~TpLh~A~~~  279 (477)
T PHA02878        245 C----------KDYDILKLLL--EHGVDVNAKSYILGLTALHSSIKS  279 (477)
T ss_pred             c----------CCHHHHHHHH--HcCCCCCccCCCCCCCHHHHHccC
Confidence            1          1223444455  35588999986 899999999543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=1e-26  Score=244.64  Aligned_cols=195  Identities=15%  Similarity=0.168  Sum_probs=153.6

Q ss_pred             ccCCccccHHHHHHHhc-----CCHHHHHHHHhcCCCCC-----CChHHHHHHHHcC---CHHHHHHHHHcCCCCCCCCC
Q 010590          250 ADLEDQKIRRMRRALDS-----SDVELVKLMVMGEGLNL-----DEALALHYAVENC---SREVVKALLELGAADVNYPA  316 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g---~~~~v~~Ll~~g~~~v~~~~  316 (506)
                      ...|..|.||||.|+..     +..+++++|+ +.|+|+     +|+||||+|+..+   +.+++++|+++|+ +++.+|
T Consensus        65 n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll-~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga-dvn~~d  142 (489)
T PHA02798         65 NGLDNEYSTPLCTILSNIKDYKHMLDIVKILI-ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGA-DTTLLD  142 (489)
T ss_pred             CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHH-HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCC-CccccC
Confidence            34578899999998864     6789999999 788876     4899999999976   7899999999999 999999


Q ss_pred             CCCCChHHHHHHHhCC---HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH
Q 010590          317 GPAGKTPLHIAAEMVS---PDMVAVLLDHHADPNVRT-VDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ  392 (506)
Q Consensus       317 ~~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~  392 (506)
                       ..|.||||+|++.++   .+++++|+++|++++.++ ..|.||||.++...              ......+++++|++
T Consensus       143 -~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~--------------~~~~~~~ivk~Li~  207 (489)
T PHA02798        143 -KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYN--------------IDRIDADILKLFVD  207 (489)
T ss_pred             -CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhc--------------cccCCHHHHHHHHH
Confidence             899999999999988   999999999999999985 57899999887421              11335566666666


Q ss_pred             hccCccccccCCCC----------------------------CCCCCCccccCCCCCCccCccCCCCCCCCCcccccccc
Q 010590          393 SAALVLSREEGILN----------------------------EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSL  444 (506)
Q Consensus       393 ~ga~~~~~~~~~~~----------------------------~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~  444 (506)
                      +|++++..+..+++                            +++..+..|.||||.|+..           +....+++
T Consensus       208 ~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~-----------~~~~~v~~  276 (489)
T PHA02798        208 NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH-----------NNRKIFEY  276 (489)
T ss_pred             CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc-----------CcHHHHHH
Confidence            66666655443322                            3445577899999998432           22334555


Q ss_pred             ccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          445 NLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       445 ~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      ++  ..++++|.+|..|+||||+|+..|+.
T Consensus       277 LL--~~GAdin~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        277 LL--QLGGDINIITELGNTCLFTAFENESK  304 (489)
T ss_pred             HH--HcCCcccccCCCCCcHHHHHHHcCcH
Confidence            65  35689999999999999999999864

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4e-26  Score=235.62  Aligned_cols=176  Identities=22%  Similarity=0.226  Sum_probs=100.3

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCC------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGL------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      +..+.||||+|+..|+.++++.|+ +.|.      +.+|.||||+|+..|+.+++++|+++|+ +++.++ ..|+||||+
T Consensus        65 ~~~~~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga-d~~~~~-~~g~tpLh~  141 (413)
T PHA02875         65 YPDIESELHDAVEEGDVKAVEELL-DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA-DPDIPN-TDKFSPLHL  141 (413)
T ss_pred             CCCcccHHHHHHHCCCHHHHHHHH-HcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCC-CCCCCHHHH
Confidence            344566666666666666666666 3332      1235666666666666666666666666 666665 566666666


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++..+..|. 
T Consensus       142 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~------------------~g~~eiv~~Ll~~ga~~n~~~~~~~-  202 (413)
T PHA02875        142 AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA------------------KGDIAICKMLLDSGANIDYFGKNGC-  202 (413)
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHhCCCCCCcCCCCCC-
Confidence            666666666666666666666666666666666665                  4566666666666666666533222 


Q ss_pred             CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccC---CCCCCCcchhhhhcC
Q 010590          407 EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLG---AGTGNSAHHHHHQMG  472 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~---D~~G~T~LH~Aa~~g  472 (506)
                               .||+|+|+.           .+....+++++  ++++++|..   |..|.|||++++..+
T Consensus       203 ---------~t~l~~A~~-----------~~~~~iv~~Ll--~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        203 ---------VAALCYAIE-----------NNKIDIVRLFI--KRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             ---------chHHHHHHH-----------cCCHHHHHHHH--HCCcCcchHhhcCCCchHHHHHHHhhc
Confidence                     356665521           11222333443  233455443   555666766666544

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=5.5e-26  Score=234.75  Aligned_cols=174  Identities=17%  Similarity=0.090  Sum_probs=144.4

Q ss_pred             ccHHHHHHHh--cCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHH
Q 010590          256 KIRRMRRALD--SSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       256 g~t~L~~A~~--~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      +.++||.++.  .++.++|++|+ +.|+|+     +|+||||+|+..|+.++|++||++|+ ++|.+| ..|+||||+|+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GA-din~~d-~~g~TpLh~A~  113 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELL-HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGA-DPNACD-KQHKTPLYYLS  113 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHH-HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCCC-CCCCCHHHHHH
Confidence            4799998764  45789999999 677765     48999999999999999999999999 999999 89999999998


Q ss_pred             HhC--CHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCC
Q 010590          329 EMV--SPDMVAVLLDHHADPNV-RTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGIL  405 (506)
Q Consensus       329 ~~~--~~~~v~~Ll~~ga~~~~-~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~  405 (506)
                      ..+  ..+++++|+++|++++. .|..|.||||.|.                   .++.++++.|++.|++++.+     
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~-------------------~~~~~vv~~Ll~~gad~~~~-----  169 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACT-------------------DPSERVFKKIMSIGFEARIV-----  169 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHH-------------------CCChHHHHHHHhcccccccc-----
Confidence            866  47999999999999995 6899999998544                   57889999999999999988     


Q ss_pred             CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          406 NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                            +..|.||||.|..+..         .....+++++  +.++++|.+|.+|+||||+|+..|.
T Consensus       170 ------d~~G~t~Lh~A~~~~~---------~~~~~v~~Ll--~~Gadin~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        170 ------DKFGKNHIHRHLMSDN---------PKASTISWMM--KLGISPSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             ------CCCCCCHHHHHHHhcC---------CCHHHHHHHH--HcCCCCcccCCCCCCHHHHHHHcCC
Confidence                  4567799998743211         1122334444  3458999999999999999999874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=235.41  Aligned_cols=200  Identities=22%  Similarity=0.259  Sum_probs=163.1

Q ss_pred             HHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC-
Q 010590          261 RRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENC---SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV-  331 (506)
Q Consensus       261 ~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g---~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~-  331 (506)
                      ..|+..++.++|++|+ +.|+|+     .|.||||+|+..+   +.+++++|++.|+ ++|.++ ..|+||||+|+..| 
T Consensus        19 ~~~~~~~~~~~v~~Ll-~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga-din~~~-~~g~TpLh~A~~~~~   95 (471)
T PHA03095         19 LLNASNVTVEEVRRLL-AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA-DVNAPE-RCGFTPLHLYLYNAT   95 (471)
T ss_pred             HHcCCCCCHHHHHHHH-HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC-CCCCCC-CCCCCHHHHHHHcCC
Confidence            6678889999999999 778766     3899999999999   9999999999999 999999 89999999999999 


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-------HHHHHHHcCCCCCCcccC------------CChHHHHHHHHH
Q 010590          332 SPDMVAVLLDHHADPNVRTVDGVTPLDILRT-------LTSDFLFKGAVPGLTHIE------------PNKLRLCLELVQ  392 (506)
Q Consensus       332 ~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~-------~~~~~l~~~~~~~~~~~~------------~~~~~~~~~Ll~  392 (506)
                      ..+++++|+++|++++.+|..|+||||+|+.       ....++..|++++.....            ....++++.|++
T Consensus        96 ~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095         96 TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             cHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            5999999999999999999999999999992       455667788887664322            235688999999


Q ss_pred             hccCccccccCCCC------------------------CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCC
Q 010590          393 SAALVLSREEGILN------------------------EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDS  448 (506)
Q Consensus       393 ~ga~~~~~~~~~~~------------------------~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (506)
                      .|++++..|..|.+                        .++..+..|.||||+|+..+.         .....+...+  
T Consensus       176 ~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~---------~~~~~v~~ll--  244 (471)
T PHA03095        176 AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS---------CKRSLVLPLL--  244 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC---------chHHHHHHHH--
Confidence            99999998777753                        455778889999999853221         0111222222  


Q ss_pred             CcceeeccCCCCCCCcchhhhhcCCC
Q 010590          449 SRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       449 ~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      ..++++|.+|..|+||||+|+..|..
T Consensus       245 ~~g~din~~d~~g~TpLh~A~~~~~~  270 (471)
T PHA03095        245 IAGISINARNRYGQTPLHYAAVFNNP  270 (471)
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            33478999999999999999998743

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.93  E-value=7.8e-26  Score=238.16  Aligned_cols=204  Identities=24%  Similarity=0.269  Sum_probs=155.3

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHH-----HHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHY-----AVENCSREVVKALLELGAADVNYPAGPAG  320 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~-----A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g  320 (506)
                      ..+..+.||||+|+..|+.++|++|+ +.|+++     +|.||||+     |+..++.+++++|++.|+ +++..+ ..|
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll-~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga-~i~~~d-~~g  106 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILL-DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA-NVNAPD-NNG  106 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHH-HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCC-CCCCCC-CCC
Confidence            34678999999999999999999999 777765     37899999     999999999999999999 999998 899


Q ss_pred             ChHHHHHH--HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------HHHHHHcCCCCCCccc----------CC
Q 010590          321 KTPLHIAA--EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL-------TSDFLFKGAVPGLTHI----------EP  381 (506)
Q Consensus       321 ~tpLh~A~--~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~-------~~~~l~~~~~~~~~~~----------~~  381 (506)
                      .||||+|+  ..|+.+++++|+++|++++..|..|.||||+|+..       ...++..|++++....          ..
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~  186 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK  186 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence            99999999  99999999999999999999999999999999952       2233445555433322          23


Q ss_pred             ChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCC
Q 010590          382 NKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTG  461 (506)
Q Consensus       382 ~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G  461 (506)
                      ++.+++++|++.|++++..+..|......     .||||.|+....         .....+++.+  ..++++|.+|..|
T Consensus       187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~-----~t~l~~a~~~~~---------~~~~iv~~Ll--~~g~din~~d~~g  250 (480)
T PHA03100        187 GNIDVIKFLLDNGADINAGDIETLLFTIF-----ETPLHIAACYNE---------ITLEVVNYLL--SYGVPINIKDVYG  250 (480)
T ss_pred             CCHHHHHHHHHcCCCccCCCCCCCcHHHH-----HhHHHHHHHhCc---------CcHHHHHHHH--HcCCCCCCCCCCC
Confidence            44556666666666666554333211100     677887732111         1133344444  3457899999999


Q ss_pred             CCcchhhhhcCC
Q 010590          462 NSAHHHHHQMGS  473 (506)
Q Consensus       462 ~T~LH~Aa~~gs  473 (506)
                      +||||+|+..|+
T Consensus       251 ~TpL~~A~~~~~  262 (480)
T PHA03100        251 FTPLHYAVYNNN  262 (480)
T ss_pred             CCHHHHHHHcCC
Confidence            999999999874

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=232.38  Aligned_cols=180  Identities=22%  Similarity=0.221  Sum_probs=151.7

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCChHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVN-YPAGPAGKTPL  324 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~-~~~~~~g~tpL  324 (506)
                      ..+..|.||||+|+..|+.+++++|+ +.|+++     ++.||||+|+..|+.++|++|++.|+ +++ ..+ ..|+|||
T Consensus        30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~-~~g~tpL  106 (413)
T PHA02875         30 FEIYDGISPIKLAMKFRDSEAIKLLM-KHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK-FADDVFY-KDGMTPL  106 (413)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC-ccccccc-CCCCCHH
Confidence            44568999999999999999999999 667644     47899999999999999999999998 654 444 7899999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.++..|+||||+|+.                  .++.++++.|++.|++++.+    
T Consensus       107 ~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~------------------~~~~~~v~~Ll~~g~~~~~~----  164 (413)
T PHA02875        107 HLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVM------------------MGDIKGIELLIDHKACLDIE----  164 (413)
T ss_pred             HHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHhcCCCCCCC----
Confidence            99999999999999999999999999999999999998                  78899999999999999887    


Q ss_pred             CCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCC-CcchhhhhcCCCC
Q 010590          405 LNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGN-SAHHHHHQMGSSR  475 (506)
Q Consensus       405 ~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~-T~LH~Aa~~gs~~  475 (506)
                             +..|.||||+|+..           +....+++++  ..++++|..|..|. ||||+|+..|...
T Consensus       165 -------d~~g~TpL~~A~~~-----------g~~eiv~~Ll--~~ga~~n~~~~~~~~t~l~~A~~~~~~~  216 (413)
T PHA02875        165 -------DCCGCTPLIIAMAK-----------GDIAICKMLL--DSGANIDYFGKNGCVAALCYAIENNKID  216 (413)
T ss_pred             -------CCCCCCHHHHHHHc-----------CCHHHHHHHH--hCCCCCCcCCCCCCchHHHHHHHcCCHH
Confidence                   55677999998431           2233445555  34588999998885 8999999999653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.93  E-value=7.5e-26  Score=241.24  Aligned_cols=183  Identities=14%  Similarity=0.097  Sum_probs=145.1

Q ss_pred             CccccHHHHHHHh--cCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          253 EDQKIRRMRRALD--SSDVELVKLMVMGEGLNL-----DEALALHYAVENCS--REVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       253 ~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~--~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      |..|.||||+|+.  .++.+++++|+ +.|+|+     +|.||||+|+..|+  .++|++||++|+ |+|.+| ..|+||
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLL-e~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA-DVN~kD-~~G~TP  250 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLC-NNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGG-DMDMKC-VNGMSP  250 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC-CCCCCC-CCCCCH
Confidence            7789999999865  46899999999 778766     48999999999995  589999999999 999999 899999


Q ss_pred             HHHH-------------------------------------HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHH
Q 010590          324 LHIA-------------------------------------AEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSD  366 (506)
Q Consensus       324 Lh~A-------------------------------------~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~  366 (506)
                      ||+|                                     +..|+.+++++|+++|++++.+|..|+||||+|+...  
T Consensus       251 Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~--  328 (764)
T PHA02716        251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH--  328 (764)
T ss_pred             HHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh--
Confidence            9975                                     3457889999999999999999999999999987410  


Q ss_pred             HHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCC---CCCCCCccccccc
Q 010590          367 FLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHN---NSSSGSATINNNS  443 (506)
Q Consensus       367 ~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~---~~~~~~~~~~~~~  443 (506)
                                    .++.+++++|++.|++++.+           +..|.||||+|........   ......+...+++
T Consensus       329 --------------~~~~eIVklLLe~GADIN~k-----------D~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVk  383 (764)
T PHA02716        329 --------------NISTDIIKLLHEYGNDLNEP-----------DNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQ  383 (764)
T ss_pred             --------------CCCchHHHHHHHcCCCCccC-----------CCCCCCHHHHHHHhhhhhccccccccccChHHHHH
Confidence                          35678999999999999988           5567799998632100000   0000112334455


Q ss_pred             cccCCCcceeeccCCCCCCCcchh
Q 010590          444 LNLDSSRLVYLNLGAGTGNSAHHH  467 (506)
Q Consensus       444 ~~~~~~~~~~ln~~D~~G~T~LH~  467 (506)
                      +++  +.++++|.+|..|+||||.
T Consensus       384 lLL--~~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        384 CLI--SLGADITAVNCLGYTPLTS  405 (764)
T ss_pred             HHH--HCCCCCCCcCCCCCChHHH
Confidence            555  3568999999999999994

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3.4e-25  Score=242.57  Aligned_cols=173  Identities=22%  Similarity=0.165  Sum_probs=95.0

Q ss_pred             ChHHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          285 EALALHYAVENCSR-EVVKALLELGAADVNYPAGPAGKTPLHIAAEMV-SPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       285 g~t~Lh~A~~~g~~-~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~-~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      |.||||+|+..++. +++++|++.|+ +++.+| ..|+||||+|+..| ..+++++|+..|++++.+|..|+||||+|+.
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~ga-din~~d-~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGA-DVNAKN-IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCC-CCCCcC-CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHH
Confidence            55666666666654 35666666666 666666 56666666666666 3666666666666666666666666666653


Q ss_pred             ------HHHHHHHcCCCCCCcc----------cCCChHHHHHHHHHhccCccccccCCC---------------------
Q 010590          363 ------LTSDFLFKGAVPGLTH----------IEPNKLRLCLELVQSAALVLSREEGIL---------------------  405 (506)
Q Consensus       363 ------~~~~~l~~~~~~~~~~----------~~~~~~~~~~~Ll~~ga~~~~~~~~~~---------------------  405 (506)
                            ....++..|++++...          ...++.++++.|++.|++++..+..|+                     
T Consensus       351 ~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~  430 (682)
T PHA02876        351 LDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLID  430 (682)
T ss_pred             hCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHh
Confidence                  1223344555544332          224555666666666666666555443                     


Q ss_pred             --CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhc
Q 010590          406 --NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQM  471 (506)
Q Consensus       406 --~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~  471 (506)
                        +.++..+..|.||||+|+...          ....++++++  ..++++|.+|..|+||||+|+.+
T Consensus       431 ~gadin~~d~~G~TpLh~Aa~~~----------~~~~iv~lLl--~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        431 RGANVNSKNKDLSTPLHYACKKN----------CKLDVIEMLL--DNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             CCCCCCcCCCCCChHHHHHHHhC----------CcHHHHHHHH--HCCCCCCCCCCCCCCHHHHHHHh
Confidence              123344555666666653210          0111223333  23356666666666666666654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.3e-25  Score=229.81  Aligned_cols=214  Identities=25%  Similarity=0.247  Sum_probs=152.4

Q ss_pred             HhhcccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC---------CCCChHHH
Q 010590          219 EDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL---------NLDEALAL  289 (506)
Q Consensus       219 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------d~~g~t~L  289 (506)
                      .+..+.|||.........................|..|.+|+|.|++.|..++.+..+.++|.         |.+|.|||
T Consensus       150 ~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pL  229 (929)
T KOG0510|consen  150 EDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPL  229 (929)
T ss_pred             cccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcch
Confidence            444567777776655554432333344455556678888888888888888888888854442         22478899


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC--------------CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc
Q 010590          290 HYAVENCSREVVKALLELGAAD--------------VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVT  355 (506)
Q Consensus       290 h~A~~~g~~~~v~~Ll~~g~~~--------------v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t  355 (506)
                      |.|+..|+.++++.+|+.|+.+              +|..| ..|.||||+||+.|+.++++.|+..||+++.++.++.|
T Consensus       230 hlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d-~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s  308 (929)
T KOG0510|consen  230 HLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDED-NDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEES  308 (929)
T ss_pred             hhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccc-ccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCC
Confidence            9999999999999888887621              33455 78889999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH-hccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCC
Q 010590          356 PLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ-SAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSS  434 (506)
Q Consensus       356 pLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~  434 (506)
                      |||.|+.                  .++...|+.||+ .|.    +      ..+..|-.|.||||+|+           
T Consensus       309 pLH~AA~------------------yg~~ntv~rLL~~~~~----r------llne~D~~g~tpLHlaa-----------  349 (929)
T KOG0510|consen  309 PLHFAAI------------------YGRINTVERLLQESDT----R------LLNESDLHGMTPLHLAA-----------  349 (929)
T ss_pred             chHHHHH------------------cccHHHHHHHHhCcCc----c------ccccccccCCCchhhhh-----------
Confidence            9999887                  677888888887 321    1      12234677889999983           


Q ss_pred             CCccccccccccCCCcceeec--cCCCCCCCcchhhhhcCC
Q 010590          435 GSATINNNSLNLDSSRLVYLN--LGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~ln--~~D~~G~T~LH~Aa~~gs  473 (506)
                      .++...++++++++. ..++|  ..|.+|+||||+||+.|.
T Consensus       350 ~~gH~~v~qlLl~~G-A~~~~~~e~D~dg~TaLH~Aa~~g~  389 (929)
T KOG0510|consen  350 KSGHDRVVQLLLNKG-ALFLNMSEADSDGNTALHLAAKYGN  389 (929)
T ss_pred             hcCHHHHHHHHHhcC-hhhhcccccccCCchhhhHHHHhcc
Confidence            334444556666422 23343  559999999999999873

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=6.9e-26  Score=218.78  Aligned_cols=177  Identities=21%  Similarity=0.161  Sum_probs=151.9

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-------------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-------------DEALALHYAVENCSREVVKALLELGAADVNYPAGP  318 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-------------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~  318 (506)
                      ...+|.|||-.||++||.++|++|++..++++             +|.+||..|+..||.++||.|+++|+ +||... .
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga-~VN~tT-~  115 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGA-SVNDTT-R  115 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcC-cccccc-c
Confidence            35678899999999999999999996555543             47899999999999999999999999 999988 7


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcc
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVL  398 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  398 (506)
                      .+.|||--||.-|+.++|++|+++|||+++.|+.|.|.||+||.                  +++.+|+++|++.|||+|
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~y------------------kGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACY------------------KGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeec------------------cCchHHHHHHHHhCCCcc
Confidence            88899999999999999999999999999999999999999997                  899999999999999999


Q ss_pred             ccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          399 SREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      .+           +..|+|+||.+           ++++.+.++++++......+   .|..|.|||-.|+.+|.
T Consensus       178 ~k-----------s~kGNTALH~c-----------aEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  178 AK-----------SYKGNTALHDC-----------AESGSVDIVQLLLKHGAKID---VDGHGMTPLLLAAVTGH  227 (615)
T ss_pred             hh-----------cccCchHHHhh-----------hhcccHHHHHHHHhCCceee---ecCCCCchHHHHhhhcc
Confidence            98           56677999997           34455555555543222233   45569999999999994

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=231.89  Aligned_cols=201  Identities=13%  Similarity=0.041  Sum_probs=151.9

Q ss_pred             cCCccccHHHHHHHhc---CCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDS---SDVELVKLMVMGEGLNL-----DEALALHYAVENCSR----EVVKALLELGAADVNYPAGP  318 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~v~~~~~~  318 (506)
                      ..|..|.||||+|+..   |+.++|++|| ..|+|+     +|+||||+|+..|+.    ++++.|++.+. .+|..+  
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll-~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~-~~n~~~--  102 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLL-DSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATG-YSNIND--  102 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHH-HCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccC-CCCCCC--
Confidence            4588999999998666   8899999999 788766     489999999999985    45688888766 555543  


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcc
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVL  398 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  398 (506)
                       ..+++|+|+..|+.++|++|+++|+|+|.+|.+|+||||+|+..                ..++.+++++|+++||+++
T Consensus       103 -~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~----------------~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917        103 -FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMT----------------DDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             -cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHc----------------cCCCHHHHHHHHHcCCCcc
Confidence             34788889999999999999999999999999999999976531                1579999999999999999


Q ss_pred             ccccC---CCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          399 SREEG---ILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       399 ~~~~~---~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      .+|.+   |.+..+.....+.||||+|+.+....-......+...++++++  +.++++|.+|.+|+||||+|+.+|+.
T Consensus       166 ~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li--~~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        166 YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLI--NHGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             ccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHH--HCCCCcccCCCCCCcHHHHHHHcCCC
Confidence            77653   3222233345678999998432110000000112233445555  34589999999999999999999974

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.2e-24  Score=236.27  Aligned_cols=149  Identities=23%  Similarity=0.237  Sum_probs=119.2

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCC------CCCChHHHHHHH---------------------------------
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGL------NLDEALALHYAV---------------------------------  293 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------d~~g~t~Lh~A~---------------------------------  293 (506)
                      +..+.||||+|+..|+.++|+.|++ ...      |..|.||||+|+                                 
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~-~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  116 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQ-QNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHK  116 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHH-hCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence            4568899999999999999999993 232      335888888655                                 


Q ss_pred             -------------------------------------HcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHH
Q 010590          294 -------------------------------------ENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMV  336 (506)
Q Consensus       294 -------------------------------------~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v  336 (506)
                                                           ..|+.+++++|++.|+ ++|.+| ..|+||||+|+..|+.++|
T Consensus       117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Ga-dvn~~d-~~G~TpLh~Aa~~G~~~iv  194 (682)
T PHA02876        117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGA-DVNAKD-IYCITPIHYAAERGNAKMV  194 (682)
T ss_pred             HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCC-CCCCCC-CCCCCHHHHHHHCCCHHHH
Confidence                                                 5578899999999999 999999 8999999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHH-----HHHHHHHcCCCCCC------cccCCChHHHHHHHHHhccCccccccCC
Q 010590          337 AVLLDHHADPNVRTVDGVTPLDILRT-----LTSDFLFKGAVPGL------THIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       337 ~~Ll~~ga~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~~~~~------~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      ++|+++|++++..+.+|.||||+|+.     ..+.++..+.....      .....+..+++.+|++.|++++.+|..|
T Consensus       195 ~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g  273 (682)
T PHA02876        195 NLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK  273 (682)
T ss_pred             HHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999999999999999999999994     33444444443322      1233566777888888888888775544

>PHA02713 hypothetical protein; Provisional

Probab=99.90  E-value=9.4e-24  Score=223.70  Aligned_cols=148  Identities=16%  Similarity=0.255  Sum_probs=133.7

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEEC-CeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVE-GRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPT   83 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~-~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   83 (506)
                      ..|+..+++.|+.||.++.+|||+|+|+ |++|+|||+||||+|+||++||+++|+|+.                   .+
T Consensus         6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~-------------------~~   66 (557)
T PHA02713          6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRD-------------------LV   66 (557)
T ss_pred             hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhc-------------------cC
Confidence            7899999999999999999999999997 899999999999999999999999999752                   25


Q ss_pred             ceEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 010590           84 GVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAN  163 (506)
Q Consensus        84 ~~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~  163 (506)
                      .+|+|+++++++|+.+|+|+|||++  +.                       +.+.+|+.+|+.|+++.++..|.++|..
T Consensus        67 ~~v~l~~v~~~~~~~ll~y~Yt~~i--~~-----------------------~nv~~ll~aA~~lqi~~l~~~C~~~l~~  121 (557)
T PHA02713         67 TRVNLQMFDKDAVKNIVQYLYNRHI--SS-----------------------MNVIDVLKCADYLLIDDLVTDCESYIKD  121 (557)
T ss_pred             ceEEeccCCHHHHHHHHHHhcCCCC--CH-----------------------HHHHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence            7899999999999999999999974  22                       3478999999999999999999999986


Q ss_pred             HHhhhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc
Q 010590          164 MVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       164 ~l~~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~  199 (506)
                      .+   +.+||+.++..+..+.+..|.+.|.+|+..+
T Consensus       122 ~l---~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~  154 (557)
T PHA02713        122 YT---NHDTCIYMYHRLYEMSHIPIVKYIKRMLMSN  154 (557)
T ss_pred             hC---CccchHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            65   7899999998888888888999998888766

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.4e-23  Score=195.21  Aligned_cols=142  Identities=17%  Similarity=0.187  Sum_probs=124.1

Q ss_pred             cCCccccHHHHHHHhcC--CHHHHHHHHhcCCCCC------CChHHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSS--DVELVKLMVMGEGLNL------DEALALHYAVEN---CSREVVKALLELGAADVNYPAGPA  319 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~d~------~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~v~~~~~~~  319 (506)
                      ..+..|.||||+|+..+  +.+++++|+ +.|+|+      +|+||||+|+..   ++.+++++|+++|+ ++|.+| ..
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll-~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~ga-din~~d-~~  122 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLI-ENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGS-SITEED-ED  122 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHH-HCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCC-CCCCcC-CC
Confidence            35788999999999854  899999999 777765      478999998864   47999999999999 999999 89


Q ss_pred             CChHHHHHHH--hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCc
Q 010590          320 GKTPLHIAAE--MVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALV  397 (506)
Q Consensus       320 g~tpLh~A~~--~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~  397 (506)
                      |.||||+|+.  .++.+++++|+++|++++.+|.+|.||||.++..                 .++.+++.+|++.|+++
T Consensus       123 G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~-----------------~~~~~iv~~Ll~~Gadi  185 (209)
T PHA02859        123 GKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILF-----------------HSDKKIFDFLTSLGIDI  185 (209)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHh-----------------cCCHHHHHHHHHcCCCC
Confidence            9999999976  4689999999999999999999999999975432                 57889999999999999


Q ss_pred             cccccCCCCCCCCCCccccCCCCCCc
Q 010590          398 LSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      +.+           +..|.||||+|.
T Consensus       186 ~~~-----------d~~g~tpl~la~  200 (209)
T PHA02859        186 NET-----------NKSGYNCYDLIK  200 (209)
T ss_pred             CCC-----------CCCCCCHHHHHh
Confidence            988           556779999983

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1e-23  Score=216.10  Aligned_cols=186  Identities=22%  Similarity=0.235  Sum_probs=129.0

Q ss_pred             cccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCC
Q 010590          247 AAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLE-----LGAADVNYPA  316 (506)
Q Consensus       247 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~-----~g~~~v~~~~  316 (506)
                      ......|+.|.||||.||..++.+..+.|+ +.|+|+     +|.+|+|.|+..|..++.+..+.     ++. .+|.-+
T Consensus       145 ~dvnl~de~~~TpLh~A~~~~~~E~~k~Li-~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~-~in~~~  222 (929)
T KOG0510|consen  145 ADVNLEDENGFTPLHLAARKNKVEAKKELI-NKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQT-HINFDN  222 (929)
T ss_pred             CCccccccCCCchhhHHHhcChHHHHHHHH-hcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhc-cccccc
Confidence            344445666677777777777777556666 555533     46677777777777777776666     555 666666


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHCCCC---------------CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCC
Q 010590          317 GPAGKTPLHIAAEMVSPDMVAVLLDHHAD---------------PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEP  381 (506)
Q Consensus       317 ~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---------------~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~  381 (506)
                       .+|.||||.|+..|+.++++.+|+.|+.               +|..|++|.||||+|++                  .
T Consensus       223 -n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r------------------~  283 (929)
T KOG0510|consen  223 -NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAAR------------------Q  283 (929)
T ss_pred             -CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHH------------------c
Confidence             6777777777777777777777766432               24456677777777776                  7


Q ss_pred             ChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccccc-ccccCCCcceeeccCCCC
Q 010590          382 NKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNN-SLNLDSSRLVYLNLGAGT  460 (506)
Q Consensus       382 ~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ln~~D~~  460 (506)
                      |+.+.+..|+..|++++.+           +.++.||||.|+           ..+++..+ +++- ......+|..|-.
T Consensus       284 G~~~svd~Ll~~Ga~I~~k-----------n~d~~spLH~AA-----------~yg~~ntv~rLL~-~~~~rllne~D~~  340 (929)
T KOG0510|consen  284 GGPESVDNLLGFGASINSK-----------NKDEESPLHFAA-----------IYGRINTVERLLQ-ESDTRLLNESDLH  340 (929)
T ss_pred             CChhHHHHHHHcCCccccc-----------CCCCCCchHHHH-----------HcccHHHHHHHHh-CcCcccccccccc
Confidence            8889999999999999988           567779999982           22334444 2222 2344689999999


Q ss_pred             CCCcchhhhhcCCCCC
Q 010590          461 GNSAHHHHHQMGSSRM  476 (506)
Q Consensus       461 G~T~LH~Aa~~gs~~~  476 (506)
                      |+||||+|+++|+.|.
T Consensus       341 g~tpLHlaa~~gH~~v  356 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRV  356 (929)
T ss_pred             CCCchhhhhhcCHHHH
Confidence            9999999999997664

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.5e-23  Score=224.89  Aligned_cols=219  Identities=17%  Similarity=0.134  Sum_probs=156.7

Q ss_pred             cccCCccccHHHHHHH--hcCCHHHHHHHHhcCCCCCC--------C-----------hHHHHHHHH-----------cC
Q 010590          249 AADLEDQKIRRMRRAL--DSSDVELVKLMVMGEGLNLD--------E-----------ALALHYAVE-----------NC  296 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~d~~--------g-----------~t~Lh~A~~-----------~g  296 (506)
                      ....|..|+||||.|+  ..|+.+++++|+ ++|+|++        |           .||||+|+.           .+
T Consensus       129 in~~d~~g~T~L~~~~a~~~~~~eivklLi-~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~  207 (661)
T PHA02917        129 LSVKCENHRSVIENYVMTDDPVPEIIDLFI-ENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYV  207 (661)
T ss_pred             CCccCCCCccHHHHHHHccCCCHHHHHHHH-HcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccC
Confidence            3345788999999643  578999999999 7788763        3           499999986           46


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCH--HHHHHHHHCCCCCC----CCCCCCCcHHHHHHH--------
Q 010590          297 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSP--DMVAVLLDHHADPN----VRTVDGVTPLDILRT--------  362 (506)
Q Consensus       297 ~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~--~~v~~Ll~~ga~~~----~~d~~g~tpLh~A~~--------  362 (506)
                      +.++|++|+++|+ |+|.+| ..|+||||+|+..|+.  ++|++|++ |++++    ..|..|.||+|+|+.        
T Consensus       208 ~~eiv~~Li~~Ga-dvn~~d-~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~  284 (661)
T PHA02917        208 RPEVVKCLINHGI-KPSSID-KNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYN  284 (661)
T ss_pred             cHHHHHHHHHCCC-CcccCC-CCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhcccc
Confidence            8899999999999 999998 8999999999999985  79999975 88875    467778888888882        


Q ss_pred             ------HHHHHHHcCCCCCCcc--------------------------------cCCC--hHHHHHHHHHhccCcccccc
Q 010590          363 ------LTSDFLFKGAVPGLTH--------------------------------IEPN--KLRLCLELVQSAALVLSREE  402 (506)
Q Consensus       363 ------~~~~~l~~~~~~~~~~--------------------------------~~~~--~~~~~~~Ll~~ga~~~~~~~  402 (506)
                            .++.++..|++.....                                ...+  ..+++++|++.||+++.++.
T Consensus       285 ~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~  364 (661)
T PHA02917        285 KDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAI  364 (661)
T ss_pred             ccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCc
Confidence                  2455666776532100                                0011  24589999999999999988


Q ss_pred             CCCCC-------------------CCCCCccccCCCCCCccCccCCCC------------CCCCCccccccccccCCCcc
Q 010590          403 GILNE-------------------PSSSTATVIYPPPMSCCSEEVHNN------------SSSGSATINNNSLNLDSSRL  451 (506)
Q Consensus       403 ~~~~~-------------------~~~~~~~~~tplh~a~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~  451 (506)
                      .|.++                   +...+..|.||||.|+.+...+..            .....+....+.+.+  +.+
T Consensus       365 ~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll--~~G  442 (661)
T PHA02917        365 HGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICL--PYL  442 (661)
T ss_pred             cccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHH--HCC
Confidence            88642                   334456799999987543321100            000011122223333  345


Q ss_pred             eeeccCCCCCCCcchhhhhcCC
Q 010590          452 VYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       452 ~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      +++|.+|..|+||||+|+..|.
T Consensus       443 AdIN~kd~~G~TpLh~Aa~~~~  464 (661)
T PHA02917        443 KDINMIDKRGETLLHKAVRYNK  464 (661)
T ss_pred             CCCCCCCCCCcCHHHHHHHcCC
Confidence            7899999999999999998774

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.90  E-value=1.3e-22  Score=174.99  Aligned_cols=209  Identities=20%  Similarity=0.351  Sum_probs=166.1

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEEC---CeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCC
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVE---GRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASR   81 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~---~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~   81 (506)
                      ++|++.++.....|++..+|+|++|.++   ++.|||||.||||||+||+  |.++-.|                     
T Consensus        47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de---------------------  103 (280)
T KOG4591|consen   47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE---------------------  103 (280)
T ss_pred             hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc---------------------
Confidence            7899999999999999999999999997   5789999999999999997  4443333                     


Q ss_pred             CCceEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010590           82 PTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQL  161 (506)
Q Consensus        82 ~~~~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l  161 (506)
                      ...+..++++++++|...++||||++++..+++                     .|..++++.|.+|+++.++..|++.+
T Consensus       104 kse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD---------------------~~L~el~e~An~FqLe~Lke~C~k~l  162 (280)
T KOG4591|consen  104 KSEELDLDDADFEAFHTAIRWIYTDEIDFKEDD---------------------EFLLELCELANRFQLELLKERCEKGL  162 (280)
T ss_pred             chhhhcccccCHHHHHHhheeeeccccccccch---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            235677889999999999999999999988776                     77899999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc--CCChhhhhccchHHHHHHHHhhcccchhHHHhhccccccc
Q 010590          162 ANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS--GLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHH  239 (506)
Q Consensus       162 ~~~l~~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~--~~~~~~l~~~L~~~~~~~l~~~~~~~~l~~a~~~~~~~~~  239 (506)
                      ...+   .++||++++.++......+|+..|..+++..  .+.+..+ .++...+++++.+                   
T Consensus       163 ~a~l---~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~F-aqMs~aLLYklId-------------------  219 (280)
T KOG4591|consen  163 GALL---HVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADF-AQMSAALLYKLID-------------------  219 (280)
T ss_pred             hhHh---hHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHH-HhccHHHHHHHHc-------------------
Confidence            8776   7999999999999999999999999998755  5555554 3344455555544                   


Q ss_pred             ccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhc---------CCCCCCChHHHHHHHH
Q 010590          240 HHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMG---------EGLNLDEALALHYAVE  294 (506)
Q Consensus       240 ~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------~~~d~~g~t~Lh~A~~  294 (506)
                                    .+...|||-|+.-+..+++-+-+-+         +.+|.+|..+|-+|..
T Consensus       220 --------------~kTe~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~  269 (280)
T KOG4591|consen  220 --------------GKTENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALC  269 (280)
T ss_pred             --------------CCCcchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHH
Confidence                          3445566666666666665543311         2235567777766654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.2e-23  Score=219.49  Aligned_cols=128  Identities=23%  Similarity=0.360  Sum_probs=111.0

Q ss_pred             ccccHHHHHHH--hcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          254 DQKIRRMRRAL--DSSDVELVKLMVMGEGLNL-----DEALALHYAVEN-----CSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       254 ~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      ..|.|+++.+.  ..++.++|++|+ ++|+|+     .|.||||+|+.+     ++.+++++|+++|+ |+|.+| ..|+
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga-diN~~d-~~G~  110 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFI-NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGA-DINKKN-SDGE  110 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHH-HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCC-CCCCCC-CCcC
Confidence            34567666443  445899999999 788877     489999999864     67899999999999 999999 8999


Q ss_pred             hHHHHHHHhC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCCh---HHHHHHHHHhcc
Q 010590          322 TPLHIAAEMV---SPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNK---LRLCLELVQSAA  395 (506)
Q Consensus       322 tpLh~A~~~~---~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~Ll~~ga  395 (506)
                      ||||+|+..+   +.+++++|+++|||++.+|..|.||||+|+.                  .++   .+++++|++.|+
T Consensus       111 TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~------------------~~~~~~~~vv~~Ll~~ga  172 (489)
T PHA02798        111 TPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ------------------SNHHIDIEIIKLLLEKGV  172 (489)
T ss_pred             cHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHH------------------cCCcchHHHHHHHHHhCC
Confidence            9999999875   7899999999999999999999999999997                  444   899999999999


Q ss_pred             Ccccccc
Q 010590          396 LVLSREE  402 (506)
Q Consensus       396 ~~~~~~~  402 (506)
                      +++.++.
T Consensus       173 din~~~~  179 (489)
T PHA02798        173 DINTHNN  179 (489)
T ss_pred             CcccccC
Confidence            9998743

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.89  E-value=6.8e-23  Score=216.31  Aligned_cols=149  Identities=23%  Similarity=0.286  Sum_probs=139.6

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      .+|...+++.|+.||+++.+|||++.+++++|+|||.||||+||||++||+++++|+                    .+.
T Consensus        17 ~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~--------------------~~~   76 (571)
T KOG4441|consen   17 PSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKES--------------------KQK   76 (571)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccc--------------------cce
Confidence            789999999999999999999999999999999999999999999999999999998                    468


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANM  164 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~  164 (506)
                      +|+|.++++.+++.+++|+|||++.++.+.                       +.+|+.+|..++++.+...|.+.|...
T Consensus        77 ~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~n-----------------------Vq~ll~aA~~lQi~~v~~~C~~fL~~~  133 (571)
T KOG4441|consen   77 EINLEGVDPETLELLLDYAYTGKLEISEDN-----------------------VQELLEAASLLQIPEVVDACCEFLESQ  133 (571)
T ss_pred             EEEEecCCHHHHHHHHHHhhcceEEechHh-----------------------HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            999999999999999999999999998665                       789999999999999999999999844


Q ss_pred             HhhhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc
Q 010590          165 VEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       165 l~~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~  199 (506)
                         +..+||+.+..+|..+.+.+|....-.|+..+
T Consensus       134 ---l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~  165 (571)
T KOG4441|consen  134 ---LDPSNCLGIRRFAELHSCTELLEVADEYILQH  165 (571)
T ss_pred             ---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence               48999999999999999999999988787765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.88  E-value=3.5e-22  Score=200.25  Aligned_cols=141  Identities=16%  Similarity=0.045  Sum_probs=124.0

Q ss_pred             CCccccHHHHHHHh--cCCHHHHHHHHhcCCCCC---CChHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCC----CCCCC
Q 010590          252 LEDQKIRRMRRALD--SSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADV-NYPA----GPAGK  321 (506)
Q Consensus       252 ~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~d~---~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v-~~~~----~~~g~  321 (506)
                      .+..++|+||.|+.  .|+.++|++|+ .+|+|+   ++.||||+|+..++.++|++|+++|+ ++ +..+    +..|.
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga-~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKIECLNAYFRGICKKESSVVEFILNCGI-PDENDVKLDLYKIIQY  189 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC-cccccccchhhhhhcc
Confidence            46779999999999  99999999999 899988   46899999999999999999999998 43 3221    03488


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccc
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSRE  401 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~  401 (506)
                      ||+|.|+..++.+++++|+++|||+|.+|..|+||||+|+.                  .++.+++++|++.||+++.+ 
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~------------------~g~~eiVelLL~~GAdIN~~-  250 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIY------------------AGYIDLVSWLLENGANVNAV-  250 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCCCCc-
Confidence            99999999999999999999999999999999999999998                  78999999999999999987 


Q ss_pred             cCCCCCCCCCCccccCCCCCCc
Q 010590          402 EGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       402 ~~~~~~~~~~~~~~~tplh~a~  423 (506)
                                +..|.||||.|+
T Consensus       251 ----------d~~G~TpLh~Aa  262 (437)
T PHA02795        251 ----------MSNGYTCLDVAV  262 (437)
T ss_pred             ----------CCCCCCHHHHHH
Confidence                      445567777763

>PHA02790 Kelch-like protein; Provisional

Probab=99.87  E-value=3.9e-22  Score=208.40  Aligned_cols=139  Identities=14%  Similarity=0.181  Sum_probs=124.3

Q ss_pred             HHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEc--CC
Q 010590           13 DYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPV--NS   90 (506)
Q Consensus        13 ~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l--~~   90 (506)
                      ..+-.|+.++.||||++++ |++|+|||+||||+|||||+||+++|+|+.                     .+|.+  .+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~---------------------~~v~~~~~~   68 (480)
T PHA02790         11 KNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNK---------------------DPVTRVCLD   68 (480)
T ss_pred             hhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccc---------------------cceEEEecC
Confidence            3456788999999998876 679999999999999999999999999872                     23444  48


Q ss_pred             CCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhH
Q 010590           91 VGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASI  170 (506)
Q Consensus        91 i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~  170 (506)
                      +++++++.||+|+|||++.++.++                       +++++.+|..++++.++..|.++|.+.+   +.
T Consensus        69 v~~~~l~~lldy~YTg~l~it~~n-----------------------V~~ll~aA~~Lqi~~v~~~C~~fL~~~l---~~  122 (480)
T PHA02790         69 LDIHSLTSIVIYSYTGKVYIDSHN-----------------------VVNLLRASILTSVEFIIYTCINFILRDF---RK  122 (480)
T ss_pred             cCHHHHHHHHHhheeeeEEEeccc-----------------------HHHHHHHHHHhChHHHHHHHHHHHHhhC---Cc
Confidence            999999999999999999998775                       7899999999999999999999998555   89


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhHHHHhc
Q 010590          171 EDVMKVLIASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       171 ~~v~~~L~~a~~~~~~~L~~~cl~~i~~~  199 (506)
                      +||+.++.+|..+++.+|.+.+.+|+..+
T Consensus       123 ~NCl~i~~~A~~y~~~~L~~~a~~fi~~n  151 (480)
T PHA02790        123 EYCVECYMMGIEYGLSNLLCHTKDFIAKH  151 (480)
T ss_pred             chHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998866

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.87  E-value=1.7e-22  Score=191.77  Aligned_cols=150  Identities=29%  Similarity=0.454  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceE
Q 010590            7 LRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVI   86 (506)
Q Consensus         7 ~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i   86 (506)
                      .+..+-+.+.+|+-+.+++||+|+|++++|||||+|||+||.|||+|+.++|.|+                    ++..|
T Consensus        27 i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es--------------------~q~~i   86 (620)
T KOG4350|consen   27 ISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQES--------------------HQQLI   86 (620)
T ss_pred             hccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhh--------------------hhccc
Confidence            3455667889999999999999999999999999999999999999999999998                    57899


Q ss_pred             EcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 010590           87 PVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVE  166 (506)
Q Consensus        87 ~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~  166 (506)
                      +|++-..++|+.+|+|||||++++....                    .+...+.+..|++|++.+|.....++++.++ 
T Consensus        87 pLq~t~~eAF~~lLrYiYtg~~~l~~~~--------------------ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL-  145 (620)
T KOG4350|consen   87 PLQETNSEAFRALLRYIYTGKIDLAGVE--------------------EDILLDYLSLAHRYGFIQLETAISEYLKEIL-  145 (620)
T ss_pred             ccccccHHHHHHHHHHHhhcceecccch--------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999987544                    2557889999999999999999999999888 


Q ss_pred             hhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc
Q 010590          167 KASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       167 ~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~  199 (506)
                        ..+|++.++..|..+.+.+|...|+.|+..+
T Consensus       146 --~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn  176 (620)
T KOG4350|consen  146 --KNENVCMIFDAAYLYQLTDLTDYCMMFMDRN  176 (620)
T ss_pred             --cccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence              6789999999999999999999999999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=205.69  Aligned_cols=196  Identities=17%  Similarity=0.175  Sum_probs=137.2

Q ss_pred             cCCHHHHHHHHhcCCCCCC----ChHHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC------CH
Q 010590          266 SSDVELVKLMVMGEGLNLD----EALALHYAVEN--CSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV------SP  333 (506)
Q Consensus       266 ~g~~~~v~~Ll~~~~~d~~----g~t~Lh~A~~~--g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~------~~  333 (506)
                      ..+.++|++|| +.|+|+|    |.||||+++..  ++.++|++||++|+ |+|.++  .+.||||.|+..+      +.
T Consensus        13 ~~~~~~v~~LL-~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GA-dvn~~~--~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         13 TVDKNALEFLL-RTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGA-DVNYKG--YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cCcHHHHHHHH-HcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCC-CccCCC--CCCCcHHHHHhccCcchhhHH
Confidence            57899999999 7888875    88999766554  37899999999999 999886  5799999998754      57


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHH--------HHHHHHHcCCCC-CCcccC------------CChHHHHHHHHH
Q 010590          334 DMVAVLLDHHADPNVRTVDGVTPLDILRT--------LTSDFLFKGAVP-GLTHIE------------PNKLRLCLELVQ  392 (506)
Q Consensus       334 ~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~--------~~~~~l~~~~~~-~~~~~~------------~~~~~~~~~Ll~  392 (506)
                      +++++|+++|||+|.+|..|+||||+|+.        .++.++.+|+++ +.....            .++.+++++|++
T Consensus        89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~  168 (494)
T PHA02989         89 KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS  168 (494)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence            89999999999999999999999998862        445667788888 443221            246788999999


Q ss_pred             hccCccc-cccCCCCC--------------------------CCCCCccccCCCCCCccCccCCCCCCCCCccccccccc
Q 010590          393 SAALVLS-REEGILNE--------------------------PSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLN  445 (506)
Q Consensus       393 ~ga~~~~-~~~~~~~~--------------------------~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~  445 (506)
                      +|++++. .+..|.++                          ++..+..+.||||.+.....     ......+.+..+.
T Consensus       169 ~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~-----~~~~~~~~il~~l  243 (494)
T PHA02989        169 FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK-----ILSKKEFKVLNFI  243 (494)
T ss_pred             cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch-----hhcccchHHHHHH
Confidence            9999987 33333221                          11122223333332210000     0000111111222


Q ss_pred             cCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          446 LDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       446 ~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      .   .++++|.+|..|+||||+||+.|+
T Consensus       244 ~---~~advn~~d~~G~TpL~~Aa~~~~  268 (494)
T PHA02989        244 L---KYIKINKKDKKGFNPLLISAKVDN  268 (494)
T ss_pred             H---hCCCCCCCCCCCCCHHHHHHHhcC
Confidence            2   237899999999999999999874

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3.9e-21  Score=172.18  Aligned_cols=135  Identities=18%  Similarity=0.193  Sum_probs=117.6

Q ss_pred             cCCccccHHHHHHHhcCCH----HHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHH---HHHHHHcCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDV----ELVKLMVMGEGL-----NLDEALALHYAVENCSREV---VKALLELGAADVNYPAGP  318 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~---v~~Ll~~g~~~v~~~~~~  318 (506)
                      ..+..+.++||.||+.|+.    +++++|+ +.+.     |.+|+||||+|+..|+.+.   +++|++.|+ ++|.++..
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga-din~~d~~   92 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFIS-GDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA-DINARELG   92 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHh-hcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC-CCCCCCCC
Confidence            3456788999999999998    5555666 4554     4469999999999988654   899999999 99999734


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCc
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLD-HHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALV  397 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~  397 (506)
                      .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.                  .++.+++.+|+++|+++
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~------------------~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYK------------------MRDRRMMEILRANGAVC  154 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCC
Confidence            89999999999999999999995 799999999999999999997                  68889999999999999


Q ss_pred             cccccCCC
Q 010590          398 LSREEGIL  405 (506)
Q Consensus       398 ~~~~~~~~  405 (506)
                      +.++..|.
T Consensus       155 ~~~~~~~~  162 (166)
T PHA02743        155 DDPLSIGL  162 (166)
T ss_pred             CCcccCCc
Confidence            99877664

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=4.7e-22  Score=192.40  Aligned_cols=140  Identities=24%  Similarity=0.259  Sum_probs=129.3

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCCC-----ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLD-----EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~-----g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ...-.|.+||..|+..||.++|+.|+ ..|+++|     ..|||-.||..|+.++||+|+++|+ |+++.| ..|.|.||
T Consensus        79 ge~IegappLWaAsaAGHl~vVk~L~-~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~ga-d~~Ian-rhGhTcLm  155 (615)
T KOG0508|consen   79 GETIEGAPPLWAASAAGHLEVVKLLL-RRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGA-DPEIAN-RHGHTCLM  155 (615)
T ss_pred             CcccCCCchhhHHhccCcHHHHHHHH-HhcCccccccccCCccHHHHHhcchhHHHHHHHHcCC-CCcccc-cCCCeeEE
Confidence            34568999999999999999999999 7778886     3599999999999999999999999 999999 99999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCC
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGIL  405 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~  405 (506)
                      +||..|+.+++++|++.|||+|.++..|+|+||.+++                  .++++++++|+.+|+.++.      
T Consensus       156 Ia~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caE------------------sG~vdivq~Ll~~ga~i~~------  211 (615)
T KOG0508|consen  156 IACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAE------------------SGSVDIVQLLLKHGAKIDV------  211 (615)
T ss_pred             eeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhh------------------cccHHHHHHHHhCCceeee------
Confidence            9999999999999999999999999999999999998                  8999999999999998875      


Q ss_pred             CCCCCCCccccCCCCCCc
Q 010590          406 NEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~  423 (506)
                            +..|.|||..|.
T Consensus       212 ------d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  212 ------DGHGMTPLLLAA  223 (615)
T ss_pred             ------cCCCCchHHHHh
Confidence                  455888888873

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.86  E-value=2.5e-22  Score=218.15  Aligned_cols=207  Identities=22%  Similarity=0.219  Sum_probs=133.7

Q ss_pred             cccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcC-CHHHHHHHHhcCCCCC-----CChHHHHHHHHc
Q 010590          222 RHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSS-DVELVKLMVMGEGLNL-----DEALALHYAVEN  295 (506)
Q Consensus       222 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~  295 (506)
                      .+.||+.........................+..|.||+|+|+..| ..++...++ ..|.++     .|.||||.|+..
T Consensus       406 ~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~-~~g~~~n~~s~~G~T~Lhlaaq~  484 (1143)
T KOG4177|consen  406 NGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLL-QYGADPNAVSKQGFTPLHLAAQE  484 (1143)
T ss_pred             CCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHh-hcCCCcchhccccCcchhhhhcc
Confidence            3455555444444433333333334444455566666666666666 555555555 455544     366666666666


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCC
Q 010590          296 CSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPG  375 (506)
Q Consensus       296 g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~  375 (506)
                      |+.++++.|++.++ ..+... +.|-|+||.|...+...+++.++++|++++.++..|.||||.||.             
T Consensus       485 Gh~~~~~llle~~~-~~~~~~-~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~-------------  549 (1143)
T KOG4177|consen  485 GHTEVVQLLLEGGA-NDNLDA-KKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVH-------------  549 (1143)
T ss_pred             CCchHHHHhhhcCC-ccCccc-hhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHh-------------
Confidence            66666666666666 555555 566666666666666666666666677777777777777777766             


Q ss_pred             CcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeec
Q 010590          376 LTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLN  455 (506)
Q Consensus       376 ~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln  455 (506)
                           .++.++|++||++|||++++           +..|+||||.||...           ......++.  ..++++|
T Consensus       550 -----~g~v~~VkfLLe~gAdv~ak-----------~~~G~TPLH~Aa~~G-----------~~~i~~LLl--k~GA~vn  600 (1143)
T KOG4177|consen  550 -----YGNVDLVKFLLEHGADVNAK-----------DKLGYTPLHQAAQQG-----------HNDIAELLL--KHGASVN  600 (1143)
T ss_pred             -----cCCchHHHHhhhCCcccccc-----------CCCCCChhhHHHHcC-----------hHHHHHHHH--HcCCCCC
Confidence                 78888888888888888888           456778888885322           122223333  3457888


Q ss_pred             cCCCCCCCcchhhhhcCC
Q 010590          456 LGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       456 ~~D~~G~T~LH~Aa~~gs  473 (506)
                      ..|.+|.||||+|+..|.
T Consensus       601 a~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  601 AADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             cccccCcchhHHHHHhcc
Confidence            888888888888888883

>PHA02792 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=203.30  Aligned_cols=110  Identities=25%  Similarity=0.294  Sum_probs=95.7

Q ss_pred             cccCCccccHHHHH-HHhcCCHHHHHHHHhcCCCCCC-----ChHHHHHHHH-cCCHHHHHHHHHcCCCCCC--------
Q 010590          249 AADLEDQKIRRMRR-ALDSSDVELVKLMVMGEGLNLD-----EALALHYAVE-NCSREVVKALLELGAADVN--------  313 (506)
Q Consensus       249 ~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~d~~-----g~t~Lh~A~~-~g~~~~v~~Ll~~g~~~v~--------  313 (506)
                      ....+.+|.+++|+ |+..|++|+|++|+ ++|+|++     |.||||+|+. .++.+++++||+.|| |++        
T Consensus        64 ~~~~n~~~~~~~~~~~s~n~~lElvk~LI-~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Ga-d~~~~~~~g~~  141 (631)
T PHA02792         64 VDYKNINDFDIFEYLCSDNIDIELLKLLI-SKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGI-PTCSNIQYGYK  141 (631)
T ss_pred             CCcCccCCccHHHHHHHhcccHHHHHHHH-HcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCC-CcccccccCcc
Confidence            33567788889976 66788999999999 7898883     6899999966 699999999999998 632        


Q ss_pred             ----------------------------CCCCCCCChHHHHHHHhC-------CHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 010590          314 ----------------------------YPAGPAGKTPLHIAAEMV-------SPDMVAVLLDHHADPNVRTVDGVTPLD  358 (506)
Q Consensus       314 ----------------------------~~~~~~g~tpLh~A~~~~-------~~~~v~~Ll~~ga~~~~~d~~g~tpLh  358 (506)
                                                  ..| ..|.||||+|+..+       +.+++++|+++|++++.+|..|.||||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~  220 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDDYDYDYTTDYDD-RMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY  220 (631)
T ss_pred             hhhhhcccccccchhhhccccccccccccCC-CCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence                                        333 67999999999999       899999999999999999999999999


Q ss_pred             HHH
Q 010590          359 ILR  361 (506)
Q Consensus       359 ~A~  361 (506)
                      +|+
T Consensus       221 ~~~  223 (631)
T PHA02792        221 YYV  223 (631)
T ss_pred             HHH
Confidence            998

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.85  E-value=2.5e-21  Score=215.21  Aligned_cols=172  Identities=13%  Similarity=0.091  Sum_probs=144.4

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      ..+.++||.||..|+.++++.|+ +.|+|+     +|+||||+|+..|+.+++++|+++|+ ++|.+| .+|+||||+|+
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll-~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-din~~d-~~G~TpL~~A~  599 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELL-KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC-NVHIRD-ANGNTALWNAI  599 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC-CCCCcC-CCCCCHHHHHH
Confidence            35678999999999999999999 677655     48999999999999999999999999 999998 89999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCC
Q 010590          329 EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEP  408 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~  408 (506)
                      ..|+.+++++|++.++..+.  ..|.+|||+|+.                  .++.++++.|+++|+|+|.+        
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~------------------~g~~~~v~~Ll~~Gadin~~--------  651 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDP--HAAGDLLCTAAK------------------RNDLTAMKELLKQGLNVDSE--------  651 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCc--ccCchHHHHHHH------------------hCCHHHHHHHHHCCCCCCCC--------
Confidence            99999999999988876553  457799999998                  78999999999999999988        


Q ss_pred             CCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCC-CCcchhhhhcC
Q 010590          409 SSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTG-NSAHHHHHQMG  472 (506)
Q Consensus       409 ~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G-~T~LH~Aa~~g  472 (506)
                         +..|.||||+|+..           +...++.+++  ..++++|.+|..| +||++++....
T Consensus       652 ---d~~G~TpLh~A~~~-----------g~~~iv~~Ll--~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        652 ---DHQGATALQVAMAE-----------DHVDMVRLLI--MNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             ---CCCCCCHHHHHHHC-----------CcHHHHHHHH--HcCCCCCCCCCCCCCCHHHHHHHHH
Confidence               55677999998432           2333445555  3558899999998 99999986643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=3e-21  Score=202.39  Aligned_cols=186  Identities=11%  Similarity=0.078  Sum_probs=140.4

Q ss_pred             cCCccccHHHHHHHhcC---CHHHHHHHHhcCCCCC-----CChHHHHHHHHcC--CHHHHHHHHHcCC-CCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSS---DVELVKLMVMGEGLNL-----DEALALHYAVENC--SREVVKALLELGA-ADVNYPAGPA  319 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g--~~~~v~~Ll~~g~-~~v~~~~~~~  319 (506)
                      ..|..|.||||+|+..|   +.++|++|| ++|+|+     +|+||||+|+..+  +.++|++|++.|+ .+++..+ ..
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLL-s~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~-~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLL-SRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTS-NI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHH-hCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccc-cc
Confidence            45788999999999997   599999999 888876     4999999999977  7999999999965 0457776 78


Q ss_pred             CChHHHHHHH--hCCHHHHHHHHH-CCCCCCCCCC-----CCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHH
Q 010590          320 GKTPLHIAAE--MVSPDMVAVLLD-HHADPNVRTV-----DGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELV  391 (506)
Q Consensus       320 g~tpLh~A~~--~~~~~~v~~Ll~-~ga~~~~~d~-----~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll  391 (506)
                      +++|||.++.  .++.+++++|+. .|+|++....     .|.+|+++|+.                  .++.+++++|+
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~------------------~~~~eIvklLi  175 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTP------------------NPRPEVLLWLL  175 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcC------------------CCchHHHHHHH
Confidence            9999999988  899999999997 6789887643     79999999987                  78999999999


Q ss_pred             HhccCccccccCCCCCCCCCCcccc-CCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchh
Q 010590          392 QSAALVLSREEGILNEPSSSTATVI-YPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHH  467 (506)
Q Consensus       392 ~~ga~~~~~~~~~~~~~~~~~~~~~-tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~  467 (506)
                      +.||+++-..-++    ...+..+. |.||+.-.+..     .+.+.....+.+++  +.+++||.+|.+|.||||+
T Consensus       176 ~~g~~v~g~~~~~----~~~~~~~c~~~l~~~il~~~-----~~~~n~~eiv~lLI--s~GadIN~kd~~G~TpLh~  241 (672)
T PHA02730        176 KSECYSTGYVFRS----CMYDSDRCKNSLHYYILSHR-----ESESLSKDVIKCLI--DNNVSIHGRDEGGSLPIQY  241 (672)
T ss_pred             HcCCccccccccc----ccccCCccchhHHHHHHhhh-----hhhccCHHHHHHHH--HCCCCCCCCCCCCCCHHHH
Confidence            9999995221111    11123343 44553322111     12222333344444  4458999999999999996

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.9e-21  Score=171.24  Aligned_cols=130  Identities=18%  Similarity=0.146  Sum_probs=109.3

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHh---cC------CCCCCChHHHHHHHHcCCH---HHHHHHHHcCCCCCCCCCC
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVM---GE------GLNLDEALALHYAVENCSR---EVVKALLELGAADVNYPAG  317 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~------~~d~~g~t~Lh~A~~~g~~---~~v~~Ll~~g~~~v~~~~~  317 (506)
                      ...|..|.||||+||..|+...+.....   ..      ..|.+|+||||+|+..|+.   +++++|++.|+ ++|.++.
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga-din~~~~   89 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA-DINGKER   89 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC-CccccCC
Confidence            3457889999999999998432221110   11      1255799999999999987   46899999999 9999973


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          318 PAGKTPLHIAAEMVSPDMVAVLLD-HHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       318 ~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      ..|+||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+.                  .++.+++.+|++.|++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~------------------~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE------------------RHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCC
Confidence            489999999999999999999998 499999999999999999997                  6889999999999998


Q ss_pred             cc
Q 010590          397 VL  398 (506)
Q Consensus       397 ~~  398 (506)
                      ++
T Consensus       152 ~~  153 (154)
T PHA02736        152 CK  153 (154)
T ss_pred             CC
Confidence            75

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=2.1e-20  Score=168.21  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=113.3

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHh-----cCCC-----CCCChHHHHHHHHcCC----HHHHHHHHHcCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVM-----GEGL-----NLDEALALHYAVENCS----REVVKALLELGAADVNYPA  316 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~-----d~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~v~~~~  316 (506)
                      ..+..|.||||+|+..|+.++++.|+.     ..|+     |..|+||||+|+..|+    .+++++|+++|+ ++|.++
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga-din~~~   94 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA-DINAQE   94 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC-CCCCCC
Confidence            457889999999999999999999852     1233     3469999999999999    589999999999 999987


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhcc
Q 010590          317 GPAGKTPLHIAAEMVSPDMVAVLLD-HHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA  395 (506)
Q Consensus       317 ~~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga  395 (506)
                      ...|+||||+|+..++.+++++|+. .|++++.+|.+|+||||+|+.                  .+..+++..|++.++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~------------------~~~~~iv~~L~~~~~  156 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID------------------NEDVAMMQILREIVA  156 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH------------------CCCHHHHHHHHHHHH
Confidence            2389999999999999999999998 599999999999999999997                  678899999999886


Q ss_pred             Ccc
Q 010590          396 LVL  398 (506)
Q Consensus       396 ~~~  398 (506)
                      ...
T Consensus       157 ~~~  159 (169)
T PHA02741        157 TSR  159 (169)
T ss_pred             Hhc
Confidence            643

>PHA03098 kelch-like protein; Provisional

Probab=99.84  E-value=1.2e-20  Score=201.00  Aligned_cols=129  Identities=20%  Similarity=0.396  Sum_probs=119.0

Q ss_pred             CCCceeEEEEE--CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHH
Q 010590           21 GQAFSDVTFSV--EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLL   98 (506)
Q Consensus        21 ~~~~~Dv~~~v--~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~   98 (506)
                      ++.||||+|++  +|++|+|||.|||++|+||++||+++|++                       .+|+|++ ++++|+.
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~-----------------------~~i~l~~-~~~~~~~   61 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKE-----------------------NEINLNI-DYDSFNE   61 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCC-----------------------ceEEecC-CHHHHHH
Confidence            89999999998  99999999999999999999999998862                       5789999 9999999


Q ss_pred             HhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 010590           99 LLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLI  178 (506)
Q Consensus        99 ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~~L~  178 (506)
                      +|+|+|||++.++.+.                       +.+|+.+|++|+++.++.+|++.+...+   +.+||+.++.
T Consensus        62 ~l~y~Ytg~~~i~~~~-----------------------~~~ll~~A~~l~~~~l~~~C~~~l~~~l---~~~nc~~~~~  115 (534)
T PHA03098         62 VIKYIYTGKINITSNN-----------------------VKDILSIANYLIIDFLINLCINYIIKII---DDNNCIDIYR  115 (534)
T ss_pred             HHHHhcCCceEEcHHH-----------------------HHHHHHHHHHhCcHHHHHHHHHHHHHhC---CHhHHHHHHH
Confidence            9999999999887443                       7899999999999999999999998554   7899999999


Q ss_pred             HhhhhhhHHHHHHHhHHHHhc
Q 010590          179 ASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       179 ~a~~~~~~~L~~~cl~~i~~~  199 (506)
                      .|..+++..|.+.|.+|+..+
T Consensus       116 ~a~~~~~~~L~~~~~~~i~~n  136 (534)
T PHA03098        116 FSFFYGCKKLYSAAYNYIRNN  136 (534)
T ss_pred             HHHHcCcHHHHHHHHHHHHHH
Confidence            999999999999999999866

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=3.8e-21  Score=209.07  Aligned_cols=217  Identities=21%  Similarity=0.188  Sum_probs=168.3

Q ss_pred             HHHhhcccchhHHHhhcc-cccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHH
Q 010590          217 KIEDLRHKSSLARRSLIS-HHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALH  290 (506)
Q Consensus       217 ~l~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh  290 (506)
                      ...+..++||+....... ..................-..|.||||.|+..|+.+++..|+ +.+++.     .|-|+||
T Consensus       434 ~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~lll-e~~~~~~~~~~~~l~~lh  512 (1143)
T KOG4177|consen  434 NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLL-EGGANDNLDAKKGLTPLH  512 (1143)
T ss_pred             hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhh-hcCCccCccchhccchhh
Confidence            344455688887776655 222223333444455566789999999999999999999999 555322     4789999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHc
Q 010590          291 YAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFK  370 (506)
Q Consensus       291 ~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~  370 (506)
                      .|...+...+++.++++|+ +++.++ ..|.||||+||..|+.++|++||++|||++.+|+.|+||||.||.        
T Consensus       513 la~~~~~v~~~~~l~~~ga-~v~~~~-~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~--------  582 (1143)
T KOG4177|consen  513 LAADEDTVKVAKILLEHGA-NVDLRT-GRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQ--------  582 (1143)
T ss_pred             hhhhhhhHHHHHHHhhcCC-ceehhc-ccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHH--------
Confidence            9999999999999999999 999999 899999999999999999999999999999999999999999998        


Q ss_pred             CCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCC-
Q 010590          371 GAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSS-  449 (506)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  449 (506)
                                .++.+++.+|+++||++|..           +..|.||||.|....           ....+.+..+.. 
T Consensus       583 ----------~G~~~i~~LLlk~GA~vna~-----------d~~g~TpL~iA~~lg-----------~~~~~k~l~~~~~  630 (1143)
T KOG4177|consen  583 ----------QGHNDIAELLLKHGASVNAA-----------DLDGFTPLHIAVRLG-----------YLSVVKLLKVVTA  630 (1143)
T ss_pred             ----------cChHHHHHHHHHcCCCCCcc-----------cccCcchhHHHHHhc-----------ccchhhHHHhccC
Confidence                      67999999999999999998           667779999873211           112221111100 


Q ss_pred             --cceeeccCCCCCCCcchhhhhcCCCCC
Q 010590          450 --RLVYLNLGAGTGNSAHHHHHQMGSSRM  476 (506)
Q Consensus       450 --~~~~ln~~D~~G~T~LH~Aa~~gs~~~  476 (506)
                        ...+.......|+||+-.+...-+.+.
T Consensus       631 ~~~~~~~~~e~~~g~~p~~v~e~~~~~~~  659 (1143)
T KOG4177|consen  631 TPAATDPVKENRKGAVPEDVAEELDTDRQ  659 (1143)
T ss_pred             ccccccchhhhhcccChhhHHHHhhhhhh
Confidence              112356677889999988876654433

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1.1e-20  Score=177.64  Aligned_cols=125  Identities=23%  Similarity=0.276  Sum_probs=110.9

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCC
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVEN-----CSREVVKALLELGAADVNYPAGP  318 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~~~v~~~~~~  318 (506)
                      ....|.+|+|+||||+.++++++|+.||+..-+|+     -|+||+++|+..     .+.++|..|...|  |||.+-..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg--nVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG--DVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc--Ccchhhhh
Confidence            34568999999999999999999999994333344     399999999864     4678999999988  68888778


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHh
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQS  393 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~  393 (506)
                      .|+|+|++|+.+|+.++|+.||.-|||||++|.+|-|+|++||+                  .++.+++++||..
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~E------------------HGhkEivklLLA~  395 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAE------------------HGHKEIVKLLLAV  395 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhh------------------hChHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998                  7999999999874

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=7.6e-21  Score=167.03  Aligned_cols=137  Identities=22%  Similarity=0.251  Sum_probs=114.8

Q ss_pred             cccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCCC-----ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          247 AAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLD-----EALALHYAVENCSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       247 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~-----g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      ......|+.|.|||.||+.+|++.+|++|| +.|+|++     -.|+|++|+..|..++|++||+++. |||..| .+|-
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~v-dVNvyD-wNGg  227 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDALGKYRESALSLATRGGYTDIVELLLTREV-DVNVYD-WNGG  227 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCC-Ccceec-cCCC
Confidence            344566889999999999999999999999 7888774     3589999999999999999999999 999998 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccc
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSRE  401 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~  401 (506)
                      |||-+|++.||.+|++.||+.||+++..|..|++++..|+..                   ..++++..+++-++.+.+|
T Consensus       228 TpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVal-------------------Gyr~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVAL-------------------GYRIVQQVIEKHALKLCQD  288 (296)
T ss_pred             ceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHh-------------------hhHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999862                   2347788888888777774


Q ss_pred             cCCC
Q 010590          402 EGIL  405 (506)
Q Consensus       402 ~~~~  405 (506)
                      .+.+
T Consensus       289 ~~~~  292 (296)
T KOG0502|consen  289 SEKR  292 (296)
T ss_pred             ccCC
Confidence            4333

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=1.8e-21  Score=171.02  Aligned_cols=174  Identities=18%  Similarity=0.156  Sum_probs=143.2

Q ss_pred             cccccCCccccHHHHHHHhcCCHHHHHHHHhcCC---CCCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          247 AAAADLEDQKIRRMRRALDSSDVELVKLMVMGEG---LNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       247 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~---~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      ......+--+++|+.+++..-+.+++..+. ++.   +|..|.|||.||+..|++++|++||+.|+ |++..- +...|+
T Consensus       120 ~rgnevs~~p~s~~slsVhql~L~~~~~~~-~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GA-dp~~lg-k~resA  196 (296)
T KOG0502|consen  120 ARGNEVSLMPWSPLSLSVHQLHLDVVDLLV-NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGA-DPDALG-KYRESA  196 (296)
T ss_pred             ccCCccccccCChhhHHHHHHHHHHHHHHh-hccccCccccCchHhHHHHhcCchHHHHHHHHcCC-Chhhhh-hhhhhh
Confidence            334445667899999999999999998887 443   45679999999999999999999999999 999997 899999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccC
Q 010590          324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG  403 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~  403 (506)
                      |.+|++.|..++|++||.++.|+|.-|.+|-|||-+|++                  .++.++|+.|++.|||++..++ 
T Consensus       197 LsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvr------------------gnhvkcve~Ll~sGAd~t~e~d-  257 (296)
T KOG0502|consen  197 LSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVR------------------GNHVKCVESLLNSGADVTQEDD-  257 (296)
T ss_pred             HhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeec------------------CChHHHHHHHHhcCCCcccccc-
Confidence            999999999999999999999999999999999999998                  8999999999999999999855 


Q ss_pred             CCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcch
Q 010590          404 ILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHH  466 (506)
Q Consensus       404 ~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH  466 (506)
                                .|.+++-+|...+.           . .++--+  .+.++.+.||+.-.||||
T Consensus       258 ----------sGy~~mdlAValGy-----------r-~Vqqvi--e~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  258 ----------SGYWIMDLAVALGY-----------R-IVQQVI--EKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             ----------cCCcHHHHHHHhhh-----------H-HHHHHH--HHHHHHHhhcccCCCCCC
Confidence                      45566655521110           0 111111  344678888988888887

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=6.9e-21  Score=210.38  Aligned_cols=192  Identities=16%  Similarity=0.118  Sum_probs=135.9

Q ss_pred             cCCccccHHHH-HHHhcCCHHHHHHHHhcCCC-CCCChHHHHHHHHcC---CHHHHHHHHHcCCCC------CCCC---C
Q 010590          251 DLEDQKIRRMR-RALDSSDVELVKLMVMGEGL-NLDEALALHYAVENC---SREVVKALLELGAAD------VNYP---A  316 (506)
Q Consensus       251 ~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~-d~~g~t~Lh~A~~~g---~~~~v~~Ll~~g~~~------v~~~---~  316 (506)
                      ..|..|.|||| .|+.+++.+++++|+ ..|. +..|.||||+|+..+   ...++++++..+. +      ++..   +
T Consensus        47 ~~d~~G~t~Lh~~A~~~~~~eiv~lLl-~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~-~~~~~~~~~~~~~~~  124 (743)
T TIGR00870        47 CPDRLGRSALFVAAIENENLELTELLL-NLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFR-KSGPLELANDQYTSE  124 (743)
T ss_pred             CcCccchhHHHHHHHhcChHHHHHHHH-hCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhccc-ccCchhhhccccccc
Confidence            45788999999 889999999999999 5664 667999999999732   2234445555443 2      1111   1


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHHHHHHHHHcCCCCCCcccCCC
Q 010590          317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRT--------------VDGVTPLDILRTLTSDFLFKGAVPGLTHIEPN  382 (506)
Q Consensus       317 ~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d--------------~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~  382 (506)
                      ...|.||||+|+..|+.++|++|+++||+++.++              ..|.||||+|+.                  .+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~------------------~~  186 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAAC------------------LG  186 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHH------------------hC
Confidence            1469999999999999999999999999999764              369999999997                  68


Q ss_pred             hHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccc---cC--CCcceeeccC
Q 010590          383 KLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLN---LD--SSRLVYLNLG  457 (506)
Q Consensus       383 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~ln~~  457 (506)
                      +.+++++|++.|+|++.+           +..|+||||+|+...+.... +... .....++.   ++  .......+..
T Consensus       187 ~~~iv~lLl~~gadin~~-----------d~~g~T~Lh~A~~~~~~~~~-~~~l-~~~~~~~l~~ll~~~~~~~el~~i~  253 (743)
T TIGR00870       187 SPSIVALLSEDPADILTA-----------DSLGNTLLHLLVMENEFKAE-YEEL-SCQMYNFALSLLDKLRDSKELEVIL  253 (743)
T ss_pred             CHHHHHHHhcCCcchhhH-----------hhhhhHHHHHHHhhhhhhHH-HHHH-HHHHHHHHHHHHhccCChHhhhhhc
Confidence            899999999999999988           55777999998543310000 0000 00000000   00  0011123778


Q ss_pred             CCCCCCcchhhhhcCCCC
Q 010590          458 AGTGNSAHHHHHQMGSSR  475 (506)
Q Consensus       458 D~~G~T~LH~Aa~~gs~~  475 (506)
                      |.+|.||||+|+..|+..
T Consensus       254 N~~g~TPL~~A~~~g~~~  271 (743)
T TIGR00870       254 NHQGLTPLKLAAKEGRIV  271 (743)
T ss_pred             CCCCCCchhhhhhcCCcc
Confidence            999999999999999543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.82  E-value=4.8e-20  Score=188.02  Aligned_cols=188  Identities=23%  Similarity=0.216  Sum_probs=147.8

Q ss_pred             cccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          247 AAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       247 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      ......|..|.|+||.||.+|+.+++++|+ ++.+     +..|.+|||+|++.|+.++|++||.++. .+|..+ .+|.
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~lll-e~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d-~~na~~-~e~~  116 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLL-DYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTD-ILNAVN-IENE  116 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHh-cchhhhhhhhccCcceEEehhhcCcchHHHHHHhccc-CCCccc-ccCc
Confidence            344456779999999999999999999999 4433     4579999999999999999999999998 999998 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccc
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSRE  401 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~  401 (506)
                      ||||.|+++||.+++.+|+.+|+|+-++|+.+.|+|.+|++                  -+...+++.|++..-.+-.-+
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~q------------------fgr~~Vvq~ll~~~~~~~~~~  178 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASR------------------FGRAEVVQMLLQKKFPVQSSL  178 (854)
T ss_pred             CccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHH------------------hhhhHHHHHHhhhccchhhcc
Confidence            99999999999999999999999999999999999999998                  577788888888843333322


Q ss_pred             cCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          402 EGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       402 ~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      .   ..-...+-.+.+|||+|+.++.           +..+..++  ..++++|.+..+| |+||-||-.|
T Consensus       179 ~---~~~~~~~~~~~~plHlaakngh-----------~~~~~~ll--~ag~din~~t~~g-talheaalcg  232 (854)
T KOG0507|consen  179 R---VGDIKRPFPAIYPLHLAAKNGH-----------VECMQALL--EAGFDINYTTEDG-TALHEAALCG  232 (854)
T ss_pred             c---CCCCCCCCCCcCCcchhhhcch-----------HHHHHHHH--hcCCCcccccccc-hhhhhHhhcC
Confidence            2   2233456789999999954332           22222222  2346666666665 6777777666

>PHA02795 ankyrin-like protein; Provisional

Probab=99.81  E-value=1.3e-19  Score=181.69  Aligned_cols=136  Identities=18%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----------DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      .+.||||.|+..|+.+++++|+ .+|++.           .|.||+|.|+..++.+++++|+++|+ ++|.+| ..|+||
T Consensus       148 ~~~t~lh~A~~~~~~eIVk~Ll-s~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA-DIN~kD-~~G~Tp  224 (437)
T PHA02795        148 ECLNAYFRGICKKESSVVEFIL-NCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE-DINQLD-AGGRTL  224 (437)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHH-hcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC-CcCcCC-CCCCCH
Confidence            4589999999999999999999 667522           26689999999999999999999999 999999 899999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccC
Q 010590          324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG  403 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~  403 (506)
                      ||+|+..|+.+++++|+++||+++.+|..|+||||+|+..+..          .....++.+++++|+++|++++.....
T Consensus       225 Lh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~----------~~~~~~~~eIvelLL~~gadI~~~~~~  294 (437)
T PHA02795        225 LYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSV----------IARRETHLKILEILLREPLSIDCIKLA  294 (437)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCc----------ccccccHHHHHHHHHhCCCCCCchhHH
Confidence            9999999999999999999999999999999999999962100          000023578899999999988876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.81  E-value=4.1e-19  Score=197.60  Aligned_cols=133  Identities=14%  Similarity=0.115  Sum_probs=121.4

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      ....|..|.||||+|+..|+.+++++|+ ++|+|+     +|+||||+|+..|+.+++++|++.++ ..+.   ..|.+|
T Consensus       551 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~-~~~~---~~~~~~  625 (823)
T PLN03192        551 PDIGDSKGRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS-ISDP---HAAGDL  625 (823)
T ss_pred             CCCCCCCCCCHHHHHHHcChHHHHHHHH-hcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCc-ccCc---ccCchH
Confidence            3456889999999999999999999999 677755     59999999999999999999999887 5542   467899


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccC
Q 010590          324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG  403 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~  403 (506)
                      ||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+.                  .++.+++++|+++||+++..|..
T Consensus       626 L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~------------------~g~~~iv~~Ll~~GAdv~~~~~~  687 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA------------------EDHVDMVRLLIMNGADVDKANTD  687 (823)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------------CCcHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999999999999999999999998                  78999999999999999999877


Q ss_pred             C
Q 010590          404 I  404 (506)
Q Consensus       404 ~  404 (506)
                      |
T Consensus       688 g  688 (823)
T PLN03192        688 D  688 (823)
T ss_pred             C
Confidence            6

>PHA02730 ankyrin-like protein; Provisional

Probab=99.81  E-value=9.6e-20  Score=191.16  Aligned_cols=149  Identities=13%  Similarity=0.017  Sum_probs=110.3

Q ss_pred             HHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCC----HHHHHHHHHCCC--CCCCCCCCCCcHHH
Q 010590          288 ALHYAVENC---SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVS----PDMVAVLLDHHA--DPNVRTVDGVTPLD  358 (506)
Q Consensus       288 ~Lh~A~~~g---~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~----~~~v~~Ll~~ga--~~~~~d~~g~tpLh  358 (506)
                      .||.-...+   +.+++++|+++|| ++|..  ..|+||||+|+..++    .+++++|+++|+  ++|.+|..|.||||
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GA-dIN~k--~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGA-TMDKT--TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCC-CCCcC--CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHh
Confidence            455555544   6899999999999 99974  589999999998875    899999999998  69999999999999


Q ss_pred             HH--HHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCC
Q 010590          359 IL--RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGS  436 (506)
Q Consensus       359 ~A--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~  436 (506)
                      .+  +....        ......+....+++.+|+.+|||++.+           +..|.||||+|+..           
T Consensus       423 ~~i~a~~~n--------~~~~~~e~~~~~ivk~LIs~GADINak-----------D~~G~TPLh~Aa~~-----------  472 (672)
T PHA02730        423 GLILSRFNN--------CGYHCYETILIDVFDILSKYMDDIDMI-----------DNENKTLLYYAVDV-----------  472 (672)
T ss_pred             HHHHHHhcc--------ccccccchhHHHHHHHHHhcccchhcc-----------CCCCCCHHHHHHHh-----------
Confidence            53  21000        000000011346799999999999999           55677999998421           


Q ss_pred             ccccccccccCCCcceeeccCCC-CCCCcchhhhhc
Q 010590          437 ATINNNSLNLDSSRLVYLNLGAG-TGNSAHHHHHQM  471 (506)
Q Consensus       437 ~~~~~~~~~~~~~~~~~ln~~D~-~G~T~LH~Aa~~  471 (506)
                      .....+.+++  ..++++|.+|. .|+||||+|+..
T Consensus       473 ~~~eive~LI--~~GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        473 NNIQFARRLL--EYGASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             CCHHHHHHHH--HCCCCCCCCCCcCCcCHHHHHHHh
Confidence            1222344444  44589999997 599999999974

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=3.6e-19  Score=160.12  Aligned_cols=111  Identities=20%  Similarity=0.185  Sum_probs=95.3

Q ss_pred             CHHHHHHHHhcCCCCCCChHHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCChHHHHHHHhCC----HHHHH
Q 010590          268 DVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLE------LGAADVNYPAGPAGKTPLHIAAEMVS----PDMVA  337 (506)
Q Consensus       268 ~~~~v~~Ll~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~------~g~~~v~~~~~~~g~tpLh~A~~~~~----~~~v~  337 (506)
                      ...++..++.  ..|.+|.||||+|+..|+.++++.|+.      .|+ +++.+| ..|+||||+|+..|+    .++++
T Consensus         6 ~~~~~~~~~~--~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga-~in~~d-~~g~T~Lh~A~~~g~~~~~~~ii~   81 (169)
T PHA02741          6 FMTCLEEMIA--EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAA-ALNATD-DAGQMCIHIAAEKHEAQLAAEIID   81 (169)
T ss_pred             HHHHHHHHhh--ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhh-hhhccC-CCCCcHHHHHHHcCChHHHHHHHH
Confidence            3456666662  345679999999999999999999864      367 899999 899999999999999    58999


Q ss_pred             HHHHCCCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH-hccCcccc
Q 010590          338 VLLDHHADPNVRTV-DGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ-SAALVLSR  400 (506)
Q Consensus       338 ~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~  400 (506)
                      +|+++|+++|.+|. +|+||||+|+.                  .++.+++++|+. .|++++.+
T Consensus        82 ~Ll~~gadin~~~~~~g~TpLh~A~~------------------~~~~~iv~~Ll~~~g~~~~~~  128 (169)
T PHA02741         82 HLIELGADINAQEMLEGDTALHLAAH------------------RRDHDLAEWLCCQPGIDLHFC  128 (169)
T ss_pred             HHHHcCCCCCCCCcCCCCCHHHHHHH------------------cCCHHHHHHHHhCCCCCCCcC
Confidence            99999999999985 99999999998                  789999999997 48877766

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=7.6e-19  Score=169.74  Aligned_cols=144  Identities=22%  Similarity=0.246  Sum_probs=113.5

Q ss_pred             ccCCcccc-HHHHHHHhcCCHHHHHHHHhcCCCCC---------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 010590          250 ADLEDQKI-RRMRRALDSSDVELVKLMVMGEGLNL---------DEALALHYAVENCSREVVKALLELGAADVNYPAGPA  319 (506)
Q Consensus       250 ~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~d~---------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~  319 (506)
                      ...|+.|. ++||.|+..|+.+++++|+ +.|+|+         .|.||||+|+..|+.+++++|+++|+ |+|.+++..
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL-~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA-DVN~~~~~~  103 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAIL-KLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA-DVNRYAEEA  103 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHH-HCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CcCcccCCC
Confidence            34566665 5677788889999999999 777654         48899999999999999999999999 999875368


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHH---HHHHcCCCCCCcccCC----ChHHHHHHHHH
Q 010590          320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTS---DFLFKGAVPGLTHIEP----NKLRLCLELVQ  392 (506)
Q Consensus       320 g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~---~~l~~~~~~~~~~~~~----~~~~~~~~Ll~  392 (506)
                      |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+....   ..+..+...+.....+    ...++++.|++
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ei~~~Lis  183 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNEISNFYKHPKKILINFDILKILVS  183 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCcccccccChhhhhccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999986321   1222232221111111    24578888888


Q ss_pred             hcc
Q 010590          393 SAA  395 (506)
Q Consensus       393 ~ga  395 (506)
                      ++.
T Consensus       184 h~v  186 (300)
T PHA02884        184 HFI  186 (300)
T ss_pred             HHH
Confidence            887

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=1.3e-19  Score=153.58  Aligned_cols=103  Identities=31%  Similarity=0.349  Sum_probs=83.1

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCC------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHh
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGL------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM  330 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~  330 (506)
                      ..-+.+|+..+....|+.||. ..+      |.+|.||||.|+.+|+.++|+.|+..|| +++.+. ..||||||-||..
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~-e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA-n~~a~T-~~GWTPLhSAckW  140 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLS-EKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA-NKEAKT-NEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHH-hccccccccccccccHHHHHHhcCchHHHHHHHHccC-Cccccc-ccCccchhhhhcc
Confidence            445677888888888888883 222      4468888888888888888888888888 888887 7888888888888


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          331 VSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       331 ~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      ++.+++.+||++|||||+.....+||||+||.
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~  172 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG  172 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhc
Confidence            88888888888888888888888888888885

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.8e-18  Score=167.19  Aligned_cols=112  Identities=23%  Similarity=0.210  Sum_probs=99.1

Q ss_pred             CCCCh-HHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCcH
Q 010590          282 NLDEA-LALHYAVENCSREVVKALLELGAADVNYPA---GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVR-TVDGVTP  356 (506)
Q Consensus       282 d~~g~-t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~---~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tp  356 (506)
                      |..|+ ++||.|+..|+.+++++|+++|+ ++|.++   +..|.||||+|+..|+.+++++|+++|||+|.+ +..|.||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GA-diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGA-DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCC-CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            44555 57788888899999999999999 999974   258999999999999999999999999999996 4689999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          357 LDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       357 Lh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      ||+|+.                  .++.+++++|++.|++++.+           +..|.||||.|+
T Consensus       108 Lh~Aa~------------------~~~~eivklLL~~GAdin~k-----------d~~G~TpL~~A~  145 (300)
T PHA02884        108 LYISVL------------------HGCLKCLEILLSYGADINIQ-----------TNDMVTPIELAL  145 (300)
T ss_pred             HHHHHH------------------cCCHHHHHHHHHCCCCCCCC-----------CCCCCCHHHHHH
Confidence            999997                  78999999999999999998           456779999983

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=2e-18  Score=146.45  Aligned_cols=118  Identities=27%  Similarity=0.311  Sum_probs=103.1

Q ss_pred             ccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 010590          242 HDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPA  316 (506)
Q Consensus       242 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~  316 (506)
                      ..........+|..|+||||-|+.+|+.++|+.|+ ..|+|+     .||||||-||...+.+|+-+||.+|+ |||...
T Consensus        83 L~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhga-DVnA~t  160 (228)
T KOG0512|consen   83 LSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGA-DVNAQT  160 (228)
T ss_pred             HHhccccccccccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccchhHHHHHHhccC-cccccc
Confidence            33444566678999999999999999999999999 777776     49999999999999999999999999 999998


Q ss_pred             CCCCChHHHHHHHhCC-HHHHHHHHH-CCCCCCCCCCCCCcHHHHHHH
Q 010590          317 GPAGKTPLHIAAEMVS-PDMVAVLLD-HHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       317 ~~~g~tpLh~A~~~~~-~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~  362 (506)
                       ...+||||+||...+ ...+.+|+. ++.++-..+..+.||+.+|.+
T Consensus       161 -~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  161 -KGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             -cccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence             899999999996654 456677765 588999999999999999986

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=3e-18  Score=136.87  Aligned_cols=88  Identities=41%  Similarity=0.627  Sum_probs=80.7

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCC-ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q 010590          260 MRRALDSSDVELVKLMVMGEGLNLD-EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV  338 (506)
Q Consensus       260 L~~A~~~g~~~~v~~Ll~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~  338 (506)
                      ||+||..|+.+++++|+ +.+.+++ |.||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+|+..|+.+++++
T Consensus         1 L~~A~~~~~~~~~~~ll-~~~~~~~~~~~~l~~A~~~~~~~~~~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~~~~~~~~   77 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLL-EKGADINLGNTALHYAAENGNLEIVKLLLENGA-DINSQD-KNGNTALHYAAENGNLEIVKL   77 (89)
T ss_dssp             HHHHHHTTTHHHHHHHH-HTTSTTTSSSBHHHHHHHTTTHHHHHHHHHTTT-CTT-BS-TTSSBHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHH-HCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccccC-CCCCCHHHHHHHcCCHHHHHH
Confidence            79999999999999999 4666665 7999999999999999999999999 999999 899999999999999999999


Q ss_pred             HHHCCCCCCCCC
Q 010590          339 LLDHHADPNVRT  350 (506)
Q Consensus       339 Ll~~ga~~~~~d  350 (506)
                      |+++|++++.+|
T Consensus        78 Ll~~g~~~~~~n   89 (89)
T PF12796_consen   78 LLEHGADVNIRN   89 (89)
T ss_dssp             HHHTTT-TTSS-
T ss_pred             HHHcCCCCCCcC
Confidence            999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.76  E-value=9.5e-19  Score=193.43  Aligned_cols=181  Identities=21%  Similarity=0.170  Sum_probs=135.6

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcC--CCCC-----CChHHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGE--GLNL-----DEALALH-YAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~d~-----~g~t~Lh-~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..+..+++.|+..|+.+.++.++ +.  +.|+     .|+|||| .|+.+++.+++++|++.|+     .+ ..|.||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL-~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~-~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDL-EEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RG-AVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHh-ccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CC-CcChHHHH
Confidence            35689999999999999999999 44  5544     4999999 8999999999999999886     34 78999999


Q ss_pred             HHHHh---CCHHHHHHHHHCCCC------CC----CCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH
Q 010590          326 IAAEM---VSPDMVAVLLDHHAD------PN----VRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ  392 (506)
Q Consensus       326 ~A~~~---~~~~~v~~Ll~~ga~------~~----~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~  392 (506)
                      .|+..   +...++++++..+.+      ++    ..+..|.||||+|+.                  .++.++++.|++
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~------------------~~~~eiVklLL~  149 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAH------------------RQNYEIVKLLLE  149 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHH------------------hCCHHHHHHHHh
Confidence            99873   223344555554432      11    123579999999998                  789999999999


Q ss_pred             hccCccccccCCCCCCC---CCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhh
Q 010590          393 SAALVLSREEGILNEPS---SSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHH  469 (506)
Q Consensus       393 ~ga~~~~~~~~~~~~~~---~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa  469 (506)
                      +||+++.++........   .....|.||||.|+.           .+....+.+++  ..+.++|.+|..||||||+|+
T Consensus       150 ~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~-----------~~~~~iv~lLl--~~gadin~~d~~g~T~Lh~A~  216 (743)
T TIGR00870       150 RGASVPARACGDFFVKSQGVDSFYHGESPLNAAAC-----------LGSPSIVALLS--EDPADILTADSLGNTLLHLLV  216 (743)
T ss_pred             CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHH-----------hCCHHHHHHHh--cCCcchhhHhhhhhHHHHHHH
Confidence            99999977543322111   123468999999832           22333445555  344789999999999999999


Q ss_pred             hcC
Q 010590          470 QMG  472 (506)
Q Consensus       470 ~~g  472 (506)
                      ..+
T Consensus       217 ~~~  219 (743)
T TIGR00870       217 MEN  219 (743)
T ss_pred             hhh
Confidence            986

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.76  E-value=3.8e-18  Score=142.35  Aligned_cols=105  Identities=34%  Similarity=0.499  Sum_probs=90.9

Q ss_pred             HHHHhcCCCceeEEEEEC-CeEEeeeehhhcccCHHHHHhhCCC-CCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCC
Q 010590           15 LNLLINGQAFSDVTFSVE-GRLVHAHRCILAARSLFFRKFFCGP-DPPSGLDPATASRINQGPPSPASRPTGVIPVNSVG   92 (506)
Q Consensus        15 l~~l~~~~~~~Dv~~~v~-~~~~~aHr~vLaa~S~yF~~~f~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~   92 (506)
                      |+.+++++.+|||+|.++ ++.|+|||.||+++|+||+.||.+. +.+.                    ...+|.+++++
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~--------------------~~~~i~~~~~~   60 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKES--------------------TVPEISLPDVS   60 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTS--------------------SEEEEEETTSC
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccc--------------------ccccccccccc
Confidence            578999999999999999 8999999999999999999999987 4443                    23579999999


Q ss_pred             HHHHHHHhhhhhccceecc-CCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590           93 YEVFLLLLQFLYSGQVSIV-PQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus        93 ~~~~~~ll~f~Ytg~~~~~-~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      +++|+.+++|+|+|++.+. .+.                       +.+++..|+.|+++.++..|.+.+.
T Consensus        61 ~~~~~~~l~~~Y~~~~~~~~~~~-----------------------~~~ll~lA~~~~~~~L~~~~~~~l~  108 (111)
T PF00651_consen   61 PEAFEAFLEYMYTGEIEINSDEN-----------------------VEELLELADKLQIPELKKACEKFLQ  108 (111)
T ss_dssp             HHHHHHHHHHHHHSEEEEE-TTT-----------------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             ccccccccccccCCcccCCHHHH-----------------------HHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            9999999999999999887 333                       7889999999999999999998875

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=5.4e-19  Score=174.77  Aligned_cols=208  Identities=24%  Similarity=0.217  Sum_probs=149.5

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      ..--.+.-|+..|..+-|+.|+ ..|+     |++|.|+||-+|...+.+||++|+++|+ +||..| .+||||||.|+.
T Consensus        39 ~~sa~~l~A~~~~d~~ev~~ll-~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga-~Vn~~d-~e~wtPlhaaas  115 (527)
T KOG0505|consen   39 EDSAVFLEACSRGDLEEVRKLL-NRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGA-NVNAQD-NEGWTPLHAAAS  115 (527)
T ss_pred             CchHHHHhccccccHHHHHHHh-ccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcC-Cccccc-cccCCcchhhcc
Confidence            3344567789999999999999 4444     5579999999999999999999999999 999999 899999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-HHHHH-----HcCCCCCCcccC--CChHHHHHHHHHhccCccccc
Q 010590          330 MVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL-TSDFL-----FKGAVPGLTHIE--PNKLRLCLELVQSAALVLSRE  401 (506)
Q Consensus       330 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~-~~~~l-----~~~~~~~~~~~~--~~~~~~~~~Ll~~ga~~~~~~  401 (506)
                      .|+..++++|+++||++-..|.+|..|+.++... ...++     ..|.+....-..  ..-++-+..++..|.+.++++
T Consensus       116 cg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~  195 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH  195 (527)
T ss_pred             cccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence            9999999999999999999999999999998721 11111     122221111000  112334667777888888873


Q ss_pred             cCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCCCCCCCCC
Q 010590          402 EGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRMDGDDD  481 (506)
Q Consensus       402 ~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~~~~~~~~  481 (506)
                      .           .|-|.||.|...++           .....+++  ..+..++.+|.+||||||.||-.|-+..-. ..
T Consensus       196 ~-----------rG~T~lHvAaa~Gy-----------~e~~~lLl--~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~e-lL  250 (527)
T KOG0505|consen  196 A-----------RGATALHVAAANGY-----------TEVAALLL--QAGYSVNIKDYDGWTPLHAAAHWGQEDACE-LL  250 (527)
T ss_pred             c-----------ccchHHHHHHhhhH-----------HHHHHHHH--HhccCcccccccCCCcccHHHHhhhHhHHH-HH
Confidence            3           36688888732111           11222333  234789999999999999999998544322 33


Q ss_pred             CCchhhhhh
Q 010590          482 SSHQSQREA  490 (506)
Q Consensus       482 ~~~~~~~~~  490 (506)
                      -+|++.++.
T Consensus       251 ~~~ga~~d~  259 (527)
T KOG0505|consen  251 VEHGADMDA  259 (527)
T ss_pred             HHhhcccch
Confidence            344444443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.2e-18  Score=157.41  Aligned_cols=110  Identities=27%  Similarity=0.393  Sum_probs=102.0

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCCC-----ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLD-----EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~-----g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ..-|+.|.+||||||+.|+..+++.|| ..|+.+|     ..||||+|+..||.++|+.||+..+ |+|..+ ..|+|||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmgddtplhlaaahghrdivqkll~~ka-dvnavn-ehgntpl  104 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA-DVNAVN-EHGNTPL  104 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHH-hcccccccccCCCCcchhhhhhcccHHHHHHHHHHhc-ccchhh-ccCCCch
Confidence            344788999999999999999999999 6666443     5799999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      ||||..|...+++-|+..||.+++.++.|.|||..|..
T Consensus       105 hyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            99999999999999999999999999999999999874

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.4e-17  Score=132.94  Aligned_cols=89  Identities=38%  Similarity=0.474  Sum_probs=82.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 010590          289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFL  368 (506)
Q Consensus       289 Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l  368 (506)
                      ||+||..|+.+++++|++.+. +++.     |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.      
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~-~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------   68 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA-DINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAE------   68 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS-TTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHH------
T ss_pred             CHHHHHcCCHHHHHHHHHCcC-CCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHH------
Confidence            799999999999999999998 7765     8899999999999999999999999999999999999999998      


Q ss_pred             HcCCCCCCcccCCChHHHHHHHHHhccCccccc
Q 010590          369 FKGAVPGLTHIEPNKLRLCLELVQSAALVLSRE  401 (506)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~  401 (506)
                                  .++.+++++|+++|++++.+|
T Consensus        69 ------------~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   69 ------------NGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ------------TTHHHHHHHHHHTTT-TTSS-
T ss_pred             ------------cCCHHHHHHHHHcCCCCCCcC
Confidence                        799999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.74  E-value=3.4e-18  Score=153.18  Aligned_cols=135  Identities=15%  Similarity=0.032  Sum_probs=110.2

Q ss_pred             CChHHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHH---HHHHHHCCCCCCCCC-CCCCc
Q 010590          284 DEALALHYAVENCSR----EVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDM---VAVLLDHHADPNVRT-VDGVT  355 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~---v~~Ll~~ga~~~~~d-~~g~t  355 (506)
                      ++.++||+||..|+.    +++++|++.|+ +++.+| ..|+||||+|+..|+.+.   +++|+++|+++|.+| ..|+|
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~-~~~~~d-~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGH-LLHRYD-HHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcch-hhhccC-CCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            578899999999998    66778889999 999998 899999999999988654   899999999999998 58999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH-hccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCC
Q 010590          356 PLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ-SAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSS  434 (506)
Q Consensus       356 pLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~  434 (506)
                      |||+|+.                  .++.+++++|++ .|++++.+           +..|.||||+|+....       
T Consensus        97 pLh~A~~------------------~g~~~iv~~Ll~~~gad~~~~-----------d~~g~tpL~~A~~~~~-------  140 (166)
T PHA02743         97 LLHIAAS------------------TKNYELAEWLCRQLGVNLGAI-----------NYQHETAYHIAYKMRD-------  140 (166)
T ss_pred             HHHHHHH------------------hCCHHHHHHHHhccCCCccCc-----------CCCCCCHHHHHHHcCC-------
Confidence            9999997                  688999999995 79999987           5677899999843221       


Q ss_pred             CCccccccccccCCCcceeeccCCCCCC
Q 010590          435 GSATINNNSLNLDSSRLVYLNLGAGTGN  462 (506)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~ln~~D~~G~  462 (506)
                          ..++.+++  ..++++|.+|..|.
T Consensus       141 ----~~iv~~Ll--~~ga~~~~~~~~~~  162 (166)
T PHA02743        141 ----RRMMEILR--ANGAVCDDPLSIGL  162 (166)
T ss_pred             ----HHHHHHHH--HcCCCCCCcccCCc
Confidence                12333444  34477888887765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=9.7e-18  Score=165.92  Aligned_cols=139  Identities=24%  Similarity=0.272  Sum_probs=122.5

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCC-----------
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVN-----------  313 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~-----------  313 (506)
                      ...+..|.|+||.+|...+.+||++|+ +.|+++     +||||||.|+..|+..++++|+.+|+ ++.           
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~-e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA-~~~avNsdg~~P~d  144 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLV-ENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA-NLLAVNSDGNMPYD  144 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHH-HhcCCccccccccCCcchhhcccccHHHHHHHHHhhh-hhhhccCCCCCccc
Confidence            556789999999999999999999999 777766     48999999999999999999999998 322           


Q ss_pred             ------------------------------------------------CCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q 010590          314 ------------------------------------------------YPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD  345 (506)
Q Consensus       314 ------------------------------------------------~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~  345 (506)
                                                                      +.+ ..|.|.||.|+..|..++.++|++.|.+
T Consensus       145 l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~-~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  145 LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH-ARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc-cccchHHHHHHhhhHHHHHHHHHHhccC
Confidence                                                            233 3489999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCC
Q 010590          346 PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPS  409 (506)
Q Consensus       346 ~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  409 (506)
                      ++++|.+||||||.|+.+                  +..++|.+|+++|++.+.+...|.++..
T Consensus       224 ~~~~D~dgWtPlHAAA~W------------------g~~~~~elL~~~ga~~d~~t~~g~~p~d  269 (527)
T KOG0505|consen  224 VNIKDYDGWTPLHAAAHW------------------GQEDACELLVEHGADMDAKTKMGETPLD  269 (527)
T ss_pred             cccccccCCCcccHHHHh------------------hhHhHHHHHHHhhcccchhhhcCCCCcc
Confidence            999999999999999984                  6778999999999999999666655444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.72  E-value=8.6e-17  Score=151.61  Aligned_cols=148  Identities=26%  Similarity=0.252  Sum_probs=121.3

Q ss_pred             HHHHHHHhhcccchhHHHhhcccccccc-cccccccccccCCccccHHHHHHHhc-----CCHHHHHHHHhcCCCCC---
Q 010590          213 EVVAKIEDLRHKSSLARRSLISHHHHHH-HHDLSAAAAADLEDQKIRRMRRALDS-----SDVELVKLMVMGEGLNL---  283 (506)
Q Consensus       213 ~~~~~l~~~~~~~~l~~a~~~~~~~~~~-~l~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~~d~---  283 (506)
                      +.+..+.+.++.|.|............. ............++.|+||+++|+..     .+.++|.-|.+-.++|.   
T Consensus       258 ~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAs  337 (452)
T KOG0514|consen  258 EYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKAS  337 (452)
T ss_pred             HHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhh
Confidence            4455677788888887765544433332 22333445556788999999999875     36788999984444554   


Q ss_pred             -CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Q 010590          284 -DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH-HADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       284 -~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~  361 (506)
                       .|.|+|++|+..|+.++|+.||..|+ |||++| .+|.|+|++||.+||.++|++||.. ++|+...|.+|-|+|.+|.
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgA-dVNiQD-dDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGA-DVNIQD-DDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccC-CCcccc-CCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence             39999999999999999999999999 999999 8999999999999999999999987 8999999999999999998


Q ss_pred             H
Q 010590          362 T  362 (506)
Q Consensus       362 ~  362 (506)
                      .
T Consensus       416 e  416 (452)
T KOG0514|consen  416 E  416 (452)
T ss_pred             h
Confidence            7

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=2.9e-18  Score=156.54  Aligned_cols=126  Identities=27%  Similarity=0.278  Sum_probs=107.5

Q ss_pred             HhcCCHHHHHHHHh--cCCCCC---CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q 010590          264 LDSSDVELVKLMVM--GEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV  338 (506)
Q Consensus       264 ~~~g~~~~v~~Ll~--~~~~d~---~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~  338 (506)
                      |+.|+.--|++-|+  +++.|+   .|.+||||||+.|+..+|+.||.+|+ .+|..+ ....||||+|+.+||-++|+.
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rga-rvn~tn-mgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGA-RVNSTN-MGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccc-cccccc-CCCCcchhhhhhcccHHHHHH
Confidence            45555444555553  333333   48999999999999999999999999 999998 788999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCC
Q 010590          339 LLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPS  409 (506)
Q Consensus       339 Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  409 (506)
                      |+++.+|+|+.+..|+|||||||-                  -+...++.-|+..||.++..+++|.++++
T Consensus        86 ll~~kadvnavnehgntplhyacf------------------wgydqiaedli~~ga~v~icnk~g~tpld  138 (448)
T KOG0195|consen   86 LLSRKADVNAVNEHGNTPLHYACF------------------WGYDQIAEDLISCGAAVNICNKKGMTPLD  138 (448)
T ss_pred             HHHHhcccchhhccCCCchhhhhh------------------hcHHHHHHHHHhccceeeecccCCCCchh
Confidence            999999999999999999999997                  46777889999999999999888876544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.71  E-value=1.4e-17  Score=147.58  Aligned_cols=100  Identities=25%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             CCCCCChHHHHHHHHcCCHHHHHHHHHcCC-CC-----CCCCCCCCCChHHHHHHHhCCHH---HHHHHHHCCCCCCCCC
Q 010590          280 GLNLDEALALHYAVENCSREVVKALLELGA-AD-----VNYPAGPAGKTPLHIAAEMVSPD---MVAVLLDHHADPNVRT  350 (506)
Q Consensus       280 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-~~-----v~~~~~~~g~tpLh~A~~~~~~~---~v~~Ll~~ga~~~~~d  350 (506)
                      ..|.+|.||||+||..|+.  +++++..+. .+     ++.+| ..|+||||+|+..|+.+   ++++|++.|++++.+|
T Consensus        12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYN-RHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhc-CCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            3466899999999999983  444443332 01     23456 79999999999999874   6889999999999998


Q ss_pred             -CCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHh-ccCcccc
Q 010590          351 -VDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQS-AALVLSR  400 (506)
Q Consensus       351 -~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~  400 (506)
                       ..|+||||+|+.                  .++.+++.+|+.. |++++.+
T Consensus        89 ~~~g~T~Lh~A~~------------------~~~~~i~~~Ll~~~g~d~n~~  122 (154)
T PHA02736         89 RVFGNTPLHIAVY------------------TQNYELATWLCNQPGVNMEIL  122 (154)
T ss_pred             CCCCCcHHHHHHH------------------hCCHHHHHHHHhCCCCCCccc
Confidence             499999999998                  6888999999974 7776655

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.69  E-value=1.3e-17  Score=170.54  Aligned_cols=183  Identities=19%  Similarity=0.121  Sum_probs=143.9

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCC-----------------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGL-----------------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPA  319 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~-----------------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~  319 (506)
                      .+-|.-|++.|+.+.+..||+..+.                 |++|.|+||.||.+|+.+++++|+++.+ -++..| ..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea-~ldl~d-~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA-LLDLCD-TK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh-hhhhhh-cc
Confidence            3457789999999999999942221                 4579999999999999999999999999 999999 89


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccc
Q 010590          320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLS  399 (506)
Q Consensus       320 g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~  399 (506)
                      |.+|||+|++.|+.++|++|+..+..+|+.+..|.||||.|++                  .++.+++.+|+.+|+|.-.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq------------------hgh~dvv~~Ll~~~adp~i  143 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ------------------HGHLEVVFYLLKKNADPFI  143 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh------------------hcchHHHHHHHhcCCCccc
Confidence            9999999999999999999999999999999999999999998                  7999999999999999999


Q ss_pred             cccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCCC
Q 010590          400 REEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSR  475 (506)
Q Consensus       400 ~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~~  475 (506)
                      ++..+.           |+|-+||..+...+....++..... .++..    ..-..++-.+-+|||+|+++|+.+
T Consensus       144 ~nns~~-----------t~ldlA~qfgr~~Vvq~ll~~~~~~-~~~~~----~~~~~~~~~~~~plHlaakngh~~  203 (854)
T KOG0507|consen  144 RNNSKE-----------TVLDLASRFGRAEVVQMLLQKKFPV-QSSLR----VGDIKRPFPAIYPLHLAAKNGHVE  203 (854)
T ss_pred             cCcccc-----------cHHHHHHHhhhhHHHHHHhhhccch-hhccc----CCCCCCCCCCcCCcchhhhcchHH
Confidence            966555           5555544333322222222211000 11111    114566788999999999999654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=3.7e-15  Score=126.06  Aligned_cols=108  Identities=40%  Similarity=0.540  Sum_probs=100.4

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .|..|.||||+|+..|+.+++++|+ +.+.     +..|.||||+|+..++.+++++|++.|+ +++..+ ..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~-~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNARD-KDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccC-CCCCCHHHH
Confidence            4578999999999999999999999 4444     3468999999999999999999999999 999998 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      |+..++.+++++|+++|.+++..|..|.||+++|..
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~  115 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK  115 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            999999999999999999999999999999999987

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.62  E-value=2.3e-15  Score=114.44  Aligned_cols=101  Identities=27%  Similarity=0.390  Sum_probs=91.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCCC----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCH
Q 010590          258 RRMRRALDSSDVELVKLMVMGEGLNL----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSP  333 (506)
Q Consensus       258 t~L~~A~~~g~~~~v~~Ll~~~~~d~----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~  333 (506)
                      --+.|++++|..+-|+-.+ ..|.|+    +|++|||||+-.|..+++++|+..|+ +++.+| +.|-|||.-|++.||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v-~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA-~i~~kD-KygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSV-NEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGA-NIQDKD-KYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHH-HccccHHHHhCCcccchHhhhcchHHHHHHHHHhcc-ccCCcc-ccCCcHHHHHHHHhhH
Confidence            3468999999999999988 566666    48999999999999999999999999 999999 9999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          334 DMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       334 ~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      ++|++||+.|||-..+..+|.+.+..+-
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHHhhcc
Confidence            9999999999999998889987776554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.62  E-value=2e-15  Score=157.22  Aligned_cols=134  Identities=16%  Similarity=0.080  Sum_probs=110.7

Q ss_pred             cHHHHHHHhcC--CHHHHHHHHhcCCCCCC---ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC--ChHHHHHHH
Q 010590          257 IRRMRRALDSS--DVELVKLMVMGEGLNLD---EALALHYAVENCSREVVKALLELGAADVNYPAGPAG--KTPLHIAAE  329 (506)
Q Consensus       257 ~t~L~~A~~~g--~~~~v~~Ll~~~~~d~~---g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g--~tpLh~A~~  329 (506)
                      .-.||.=..++  +.+++++|+ ++|++..   +..+++.|+..|+.++|++|+++|| |++.+| ..|  .||||+|+.
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LI-d~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GA-DIN~kD-~~g~~~TpLh~A~~  383 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMI-DEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGN-VVVEDD-DNIINIMPLFPTLS  383 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHH-HCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCC-chhhhc-CCCCChhHHHHHHH
Confidence            34566666676  679999999 7888663   5677889999999999999999999 999888 554  699998877


Q ss_pred             hCCHH---HHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          330 MVSPD---MVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       330 ~~~~~---~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      .+..+   ++++|+++|||+|.+|..|+||||+|+.                  .++.+++.+|+++|++++.+      
T Consensus       384 n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~------------------~~n~eivelLLs~GADIN~k------  439 (631)
T PHA02792        384 IHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIE------------------SHSVSLVEWLIDNGADINIT------  439 (631)
T ss_pred             hccHhHHHHHHHHHhcCCccccccccCcchHHHHHH------------------cCCHHHHHHHHHCCCCCCCc------
Confidence            66543   5788899999999999999999999987                  68889999999999999988      


Q ss_pred             CCCCCCccccCCCCCC
Q 010590          407 EPSSSTATVIYPPPMS  422 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a  422 (506)
                           +..|.||||.|
T Consensus       440 -----D~~G~TpL~~A  450 (631)
T PHA02792        440 -----TKYGSTCIGIC  450 (631)
T ss_pred             -----CCCCCCHHHHH
Confidence                 44566888876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.61  E-value=4.4e-16  Score=163.71  Aligned_cols=237  Identities=17%  Similarity=0.143  Sum_probs=153.1

Q ss_pred             hcccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC------CCCChHHHHHHHH
Q 010590          221 LRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL------NLDEALALHYAVE  294 (506)
Q Consensus       221 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------d~~g~t~Lh~A~~  294 (506)
                      .+.+++|.........................|++|.+||.+|+-.||..+|+.|+ ++.+      |.++.|+|.+||.
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~ll-k~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLL-KAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHH-hhhhhhhhhcccccCceEEEecC
Confidence            33445554444333333333333344555667888888888888888888888888 4444      3357788888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHH-----HHHHH
Q 010590          295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVR--TVDGVTPLDILRT-----LTSDF  367 (506)
Q Consensus       295 ~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~--d~~g~tpLh~A~~-----~~~~~  367 (506)
                      .|+.++|++||.+|+ +-..++ ....|||.+|...|..+++++|+..|+.+|.+  .+-|..||++|..     .++.+
T Consensus       834 ggr~~vvelLl~~ga-nkehrn-vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGA-NKEHRN-VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             CCcchHHHHHHHhhc-cccccc-hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            888888888888888 777777 77888888888888888888888888887776  3568888888874     23445


Q ss_pred             HHcCCCCCCc-----------ccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCC-------
Q 010590          368 LFKGAVPGLT-----------HIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVH-------  429 (506)
Q Consensus       368 l~~~~~~~~~-----------~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~-------  429 (506)
                      |..|.+.+..           +.-.++.+++.+||.+.+++..|-+           .|.|||.-++..++..       
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRak-----------tgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAK-----------TGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcc-----------cCCcccchhhcCCccccchhhhh
Confidence            5555554333           1114556778888888888888744           4555555433222211       


Q ss_pred             -----CCCC------------CCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          430 -----NNSS------------SGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       430 -----~~~~------------~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                           ..+.            ...+.-..+..++  .+.+-+..++++|+|||.+||.-|.
T Consensus       981 ~gad~nasPvp~T~dtalti~a~kGh~kfv~~ll--n~~atv~v~NkkG~T~Lwla~~Gg~ 1039 (2131)
T KOG4369|consen  981 AGADTNASPVPNTWDTALTIPANKGHTKFVPKLL--NGDATVRVPNKKGCTVLWLASAGGA 1039 (2131)
T ss_pred             cccccccCCCCCcCCccceeecCCCchhhhHHhh--CCccceecccCCCCcccchhccCCc
Confidence                 0000            0111111111112  2235678899999999999999883

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.58  E-value=4.9e-15  Score=117.84  Aligned_cols=90  Identities=33%  Similarity=0.511  Sum_probs=79.4

Q ss_pred             eEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           26 DVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        26 Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      ||+|.++|+.|++||.+|+++|+||+.||.+++.++                    ....|.++++++++|+.+++|+|+
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~--------------------~~~~i~l~~~~~~~f~~~l~~ly~   60 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKES--------------------KKSEIYLDDVSPEDFRALLEFLYT   60 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccC--------------------CCCEEEecCCCHHHHHHHHHeecC
Confidence            789999999999999999999999999999877654                    247899999999999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQ  158 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~  158 (506)
                      +++.+...                       .+.+++.+|+.|+++.+...|+
T Consensus        61 ~~~~~~~~-----------------------~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       61 GKLDLPEE-----------------------NVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             ceeecCHH-----------------------HHHHHHHHHHHHCcHHHHhhhC
Confidence            99877543                       2578999999999999988773

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.55  E-value=9.5e-15  Score=151.63  Aligned_cols=143  Identities=27%  Similarity=0.297  Sum_probs=114.0

Q ss_pred             CccccHHHHHHHhc---CCHHHHHHHHhcCC--C-CC------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----
Q 010590          253 EDQKIRRMRRALDS---SDVELVKLMVMGEG--L-NL------DEALALHYAVENCSREVVKALLELGAADVNYPA----  316 (506)
Q Consensus       253 ~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~--~-d~------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~----  316 (506)
                      ..-|.|.||.|..+   ++-++++.||+-..  + |+      .|.||||.|+.+.+.++|++||+.|| ||+.+.    
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gA-DV~aRa~G~F  218 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGA-DVHARACGAF  218 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCC-chhhHhhccc
Confidence            46789999999874   45688999984221  1 11      48999999999999999999999999 998642    


Q ss_pred             ----C--------------CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcc
Q 010590          317 ----G--------------PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTH  378 (506)
Q Consensus       317 ----~--------------~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~  378 (506)
                          +              ..|..||-+||..++.+++++|+++|||++++|.+|+|.||..+.                
T Consensus       219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi----------------  282 (782)
T KOG3676|consen  219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVI----------------  282 (782)
T ss_pred             cCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHH----------------
Confidence                1              137789999999999999999999999999999999999998886                


Q ss_pred             cCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          379 IEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       379 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                        ....++-..+++.|++         +.....|..|.|||-+|+
T Consensus       283 --~~~~~My~~~L~~ga~---------~l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  283 --HFVTEMYDLALELGAN---------ALEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             --HHHHHHHHHHHhcCCC---------ccccccccCCCChHHHHH
Confidence              2455677788999988         112234778889998885

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=5.4e-15  Score=106.50  Aligned_cols=55  Identities=49%  Similarity=0.681  Sum_probs=33.5

Q ss_pred             HHHcC-CCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 010590          304 LLELG-AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL  360 (506)
Q Consensus       304 Ll~~g-~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A  360 (506)
                      ||++| + ++|.+| ..|+||||+||..|+.+++++|++.|+|++.+|.+|+||||+|
T Consensus         1 LL~~~~~-~~n~~d-~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPA-DVNAQD-KYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T---TT----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcC-CCcCcC-CCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 6 999999 8999999999999999999999999999999999999999997

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.54  E-value=4.7e-14  Score=138.15  Aligned_cols=146  Identities=26%  Similarity=0.346  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHhcCCCceeEEEEECC-----eEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 010590            8 RSLSLDYLNLLINGQAFSDVTFSVEG-----RLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRP   82 (506)
Q Consensus         8 ~~~~~~~l~~l~~~~~~~Dv~~~v~~-----~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~   82 (506)
                      ..+..+..-.++++...+||.|+|++     +.|||||.|||..|..|.+||.+++.+.                    .
T Consensus        98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~--------------------~  157 (521)
T KOG2075|consen   98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED--------------------A  157 (521)
T ss_pred             hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc--------------------c
Confidence            45667788889999999999999973     6799999999999999999999999886                    2


Q ss_pred             CceEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590           83 TGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus        83 ~~~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      ..+|+++++.|.+|..+|.|+|++.+.+..+.                       +..++.+|++|.++.|...|.+++.
T Consensus       158 s~ei~lpdvepaaFl~~L~flYsdev~~~~dt-----------------------vi~tl~~AkKY~VpaLer~CVkflr  214 (521)
T KOG2075|consen  158 SLEIRLPDVEPAAFLAFLRFLYSDEVKLAADT-----------------------VITTLYAAKKYLVPALERQCVKFLR  214 (521)
T ss_pred             CceeecCCcChhHhHHHHHHHhcchhhhhHHH-----------------------HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            47899999999999999999999888775443                       6789999999999999999999887


Q ss_pred             HHHhhhhHHHHHHHHH-HhhhhhhHHHHHHHhHHHHhc
Q 010590          163 NMVEKASIEDVMKVLI-ASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       163 ~~l~~~~~~~v~~~L~-~a~~~~~~~L~~~cl~~i~~~  199 (506)
                      ..+   ...+.+..|. .+....-++|.+.|++.+...
T Consensus       215 ~~l---~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~  249 (521)
T KOG2075|consen  215 KNL---MADNAFLELFQRAKLFDEPSLISICLEVIDKS  249 (521)
T ss_pred             Hhc---CChHHHHHHHHHHHhhcCHHHHHHHHHHhhhH
Confidence            555   3445454454 488889999999999988765

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.52  E-value=8.1e-14  Score=117.74  Aligned_cols=110  Identities=38%  Similarity=0.459  Sum_probs=100.5

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      |.+|.||||+|+..++.+++++|++.|+ +++..+ ..|.||||+|+..+..+++++|++.|++++..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~-~~~~~~-~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGA-DVNAKD-NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            4579999999999999999999999999 888888 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          362 TLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                      .                  .+..+++++|++.|.+++..           +..+.||++.+
T Consensus        82 ~------------------~~~~~~~~~L~~~~~~~~~~-----------~~~~~~~l~~~  113 (126)
T cd00204          82 R------------------NGNLDVVKLLLKHGADVNAR-----------DKDGRTPLHLA  113 (126)
T ss_pred             H------------------cCcHHHHHHHHHcCCCCccc-----------CCCCCCHHHHH
Confidence            8                  67899999999999777766           45666888876

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.52  E-value=5.9e-14  Score=145.80  Aligned_cols=121  Identities=26%  Similarity=0.386  Sum_probs=111.0

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCCCCC----------------------------ChHHHHHHHHcCCHHHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGLNLD----------------------------EALALHYAVENCSREVVKAL  304 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~----------------------------g~t~Lh~A~~~g~~~~v~~L  304 (506)
                      ...|.||||+|+.+.+.++|++|+ +.|+|++                            |..||.+||--++.+++++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl-~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLL-AAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHH-HcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            467999999999999999999999 7887762                            46899999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCC
Q 010590          305 LELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD--PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPN  382 (506)
Q Consensus       305 l~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~--~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~  382 (506)
                      +++|| |++.+| ..|+|.||..+.+-..++-.+++++|++  ...+|..|-|||.+|+.                  -+
T Consensus       260 l~~gA-d~~aqD-S~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak------------------lG  319 (782)
T KOG3676|consen  260 LAHGA-DPNAQD-SNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK------------------LG  319 (782)
T ss_pred             HhcCC-CCCccc-cCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH------------------hh
Confidence            99999 999999 8999999999999999999999999999  89999999999999998                  46


Q ss_pred             hHHHHHHHHHhc
Q 010590          383 KLRLCLELVQSA  394 (506)
Q Consensus       383 ~~~~~~~Ll~~g  394 (506)
                      +.++.+++++.-
T Consensus       320 k~emf~~ile~~  331 (782)
T KOG3676|consen  320 KKEMFQHILERR  331 (782)
T ss_pred             hHHHHHHHHHhh
Confidence            777777888874

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.49  E-value=1.6e-14  Score=152.29  Aligned_cols=208  Identities=15%  Similarity=0.132  Sum_probs=109.5

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCChHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPA-GPAGKTPL  324 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~-~~~g~tpL  324 (506)
                      ..|+.+.|+|-+||..|..++|++|| ..|+     |+...|||.+|...|.++++..||.+|+ .||.+. .+.|-.||
T Consensus       819 Qsdrtkdt~lSlacsggr~~vvelLl-~~gankehrnvsDytPlsla~Sggy~~iI~~llS~Gs-eInSrtgSklgisPL  896 (2131)
T KOG4369|consen  819 QSDRTKDTMLSLACSGGRTRVVELLL-NAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGS-EINSRTGSKLGISPL  896 (2131)
T ss_pred             hcccccCceEEEecCCCcchHHHHHH-HhhccccccchhhcCchhhhcCcchHHHHHHHhhccc-ccccccccccCcchh
Confidence            34555555555555555555555555 3443     2234455555555555555555555555 555443 13345555


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHH-----HHHHHHHc----------CCCCCCcccCCChHHHHH
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRT-VDGVTPLDILRT-----LTSDFLFK----------GAVPGLTHIEPNKLRLCL  388 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~-----~~~~~l~~----------~~~~~~~~~~~~~~~~~~  388 (506)
                      +.|+..||...++.|++.|.|+|..- .+-+|+|-+|+-     .+..||..          |..|.....-.+.+++-.
T Consensus       897 mlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~  976 (2131)
T KOG4369|consen  897 MLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGN  976 (2131)
T ss_pred             hhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccch
Confidence            55555555555555555555554432 233455555441     11222221          222333333355556666


Q ss_pred             HHHHhccCcccccc------------------------CCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccccccc
Q 010590          389 ELVQSAALVLSREE------------------------GILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSL  444 (506)
Q Consensus       389 ~Ll~~ga~~~~~~~------------------------~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~  444 (506)
                      +||..|||+|+.-.                        +|.+.+...+..|+|+|.+||--           +..+.+.+
T Consensus       977 ~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~G-----------g~lss~~i 1045 (2131)
T KOG4369|consen  977 LLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAG-----------GALSSCPI 1045 (2131)
T ss_pred             hhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccC-----------CccccchH
Confidence            66666666554311                        01123334577888999887421           12223333


Q ss_pred             ccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          445 NLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       445 ~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      +.  +..++++.+|+.-+|++.-|-..|.
T Consensus      1046 l~--~~~ad~d~qdnr~~S~~maafRKgh 1072 (2131)
T KOG4369|consen 1046 LV--SSVADADQQDNRTNSRTMAAFRKGH 1072 (2131)
T ss_pred             Hh--hcccChhhhhcccccccHHHHHhch
Confidence            44  3458899999999999999988884

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.49  E-value=5.8e-14  Score=106.87  Aligned_cols=100  Identities=23%  Similarity=0.200  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHH
Q 010590          287 LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSD  366 (506)
Q Consensus       287 t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~  366 (506)
                      --+.|++++|.++-|+..+..|- ++|..  ..|+||||+|+-.|..+++++|+..||+++.+|+.|.|||.-|+-    
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~-nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvw----   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGL-NVNEI--YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVW----   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccc-cHHHH--hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHH----
Confidence            34689999999999999999997 89876  489999999999999999999999999999999999999999986    


Q ss_pred             HHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCC
Q 010590          367 FLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNE  407 (506)
Q Consensus       367 ~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~  407 (506)
                                    .++.+++++||+.|||-..+.-+|.+.
T Consensus        77 --------------EGH~~cVklLL~~GAdrt~~~PdG~~~  103 (117)
T KOG4214|consen   77 --------------EGHRDCVKLLLQNGADRTIHAPDGTAL  103 (117)
T ss_pred             --------------HhhHHHHHHHHHcCcccceeCCCchhH
Confidence                          689999999999999999886666544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=2.1e-13  Score=127.91  Aligned_cols=124  Identities=35%  Similarity=0.421  Sum_probs=111.3

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCC-----HHHHHHHHHcCC--CCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCS-----REVVKALLELGA--ADVNYPAGP  318 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~-----~~~v~~Ll~~g~--~~v~~~~~~  318 (506)
                      ..+..+.+++|.++..+..+++++++ ..++++     +|.||||+|+..++     .+++++||+.|+  .+.+.+| .
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~-~  145 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLL-ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD-E  145 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHH-HcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC-C
Confidence            44566899999999999999999998 666644     69999999999999     999999999999  4666667 8


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA  394 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g  394 (506)
                      .|+||||+|+..|+.+++++|++.|++++.++..|.||+++|+.                  .+..+++..+++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~------------------~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAK------------------NGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcc------------------cchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999997                  67778888888876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=6.5e-13  Score=143.98  Aligned_cols=99  Identities=28%  Similarity=0.278  Sum_probs=81.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHH
Q 010590          287 LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSD  366 (506)
Q Consensus       287 t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~  366 (506)
                      +.|+.|+..|+.++|++|++.|+ ++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.    
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Ga-din~~d-~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~----  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGA-DPNCRD-YDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE----  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CCCCcC-CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----
Confidence            45788888888888888888888 888888 788888888888888888888888888888888888888888887    


Q ss_pred             HHHcCCCCCCcccCCChHHHHHHHHHh-------ccCccccccCCC
Q 010590          367 FLFKGAVPGLTHIEPNKLRLCLELVQS-------AALVLSREEGIL  405 (506)
Q Consensus       367 ~l~~~~~~~~~~~~~~~~~~~~~Ll~~-------ga~~~~~~~~~~  405 (506)
                                    .++.+++++|+++       |++++..+..|.
T Consensus       158 --------------~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~  189 (664)
T PTZ00322        158 --------------NGFREVVQLLSRHSQCHFELGANAKPDSFTGK  189 (664)
T ss_pred             --------------CCcHHHHHHHHhCCCcccccCCCCCccccCCC
Confidence                          6788888888888       566555544444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=2.9e-13  Score=96.83  Aligned_cols=54  Identities=44%  Similarity=0.599  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLL  340 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  340 (506)
                      |+||||+||..|+.+++++|++.|. ++|.+| ..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~-din~~d-~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA-DINAQD-EDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS-GTT-B--TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC-CCCCCC-CCCCCHHHHHHHccCHHHHHHHC
Confidence            6899999999999999999999999 999998 89999999999999999999986

...

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.42  E-value=3.4e-13  Score=138.93  Aligned_cols=137  Identities=18%  Similarity=0.376  Sum_probs=110.6

Q ss_pred             CCceeEEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHh
Q 010590           22 QAFSDVTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLL  100 (506)
Q Consensus        22 ~~~~Dv~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll  100 (506)
                      ...-|+.|++ +|+.++|||++|+||++||..||..-|.|+.                    .-.+.+--+..+.++.+|
T Consensus       708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~s--------------------S~t~~~~p~~~e~m~ivL  767 (1267)
T KOG0783|consen  708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESS--------------------SITVNLSPLTVEHMSIVL  767 (1267)
T ss_pred             ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhc--------------------cceeecCcchHHHHHHHH
Confidence            3344666666 7788999999999999999999998888862                    223333445699999999


Q ss_pred             hhhh-ccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 010590          101 QFLY-SGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIA  179 (506)
Q Consensus       101 ~f~Y-tg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~~L~~  179 (506)
                      +|+| +++..+-.+...                  .+|+-+++..|+++-+.+|+.+|+..+.+.+   +..++..+|.+
T Consensus       768 dylYs~d~~~~~k~~~~------------------~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl---~lk~~~~llef  826 (1267)
T KOG0783|consen  768 DYLYSDDKVELFKDLKE------------------SDFMFEILSIADQLLILELKSICEQSLLRKL---NLKTLPTLLEF  826 (1267)
T ss_pred             HHHHccchHHHHhccch------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh---cccchHHHHHH
Confidence            9999 555544322211                  3678889999999999999999999887554   78999999999


Q ss_pred             hhhhhhHHHHHHHhHHHHhc
Q 010590          180 SRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       180 a~~~~~~~L~~~cl~~i~~~  199 (506)
                      +..+.+.+|...|++|+..+
T Consensus       827 aamY~ak~L~~~C~dfic~N  846 (1267)
T KOG0783|consen  827 AAMYHAKELYSRCIDFICHN  846 (1267)
T ss_pred             HHHhhHHHHHHHHHHHHHHh
Confidence            99999999999999999865

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=7.9e-13  Score=143.33  Aligned_cols=102  Identities=28%  Similarity=0.340  Sum_probs=94.5

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV  331 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~  331 (506)
                      .+.|+.|+..|+.++++.|+ +.|+|+     +|+||||+|+..|+.++|++|+++|+ ++|.+| ..|+||||+|+..|
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL-~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga-dvn~~d-~~G~TpLh~A~~~g  159 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILL-TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA-DPTLLD-KDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC-CCCCCC-CCCCCHHHHHHHCC
Confidence            35699999999999999999 677655     58999999999999999999999999 999999 89999999999999


Q ss_pred             CHHHHHHHHHC-------CCCCCCCCCCCCcHHHHHH
Q 010590          332 SPDMVAVLLDH-------HADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       332 ~~~~v~~Ll~~-------ga~~~~~d~~g~tpLh~A~  361 (506)
                      +.+++++|+++       |++++..+..|.+|+..+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999       9999999999999888776

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=6.7e-13  Score=130.68  Aligned_cols=92  Identities=28%  Similarity=0.347  Sum_probs=61.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHH
Q 010590          289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFL  368 (506)
Q Consensus       289 Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l  368 (506)
                      |.-|+..|..++|+..+..-. |+...+ .+|-||||-|+..||.+||++||+.|+|||..|.+||||||+|+.      
T Consensus       554 LLDaaLeGEldlVq~~i~ev~-DpSqpN-dEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAAS------  625 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVT-DPSQPN-DEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAAS------  625 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhc-CCCCCC-ccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhh------
Confidence            344666667777766666655 666666 567777777777777777777777777777777777777777765      


Q ss_pred             HcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          369 FKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                                  .++.-+|+.|++.|+-|-+.
T Consensus       626 ------------CNnv~~ckqLVe~GaavfAs  645 (752)
T KOG0515|consen  626 ------------CNNVPMCKQLVESGAAVFAS  645 (752)
T ss_pred             ------------cCchHHHHHHHhccceEEee
Confidence                        56666677777766655544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.39  E-value=2.9e-12  Score=120.11  Aligned_cols=113  Identities=32%  Similarity=0.344  Sum_probs=102.1

Q ss_pred             CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCC-----HHHHHHHHHCCC---CCCCCCCCCC
Q 010590          283 LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVS-----PDMVAVLLDHHA---DPNVRTVDGV  354 (506)
Q Consensus       283 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~-----~~~v~~Ll~~ga---~~~~~d~~g~  354 (506)
                      ..+.+++|.++..+...++++|+..|+ +++.++ ..|.||||+|+..++     .+++++|++.|+   +.+.+|..|+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGA-DVNAKD-ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCC-Cccccc-CCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            347899999999999999999999999 999998 999999999999999     999999999999   6666799999


Q ss_pred             cHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCc
Q 010590          355 TPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSE  426 (506)
Q Consensus       355 tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~  426 (506)
                      ||||+|+.                  .++.+++..|++.|++++.+           +..|.|+++.++...
T Consensus       149 tpl~~A~~------------------~~~~~~~~~ll~~~~~~~~~-----------~~~g~t~l~~a~~~~  191 (235)
T COG0666         149 TPLHWAAL------------------NGDADIVELLLEAGADPNSR-----------NSYGVTALDPAAKNG  191 (235)
T ss_pred             chhHHHHH------------------cCchHHHHHHHhcCCCCccc-----------ccCCCcchhhhcccc
Confidence            99999997                  67779999999999999988           567778888885433

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.34  E-value=2.5e-12  Score=91.97  Aligned_cols=54  Identities=37%  Similarity=0.537  Sum_probs=45.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHH
Q 010590          320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELV  391 (506)
Q Consensus       320 g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll  391 (506)
                      |+||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+.                  .++.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~------------------~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAK------------------NGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHH------------------TT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------------ccCHHHHHHHC
Confidence            7899999999999999999999999999999999999999998                  78889988876

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=1.3e-11  Score=113.29  Aligned_cols=108  Identities=26%  Similarity=0.204  Sum_probs=98.5

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHh----cCCCCCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHh
Q 010590          255 QKIRRMRRALDSSDVELVKLMVM----GEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM  330 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~----~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~  330 (506)
                      .-..||..++..|+.+-...||.    -+..|.+|+|+|..|+..|+.++|++||+.|+ |||......+.||||+|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~ga-DvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGA-DVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCC-CcCcccccccccHHHHHHHc
Confidence            45789999999999999999983    23457789999999999999999999999999 99988767899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Q 010590          331 VSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       331 ~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~  363 (506)
                      |+.++.++|++.|+.+...|.-|+|+-..|+-+
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFV  122 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFV  122 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHh
Confidence            999999999999999999999999999999853

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.3e-12  Score=124.46  Aligned_cols=102  Identities=29%  Similarity=0.295  Sum_probs=88.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHhc----CCCCCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCH
Q 010590          258 RRMRRALDSSDVELVKLMVMG----EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSP  333 (506)
Q Consensus       258 t~L~~A~~~g~~~~v~~Ll~~----~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~  333 (506)
                      -.|.-|+..|.+++|+-.+.+    ...|-.|-|+||-|+-.||.+||++||+.|+ +||..| .+||||||+|+..++.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ga-nVNa~D-SdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGA-NVNAAD-SDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCC-cccCcc-CCCCchhhhhhhcCch
Confidence            344568999999999999821    2335579999999999999999999999999 999999 8999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCC-CCCCcHHHHHH
Q 010590          334 DMVAVLLDHHADPNVRT-VDGVTPLDILR  361 (506)
Q Consensus       334 ~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~  361 (506)
                      .+++.|++.|+-|-+.. .++.||..-+-
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcc
Confidence            99999999999886654 57888877553

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.30  E-value=2.1e-11  Score=116.91  Aligned_cols=166  Identities=18%  Similarity=0.178  Sum_probs=134.6

Q ss_pred             HHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCC
Q 010590           12 LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSV   91 (506)
Q Consensus        12 ~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i   91 (506)
                      --....|+.++.-+||++.+=|++.+.||..| .+|+||++||.|-|+|+.++-                -+-+|.=+.|
T Consensus        57 kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~i----------------IqleI~Dp~I  119 (488)
T KOG4682|consen   57 KYIYQNLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNI----------------IQLEIPDPNI  119 (488)
T ss_pred             HHHHHHHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCce----------------EEEEcCCCcc
Confidence            34567788899999999999999999999999 579999999999999984211                1122333469


Q ss_pred             CHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHH
Q 010590           92 GYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIE  171 (506)
Q Consensus        92 ~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~  171 (506)
                      +..+|..++.=+|.+++++....                       +..++.+|..++++.+.+-|.+-+.+-   +..+
T Consensus       120 d~~al~~a~gsLY~dEveI~l~d-----------------------v~gvlAaA~~lqldgl~qrC~evMie~---lspk  173 (488)
T KOG4682|consen  120 DVVALQVAFGSLYRDEVEIKLSD-----------------------VVGVLAAACLLQLDGLIQRCGEVMIET---LSPK  173 (488)
T ss_pred             cHHHHHHHHhhhhhhheeccHHH-----------------------HHHHHHHHHHHHHhhHHHHHHHHHHHh---cChh
Confidence            99999999999999999997554                       577999999999999999999988755   4899


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhHHHHhcCC--ChhhhhccchHHHHHHHHh
Q 010590          172 DVMKVLIASRKQDMHQLWTTCSHLVAKSGL--PPEVLAKHLPIEVVAKIED  220 (506)
Q Consensus       172 ~v~~~L~~a~~~~~~~L~~~cl~~i~~~~~--~~~~l~~~L~~~~~~~l~~  220 (506)
                      +++..+..+.+++..++++.|++++..+-.  ....+.+.++.++...+..
T Consensus       174 ta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~~ll~  224 (488)
T KOG4682|consen  174 TACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMKQLLG  224 (488)
T ss_pred             hhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHHHHhC
Confidence            999999999999999999999999886622  1222556666666666543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.23  E-value=9e-12  Score=89.62  Aligned_cols=44  Identities=41%  Similarity=0.520  Sum_probs=30.5

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      |..|.||||+||..|+.++|++|++.|+ |++.+| ..|+||||+|
T Consensus        13 d~~G~T~LH~A~~~g~~~~v~~Ll~~g~-d~~~~d-~~G~Tpl~~A   56 (56)
T PF13857_consen   13 DKYGNTPLHWAARYGHSEVVRLLLQNGA-DPNAKD-KDGQTPLHYA   56 (56)
T ss_dssp             -TTS--HHHHHHHHT-HHHHHHHHHCT---TT----TTS--HHHH-
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCcC-CCCCCc-CCCCCHHHhC
Confidence            3469999999999999999999999999 999999 8999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.20  E-value=3.8e-11  Score=110.37  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=82.6

Q ss_pred             ccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCCC------ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          248 AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLD------EALALHYAVENCSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       248 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~------g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      .....|..|+|+|..|+..|+.+.|++|| +.|+|+|      +.||||+|+.+|+.+++++|++.|+ .....| .-|+
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll-~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa-~~~~vN-svgr  113 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLL-ELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGA-RMYLVN-SVGR  113 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHH-HhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccC-cccccc-chhh
Confidence            34567999999999999999999999999 7888885      6899999999999999999999999 999998 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHH
Q 010590          322 TPLHIAAEMVSPDMVAVLL  340 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll  340 (506)
                      |+-.+|+.-|+.++|..+-
T Consensus       114 TAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  114 TAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             hHHHHHHHhcchHHHHHHh
Confidence            9999999999999987753

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.97  E-value=2.2e-09  Score=105.50  Aligned_cols=75  Identities=35%  Similarity=0.445  Sum_probs=70.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          287 LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       287 t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      --||..++.|+.+++-.||..|| ++|..+...|.||||.|++.|...-+++|+-+|||++..|.+|.||+.+|..
T Consensus       135 rQLhasvRt~nlet~LRll~lGA-~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGA-QANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHccc-ccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHh
Confidence            36899999999999999999999 9999998899999999999999999999999999999999999999999985

>PF13606 Ank_3: Ankyrin repeat

Probab=98.86  E-value=3.1e-09  Score=65.36  Aligned_cols=30  Identities=47%  Similarity=0.660  Sum_probs=21.9

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNV  348 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~  348 (506)
                      +|+||||+||+.|+.+++++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            467777777777777777777777777763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.81  E-value=2.3e-09  Score=111.24  Aligned_cols=80  Identities=28%  Similarity=0.353  Sum_probs=74.5

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      |.-|+|+||+|+..+..++++.||.+|+ |++.+|...|+||||-|..+|+++++-+||.+|+...++|++|..||...+
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhGi-dv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHGI-DVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcCc-eeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHh
Confidence            3459999999999999999999999999 999999888999999999999999999999999999999999999999888


Q ss_pred             H
Q 010590          362 T  362 (506)
Q Consensus       362 ~  362 (506)
                      +
T Consensus       128 r  128 (1267)
T KOG0783|consen  128 R  128 (1267)
T ss_pred             h
Confidence            5

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.80  E-value=7e-09  Score=65.67  Aligned_cols=33  Identities=52%  Similarity=0.721  Sum_probs=24.0

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV  351 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~  351 (506)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            367777777777777777777777777777653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.71  E-value=1.6e-08  Score=62.17  Aligned_cols=30  Identities=50%  Similarity=0.585  Sum_probs=26.5

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNY  314 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~  314 (506)
                      +|+||||+||..|+.++|++||++|+ |||.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga-dvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA-DVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC-CCCC
Confidence            58899999999999999999999998 8873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.63  E-value=4.2e-08  Score=62.06  Aligned_cols=32  Identities=41%  Similarity=0.600  Sum_probs=30.1

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPA  316 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~  316 (506)
                      +|+||||+|+..|+.+++++||++|+ +++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA-DINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS-CTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC-CCCCCC
Confidence            58999999999999999999999999 999887

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.60  E-value=5.1e-08  Score=95.68  Aligned_cols=91  Identities=23%  Similarity=0.296  Sum_probs=82.7

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHH
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH-HADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~  363 (506)
                      +..++++|++.|.+..++.+.-.|. |++.+| .+.+|+||.||..|+.+++++|++. +.|++.+|.+|+|||.-|.. 
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~-D~~~~D-yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~-  582 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGM-DLETKD-YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH-  582 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcc-cccccc-cccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh-
Confidence            4578999999999999999999999 999999 9999999999999999999999997 89999999999999999987 


Q ss_pred             HHHHHHcCCCCCCcccCCChHHHHHHHHHhcc
Q 010590          364 TSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA  395 (506)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga  395 (506)
                                       -++.+++++|-+...
T Consensus       583 -----------------F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 -----------------FKHKEVVKLLEEAQY  597 (622)
T ss_pred             -----------------cCcHHHHHHHHHHhc
Confidence                             577888777766544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.56  E-value=1.4e-07  Score=94.70  Aligned_cols=84  Identities=26%  Similarity=0.334  Sum_probs=62.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCC---------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          259 RMRRALDSSDVELVKLMVMGEGL---------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       259 ~L~~A~~~g~~~~v~~Ll~~~~~---------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      -|.-|+...++..+-+|| .+|.         +-+|+|+||+||..|++.+.++|+-+|+ |+..+| ..|+|||.||-+
T Consensus       627 qLl~A~~~~Dl~t~~lLL-Ahg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~-dv~~rd-a~g~t~l~yar~  703 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLL-AHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV-DVMARD-AHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHH-hccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc-cceecc-cCCchhhhhHhh
Confidence            455666677777777777 4442         2246788888888888888888888888 888887 788888888888


Q ss_pred             hCCHHHHHHHHHCCCC
Q 010590          330 MVSPDMVAVLLDHHAD  345 (506)
Q Consensus       330 ~~~~~~v~~Ll~~ga~  345 (506)
                      .|..+++.+|+++|+.
T Consensus       704 a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCP  719 (749)
T ss_pred             cccHHHHHHHHHcCCC
Confidence            8888888888887764

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.52  E-value=2.3e-07  Score=92.75  Aligned_cols=55  Identities=31%  Similarity=0.388  Sum_probs=27.4

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLL  340 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll  340 (506)
                      .|.||||+|+.-|+.++++.|+.+|+ ++..+| +.||+|||-|+..|+.+++..++
T Consensus        54 ~g~TpLhlAV~Lg~~~~a~~Ll~a~A-dv~~kN-~~gWs~L~EAv~~g~~q~i~~vl  108 (560)
T KOG0522|consen   54 PGRTPLHLAVRLGHVEAARILLSAGA-DVSIKN-NEGWSPLHEAVSTGNEQIITEVL  108 (560)
T ss_pred             CCCccHHHHHHhcCHHHHHHHHhcCC-Cccccc-cccccHHHHHHHcCCHHHHHHHH
Confidence            34555555555555555555555555 555554 45555555555555544444443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.49  E-value=3.7e-07  Score=90.19  Aligned_cols=89  Identities=17%  Similarity=0.238  Sum_probs=74.7

Q ss_pred             ccCCccccH------HHHHHHhcCCHHHHHHHHhcCCCCC------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 010590          250 ADLEDQKIR------RMRRALDSSDVELVKLMVMGEGLNL------DEALALHYAVENCSREVVKALLELGAADVNYPAG  317 (506)
Q Consensus       250 ~~~~~~g~t------~L~~A~~~g~~~~v~~Ll~~~~~d~------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~  317 (506)
                      ...|+.|.+      -||-.++.|+.++.--|| .-|+++      .|.||||.|++.|+..-+++|+-+|| |++..| 
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll-~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA-D~~a~d-  197 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLL-SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA-DPGAQD-  197 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHH-HcccccCCCCcccCCchhHHHHhccchhhhhHHhhccC-CCCCCC-
Confidence            344555544      689999999998777777 555554      39999999999999999999999999 999999 


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHH
Q 010590          318 PAGKTPLHIAAEMVSPDMVAVLLD  341 (506)
Q Consensus       318 ~~g~tpLh~A~~~~~~~~v~~Ll~  341 (506)
                      .+|.||+-+|-..||-++.+-|++
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHHH
Confidence            899999999999999887766543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.48  E-value=3.8e-07  Score=91.65  Aligned_cols=92  Identities=25%  Similarity=0.187  Sum_probs=77.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCCCC-CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHH
Q 010590          288 ALHYAVENCSREVVKALLELGAA-DVNYPA-GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTS  365 (506)
Q Consensus       288 ~Lh~A~~~g~~~~v~~Ll~~g~~-~v~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~  365 (506)
                      -|..|+.......+-+||.+|.. .+|-.. +..|+||||+||+.|+..+.++|+-+|+|+-++|.+|+|||.||.+   
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~---  703 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQ---  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhh---
Confidence            56778888888889999999851 233222 2578999999999999999999999999999999999999999997   


Q ss_pred             HHHHcCCCCCCcccCCChHHHHHHHHHhccCc
Q 010590          366 DFLFKGAVPGLTHIEPNKLRLCLELVQSAALV  397 (506)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~  397 (506)
                                     .+..+++..|+++|+.-
T Consensus       704 ---------------a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  704 ---------------AGSQECIDVLLQYGCPD  720 (749)
T ss_pred             ---------------cccHHHHHHHHHcCCCc
Confidence                           67888899999999743

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.46  E-value=1.5e-07  Score=92.43  Aligned_cols=92  Identities=25%  Similarity=0.304  Sum_probs=79.7

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHH-hcCC---CCCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMV-MGEG---LNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~---~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      ..+.++..++++|++.|++..++-+. ...+   .|.+.+|+||.|+..|+.++||+||+.-..+++.+| ..|+|||--
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD-Rw~rtPlDd  579 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD-RWGRTPLDD  579 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh-ccCCCcchH
Confidence            45567788999999999999998876 3222   355789999999999999999999997655999999 999999999


Q ss_pred             HHHhCCHHHHHHHHHCC
Q 010590          327 AAEMVSPDMVAVLLDHH  343 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~g  343 (506)
                      |...+|.+++++|-+.-
T Consensus       580 A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHHHHHHHHh
Confidence            99999999999998753

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.43  E-value=4.2e-07  Score=90.94  Aligned_cols=74  Identities=26%  Similarity=0.464  Sum_probs=61.6

Q ss_pred             HHHHHHHHcCCHHHHHH-H-HHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          287 LALHYAVENCSREVVKA-L-LELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       287 t~Lh~A~~~g~~~~v~~-L-l~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      -|||+++.....+-... | .+.+. .|+..| ..|+||||+|+..|+...++.|+..||++.++|++||+|||-|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~-~id~~D-~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSL-VIDRRD-PPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhc-eecccc-CCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            35888888777665443 3 33344 788888 899999999999999999999999999999999999999999983

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.38  E-value=3.5e-07  Score=83.84  Aligned_cols=140  Identities=19%  Similarity=0.249  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHhcCCCceeEEEEE--CC--------------eEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCC
Q 010590            9 SLSLDYLNLLINGQAFSDVTFSV--EG--------------RLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRIN   72 (506)
Q Consensus         9 ~~~~~~l~~l~~~~~~~Dv~~~v--~~--------------~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~   72 (506)
                      ..+-..++.|+.+...-|+.|..  +|              .+|+||++|.|+||+|||.++.....|......  +   
T Consensus       220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sd--r---  294 (401)
T KOG2838|consen  220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSD--R---  294 (401)
T ss_pred             hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhccccccc--c---
Confidence            45566788899988888877653  33              369999999999999999999665544311110  0   


Q ss_pred             CCCCCCCCCCCceEEcCC-CCHHHHH-HHhhhhhccceeccCCCCCCcCCccccCccCcc---------chhHH--HHHH
Q 010590           73 QGPPSPASRPTGVIPVNS-VGYEVFL-LLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTH---------CTSAV--DLAL  139 (506)
Q Consensus        73 ~~~~~~~~~~~~~i~l~~-i~~~~~~-~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~---------c~~~~--~~~~  139 (506)
                           -- +....|.+++ |=|..|. .+++++||+.++.+...     -|++..- .+.         --+..  .-+.
T Consensus       295 -----tl-r~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~h-----kce~Sig-SLSeakAitnaGkpn~~qaaeAl  362 (401)
T KOG2838|consen  295 -----TL-RRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAH-----KCEDSIG-SLSEAKAITNAGKPNDLQAAEAL  362 (401)
T ss_pred             -----cc-cCCceeechhhhcchhhhhhhhhhheecccchhhcc-----cCCcccc-cHHHHHHHHcCCCCchhhHHHHH
Confidence                 00 1235666764 5555554 56799999999987421     1222111 000         00011  1147


Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHH
Q 010590          140 DTLAAARYFGVEQLALLTQKQLANMV  165 (506)
Q Consensus       140 ~L~~~A~~~~~~~l~~l~~~~l~~~l  165 (506)
                      +|+..|..|.++.|.+.|+.-+...+
T Consensus       363 eL~~IAlFfEfemLaQa~e~Vir~ac  388 (401)
T KOG2838|consen  363 ELIEIALFFEFEMLAQACEDVIRKAC  388 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            78888888888888888877665444

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.36  E-value=1.6e-06  Score=86.95  Aligned_cols=101  Identities=28%  Similarity=0.342  Sum_probs=81.6

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCChHHHHHHHhCCH
Q 010590          260 MRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAAD-VNYPAGPAGKTPLHIAAEMVSP  333 (506)
Q Consensus       260 L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-v~~~~~~~g~tpLh~A~~~~~~  333 (506)
                      +..|+..++.--++-+- .+|-     +.+..|.||+|+..|+.++|+|+|++|... ++..| ..|.|+||-|+..++-
T Consensus       870 il~av~~~D~~klqE~h-~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~d-e~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETH-LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMAD-ETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHH-hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHh-hhhhHHHHHHHHhcch
Confidence            45566666643333332 2332     345689999999999999999999999722 56677 8999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          334 DMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       334 ~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      .+.++|++.||.....|..|.||-.-|-+
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqq  976 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQ  976 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHh
Confidence            99999999999999999999999998875

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.19  E-value=1.3e-06  Score=95.02  Aligned_cols=76  Identities=39%  Similarity=0.493  Sum_probs=74.2

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      |.|+||.|+..|..-++++||+.|+ ++|..| ..|+||||.+...|+...+.+|+++||+.++.|.+|.+||++|..
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga-~vn~~d-~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGA-DVNALD-SKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCC-cchhhh-ccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            6899999999999999999999999 999999 999999999999999999999999999999999999999999986

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.16  E-value=5.1e-06  Score=83.44  Aligned_cols=92  Identities=25%  Similarity=0.302  Sum_probs=82.1

Q ss_pred             ccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 010590          248 AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAG  320 (506)
Q Consensus       248 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g  320 (506)
                      .....+..-.+.||+|+..|+-++|+++| .+|.       +.+|.|+||-|+..++..++.+|++.|+ .+...| ..|
T Consensus       891 ~ll~~~~~~~sllh~a~~tg~~eivkyil-dh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdaga-sl~ktd-~kg  967 (1004)
T KOG0782|consen  891 SLLIQGPDHCSLLHYAAKTGNGEIVKYIL-DHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGA-SLRKTD-SKG  967 (1004)
T ss_pred             ceEeeCcchhhHHHHHHhcCChHHHHHHH-hcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcch-hheecc-cCC
Confidence            34455677799999999999999999999 5553       5579999999999999999999999999 888888 899


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHC
Q 010590          321 KTPLHIAAEMVSPDMVAVLLDH  342 (506)
Q Consensus       321 ~tpLh~A~~~~~~~~v~~Ll~~  342 (506)
                      .||-.-|-+.|..+++.||-.+
T Consensus       968 ~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  968 KTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             CChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999765

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.11  E-value=7.2e-06  Score=78.79  Aligned_cols=123  Identities=20%  Similarity=0.211  Sum_probs=81.5

Q ss_pred             eEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhccceeccCC
Q 010590           34 RLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQ  113 (506)
Q Consensus        34 ~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~  113 (506)
                      ..+|||++++ .|..||+.||.+++.|+..+.                .-....++.....+++.+++|+|+++.++.  
T Consensus       301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~----------------~~p~lslp~~~~~vveI~lr~lY~d~tdi~--  361 (516)
T KOG0511|consen  301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVND----------------TRPGLSLPSLADVVVEIDLRNLYCDQTDII--  361 (516)
T ss_pred             ccccHHHHHH-HHHHHHHHHhccchhhhcCCc----------------cccccccchHHHHHHHHHHHHhhcccccch--
Confidence            4599999999 689999999999999963211                123456777889999999999999998775  


Q ss_pred             CCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHH--H-HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHHH
Q 010590          114 KHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVE--Q-LALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWT  190 (506)
Q Consensus       114 ~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~--~-l~~l~~~~l~~~l~~~~~~~v~~~L~~a~~~~~~~L~~  190 (506)
                                           .+.|.+++-.|++..+.  . |+.+....+.+..+-++.=+++.++..+......++-+
T Consensus       362 ---------------------~~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEq  420 (516)
T KOG0511|consen  362 ---------------------FDVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQ  420 (516)
T ss_pred             ---------------------HHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Confidence                                 34577888888887664  2 44444444444443333334555555444444444444


Q ss_pred             HHhHHH
Q 010590          191 TCSHLV  196 (506)
Q Consensus       191 ~cl~~i  196 (506)
                      ....++
T Consensus       421 fa~~~~  426 (516)
T KOG0511|consen  421 FAETHE  426 (516)
T ss_pred             HHHHHH
Confidence            443333

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.08  E-value=2e-06  Score=79.04  Aligned_cols=85  Identities=20%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEE
Q 010590            8 RSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIP   87 (506)
Q Consensus         8 ~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~   87 (506)
                      ...++..+...++...+.||-|+...+-|||||++||+|+|||+.+..........                  .--.|.
T Consensus       114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae------------------~i~dik  175 (401)
T KOG2838|consen  114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAE------------------DICDIK  175 (401)
T ss_pred             hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchh------------------hhhhhh
Confidence            45677888889999999999999999999999999999999999888654322100                  012455


Q ss_pred             cCCCCHHHHHHHhhhhhccceec
Q 010590           88 VNSVGYEVFLLLLQFLYSGQVSI  110 (506)
Q Consensus        88 l~~i~~~~~~~ll~f~Ytg~~~~  110 (506)
                      .-+++-++|+.+|+|+|||+...
T Consensus       176 ~ag~dm~~feafLh~l~tgEfgm  198 (401)
T KOG2838|consen  176 FAGFDMDAFEAFLHSLITGEFGM  198 (401)
T ss_pred             hhccChHHHHHHHHHHHhcccch
Confidence            56899999999999999998654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.01  E-value=1.9e-05  Score=83.73  Aligned_cols=120  Identities=23%  Similarity=0.271  Sum_probs=98.0

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCC---CC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGL---NL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..+.--...|+..|+...|+..+.+...   |+     -|+++|+.|+.+.+.+++++|++++. .+  .|      +|.
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~-~~--gd------ALL   93 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS-EE--GD------ALL   93 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc-cc--ch------HHH
Confidence            4455567889999999999999954433   33     38999999999999999999999876 44  33      999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCC----------CCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhcc
Q 010590          326 IAAEMVSPDMVAVLLDHHADP----------NVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA  395 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~----------~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga  395 (506)
                      +|+..|..++|++++.+-...          ...-..+.|||.+||.                  .++.++++.||.+|+
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh------------------~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAH------------------LNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHH------------------hcchHHHHHHHHcCC
Confidence            999999999999999873322          1233467899999998                  799999999999999


Q ss_pred             Ccccc
Q 010590          396 LVLSR  400 (506)
Q Consensus       396 ~~~~~  400 (506)
                      .+...
T Consensus       156 ~i~~P  160 (822)
T KOG3609|consen  156 CIPIP  160 (822)
T ss_pred             CCCCC
Confidence            98765

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.01  E-value=1.5e-05  Score=76.62  Aligned_cols=80  Identities=28%  Similarity=0.302  Sum_probs=48.4

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCCC-----ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNLD-----EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV  331 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~~-----g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~  331 (506)
                      .--|..||+.|+.+.|+.|+ +.|+|+|     ..+||.+|+..||.++||+||++||  +-.+|.-.|.-. |+++.+.
T Consensus        37 f~elceacR~GD~d~v~~LV-etgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA--iC~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLV-ETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA--ICSRDTFDGDRC-HYGALND  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHH-HhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC--cccccccCcchh-hhhhhhH
Confidence            34567777777777777777 5776665     4577777777777777777777776  333443444443 3333332


Q ss_pred             CHHHHHHHHHC
Q 010590          332 SPDMVAVLLDH  342 (506)
Q Consensus       332 ~~~~v~~Ll~~  342 (506)
                        .+-++|+++
T Consensus       113 --~IR~mllsy  121 (516)
T KOG0511|consen  113 --RIRRMLLSY  121 (516)
T ss_pred             --HHHHHHHHH
Confidence              333445544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.98  E-value=2.9e-05  Score=67.97  Aligned_cols=51  Identities=24%  Similarity=0.167  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHH
Q 010590          311 DVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       311 ~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~  362 (506)
                      +||.+| ..|||||+.|+..|..+.+.+|+.+| ++|-..|..|.+++.+|-+
T Consensus         4 ~in~rD-~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek   55 (223)
T KOG2384|consen    4 NINARD-AFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEK   55 (223)
T ss_pred             Cccchh-hhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHh
Confidence            566666 66666666666666666666666666 6666666666666666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.90  E-value=1.1e-05  Score=87.38  Aligned_cols=109  Identities=22%  Similarity=0.228  Sum_probs=86.2

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCChHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLE-LGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~v~~~~~~~g~tpL  324 (506)
                      .....|++.+|+++..+....++.+++.++.     |.+|.-.+|+ |..++.+++-+|+. .|. .++++| ..|||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~-ai~i~D-~~G~tpL  645 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGV-AIDIRD-RNGWTPL  645 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccc-cccccc-CCCCccc
Confidence            3467899999999999999999999953232     4456677777 66667777666654 455 899999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHH
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPN------VRTVDGVTPLDILRT  362 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~------~~d~~g~tpLh~A~~  362 (506)
                      |||+..|+..++..|++.|++..      ..+..|.|+-.+|..
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s  689 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA  689 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence            99999999999999998877643      334568888888874

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.82  E-value=7.3e-05  Score=65.54  Aligned_cols=80  Identities=18%  Similarity=0.073  Sum_probs=65.9

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~  363 (506)
                      -|||||+.|+..|..+.|.+|+.+|+..|...| ..|.+++.+|-..|..++|+.|-+.-.+-...++...++--.+|++
T Consensus        11 fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d-~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e~lfyCE~   89 (223)
T KOG2384|consen   11 FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTD-ESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDEALFYCEV   89 (223)
T ss_pred             hcchHHHHHhhhcchhHHHHHhccCcccccccc-cccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCCccchhhh
Confidence            499999999999999999999999944999998 8999999999999999999999998666555555444444445544


Q ss_pred             H
Q 010590          364 T  364 (506)
Q Consensus       364 ~  364 (506)
                      .
T Consensus        90 C   90 (223)
T KOG2384|consen   90 C   90 (223)
T ss_pred             h
Confidence            3

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.80  E-value=2.3e-05  Score=84.91  Aligned_cols=165  Identities=14%  Similarity=0.115  Sum_probs=111.1

Q ss_pred             CCCCCChHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHH
Q 010590          280 GLNLDEALALHYAVENCSREVVKALLEL-GAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD-HHADPNVRTVDGVTPL  357 (506)
Q Consensus       280 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpL  357 (506)
                      .....|+|-||+++..+....++.+++. |. .....| ..|.-.+|+ |..++.+.+-+|+. .|..++++|..|||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~-~~~eld-~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGS-GDLELD-RDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhccccc-Cchhhc-ccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            3455799999999999999999999997 66 556666 788888888 55555666666654 6999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCc
Q 010590          358 DILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSA  437 (506)
Q Consensus       358 h~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~  437 (506)
                      |||+.                  .++.+++..|++-|++....     +.+..-.-.|.|+--++-.+.......+..+ 
T Consensus       646 ~wAa~------------------~G~e~l~a~l~~lga~~~~~-----tdps~~~p~g~ta~~la~s~g~~gia~~lse-  701 (975)
T KOG0520|consen  646 HWAAF------------------RGREKLVASLIELGADPGAV-----TDPSPETPGGKTAADLARANGHKGIAGYLSE-  701 (975)
T ss_pred             chHhh------------------cCHHHHHHHHHHhccccccc-----cCCCCCCCCCCchhhhhhcccccchHHHHhh-
Confidence            99998                  78999999999999888744     3333334456666655521111111111100 


Q ss_pred             cccccccccCCCcceeeccCCCCCCCcchhhhhcCCCCC
Q 010590          438 TINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRM  476 (506)
Q Consensus       438 ~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~~~  476 (506)
                       ..+......    .-++.....++||.-=|.+.-+++.
T Consensus       702 -~~L~~~~~~----~~~~~~~~s~~~~~~~~~~t~~e~s  735 (975)
T KOG0520|consen  702 -KALSAHLSN----LELADPNLSADSEEDKAEKTSSEGS  735 (975)
T ss_pred             -hHHHHHHhh----ccccccccCCCchhhhhhhccCCCC
Confidence             011111111    3344444558888888888876665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.70  E-value=9.2e-05  Score=78.76  Aligned_cols=97  Identities=23%  Similarity=0.197  Sum_probs=80.0

Q ss_pred             ccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCCCChHHHHHHHHcCCHHHHHHHHHcCCCCC---------CCCCCC
Q 010590          248 AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADV---------NYPAGP  318 (506)
Q Consensus       248 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v---------~~~~~~  318 (506)
                      .....|.-|+++|+.|+.+.+.+++++|+ +.+...  .-+|.+|+..|..++|+.++.+-. ..         +...-.
T Consensus        54 ninc~d~lGr~al~iai~nenle~~eLLl-~~~~~~--gdALL~aI~~~~v~~VE~ll~~~~-~~~~~~~~~d~~~~~ft  129 (822)
T KOG3609|consen   54 NINCRDPLGRLALHIAIDNENLELQELLL-DTSSEE--GDALLLAIAVGSVPLVELLLVHFV-DAPYLERSGDANSPHFT  129 (822)
T ss_pred             chhccChHhhhceecccccccHHHHHHHh-cCcccc--chHHHHHHHHHHHHHHHHHHhccc-ccchhccccccCcccCC
Confidence            34456888999999999999999999999 666555  568999999999999999998754 21         111124


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCC
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNV  348 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~  348 (506)
                      .+-|||.+||..++.+|+++||.+|+.+..
T Consensus       130 ~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  130 PDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             CCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            678999999999999999999999998643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.56  E-value=7.4e-05  Score=81.54  Aligned_cols=84  Identities=30%  Similarity=0.387  Sum_probs=75.1

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCCCCC-----ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGLNLD-----EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~-----g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      ..|.|+||.|+..|..-++++|+ .+|.++|     |+||||.+...|+...+..|+++|+ +.+..+ ..|.+||++|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll-~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a-~~~a~~-~~~~~~l~~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLL-QNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGA-DPNAFD-PDGKLPLDIAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHH-hcCCcchhhhccCCCcchhhhhhcccchhhhhccccc-cccccC-ccCcchhhHHh
Confidence            45799999999999999999999 7777664     9999999999999999999999999 999999 89999999998


Q ss_pred             HhCCHHHHHHHH
Q 010590          329 EMVSPDMVAVLL  340 (506)
Q Consensus       329 ~~~~~~~v~~Ll  340 (506)
                      ...+.+++-+|.
T Consensus       731 ~~~~~d~~~l~~  742 (785)
T KOG0521|consen  731 EAANADIVLLLR  742 (785)
T ss_pred             hhccccHHHHHh
Confidence            777777765554

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00076  Score=62.22  Aligned_cols=98  Identities=20%  Similarity=0.325  Sum_probs=78.9

Q ss_pred             EEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhcc
Q 010590           27 VTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSG  106 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Ytg  106 (506)
                      |.+-|||+.|...+.=|.--..||++||..++.-..-                  ...-|-| |=+|.-|..+|.||-.|
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d------------------~s~~IFI-DRSpKHF~~ILNfmRdG   67 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKD------------------ESGCIFI-DRSPKHFDTILNFMRDG   67 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccC------------------CcCcEEe-cCChhHHHHHHHhhhcc
Confidence            5578999999999999999999999999887641100                  1234555 55899999999999999


Q ss_pred             ceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 010590          107 QVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANM  164 (506)
Q Consensus       107 ~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~  164 (506)
                      .+.++...                     .-..+|+..|..|.++.|..+|+..+...
T Consensus        68 dv~LPe~~---------------------kel~El~~EA~fYlL~~Lv~~C~~~i~~~  104 (230)
T KOG2716|consen   68 DVDLPESE---------------------KELKELLREAEFYLLDGLVELCQSAIARL  104 (230)
T ss_pred             cccCccch---------------------HHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence            99876543                     33678999999999999999999976544

>smart00248 ANK ankyrin repeats

Probab=97.02  E-value=0.0012  Score=38.95  Aligned_cols=28  Identities=54%  Similarity=0.750  Sum_probs=18.3

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC
Q 010590          320 GKTPLHIAAEMVSPDMVAVLLDHHADPN  347 (506)
Q Consensus       320 g~tpLh~A~~~~~~~~v~~Ll~~ga~~~  347 (506)
                      |.||||+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.81  E-value=0.0014  Score=65.68  Aligned_cols=63  Identities=25%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             HHHHHHHHHcCCCCCCCCC-----CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          298 REVVKALLELGAADVNYPA-----GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       298 ~~~v~~Ll~~g~~~v~~~~-----~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      ...+++|.+.+. +.|..-     +..-.|+||+|+..|..++|.+||+.|+|+.++|..|.||..++.
T Consensus       404 p~~ie~lken~l-sgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLL-SGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCC-cccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            557788888877 665421     123568889999888888888888888888888888999888887

>smart00248 ANK ankyrin repeats

Probab=96.66  E-value=0.0029  Score=37.17  Aligned_cols=28  Identities=54%  Similarity=0.665  Sum_probs=20.9

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVN  313 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~  313 (506)
                      |.||+|+|+..++.+++++|++.|. +++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~-~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA-DIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC-CCC
Confidence            5677888877778888888777776 554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.0024  Score=62.85  Aligned_cols=123  Identities=19%  Similarity=0.125  Sum_probs=90.9

Q ss_pred             CeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhccceeccC
Q 010590           33 GRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVP  112 (506)
Q Consensus        33 ~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Ytg~~~~~~  112 (506)
                      +..+.+|+++++++|+.|+.|+.....+.                    ....+.+.+.++..++.+..|.|+..--...
T Consensus       109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~--------------------~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~  168 (297)
T KOG1987|consen  109 NGFLVAHKLVLVARSEVFEAMGKSDVFKE--------------------SSKLITLLEEKPEVLEALNGFQVLPSQVSSV  168 (297)
T ss_pred             CcEEEcCceEEEeeecceeeecccccchh--------------------ccccccccccchhhHhhhceEEEeccchHHH
Confidence            56699999999999999999998765443                    2345588899999999999999995432211


Q ss_pred             CCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHH
Q 010590          113 QKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTC  192 (506)
Q Consensus       113 ~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~~L~~a~~~~~~~L~~~c  192 (506)
                      ...                    ..-..++.++.+++...++..|...+...+   ...++...+..+..+....+...|
T Consensus       169 ~~~--------------------~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~~~~  225 (297)
T KOG1987|consen  169 ERI--------------------FEKHPDLAAAFKYKNRHLKLACMPVLLSLI---ETLNVSQSLQEASNYDLKEAKSAL  225 (297)
T ss_pred             HHh--------------------hcCChhhhhccccccHHHHHHHHHHHHHHH---HhhhhcccHHHhchhHHHHHHHHH
Confidence            100                    000257789999999999999999987665   455555667777777777788887


Q ss_pred             hHHHHh
Q 010590          193 SHLVAK  198 (506)
Q Consensus       193 l~~i~~  198 (506)
                      ..++..
T Consensus       226 ~~~~~~  231 (297)
T KOG1987|consen  226 TYVIAA  231 (297)
T ss_pred             HHHHhc
Confidence            766654

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=96.51  E-value=0.004  Score=49.69  Aligned_cols=86  Identities=21%  Similarity=0.413  Sum_probs=60.3

Q ss_pred             EEEEECCeEEeeeehhhc-ccCHHHHHhhCCC-CCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhh
Q 010590           27 VTFSVEGRLVHAHRCILA-ARSLFFRKFFCGP-DPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLY  104 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLa-a~S~yF~~~f~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Y  104 (506)
                      |+|.|||+.|..-+..|. ....+|..||.+. .....                  .....+-+ +=+|..|+.||+|+.
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~------------------~~~~~~fi-DRdp~~F~~IL~ylr   61 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYD------------------DDDGEYFI-DRDPELFEYILNYLR   61 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEE------------------TTTTEEEE-SS-HHHHHHHHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccC------------------CccceEEe-ccChhhhhHHHHHHh
Confidence            789999999999999997 6678999999864 11100                  02355666 469999999999999


Q ss_pred             c-cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHH
Q 010590          105 S-GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQL  153 (506)
Q Consensus       105 t-g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l  153 (506)
                      + +.+......                      ....+.+.|..|+++.+
T Consensus        62 ~~~~l~~~~~~----------------------~~~~l~~Ea~fy~l~~l   89 (94)
T PF02214_consen   62 TGGKLPIPDEI----------------------CLEELLEEAEFYGLDEL   89 (94)
T ss_dssp             HTSSB---TTS-----------------------HHHHHHHHHHHT-HHH
T ss_pred             hcCccCCCCch----------------------hHHHHHHHHHHcCCCcc
Confidence            9 555442221                      14678999999999876

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.13  E-value=0.0057  Score=61.47  Aligned_cols=66  Identities=27%  Similarity=0.427  Sum_probs=52.5

Q ss_pred             HHHHHHHHhcCCCCCC-----------ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q 010590          269 VELVKLMVMGEGLNLD-----------EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVA  337 (506)
Q Consensus       269 ~~~v~~Ll~~~~~d~~-----------g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~  337 (506)
                      +..++.|. +++++.|           -.|+||+|+.+|...+|.+||+.|+ |+..+| ..|.||..+++   +.++-.
T Consensus       404 p~~ie~lk-en~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~-Dp~~kd-~~Grtpy~ls~---nkdVk~  477 (591)
T KOG2505|consen  404 PDSIEALK-ENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC-DPSTKD-GAGRTPYSLSA---NKDVKS  477 (591)
T ss_pred             hhHHHHHH-hcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC-Cchhcc-cCCCCcccccc---cHHHHH
Confidence            56677776 5655442           3599999999999999999999998 999999 89999999987   445444


Q ss_pred             HHH
Q 010590          338 VLL  340 (506)
Q Consensus       338 ~Ll  340 (506)
                      ..+
T Consensus       478 ~F~  480 (591)
T KOG2505|consen  478 IFI  480 (591)
T ss_pred             HHH
Confidence            444

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=96.03  E-value=0.027  Score=40.98  Aligned_cols=56  Identities=13%  Similarity=0.195  Sum_probs=44.3

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|+- +|+.|.+-+.+. -.|..++.||.+...+.                      ..|+|++|+.++++.+++|++.
T Consensus         3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~----------------------~~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDED----------------------EPIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCG----------------------TEEEETTS-HHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccc----------------------cccccCccCHHHHHHHHHHHHh
Confidence            45555 789999999987 58999999997533221                      2699999999999999999874

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=95.98  E-value=0.043  Score=42.65  Aligned_cols=86  Identities=20%  Similarity=0.244  Sum_probs=60.9

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhh--
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFL--  103 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~--  103 (506)
                      |+++- +|.+|-.-|-+ |--|+-.|+||.++..++..                  ...+|.+++|+..+++.+.+|+  
T Consensus        19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~------------------~~n~v~f~di~shiLeKvc~Yl~Y   79 (112)
T KOG3473|consen   19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEA------------------EKNEVYFRDIPSHILEKVCEYLAY   79 (112)
T ss_pred             eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCcccccc------------------ccceEEeccchHHHHHHHHHHhhh
Confidence            55555 56677776665 56799999999988776531                  3578999999999999999987  


Q ss_pred             ---hccc-eeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhC
Q 010590          104 ---YSGQ-VSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFG  149 (506)
Q Consensus       104 ---Ytg~-~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~  149 (506)
                         ||+. .++.+=.-+                  -+++.+|+.+|+.+.
T Consensus        80 k~rY~~~s~eiPeF~Ip------------------pemaleLL~aAn~Le  111 (112)
T KOG3473|consen   80 KVRYTNSSTEIPEFDIP------------------PEMALELLMAANYLE  111 (112)
T ss_pred             eeeeccccccCCCCCCC------------------HHHHHHHHHHhhhhc
Confidence               4554 222211101                  167899999998764

>smart00512 Skp1 Found in Skp1 protein family

Probab=94.74  E-value=0.081  Score=43.05  Aligned_cols=61  Identities=10%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|+. +|.+|.+.+.+. ..|..++.|+.+...+..                   ....|+|++|+..+++.+++|++.
T Consensus         4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~-------------------~~~~Ipl~~v~~~~L~~Vi~yc~~   63 (104)
T smart00512        4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDE-------------------NNNPIPLPNVTSKILSKVIEYCEH   63 (104)
T ss_pred             EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccC-------------------CCCCccCCCcCHHHHHHHHHHHHH
Confidence            55654 889999999987 689999999975432210                   125899999999999999999987


Q ss_pred             cc
Q 010590          106 GQ  107 (506)
Q Consensus       106 g~  107 (506)
                      -.
T Consensus        64 h~   65 (104)
T smart00512       64 HV   65 (104)
T ss_pred             cc
Confidence            54

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=94.40  E-value=0.14  Score=51.05  Aligned_cols=88  Identities=19%  Similarity=0.271  Sum_probs=64.9

Q ss_pred             EEEEECCeEEeeeehhhcccC--HHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhh
Q 010590           27 VTFSVEGRLVHAHRCILAARS--LFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLY  104 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S--~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Y  104 (506)
                      |.|.|||+.|.--|.=|+-..  .||.++|++.+....-                  ...-|=| |=+|+.|..+|.|+-
T Consensus        13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~------------------~~~~iFI-DRDPdlFaviLn~LR   73 (465)
T KOG2714|consen   13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKD------------------ESGAIFI-DRDPDLFAVILNLLR   73 (465)
T ss_pred             EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccC------------------CCCceEe-cCCchHHHHHHHHHh
Confidence            678899999999988885444  7999999887754320                  1122333 558999999999999


Q ss_pred             ccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHH
Q 010590          105 SGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLAL  155 (506)
Q Consensus       105 tg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~  155 (506)
                      ||+++++.-..                      -+.+...|..|++..|..
T Consensus        74 Tg~L~~~g~~~----------------------~~llhdEA~fYGl~~llr  102 (465)
T KOG2714|consen   74 TGDLDASGVFP----------------------ERLLHDEAMFYGLTPLLR  102 (465)
T ss_pred             cCCCCCccCch----------------------hhhhhhhhhhcCcHHHHH
Confidence            99998843321                      244666999999988765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.53  E-value=0.093  Score=56.35  Aligned_cols=93  Identities=23%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             CCCCCcCCccccCccCcc---chhHHHHH-----HHHHHHHHhhCH---------HHHHHHHHHHHHHHHhh--------
Q 010590          113 QKHEPRPNCGERGCWHTH---CTSAVDLA-----LDTLAAARYFGV---------EQLALLTQKQLANMVEK--------  167 (506)
Q Consensus       113 ~~~~~~~~c~~~l~~~l~---c~~~~~~~-----~~L~~~A~~~~~---------~~l~~l~~~~l~~~l~~--------  167 (506)
                      ++..+++.|++||.++++   |+++..|+     .+|...|+.|..         ++|..+..+++.+++.+        
T Consensus       118 Qi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E  197 (571)
T KOG4441|consen  118 QIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSE  197 (571)
T ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCH
Confidence            456678999999999998   99999987     889999998877         55556667777777743        


Q ss_pred             -hhHHHHHHHHHHh---hhhhhHHHHHHHhHHHHhcCCChhhhhcc
Q 010590          168 -ASIEDVMKVLIAS---RKQDMHQLWTTCSHLVAKSGLPPEVLAKH  209 (506)
Q Consensus       168 -~~~~~v~~~L~~a---~~~~~~~L~~~cl~~i~~~~~~~~~l~~~  209 (506)
                       ..++.+..|+...   +..+...+.+.    ++.+.+.+..+.+.
T Consensus       198 ~~vf~a~~~Wv~~d~~~R~~~~~~ll~~----vr~~ll~~~~l~~~  239 (571)
T KOG4441|consen  198 EEVFEAAMRWVKHDFEEREEHLPALLEA----VRLPLLPPQFLVEI  239 (571)
T ss_pred             HHHHHHHHHHHhcCHhhHHHHHHHHHHh----cCccCCCHHHHHHH
Confidence             4577888888743   34455555555    55555666655443

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=91.93  E-value=0.22  Score=48.25  Aligned_cols=90  Identities=14%  Similarity=0.237  Sum_probs=63.9

Q ss_pred             eEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcC-CCCHHHHHHHhhhhhccceeccC
Q 010590           34 RLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVN-SVGYEVFLLLLQFLYSGQVSIVP  112 (506)
Q Consensus        34 ~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-~i~~~~~~~ll~f~Ytg~~~~~~  112 (506)
                      +.|.|.+-+|-..=.||+..+.....++.                   ....|+|. .=+-.+|+.+++|+....-.+++
T Consensus        14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~-------------------~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~   74 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQ-------------------RWEEIDISVHCDVHIFEWLMRYVKGEPPSLTP   74 (317)
T ss_pred             eeeeccHHHHHHhhHHHHHHHhhcccccC-------------------cCCCcceEEecChhHHHHHHHHhhcCCCcCCc
Confidence            67999999999999999999965222211                   11234443 33678999999999996655555


Q ss_pred             CCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 010590          113 QKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMV  165 (506)
Q Consensus       113 ~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l  165 (506)
                      .+                       +..++.-++.+++++|.+.|-.++.+.+
T Consensus        75 ~N-----------------------vvsIliSS~FL~M~~Lve~cl~y~~~~~  104 (317)
T PF11822_consen   75 SN-----------------------VVSILISSEFLQMESLVEECLQYCHDHM  104 (317)
T ss_pred             Cc-----------------------EEEeEehhhhhccHHHHHHHHHHHHHhH
Confidence            44                       3447777888888888888877765433

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.47  E-value=1.1  Score=41.11  Aligned_cols=91  Identities=20%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCC---CCC----ChHHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC--CCCCChH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGL---NLD----EALALHYAV--ENCSREVVKALLELGAADVNYPA--GPAGKTP  323 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~---d~~----g~t~Lh~A~--~~g~~~~v~~Ll~~g~~~v~~~~--~~~g~tp  323 (506)
                      .-.++|.+|+.++..+++-+||..-..   |+-    +.--+-|+.  .+.+..++++.|++|-.+||.+=  .+.|.|-
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            347899999999999999999943222   221    222333333  34467889999999965888531  2589999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCC
Q 010590          324 LHIAAEMVSPDMVAVLLDHHAD  345 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~  345 (506)
                      |--|...+..+++.+||++||-
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.97  E-value=2.7  Score=38.56  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCCChHHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCChHHHHHHH--hCCH
Q 010590          259 RMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGA---ADVNYPAGPAGKTPLHIAAE--MVSP  333 (506)
Q Consensus       259 ~L~~A~~~g~~~~v~~Ll~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~---~~v~~~~~~~g~tpLh~A~~--~~~~  333 (506)
                      .|--|+...+.+.+.-++...+   +-.+++-+|...+..+++.+|+..-.   .|+-..  ..+.--+-++..  .-+.
T Consensus       156 sledAV~AsN~~~i~~~VtdKk---dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~h~a~~  230 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK---DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSEHSASY  230 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH---HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhhcCCcH
Confidence            4667888888888888873222   24688999999999999999997521   022111  223334555543  3466


Q ss_pred             HHHHHHHHCC-CCCCCC---CCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          334 DMVAVLLDHH-ADPNVR---TVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       334 ~~v~~Ll~~g-a~~~~~---d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      .+.++.|++| ++||.+   -+.|.|-|.-|..                  .+..+++..||+.||-
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~K------------------y~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMK------------------YKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHHhHHh------------------cCcHHHHHHHHHcCcc
Confidence            8899999998 788864   5689999999987                  6888999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.13  E-value=2.6  Score=37.03  Aligned_cols=117  Identities=16%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhccceecc
Q 010590           32 EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIV  111 (506)
Q Consensus        32 ~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Ytg~~~~~  111 (506)
                      +|+.|.+-+.+. -.|..+++++...-...                    ....|+|+.|+..+|..+|+|+|-=+-+..
T Consensus        13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~--------------------~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~   71 (162)
T KOG1724|consen   13 DGEIFEVEEEVA-RQSQTISAHMIEDGCAD--------------------ENDPIPLPNVTSKILKKVIEWCKKHKDDDP   71 (162)
T ss_pred             CCceeehhHHHH-HHhHHHHHHHHHcCCCc--------------------cCCccccCccCHHHHHHHHHHHHHcccccc
Confidence            788888888776 77999999886533221                    114799999999999999999998443221


Q ss_pred             CCCCCCcCCccccCccCccchhHH---------HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010590          112 PQKHEPRPNCGERGCWHTHCTSAV---------DLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKV  176 (506)
Q Consensus       112 ~~~~~~~~~c~~~l~~~l~c~~~~---------~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~~  176 (506)
                      ... +-...|..      ..+..|         ....+|+.+|..+.++.|..++.+.+.++++..+.+.....
T Consensus        72 ~~~-~~~~~~~~------~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~  138 (162)
T KOG1724|consen   72 ANP-EDKELPEE------TDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREI  138 (162)
T ss_pred             ccc-cccccccc------CCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            100 00000100      001111         12478899999999999999999988877765555554443

>PHA02790 Kelch-like protein; Provisional

Probab=87.43  E-value=0.67  Score=48.90  Aligned_cols=67  Identities=12%  Similarity=0.104  Sum_probs=51.8

Q ss_pred             CCCCCcCCccccCccCcc---chhHHHHH-----HHHHHHHHhhCHHHHHHHHHH---HH-----HHHH---------hh
Q 010590          113 QKHEPRPNCGERGCWHTH---CTSAVDLA-----LDTLAAARYFGVEQLALLTQK---QL-----ANMV---------EK  167 (506)
Q Consensus       113 ~~~~~~~~c~~~l~~~l~---c~~~~~~~-----~~L~~~A~~~~~~~l~~l~~~---~l-----~~~l---------~~  167 (506)
                      +...+++.|++||..+++   |+++..||     .+|.+.|.+|.++.|..+++.   .+     ..+|         +.
T Consensus       104 qi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L~v~~Ee  183 (480)
T PHA02790        104 SVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESDELNVPDED  183 (480)
T ss_pred             ChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccccCCCccHH
Confidence            344678899999999998   99999998     789999999999999988752   22     2233         22


Q ss_pred             hhHHHHHHHHHH
Q 010590          168 ASIEDVMKVLIA  179 (506)
Q Consensus       168 ~~~~~v~~~L~~  179 (506)
                      ..++.+++|+..
T Consensus       184 ~V~eav~~Wl~~  195 (480)
T PHA02790        184 YVVDFVIKWYMK  195 (480)
T ss_pred             HHHHHHHHHHHh
Confidence            567788888874

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.86  E-value=2.5  Score=31.99  Aligned_cols=46  Identities=17%  Similarity=0.320  Sum_probs=22.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCCChHHHHHHHHcCCHHHHHHHHHc
Q 010590          259 RMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLEL  307 (506)
Q Consensus       259 ~L~~A~~~g~~~~v~~Ll~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  307 (506)
                      .+..|+..|+.++++.+++....+   ...+..|+..-+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPD---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccH---HHHHHHHHHHhhHHHHHHHHHh
Confidence            345555555555555555222111   3345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PHA02713 hypothetical protein; Provisional

Probab=84.51  E-value=1.1  Score=48.23  Aligned_cols=83  Identities=8%  Similarity=0.013  Sum_probs=55.8

Q ss_pred             CCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCcc---chhHHHHH-----HHHHHHHHhhCH---------HHH
Q 010590           91 VGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTH---CTSAVDLA-----LDTLAAARYFGV---------EQL  153 (506)
Q Consensus        91 i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~---c~~~~~~~-----~~L~~~A~~~~~---------~~l  153 (506)
                      ++.+-++.+|.-.-.      .+...+++.|++||..+++   |+++..++     .+|.+.|.+|..         ++|
T Consensus        91 i~~~nv~~ll~aA~~------lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef  164 (557)
T PHA02713         91 ISSMNVIDVLKCADY------LLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAF  164 (557)
T ss_pred             CCHHHHHHHHHHHHH------HCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhh
Confidence            345555555532211      3445678899999999998   99988764     567888888877         445


Q ss_pred             HHHHHHHHHHHHhh----------hhHHHHHHHHHH
Q 010590          154 ALLTQKQLANMVEK----------ASIEDVMKVLIA  179 (506)
Q Consensus       154 ~~l~~~~l~~~l~~----------~~~~~v~~~L~~  179 (506)
                      ..+..+.+..+|.+          ..++.+++|+..
T Consensus       165 ~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~  200 (557)
T PHA02713        165 KKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEY  200 (557)
T ss_pred             hhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhc
Confidence            55666777777753          245667888874

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=80.81  E-value=11  Score=34.49  Aligned_cols=93  Identities=20%  Similarity=0.331  Sum_probs=65.0

Q ss_pred             EEEEECCeEEeeeehhhcccC--HHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhh
Q 010590           27 VTFSVEGRLVHAHRCILAARS--LFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLY  104 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S--~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Y  104 (506)
                      |.+.++|+.|---+--|.-|=  ...-+||.+.-.....+                 .+.-+-| +-+|.-|+-+|.|+-
T Consensus        11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d-----------------~kGa~lI-DRsp~yFepIlNyLr   72 (302)
T KOG1665|consen   11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQED-----------------KKGAVLI-DRSPKYFEPILNYLR   72 (302)
T ss_pred             heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccc-----------------cCceEEE-ccCchhhHHHHHHHh
Confidence            677889998887776665554  36678887643222100                 2233444 568999999999999


Q ss_pred             ccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 010590          105 SGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQK  159 (506)
Q Consensus       105 tg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~  159 (506)
                      .|.+.......                      +..+++.|+.|++-.++.-.++
T Consensus        73 ~Gq~~~~s~i~----------------------~lgvLeeArff~i~sL~~hle~  105 (302)
T KOG1665|consen   73 DGQIPSLSDID----------------------CLGVLEEARFFQILSLKDHLED  105 (302)
T ss_pred             cCceeecCCcc----------------------HHHHHHHhhHHhhHhHHhHHhh
Confidence            99997754431                      4679999999999888765554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	506
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		6e-08
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-07
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		8e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		9e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-05
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-04
1uoh_A	226	Human Gankyrin Length = 226		9e-04

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LHYA EN  +E+VK LL  GA D N      G+TPLH AAE    ++V +LL   ADPN 
Sbjct: 74  LHYAAENGHKEIVKLLLSKGA-DPNAKDSD-GRTPLHYAAENGHKEIVKLLLSKGADPNT 131
Query: 349 RTVDGVTPLDILRTLTSDFLFK 370
              DG TPLD+ R   ++ + K
Sbjct: 132 SDSDGRTPLDLAREHGNEEIVK 153

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A EN  +EVVK LL  GA D N      GKTPLH+AAE    ++V +LL   ADPN 
Sbjct: 74  LHLAAENGHKEVVKLLLSQGA-DPNAKDSD-GKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Query: 349 RTVDGVTPLDILRTLTSDFLFK 370
              DG TPLD+ R   ++ + K
Sbjct: 132 SDSDGRTPLDLAREHGNEEVVK 153

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 270 ELVKLMV-MGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH 325
           E+VKL++  G  +N  ++     LH+A EN  +EVVK L+  GA DVN      G+TPLH
Sbjct: 51  EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNAKDSD-GRTPLH 108
Query: 326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFK 370
            AAE    ++V +L+   AD N    DG TPLD+ R   ++ + K
Sbjct: 109 HAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK 153

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 270 ELVKLMV-MGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH 325
           E+VKL++  G  +N  ++     LHYA +   +E+VK L+  GA DVN      G+TPLH
Sbjct: 51  EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA-DVNAKDSD-GRTPLH 108
Query: 326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFK 370
            AA+    ++V +L+   AD N    DG TPLD+ R   ++ + K
Sbjct: 109 YAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 292 AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV 351
           AV+N   ++V+ LLE G A+VN+     G TPLH A +M   D+V +LL H ADP +R  
Sbjct: 32  AVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 90
Query: 352 DGVTPLDILRTLTSD------FLFKGA 372
           +G TP  IL  +         FL KGA
Sbjct: 91  NGATPF-ILAAIAGSVKLLKLFLSKGA 116

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 292 AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV 351
           AV+N   ++V+ LLE G A+VN+     G TPLH A +M   D+V +LL H ADP +R  
Sbjct: 12  AVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70
Query: 352 DGVTPL 357
           +G TP 
Sbjct: 71  NGATPF 76

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
           +K+    RA    D E+  LM  G  +N  + L    LH A +    E+V+ LL+ GA D
Sbjct: 16  KKLLEAARA--GQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           VN      G TPLH+AA+    ++V VLL H AD N +  +G TPL
Sbjct: 73  VN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPL 117

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 269 VELVKLMVMGEGLNLDEALA-----LHYAVENCSREVVKALLELGAADVNYPAGPAGKTP 323
           VE V  ++   G N+D  ++     L+ A EN  R  VK LLE GA DVN   G    +P
Sbjct: 114 VECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ--GKGQDSP 169
Query: 324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL---RTLTSDFLFKGAVPGLTHIE 380
           LH  A   S ++  +L+D  AD   +  +G  P++++     L   FL +   P L  + 
Sbjct: 170 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLC 229
Query: 381 PNKLRLCLELVQ 392
             ++R C  + Q
Sbjct: 230 RLRIRKCFGIQQ 241

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N    D    LH A  N   E+V+ LL+ GA DVN  +
Sbjct: 19  LEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA-DVN-AS 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G TPLH+AA     ++V VLL H AD N    DG TPL +
Sbjct: 77  DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
           E  N D    LH AV +   E+V+ L + GA D+N P    G+TPLH+A E  +  ++ +
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 339 LLDHHADPNVRTVDGVTPL 357
           LL   ADP  R   G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
           E  N D    LH AV +   E+V+ L + GA D+N P    G+TPLH+A E  +  ++ +
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 339 LLDHHADPNVRTVDGVTPL 357
           LL   ADP  R   G TPL
Sbjct: 211 LLKAGADPTARMYGGRTPL 229

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
           +K+    RA    D E+  LM  G  +N ++      LH  V N   E+++ LL+  AAD
Sbjct: 16  KKLLEAARA--GQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY-AAD 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           VN  +  +G TPLH+AA     ++V VLL + AD N     G TPL
Sbjct: 73  VN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPL 117

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 263 ALDSSDVELVKLMV-MGEGLNLDEA---LALHYAVENCSREVVKALLELGAADVNYPAGP 318
           A  +  +E+VKL++  G  +N  +      LH A  N   EVVK LLE GA DVN     
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN-AKDK 66
Query: 319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
            G+TPLH+AA     ++V +LL+  AD N +  +G TPL +
Sbjct: 67  NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 268 DVELVKLMVMGEGLN-LDEA--LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
           D E+  LM  G  +N +D+A    LH A +    E+V+ LL+ GA DVN  +   G+TPL
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVN-ASDSWGRTPL 84
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           H+AA +   ++V VLL++ AD N +   G T  DI
Sbjct: 85  HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N    D    LH A      E+V+ LL+ GA DVN   
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVN-AK 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G TPLH+AA     ++V VLL   AD N +  DG TPL +
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 119

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 268 DVELVKLMVMGEGLN-LDEA--LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
           D E+  LM  G  +N +D+A    LH A +    E+V+ LL+ GA DVN  +   G+TPL
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVN-ASDIWGRTPL 84
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           H+AA +   ++V VLL++ AD N +   G T  DI
Sbjct: 85  HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A  N   EVVK LLE GA DVN      G+TPLH+AA     ++V +LL+  AD N 
Sbjct: 6   LHLAARNGHLEVVKLLLEAGA-DVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 349 RTVDGVTPLDI 359
           +  +G TPL +
Sbjct: 64  KDKNGRTPLHL 74

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N    D    LH A      E+V+ LL+ GA DVN   
Sbjct: 7   LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVN-AK 64
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G TPLH+AA     ++V VLL   AD N +  DG TPL +
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N    D    LH A      E+V+ LL+ GA DVN   
Sbjct: 7   LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVN-AK 64
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G TPLH+AA     ++V VLL   AD N +  DG TPL +
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL 107

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALAL---HYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N ++ + L   H A  N   E+V+ LL+ GA DVN   
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA-DVN-AI 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G+TPLH+ A     ++V VLL H AD N +   G T  DI
Sbjct: 77  DAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 268 DVELVKLMVMGEGLN-LDEA--LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
           D E+  LM  G  +N +D+A    LH A +    E+V+ LL+ GA DVN      G+TPL
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVN-ARDIWGRTPL 84
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           H+AA +   ++V VLL++ AD N +   G T  DI
Sbjct: 85  HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A +N   E+V+ LL+ GA DVN      G TPLH+AA+    ++V VLL H AD N 
Sbjct: 84  LHLAADNGHLEIVEVLLKYGA-DVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 349 RTVDGVTPLDI 359
           +   G T  DI
Sbjct: 142 QDKFGKTAFDI 152

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 253 EDQKIRRMRRALDSSDVELVKLMVM-GEGLNLDEALA---LHYAVENCSREVVKALLELG 308
           +D  +  +  A  +  +E+V++++  G  +N  ++     LH A  +   E+V+ LL+ G
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 309 AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           A DVN     AG TPLH+AA     ++V VLL H AD N +   G+T  DI
Sbjct: 96  A-DVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A      E+V+ LL  GA DVN      G TPLH+AA +   ++V VLL + AD N 
Sbjct: 39  LHMAAAVGHLEIVEVLLRNGA-DVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA 96
Query: 349 RTVDGVTPL 357
           +   G+TPL
Sbjct: 97  KDATGITPL 105

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 269 VELVKLMVM-GEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
           +E+V++++  G  +N D++L    LH A +    EVV+ LL+ GA DVN      G TPL
Sbjct: 60  LEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA-DVN-ANDHNGFTPL 117
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           H+AA +   ++V VLL H AD N +   G T  DI
Sbjct: 118 HLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
           D    LH A +N   E VK LL  GA DVN      G TPLH+AA+    ++V +LL   
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGA-DVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 344 ADPNVRTVDGVTP 356
           AD N R+ DG TP
Sbjct: 66  ADVNARSKDGNTP 78

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A      E+V+ LL+ GA DVN   G  G+TPLH+AA     ++V VLL H AD N 
Sbjct: 51  LHLAAMLGHLEIVEVLLKNGA-DVN-ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 349 RTVDGVTPLDI 359
           +   G T  DI
Sbjct: 109 QDKFGKTAFDI 119

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N ++      LH A      E+V+ LL+ GA DVN   
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA-DVN-AL 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
             +G TPLH+AA+    ++V VLL + AD N     G TPL +
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL 119

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLN-LDE--ALALHYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N LDE     LH A +    E+V+ LL+ GA DVN   
Sbjct: 19  LEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA-DVN-AE 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G TPLH+AA     ++V VLL H AD N +   G T  DI
Sbjct: 77  DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
           +K+    RA    D E+  LM  G  +N  + +    LH A      E+V+ LL+ GA D
Sbjct: 16  KKLLEAARA--GRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           VN      G TPLH+AA     ++V VLL + AD N +  +G+TPL
Sbjct: 73  VN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL 117

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
           +K+    RA    D E+  LM  G  +N ++A     LH A  N   E+V+ LL+ GA D
Sbjct: 16  KKLLEAARA--GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           VN     AG TPL +AA     ++V VLL + AD N   ++G TPL
Sbjct: 73  VN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A      EV K LL+   A VN  A    +TPLH AA +   +MV +LL+++A+PN+
Sbjct: 51  LHMAARAGHTEVAKYLLQ-NKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 349 RTVDGVTPLDI 359
            T  G TPL I
Sbjct: 109 ATTAGHTPLHI 119

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 269 VELVKLMVMGEGLNLDEALA-----LHYAVENCSREVVKALLELGAADVNYPAGPAGKTP 323
           VE V  ++   G N+D  ++     L+ A EN  R  VK LLE GA DVN   G    +P
Sbjct: 170 VECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQ--GKGQDSP 225
Query: 324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL 360
           LH      S ++  +L+D  AD   +  +G  P++++
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEA---LALHYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N ++      LH A +    E+V+ LL+ GA DVN   
Sbjct: 19  LEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA-DVN-AH 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G TPLH+AA     ++V VLL H AD N +   G T  DI
Sbjct: 77  DNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 266 SSDVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNYPAGPAG 320
           S  +E+V+++ +  G ++D A       LH A      E+V+ LL+ GA DVN      G
Sbjct: 57  SGHLEIVEVL-LKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA-DVN-AFDMTG 113
Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
            TPLH+AA+    ++V VLL + AD N +   G T  DI
Sbjct: 114 STPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A  +    +V+ L+ LGA DVN      G+T LH+A ++ +PD+V++LL   AD N 
Sbjct: 121 LHLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 349 RTVDGVTPLDI 359
            T  G +P  +
Sbjct: 180 VTYQGYSPYQL 190

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
           N +    LH A  +    +V+ L+ LGA DVN      G+T LH+A ++ +PD+V++LL 
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Query: 342 HHADPNVRTVDGVTPLDI 359
             AD N  T  G +P  +
Sbjct: 170 CGADVNRVTYQGYSPYQL 187

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPA 319
           +R  LDS+    + L    E  N D   ALH AV    +E V+ LLE GA D++     +
Sbjct: 95  LRALLDSAAPGTLDL----EARNYDGLTALHVAVNTECQETVQLLLERGA-DIDAVDIKS 149
Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G++PL  A E  S  MV +LL H A+ N +   G + L
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALAL---HYAVENCSREVVKALLELGAAD 311
           +K+    RA    D E+  LM  G  +N  +A  L   H A      E+V+ LL+ GA D
Sbjct: 16  KKLLEAARA--GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           VN      G TPLH+AA +   ++V VLL H AD N     G TPL
Sbjct: 73  VN-AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPL 117

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
           +K+    RA    D E+  LM  G  +N  +      LH A  +   E+V+ LL+ GA D
Sbjct: 16  RKLLEAARA--GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           V+  +   G TPLH+AA     ++V VLL + AD N    DG+TPL
Sbjct: 73  VD-ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL 117

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 255 QKIRRMRRALDSSDVELVKLMVMGEGLNLDEALA---LHYAVENCSREVVKALLELGAAD 311
           +K+    RA    D E+  LM  G  +N ++      LH A      E+V+ LL+ GA D
Sbjct: 16  KKLLEAARA--GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA-D 72
Query: 312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           VN  A   G TPLH+AA     ++V VLL + AD N     G TPL
Sbjct: 73  VN-AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPL 117

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A      E+V+ LL+ GA DVN      G TPLH+AA M   ++V VLL H AD N 
Sbjct: 84  LHLAALIGHLEIVEVLLKHGA-DVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 349 RTVDGVTPLDI 359
           +   G T  DI
Sbjct: 142 QDKFGKTAFDI 152

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEALAL---HYAVENCSREVVKALLELGAADVNYPA 316
           +  A    D E+  LM  G  +N  +   L   + A  +   E+V+ LL+ GA DVN   
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVN-AV 76
Query: 317 GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
              G TPLH+AA +   ++  VLL H AD N +   G T  DI
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
           D   ALH+A      E+V+ LL+LG   VN     AG +PLHIAA     ++V  LL   
Sbjct: 40  DSRTALHWACSAGHTEIVEFLLQLGVP-VN-DKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 344 ADPNVRTVDGVTPL 357
           A  N    +G TPL
Sbjct: 98  AQVNAVNQNGCTPL 111

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 269 VELVKLMVM-GEGLNLDEALA---LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL 324
           +E+V++++  G  +N  ++L    LH A      E+V+ LL+ GA DVN  +   G TPL
Sbjct: 60  LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA-DVN-ASDSHGFTPL 117
Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           H+AA+    ++V VLL + AD N +   G T  DI
Sbjct: 118 HLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
           D   ALH+A      E+V+ LL+LG   VN     AG +PLHIAA     ++V  LL   
Sbjct: 39  DSRTALHWACSAGHTEIVEFLLQLGVP-VN-DKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 344 ADPNVRTVDGVTPL 357
           A  N    +G TPL
Sbjct: 97  AQVNAVNQNGCTPL 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	506
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-06
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	1e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-05
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	2e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	6e-12
2rfa_A	232	Transient receptor potential cation channel subfa	3e-11
2rfa_A	232	Transient receptor potential cation channel subfa	7e-11
2rfa_A	232	Transient receptor potential cation channel subfa	4e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-07
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	5e-12
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	7e-12
2pnn_A	273	Transient receptor potential cation channel subfa	8e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	9e-07
2pnn_A	273	Transient receptor potential cation channel subfa	5e-06
2pnn_A	273	Transient receptor potential cation channel subfa	7e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
2etb_A	256	Transient receptor potential cation channel subfam	5e-09
2etb_A	256	Transient receptor potential cation channel subfam	5e-07
2etb_A	256	Transient receptor potential cation channel subfam	5e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-09
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	3e-10
2vpk_A	116	Myoneurin; transcription regulation, transcription	3e-10
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	4e-10
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	7e-10
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	7e-10
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	1e-09
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	1e-09
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	2e-09
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	2e-09
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	2e-09
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-09
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	6e-08
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	4e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-07
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.4 bits (207), Expect = 2e-18
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  +    +V+ L+ LGA DVN      G+T LH+A ++ +PD+V++LL   AD N
Sbjct: 120 CLHLASIHGYLGIVELLVSLGA-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178

Query: 348 VRTVDGVTPLDI 359
             T  G +P  +
Sbjct: 179 RVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH AV+  + ++V  LL+ GA DVN      G +P  +     S  +   L     +  
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGA-DVNRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENL 211

Query: 348 VRTVDGVTPLDI 359
               +       
Sbjct: 212 QMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.2 bits (165), Expect = 8e-13
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 288 ALHYAVEN----CSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
            LH A+ +     + EV++ +    A  +N+      +TPLH+A     P++   LL   
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLA-FLNFQNN-LQQTPLHLAVITNQPEIAEALLGAG 68

Query: 344 ADPNVRTVDGVTPL 357
            DP +R   G TPL
Sbjct: 69  CDPELRDFRGNTPL 82

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADP- 346
            LH AV     E+ +ALL  G  D        G TPLH+A E      V VL      P 
Sbjct: 48  PLHLAVITNQPEIAEALLGAGC-DPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 347 -----NVRTVDGVTPL 357
                     +G T L
Sbjct: 106 LHSILKATNYNGHTCL 121

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGP-----AGKTPLHIAAEMVSPDMVAVLLDH 342
            LH A E      V  L +      +  +        G T LH+A+      +V +L+  
Sbjct: 81  PLHLACEQGCLASVGVLTQSCT-TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 139

Query: 343 HADPNVRT-VDGVTPL 357
            AD N +   +G T L
Sbjct: 140 GADVNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 320 GKTPLHIAAE----MVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G + LH+A       ++ +++  +    A  N +     TPL
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 49

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 5/49 (10%), Positives = 11/49 (22%), Gaps = 2/49 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMV 336
                    S  + + L +L   +      P  +       E    +  
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTL-ENLQML-PESEDEESYDTESEFTEFT 233

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.6 bits (200), Expect = 6e-18
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL +     S + V+ L E GA D+++     G T LH+AA  V P++V  L++  AD  
Sbjct: 79  ALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137

Query: 348 VRTVDGVTPLDI 359
           V    G+T L++
Sbjct: 138 VEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
               A      + +  LLE    DV+      G+T L   A + S   V +L +  AD +
Sbjct: 47  PWWTAARKADEQALSQLLE--DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADLD 103

Query: 348 VRTV-DGVTPL 357
            R +  G+T L
Sbjct: 104 HRDMRGGLTAL 114

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
             + A+      ++           +  ADV        +TP   AA       ++ LL 
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIA-ADVVS----EYETPWWTAARKADEQALSQLL- 64

Query: 342 HHADPNVRTVDGVTPL 357
              D +    +G T L
Sbjct: 65  EDRDVDAVDENGRTAL 80

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.3 bits (155), Expect = 6e-12
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH A      EVV+AL+ELGA D+       G T L +A E++        +       
Sbjct: 113 ALHMAAGYVRPEVVEALVELGA-DIEVEDE-RGLTALELAREILKTTPKGNPMQFGRRIG 170

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH AV +   E+V+ L + GA D+N P    G+TPLH+A E  +  ++ +LL   ADP 
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219

Query: 348 VRTVDGVTPL 357
            R   G TPL
Sbjct: 220 ARMYGGRTPL 229

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH AVE  +  V++ LL+ GA D        G+TPL  A    +P +  +L  H A   
Sbjct: 195 PLHLAVEAQAASVLELLLKAGA-DPTARMY-GGRTPLGSALLRPNPILARLLRAHGAPEP 252

Query: 348 VRTVDGVTPLDI 359
               D ++P   
Sbjct: 253 EDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
           ALH AV +     +  LL   A    ++      G+T LH+AA +     V  L    A 
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLD-LQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 346 PNVRTVDGVTPL 357
             V    G T L
Sbjct: 71  VLVAERGGHTAL 82

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.3 bits (160), Expect = 5e-12
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH A        V+ L   GA  V   A   G T LH+A  + +     VLL       
Sbjct: 48  ALHLAAILGEASTVEKLYAAGA-GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 348 VRTVDGVTPL 357
               D     
Sbjct: 106 RDASDTYLTQ 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           A   +  N   E      +     +       G TPLH+A      +MV +L D  AD N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRL-QLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 348 VRTVD-GVTPL 357
                 G TPL
Sbjct: 186 KPEPTCGRTPL 196

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 12/82 (14%)

Query: 288 ALHYAVENCSREVVKALLELGA------ADVNYPAGPA-----GKTPLHIAA-EMVSPDM 335
           ALH A    +      LL+         +D                P  + +      + 
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 336 VAVLLDHHADPNVRTVDGVTPL 357
                D          DG TPL
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPL 162

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE 329
            L  A+   +  + + L   GA       G    +P   +  
Sbjct: 228 PLGSALLRPNPILARLLRAHGA-PEPE-DGGDKLSPCSSSGS 267

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADP---NVRTVDGVTPL 357
           G T LH+A        +  LL   A     +++   G T L
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTAL 49

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.8 bits (198), Expect = 3e-17
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
            LH AV   ++ V + L+   A D++     A    G TPL +AA +    M+  L++ H
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVEGMLEDLINSH 115

Query: 344 ADPNVRTVDGVTPL 357
           AD N     G + L
Sbjct: 116 ADVNAVDDLGKSAL 129

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH+A    + +    LL+ GA + +       +TPL +AA   S +   VLLDH A+ +
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGA-NKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD 185

Query: 348 VRTVDGVTPLDI 359
           +       P DI
Sbjct: 186 ITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A       +++ L+   A DVN      GK+ LH AA + + D   VLL + A+ +
Sbjct: 95  PLILAARLAVEGMLEDLINSHA-DVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152

Query: 348 VRTVDGVTPL 357
           ++     TPL
Sbjct: 153 MQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 66.3 bits (163), Expect = 1e-12
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
           ALH A      +  K LLE  A D N      G+TPLH A    +  +  +L+ + A D 
Sbjct: 28  ALHLAARYSRSDAAKRLLEASA-DANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85

Query: 347 NVRTVDGVTPL 357
           + R  DG TPL
Sbjct: 86  DARMHDGTTPL 96

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.1 bits (147), Expect = 1e-10
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A    S E  K LL+  A + +       + P  IA E +  D+V +L +++   +
Sbjct: 161 PLFLAAREGSYETAKVLLDHFA-NRD-ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 58.2 bits (142), Expect = 6e-10
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 297 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP 356
           +  V+   +  GA  ++      G+T LH+AA     D    LL+  AD N++   G TP
Sbjct: 3   APAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 357 L 357
           L
Sbjct: 62  L 62

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 79.2 bits (196), Expect = 7e-17
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL +     S + V+ L E GA D+++     G T LH+AA  V P++V  L++  AD  
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138

Query: 348 VRTVDGVTPLDI 359
           V    G+T L++
Sbjct: 139 VEDERGLTALEL 150

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.5 bits (158), Expect = 7e-12
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
           + A+      ++           +  ADV        +TP   AA       ++ LL   
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIA-ADVVS----EYETPWWTAARKADEQALSQLL-ED 67

Query: 344 ADPNVRTVDGVTPL 357
            D +    +G T L
Sbjct: 68  RDVDAVDENGRTAL 81

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
               A      + +  LLE    DV+      G+T L   A + S   V +L +  AD +
Sbjct: 48  PWWTAARKADEQALSQLLE--DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104

Query: 348 VRTV-DGVTPL 357
            R +  G+T L
Sbjct: 105 HRDMRGGLTAL 115

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 24/93 (25%)

Query: 288 ALHYAVENCSREVVKALLELGA---------------------ADVNYPAGPAGKTPLHI 326
           AL  A E          ++ G                       ++    G  GK   ++
Sbjct: 147 ALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRG-KGKDVEYL 205

Query: 327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
                  D   V   H A+   +  D    L+ 
Sbjct: 206 VRWKDGGDCEWVKGVHVAEDVAK--DYEDGLEY 236

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 78.7 bits (195), Expect = 1e-16
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
            LH AV   ++ V + L+   A D++     A    G TPL +AA +    M+  L++ H
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVEGMLEDLINSH 147

Query: 344 ADPNVRTVDGVTPL 357
           AD N     G + L
Sbjct: 148 ADVNAVDDLGKSAL 161

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 73.3 bits (181), Expect = 9e-15
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
           ALH+A    + +    LL+ GA + +           +TPL +AA   S +   VLLDH 
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGA-NKD-----MQNNREETPLFLAAREGSYETAKVLLDHF 213

Query: 344 ADPNVRTVDGVTPLDI 359
           A+ ++       P DI
Sbjct: 214 ANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.0 bits (175), Expect = 4e-14
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A       +++ L+   A DVN      GK+ LH AA + + D   VLL + A+ +
Sbjct: 127 PLILAARLAVEGMLEDLINSHA-DVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184

Query: 348 VRTVDGVTPL 357
           ++     TPL
Sbjct: 185 MQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
           ALH A      +  K LLE  A D N      G+TPLH A    +  +  +L+ + A D 
Sbjct: 60  ALHLAARYSRSDAAKRLLEASA-DANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 347 NVRTVDGVTPL 357
           + R  DG TPL
Sbjct: 118 DARMHDGTTPL 128

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 288 ALHYAVENC-------------SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPD 334
            L  A  +              +  V+   +  GA  ++      G+T LH+AA     D
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSD 71

Query: 335 MVAVLLDHHADPNVRTVDGVTPL 357
               LL+  AD N++   G TPL
Sbjct: 72  AAKRLLEASADANIQDNMGRTPL 94

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A    S E  K LL+  A + +       + P  IA E +  D+V +L   H   +
Sbjct: 193 PLFLAAREGSYETAKVLLDHFA-NRDI-TDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 78.3 bits (194), Expect = 1e-16
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH AV    +E V+ LLE GA D++     +G++PL  A E  S  MV +LL H A+ N
Sbjct: 119 ALHVAVNTECQETVQLLLERGA-DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177

Query: 348 VRTVDGVTPL 357
            +   G + L
Sbjct: 178 AQMYSGSSAL 187

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.6 bits (182), Expect = 4e-15
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L +AVEN S  +V+ LL+ GA +VN     +G + LH A+      +V  L+   AD +
Sbjct: 153 PLIHAVENNSLSMVQLLLQHGA-NVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210

Query: 348 VRTVDGVTPLDI 359
           ++     TPL +
Sbjct: 211 LKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 7e-14
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 288 ALHYAVENCSREVVKALLELGA---ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
            LH AV   +   V  L+ L      +++       +TPLH+A     P +V +L+   A
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70

Query: 345 DPNVRTVDGVTPL 357
            P      G T  
Sbjct: 71  SPMALDRHGQTAA 83

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.1 bits (165), Expect = 9e-13
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 288 ALHYAVENCSREVVKALLELGA---ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
           A H A E+ S   ++ALL+  A    D+       G T LH+A      + V +LL+  A
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALHVAVNTECQETVQLLLERGA 140

Query: 345 DPNVRTV-DGVTPL 357
           D +   +  G +PL
Sbjct: 141 DIDAVDIKSGRSPL 154

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.9 bits (162), Expect = 2e-12
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA--- 344
            LH AV      VV+ L+  GA          G+T  H+A E  SP  +  LLD  A   
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGA-SPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 345 -DPNVRTVDGVTPL 357
            D   R  DG+T L
Sbjct: 107 LDLEARNYDGLTAL 120

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
           ALH A       +V+ L+  GA D +        TPL +A      D++       A
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGA-DSSLKNC-HNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLD----HHADPNVRTVDGVTPL 357
           G TPLHIA    +   V  L++       + ++      TPL
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 50

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  +   +VV+ LL+  A  VN   G    +PLH AA+    D+V +LL + A  N
Sbjct: 46  PLHEACNHGHLKVVELLLQHKA-LVN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

Query: 348 VRTVDGVTPLDI 359
              + G+ P+D 
Sbjct: 104 AVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A        V+ LL+ G+ D N     AG TPLH A       +V +LL H A  N
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGS-DPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70

Query: 348 VRTVDGVTPL 357
                  +PL
Sbjct: 71  TTGYQNDSPL 80

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +N   ++VK LL  GA   N      G  P+    +      + +L + +   +
Sbjct: 79  PLHDAAKNGHVDIVKLLLSYGA-SRN-AVNIFGLRPVDYTDDESMKS-LLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 8e-08
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 310 ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
            D        G+T LHIA+       V  LL + +DPNV+   G TPL
Sbjct: 2   IDPF--TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL 47

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.3 bits (194), Expect = 3e-16
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L+ A EN  R  VK LLE GA DVN   G    +PLH      S ++  +L+D  AD  
Sbjct: 193 PLYLACENQQRACVKKLLESGA-DVN--QGKGQDSPLHAVVRTASEELACLLMDFGADTQ 249

Query: 348 VRTVDGVTPLDI 359
            +  +G  P+++
Sbjct: 250 AKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +H A  +  +  ++ L+  G   VN        +PLH A        V +LL H A  N
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGW-AVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 348 VRTVDGVTPL 357
             T D  TPL
Sbjct: 120 GVTADWHTPL 129

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A  + S + V  LL+ GA  V         +P+H AA     + V  L+ +  + +
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGA-SVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNID 184

Query: 348 VRTVDGVTPL 357
            +     TPL
Sbjct: 185 HKISHLGTPL 194

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.8 bits (159), Expect = 7e-12
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A        VK LL+ GA  VN        TPL  A    S D V +LL H A   
Sbjct: 95  PLHEACLGGHLSCVKILLKHGA-QVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152

Query: 348 VRTVDGVTPL 357
             + D  +P+
Sbjct: 153 PES-DLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 278 GEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVA 337
           G+   +D +            +     L       +     +  +P+H AA       + 
Sbjct: 26  GKQGGMDGSKPAGPR------DFPGIRLLSNPLMGD---AVSDWSPMHEAAIHGHQLSLR 76

Query: 338 VLLDHHADPNVRTVDGVTPL 357
            L+      N+ T D V+PL
Sbjct: 77  NLISQGWAVNIITADHVSPL 96

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH  V   S E+   L++ GA D        GK P+ +     SP     L    A   
Sbjct: 225 PLHAVVRTASEELACLLMDFGA-DTQA-KNAEGKRPVELVPPE-SPLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 12/70 (17%)

Query: 292 AVENCSREVVKALLELGAADVN----YPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
              +        L+  G + +        G  G  P              + L  +    
Sbjct: 2   GSSHHHHHHSSGLVPRG-SHMASMDGKQGGMDGSKPAGPRDF------PGIRLLSNPL-M 53

Query: 348 VRTVDGVTPL 357
              V   +P+
Sbjct: 54  GDAVSDWSPM 63

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 76.7 bits (190), Expect = 5e-16
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH+A  N   ++VK  +  GA  V+   G    TPLH A       MV  L+ + ADP+
Sbjct: 45  LLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103

Query: 348 VRTVDGVTPL 357
           +   +G + +
Sbjct: 104 LIDGEGCSCI 113

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 4e-14
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 288 ALHYAVENC-SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADP 346
            L +A     S +  + LL      VN        T LH A    +  ++++LL+  A+ 
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNV-SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV 203

Query: 347 NVRTVDGVTPLDI 359
           + + + G + LD+
Sbjct: 204 DAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 4e-14
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH+A       +V  L++ GA D +      G + +H+AA+     +VA L+    D +
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGA-DPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136

Query: 348 VRTVDGVTPL 357
           +   +G+TPL
Sbjct: 137 MMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +  A +    E  + L+E G  DV         T LH AA     D+V   +   A  +
Sbjct: 12  DIVKATQYGIYERCRELVEAGY-DVRQ-PDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69

Query: 348 VRTVD-GVTPL 357
               D   TPL
Sbjct: 70  QLGGDLNSTPL 80

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV-SPDMVAVLLDHHADP 346
            +H A +     +V  L+  G  DV+      G TPL  AA    S D   +LL  +   
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQ-DVDM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

Query: 347 NVRT-VDGVTPL 357
           N+       T L
Sbjct: 170 NLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH+AV   +  V+  LLE GA +V+      G++ L +A +  +  M+  L +      
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGA-NVDAQNI-KGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 6/38 (15%), Positives = 12/38 (31%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
               +  A +    +    L++   D      + VT L
Sbjct: 9   STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLL 46

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.3 bits (184), Expect = 6e-16
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A +    E VK L  + + +     G    TPLH AA      +V  LL H AD +
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 348 VRTVDGVTPL 357
            +   G+ PL
Sbjct: 70  AKDKGGLVPL 79

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 72.8 bits (180), Expect = 2e-15
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 268 DVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNYPAGPA--- 319
           DVE VK +   + +N  +        LH+A       VV+ LL+ GA DV+     A   
Sbjct: 20  DVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-DVH-----AKDK 73

Query: 320 -GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
            G  PLH A      ++  +L+ H A  NV  +   TPL
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 112

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 71.7 bits (177), Expect = 5e-15
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
            LH A      EV + L++ GA  VN            TPLH AA     ++  +LL H 
Sbjct: 78  PLHNACSYGHYEVAELLVKHGA-VVN-----VADLWKFTPLHEAAAKGKYEICKLLLQHG 131

Query: 344 ADPNVRTVDGVTPLDI 359
           ADP  +  DG TPLD+
Sbjct: 132 ADPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 11/61 (18%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
            LH A      E+ K LL+ GA D            G TPL +  +    D+  +L    
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGA-DPT-----KKNRDGNTPLDLVKDG-DTDIQDLLRGDA 163

Query: 344 A 344
           A
Sbjct: 164 A 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 5/49 (10%)

Query: 310 ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPL 357
           A  N          L  AA+    + V  L      +         TPL
Sbjct: 2   AMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL 46

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.4 bits (184), Expect = 7e-16
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +       +   V+  L+    D+N      G +PLH A       +V +L+   A  N
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 348 VRTVDGVTPL 357
           V      TPL
Sbjct: 67  VMNRGDDTPL 76

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 71.3 bits (176), Expect = 9e-15
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  +  R++V+ LL+  A D+N      G  PLH A       +   L+ + A  +
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKA-DINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132

Query: 348 VRTVDGVTPLDI 359
           +    G  P+D 
Sbjct: 133 ICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH+A       VV+ L+  GA  +N        TPLH+AA     D+V  LL + AD N
Sbjct: 42  PLHWACREGRSAVVEMLIMRGA-RINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99

Query: 348 VRTVDGVTPL 357
                G  PL
Sbjct: 100 AVNEHGNVPL 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LHYA      +V + L+  GA  V+      G+ P+  A   +   +         + N
Sbjct: 108 PLHYACFWGQDQVAEDLVANGA-LVSICNK-YGEMPVDKAKAPLRELLRERAEKMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHA-DPNVRTVDGVTPL 357
               +       +   V + LD+   D N     G +PL
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL 43

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 75.5 bits (187), Expect = 1e-15
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +    EVV+ LL  G  DVN      G TP+  A E    D+V +LL   +D N
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138

Query: 348 VRTVDGVTPL 357
           +R  +    L
Sbjct: 139 IRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            + +A E    ++VK LL  G+ D+N          LH AA     D+  +LL    D +
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGS-DINI-RDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171

Query: 348 VRTVDGVTPL 357
              + G +PL
Sbjct: 172 AVNIHGDSPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.5 bits (174), Expect = 5e-14
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH+A  +   ++ + LL     D++      G +PLHIAA     D V + L   +D  
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKC-DLHA-VNIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204

Query: 348 VRTVDGVTPLDI 359
           ++  +G TPL  
Sbjct: 205 LKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 68.2 bits (168), Expect = 4e-13
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A E    ++   L++ GA +++       +TPL  AAE    + V  L+   A  +
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGA-NIDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71

Query: 348 VRTVDGVTPL 357
            +  +G T L
Sbjct: 72  PKDAEGSTCL 81

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.9 bits (162), Expect = 2e-12
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
            L  A EN   E VK L++ GA  V+ P    G T LH+AA+    ++V  LL +   D 
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGA-LVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

Query: 347 NVRTVDGVTPL 357
           N +   G TP+
Sbjct: 105 NCQDDGGWTPM 115

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.3 bits (132), Expect = 1e-08
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
            LH A      + V   L   + DV       G+TPL  A+          +     D
Sbjct: 180 PLHIAARENRYDCVVLFLSRDS-DVTLKNK-EGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.3 bits (111), Expect = 7e-06
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
            ++PLH AAE    D+  +L+   A+ +  + D  TPL
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPL 48

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 53/184 (28%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
            D L  L     F+D    V G+   AH+ ILAARS  F   F      S          
Sbjct: 13  ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESK--------- 63

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHC 131
                         + +N V  EVF  ++ F+Y+G+   +                    
Sbjct: 64  -----------KNRVEINDVEPEVFKEMMCFIYTGKAPNLD------------------- 93

Query: 132 TSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTT 191
                +A D LAAA  + +E+L ++ +  L + +   S+E+  ++LI +   D+H     
Sbjct: 94  ----KMADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILILA---DLHS---- 139

Query: 192 CSHL 195
              L
Sbjct: 140 ADQL 143

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +N   E VK LL  GA DVN      G TPLH+AA+    ++V +LL   AD N
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGA-DVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 348 VRTVDGVTPL 357
            R+ DG TP 
Sbjct: 70  ARSKDGNTPE 79

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 68.9 bits (170), Expect = 2e-14
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +N   E+VK LL  GA DVN      G TP H+A +    ++V +L    AD N
Sbjct: 45  PLHLAAKNGHAEIVKLLLAKGA-DVN-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102

Query: 348 VRTVDGVTPL 357
            R+       
Sbjct: 103 ARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 19/38 (50%), Positives = 22/38 (57%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G TPLH AA+    + V  LL   AD N R+ DG TPL
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL 46

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH 325
             H A +N   E+VK L   GA DVN           H
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKGA-DVNA-RSWGSSHHHH 113

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 46/181 (25%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
            D L  L     F+D    V G+   AH+ ILAARS  F   F      S          
Sbjct: 22  ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESK--------- 72

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHC 131
                         + +N V  EVF  ++ F+Y+G+   +                    
Sbjct: 73  -----------KNRVEINDVEPEVFKEMMCFIYTGKAPNLD------------------- 102

Query: 132 TSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTT 191
                +A D LAAA  + +E+L ++ +  L + +   S+E+  ++LI +      QL T 
Sbjct: 103 ----KMADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILILADLHSADQLKTQ 155

Query: 192 C 192
            
Sbjct: 156 A 156

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL++A     +++V+ L      ++N      G T LH AA     D+V +LL   A  +
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

Query: 348 VRTVDGVTPLDI 359
           +R ++     D+
Sbjct: 168 LRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH-ADP 346
            LH A +  +   ++  L+     VN     AG T L+ A      D+V +L      + 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRV-GVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL 133

Query: 347 NVRTVDGVTPL 357
           N +   G T L
Sbjct: 134 NQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH A      ++V+ LL  GA   +       K    +A       ++       A   
Sbjct: 143 ALHAAAWKGYADIVQLLLAKGA-RTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRT 200

Query: 348 VRTVDGVTPL 357
           +   +     
Sbjct: 201 LSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 262 RALDSSDVELVKLMVMGEG----LNLDEALALHYAVENCSREVVKALLELGAADVNYPAG 317
           RAL + +      + + EG    +                  ++ +      A+      
Sbjct: 18  RALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE------ 71

Query: 318 PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
            +   PLH AA+  +   +   LD+    N     G T L
Sbjct: 72  -SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 7/38 (18%), Positives = 9/38 (23%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G+  +  A     P     L     D    T    T  
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNW 49

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.4 bits (184), Expect = 2e-15
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH-ADP 346
            LH A    S ++++ L  LG + VN+     G TPL  A      D   +L++ + A+ 
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201

Query: 347 NVRTVDGVTPLDI 359
           ++    G    D+
Sbjct: 202 DLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.2 bits (173), Expect = 6e-14
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYP--AGPAGKTPLHIAAEMVSPDMVAVLLDHH-- 343
            LH++V   + E+   LL     +VN       +G TP HIA  + + ++V  L D    
Sbjct: 39  PLHWSVSFQAHEITSFLLSKME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97

Query: 344 ADPNVRTVDGVTPL 357
            D N  T  GVT L
Sbjct: 98  PDLNKITNQGVTCL 111

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.8 bits (172), Expect = 8e-14
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 288 ALHYAVENCSREVVKALLELGA-ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADP 346
             H A    + EVVK+L +     D+N      G T LH+A      ++   L+++ A  
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGASV 133

Query: 347 NVRTVDGVTPL 357
            ++      PL
Sbjct: 134 RIKDKFNQIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 3e-13
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH-ADP 346
            LH AV     EV + L+E GA  V        + PLH AA + S  ++ +L     +  
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGA-SVR-IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167

Query: 347 NVRTVDGVTPL 357
           N +   G TPL
Sbjct: 168 NWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A        V+ LL    + +       G+ PLH +    + ++ + LL    + N
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 348 VRTV---DGVTPL 357
           +       G TP 
Sbjct: 64  LDDYPDDSGWTPF 76

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH 342
            L +A+     +    L+E   A+ +      G     +A       +    L++
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDL-VDNKGAKAEDVALNE---QVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 320 GKTPLHIAAEMVSPDMVA-VLLDHHADPNVRTVDGVTPL 357
              PLH A        V  +L    +    +  DG  PL
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL 40

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 288 ALHYAVENCSREVVKALLELGAADVN------------YPAGPAGKTPLHIAAEMVSPDM 335
           ALH AV N +  +V+ALL  GA  V+            +     G+ PL  AA + S ++
Sbjct: 78  ALHIAVINQNVNLVRALLARGA-SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136

Query: 336 VAVLLDHHADPNVRTVDGVTPLDI 359
           V +L++H AD   +   G T L I
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLHI 160

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD-- 345
            L  A +    + +  LL+    +V+   G  G+T LHIAA   + +   VL++   +  
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 346 ---PNVRTVDGVTPL 357
                    +G T L
Sbjct: 65  FEPMTSELYEGQTAL 79

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
           ALH A    + E    L+E    ++ +    +    G+T LHIA    + ++V  LL   
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAP-ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98

Query: 344 ADPNVRTVDGVTPLDI 359
           A  + R    V     
Sbjct: 99  ASVSARATGSVFHYRP 114

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE----MVSPDMVAVLLDHH 343
            L +A    S E+V+ L+E GA D+       G T LHI         +  M  +LL + 
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGA-DIR-AQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181

Query: 344 ADPNVRTV------DGVTPLDI 359
              +++++       G+TP  +
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 320 GKTPLHIAAEMVSPDMVAVLL-DHHADPNVRTVDGVTPL 357
            ++PL +AA+      ++ LL     + + R   G T L
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.0 bits (178), Expect = 3e-15
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      + V+ L+  GA          G +PLH+AA+        VLL      +
Sbjct: 5   KLLEAARAGQDDEVRILMANGA-PFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 348 VRTVDGVTPL 357
            RT    TPL
Sbjct: 62  ARTKVDRTPL 71

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.0 bits (178), Expect = 3e-15
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A       +V+ LL+ GA DVN        T LH A E    ++V +L+ + AD +
Sbjct: 70  PLHMAASEGHANIVEVLLKHGA-DVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 348 VRTVDGVTPLDI 359
            ++    T  DI
Sbjct: 128 TQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.5 bits (174), Expect = 9e-15
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +       + LL  G    +       +TPLH+AA     ++V VLL H AD N
Sbjct: 37  PLHLAAQYGHFSTTEVLLRAGV-SRDA-RTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94

Query: 348 VRTVDGVTPL 357
            + +  +T L
Sbjct: 95  AKDMLKMTAL 104

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVL 339
           ALH+A E+  +EVV+ L++ GA DV+       KT   I+ +  + D+  +L
Sbjct: 103 ALHWATEHNHQEVVELLIKYGA-DVHT-QSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
               L  AA     D V +L+ + A        G +PL
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPL 38

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.8 bits (185), Expect = 3e-15
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  AV+N   ++V+ LLE GA +VN+     G TPLH A +M   D+V +LL H ADP 
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 348 VRTVDGVTPL 357
           +R  +G TP 
Sbjct: 67  LRKKNGATPF 76

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 6e-14
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH AV+    ++V+ LL  GA D        G TP  +AA   S  ++ + L   AD N
Sbjct: 42  PLHNAVQMSREDIVELLLRHGA-DPVL-RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

Query: 348 VRTVDGVTPL 357
                G T  
Sbjct: 100 ECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 288 ALHYAVENCSREVVKALLELGAADVN---------YPAGPAGKTPLHIAAEMVSPDMVAV 338
           A   A      + +K L + GA +VN               G T L  AAE    +++ +
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGA-NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 339 LLDHH-ADPNVRTVDGVTPL 357
           LLD   AD N     G   L
Sbjct: 167 LLDEMGADVNACDNMGRNAL 186

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 2e-12
 Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPD----MVAVLLDHH 343
           AL  A E    EV+K LL+   ADVN      G+  L  A           +  +LLDH 
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 344 ADPNVRTVDGVTPL 357
           AD NVR   G TPL
Sbjct: 210 ADVNVRGERGKTPL 223

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  AVE     +V+ LLE    ++N      GKT L +A E+    +  +L    A  +
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEIND-TDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

Query: 348 VR 349
             
Sbjct: 281 CG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 12/100 (12%)

Query: 270 ELVKLMVMGEGLNLDEA-----LALHYAVENCSR----EVVKALLELGAADVNYPAGPAG 320
           E++K+++   G +++        AL +A+ +        +   LL+ GA DVN   G  G
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVN-VRGERG 219

Query: 321 KTPLHIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPLDI 359
           KTPL +A E     +V  LL+    + N    DG T L +
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.3 bits (150), Expect = 1e-10
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
               A    S +++K  L  GA DVN      G T    AA       +  L    A+ N
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGA-DVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 348 VR----------TVDGVTPL 357
           +R             G T L
Sbjct: 133 LRRKTKEDQERLRKGGATAL 152

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVD-GVTPL 357
               L  A +    D+V  LL+  A+ N +  + G TPL
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL 43

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.5 bits (174), Expect = 6e-15
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 268 DVELVKLMVMGEGLNLDEAL-----ALHYAVENCSREVVKALLELGAADVNYPAGPAGKT 322
           D++ VK  V  +G +++  L      LHYA +    E+++ LL  GA D+N        T
Sbjct: 19  DLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DINA-PDKHHIT 75

Query: 323 PLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           PL  A        V +LL   AD  V+  DG+T  + 
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 67.4 bits (166), Expect = 6e-14
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
              +A++N   + VK  +  G  DVN      G+ PLH AA+    +++  LL   AD N
Sbjct: 10  EFMWALKNGDLDEVKDYVAKG-EDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 348 VRTVDGVTPL 357
                 +TPL
Sbjct: 68  APDKHHITPL 77

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 2/42 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE 329
            L  AV       VK LL  GA D     GP G T       
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGA-DKTV-KGPDGLTAFEATDN 115

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 10/43 (23%), Positives = 12/43 (27%)

Query: 315 PAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           P G         A +    D V   +    D N     G  PL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL 44

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.0 bits (178), Expect = 6e-15
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
           AL +AV+N    + + LL  G+ +VN          GKTPL  +      +M   LL+H 
Sbjct: 71  ALIWAVKNNRLGIAEKLLSKGS-NVN-----TKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 344 ADPNVRTVDGVTPL 357
           A+ N R ++G TPL
Sbjct: 125 ANVNDRNLEGETPL 138

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
            L +++     E+   LLE GA +VN          G+TPL +A++    ++V  LL+  
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHGA-NVN-----DRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 344 ADPNVRTVDGVTPLDI 359
           AD + R + G+T    
Sbjct: 158 ADISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.4 bits (166), Expect = 3e-13
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 10/74 (13%)

Query: 288 ALHYAVENCSREVVKALLELGAADVN----YPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
            L  A        +  L+E     +           G T L  A +     +   LL   
Sbjct: 38  PLMVACMLGMENAIDKLVENFD-KLEDKDIE-----GSTALIWAVKNNRLGIAEKLLSKG 91

Query: 344 ADPNVRTVDGVTPL 357
           ++ N +   G TPL
Sbjct: 92  SNVNTKDFSGKTPL 105

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 56.2 bits (137), Expect = 2e-09
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
                 E    + +  L      D         +TPL +A  +   + +  L+++     
Sbjct: 11  VEKIKDEKSINQNLDFLRN--YRDSY------NRTPLMVACMLGMENAIDKLVENFDKLE 62

Query: 348 VRTVDGVTPL 357
            + ++G T L
Sbjct: 63  DKDIEGSTAL 72

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 55.5 bits (135), Expect = 4e-09
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA----GKTPLHIAAEMVSPDMVAVLLDHH 343
            L  A +    E+VK LLELGA D++     A    G T    A      +++ +  +  
Sbjct: 137 PLIVASKYGRSEIVKKLLELGA-DIS-----ARDLTGLTAEASARIFGRQEVIKIFTEVR 190

Query: 344 A 344
            
Sbjct: 191 R 191

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.7 bits (177), Expect = 6e-15
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL  A      ++VK LL+ G  DVN      G TPL  A        V +LL+  ADP 
Sbjct: 72  ALSLACSKGYTDIVKMLLDCGV-DVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129

Query: 348 VRTVDGVTPLDI 359
           + T  G   +D+
Sbjct: 130 IETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L +A  +    VV+ LL+ GA D     G   ++ L +A      D+V +LLD   D N
Sbjct: 39  PLMWAAAHGQIAVVEFLLQNGA-DPQ-LLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96

Query: 348 VRTVDGVTPL 357
               +G TPL
Sbjct: 97  EYDWNGGTPL 106

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 68.2 bits (168), Expect = 8e-14
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ++H          +   +E     +N+     G TPL  AA      +V  LL + ADP 
Sbjct: 6   SVHQLAAQGEMLYLATRIEQEN-VINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 348 VRTVDGVTPL 357
           +      + L
Sbjct: 64  LLGKGRESAL 73

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.1 bits (147), Expect = 6e-11
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L YAV     + VK LLE GA D       +G   + +A  +    +  V+  H     
Sbjct: 105 PLLYAVHGNHVKCVKMLLESGA-DPTI-ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

Query: 348 VRTVD 352
               +
Sbjct: 163 QNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           A    +H  A       +A  ++     N    +G TPL
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL 40

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           +L        R+     +  G   V     P     L  ++     D+V  ++    DP+
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGM-RVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64

Query: 348 VRTVDGVTPL 357
           +   +G+T L
Sbjct: 65  LPNDEGITAL 74

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  +      ++V+ ++     D + P    G T LH A      ++V  L+    + N
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVD-DPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVNVN 97

Query: 348 VRTVDGVTPL 357
               DG TPL
Sbjct: 98  AADSDGWTPL 107

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 3/72 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNY--PAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
            LH A    + +V K L+E GA  V     +            E         L      
Sbjct: 106 PLHCAASCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164

Query: 346 PNVRTVDGVTPL 357
             +     +  L
Sbjct: 165 MGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH AV     E+VK L++ G  +VN      G TPLH AA   +  +   L++  A   
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGV-NVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 348 VRTV-DGVTPLDI 359
             T  D  T  D 
Sbjct: 131 AMTYSDMQTAADK 143

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 10/88 (11%), Positives = 23/88 (26%), Gaps = 15/88 (17%)

Query: 286 ALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA-----EMVSPDMVAVLL 340
           A      +E    +  + L  +    +           L         E+   +   + +
Sbjct: 140 AADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKG-VIYALWDYEPQNDDELPMKEGDCMTI 197

Query: 341 DHHADPNVR--------TVDGVTPLDIL 360
            H  D +            +G  P ++L
Sbjct: 198 IHREDEDEIEWWWARLNDKEGYVPRNLL 225

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 69.7 bits (172), Expect = 9e-15
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  N   EVVK LLE GA DVN      G+TPLH+AA     ++V +LL+  AD N
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGA-DVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 348 VRTVDGVTPL 357
            +  +G TPL
Sbjct: 63  AKDKNGRTPL 72

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  N   EVVK LLE GA DVN      G+TPLH+AA     ++V +LL+  AD N
Sbjct: 38  PLHLAARNGHLEVVKLLLEAGA-DVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95

Query: 348 VRTVDGVTPL 357
            +  +G TPL
Sbjct: 96  AKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 54.3 bits (132), Expect = 3e-09
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
            LH A  N   EVVK LLE GA DVN      G+TPLH+AA     ++V +LL+  A
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGA-DVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.0 bits (113), Expect = 8e-07
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G+TPLH+AA     ++V +LL+  AD N +  +G TPL
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH A      EV+K L++    DVN      G TPLH AA     +   +L+++  D  
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARY-DVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDME 259

Query: 348 VRTVDGVTPLDI 359
                G T  D+
Sbjct: 260 AVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.8 bits (177), Expect = 5e-14
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 268 DVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNYPAGPAGKT 322
           D E V  ++   G +++ A      ALH A  + + ++VK L+E GA ++N      G  
Sbjct: 52  DTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA-NIN-QPDNEGWI 108

Query: 323 PLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           PLH AA     D+   L+   A       +G TPLDI
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 270 ELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE 329
           EL++  V  +G++++ A           R+  + L      +       +G T LH+AA 
Sbjct: 153 ELLQNEVNRQGVDIEAAR--KEEERIMLRDARQWLNSGHI-NDV-RHAKSGGTALHVAAA 208

Query: 330 MVSPDMVAVLLDHHADPNVRTVDGVTPL 357
               +++ +L+    D N++  DG TPL
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 8/76 (10%)

Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
           N +    L  A E    E+++  +     D+                 ++  D    L  
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEEERIMLRDARQWLNS 187

Query: 342 HHADPNVRTVDGVTPL 357
            H +       G T L
Sbjct: 188 GHINDVRHAKSGGTAL 203

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.1 bits (144), Expect = 7e-10
 Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
                    S   ++  +                     A      + V  LL+  AD N
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRK-KTK--VKFDDGAVFLAACSSGDTEEVLRLLERGADIN 67

Query: 348 VRTVDGVTPL 357
              VDG+T L
Sbjct: 68  YANVDGLTAL 77

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A      E  + L+E    D+       G+T   +A E +   +  +    +   +
Sbjct: 235 PLHAAAHWGKEEACRILVENLC-DMEA-VNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 6/38 (15%), Positives = 11/38 (28%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
            K    +   + S   +   +       V+  DG   L
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL 45

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 1e-14
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH-HADP 346
              YA      E++  +L+    D+N      G   L  AAE    D V +LL+    D 
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLNK-HNRYGGNALIPAAEKGHIDNVKLLLEDGREDI 133

Query: 347 NVRTVDGVTPL 357
           + +   G T L
Sbjct: 134 DFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 1e-14
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSP-----DMVAVLLDH 342
           AL  A E    + VK LLE G  D+++     G T L  A  +        D+V +L+++
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167

Query: 343 HADPNVRTVDGVTPLDI 359
            AD +++   G T +D 
Sbjct: 168 GADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.9 bits (162), Expect = 1e-12
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A +  +++V + L +     V+      G TPL+IA      ++   L+D  AD N
Sbjct: 9   LLEAANQRDTKKVKEILQDTTY-QVD-EVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 348 VRTVDGVTPL 357
           ++     +P 
Sbjct: 67  LQNSISDSPY 76

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 63.2 bits (155), Expect = 8e-12
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
            L+ AV N   E+ KAL++ GA D+N        +P   A      +++A +L H   D 
Sbjct: 42  PLNIAVHNNDIEIAKALIDRGA-DIN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99

Query: 347 NVRTVDGVTPL 357
           N     G   L
Sbjct: 100 NKHNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 288 ALHYAV-----ENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH 342
           AL  AV         +++VK L+E GA D +     +G+T +  A +    ++  +L  +
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMENGA-DQSI-KDNSGRTAMDYANQKGYTEISKILAQY 200

Query: 343 H 343
           +
Sbjct: 201 N 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.9 bits (110), Expect = 8e-06
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
               L  A +  +  +  +L D     +    +G TPL
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL 43

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  N   E+V+ LL+ GA DVN     AG TPL +AA     ++V VLL + AD N
Sbjct: 50  PLHLAAFNGHLEIVEVLLKNGA-DVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107

Query: 348 VRTVDGVTPL 357
              ++G TPL
Sbjct: 108 ANDMEGHTPL 117

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 69.3 bits (171), Expect = 4e-14
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      E+V+ LL+ GA DVN      G TPLH+AA     ++V VLL + AD N
Sbjct: 83  PLRLAALFGHLEIVEVLLKNGA-DVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140

Query: 348 VRTVDGVTPLDI 359
            +   G T  DI
Sbjct: 141 AQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.2 bits (168), Expect = 9e-14
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      + V+ L+  GA DVN     +G TPLH+AA     ++V VLL + AD N
Sbjct: 17  KLLEAARAGRDDEVRILMANGA-DVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 348 VRTVDGVTPL 357
                G+TPL
Sbjct: 75  AVDHAGMTPL 84

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.7 bits (128), Expect = 2e-08
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH 342
            LH A      E+V+ LL+ GA DVN      GKT   I+ +  + D+  +L   
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGA-DVNA-QDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.7 bits (115), Expect = 1e-06
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 309 AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
            +  ++  G      L  AA     D V +L+ + AD N     G TPL
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPL 51

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 1e-14
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A    + ++VK LL+  A DVN      G +PLH AA+    D+V +LL + A PN
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQA-DVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 348 VRTVDGVTPLDI 359
             + DG TPL I
Sbjct: 372 EVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +    EV ++LL+ G    N      G TPLH+AA+    +MVA+LL   A+ N
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGG-SANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272

Query: 348 VRTVDGVTPL 357
           +    G+TPL
Sbjct: 273 LGNKSGLTPL 282

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH   +     V   L++ G   V+      G TPLH+A+   +  +V  LL H AD N
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGV-MVD-ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 348 VRTVDGVTPL 357
            +T  G +PL
Sbjct: 339 AKTKLGYSPL 348

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.7 bits (182), Expect = 3e-14
 Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A       +VK LLE  A + N  A  AG TPLHIAA     + V  LL+  A   
Sbjct: 83  PLHCAARIGHTNMVKLLLENNA-NPNL-ATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 348 VRTVDGVTPL 357
             T  G TPL
Sbjct: 141 CMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 4e-14
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A      EV K LL+  A  VN  A    +TPLH AA +   +MV +LL+++A+PN
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKA-KVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPN 107

Query: 348 VRTVDGVTPL 357
           + T  G TPL
Sbjct: 108 LATTAGHTPL 117

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 5e-14
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH AV + + ++VK LL  G    + PA   G TPLHIAA+    ++   LL +    N
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGG-SPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 348 VRTVDGVTPLDI 359
             +V GVTPL +
Sbjct: 240 AESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 9e-14
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A       +VK LL+ GA   N  +    +TPLH+AA     ++   LL + A  N
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGA-SPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74

Query: 348 VRTVDGVTPL 357
            +  D  TPL
Sbjct: 75  AKAKDDQTPL 84

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 9e-14
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A      E V ALLE  A          G TPLH+AA+     +  +LL+  A PN
Sbjct: 116 PLHIAAREGHVETVLALLEKEA-SQAC-MTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173

Query: 348 VRTVDGVTPL 357
               +G+TPL
Sbjct: 174 AAGKNGLTPL 183

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +    E+V  LL   A + N     +G TPLH+ A+     +  VL+ H    +
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQA-NGNL-GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 348 VRTVDGVTPL 357
             T  G TPL
Sbjct: 306 ATTRMGYTPL 315

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.2 bits (173), Expect = 3e-13
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +     V + LLE  A   N  AG  G TPLH+A    + D+V +LL     P+
Sbjct: 149 PLHVAAKYGKVRVAELLLERDA-HPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206

Query: 348 VRTVDGVTPL 357
               +G TPL
Sbjct: 207 SPAWNGYTPL 216

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.1 bits (152), Expect = 2e-10
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVL---LDHHA 344
            LH A +    ++V  LL+ GA   N  +   G TPL IA  +    +  VL    D  +
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGA-SPNEVSS-DGTTPLAIAKRLGYISVTDVLKVVTDETS 404

Query: 345 DPNVRTVDGVTPLDILRTLTS 365
              V     ++  + +  +  
Sbjct: 405 FVLVSDKHRMSFPETVDEILD 425

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.0 bits (131), Expect = 6e-08
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 310 ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
                  G +G TPLH+A+ M    +V  LL   A PNV  V   TPL
Sbjct: 5   ISGGG-GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL 51

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 12/67 (17%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
            L  A       V   L  +    + V   +     +      E         +LD   D
Sbjct: 380 PLAIAKRLGYISVTDVLKVVTDETSFVL-VSDKHRMSFPETVDE---------ILDVSED 429

Query: 346 PNVRTVD 352
                + 
Sbjct: 430 EGEELIS 436

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A E    +V++ L + GA  +N      G+T LH AA         +LL + +DP+
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGA-KMN-ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307

Query: 348 VRTVDGVTPLDI 359
           + ++ G T   +
Sbjct: 308 IISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.9 bits (180), Expect = 3e-14
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A      EV + LL+ GA  VN        TPLH AA     ++ ++LL H ADP 
Sbjct: 94  PLHNACSYGHYEVTELLLKHGA-CVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151

Query: 348 VRTVDGVTPLDI 359
           +    G + +D+
Sbjct: 152 LVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.0 bits (175), Expect = 2e-13
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A       +V+ LL+ GA DV+      G  PLH A      ++  +LL H A  N
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGA-DVHA-KDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118

Query: 348 VRTVDGVTPL 357
              +   TPL
Sbjct: 119 AMDLWQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 288 ALHYAVENC---SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
           ALH AV +     ++V + LL  GA +VN        TPLH+AAE    D++ VL  H A
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGA-NVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGA 271

Query: 345 DPNVRTVDGVTPL 357
             N     G T L
Sbjct: 272 KMNALDSLGQTAL 284

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      +++  L  L   + +  +     TPLH+AA      +V +LL H AD +
Sbjct: 28  LLEAARSGNEEKLMALLTPLNV-NCHA-SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85

Query: 348 VRTVDGVTPL 357
            +   G+ PL
Sbjct: 86  AKDKGGLVPL 95

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 283 LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE---MVSPDMVAVL 339
             +  +L  A        VK  L L   +   P     +T LH A          +  +L
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS--HETALHCAVASLHPKRKQVAELL 233

Query: 340 LDHHADPNVRTVDGVTPL 357
           L   A+ N +  D +TPL
Sbjct: 234 LRKGANVNEKNKDFMTPL 251

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 7/66 (10%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH A      +  + LL  G+ D +      G T   +  E      V  +L       
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGS-DPS-IISLQGFTAAQMGNE-----AVQQILSESTPMR 335

Query: 348 VRTVDG 353
              VD 
Sbjct: 336 TSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.0 bits (144), Expect = 1e-09
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 23/91 (25%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA-----EMVS---------- 332
            LH A      EV   LL  GA D        GK+ + +A      E ++          
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGA-DPT-LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

Query: 333 ------PDMVAVLLDHHADPNVRTVDGVTPL 357
                    V   L        +     T L
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETAL 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 299 EVVKALLELGAADVNYPAGPAGKTPLHIAAEMV-SPDMVAVLLDHHADPNVRTVDGVTPL 357
           +    L +  A  V    G   K  L  AA       ++A+L   + + +       TPL
Sbjct: 5   KSALDLADPSAKAVL--TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 2/78 (2%)

Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
            +     +  A +   +EV++ L E    +V   +   G        +  +P +  + L 
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEKLD-EVV-RSLNTGAGGAVKRKKKAAPAVKRMKLA 344

Query: 342 HHADPNVRTVDGVTPLDI 359
             A    R+        +
Sbjct: 345 PSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 288 ALHYAVENCSREVVKALLELGA----ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
            L  A+E  +RE +  +++         ++Y     G + LH A  +   D+    ++  
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVAMRFVEMG 234

Query: 344 ADPNVRTVDGVTPL 357
            D N+   +   PL
Sbjct: 235 IDVNMEDNEHTVPL 248

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.7 bits (161), Expect = 7e-12
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +H A      + V+ L+E G           G T LH+A +    D    L       +
Sbjct: 23  KIHVAARKGQTDEVRRLIETGV-SPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80

Query: 348 VRTVDGVTPL 357
           +    G  P+
Sbjct: 81  LW--HGQKPI 88

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH+A+     +V    +E+G  DVN         PL+++       +   LL       
Sbjct: 214 HLHWAILINWEDVAMRFVEMGI-DVNMEDN-EHTVPLYLSVRAAMVLLTKELLQKTDVFL 271

Query: 348 VRTV---DGVTPL 357
           ++     +G T L
Sbjct: 272 IQACPYHNGTTVL 284

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 288 ALHYAVE--NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD---- 341
           ALH+ V       E++K L++LGA         A +TPL  A E  + + + +++D    
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGA-SPTA-KDKADETPLMRAMEFRNREALDLMMDTVPS 198

Query: 342 -HHADPNVRTVDGVTPL 357
                 +     G + L
Sbjct: 199 KSSLRLDYANKQGNSHL 215

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 10/72 (13%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM--VSPDMVAVLLDHHAD 345
                 E   REV +    +            G+T LH    +     +M+ +L+   A 
Sbjct: 114 PESLLNECDEREVNEIGSHVKHCK--------GQTALHWCVGLGPEYLEMIKILVQLGAS 165

Query: 346 PNVRTVDGVTPL 357
           P  +     TPL
Sbjct: 166 PTAKDKADETPL 177

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 14/72 (19%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPA--GKTPLHIAAEMVSPDMVAVLLDHHAD 345
           ALH A +    +  K L  +G    +        G+ P+H+A      D+V  L++   +
Sbjct: 56  ALHLACKFGCVDTAKYLASVGE-VHS-----LWHGQKPIHLAVMANKTDLVVALVEGAKE 109

Query: 346 PNVRTVDGVTPL 357
                  G  P 
Sbjct: 110 ------RGQMPE 115

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 14/70 (20%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +H AV     ++V AL+E             G+ P  +  E    ++           +
Sbjct: 87  PIHLAVMANKTDLVVALVEGAKER--------GQMPESLLNECDEREVN------EIGSH 132

Query: 348 VRTVDGVTPL 357
           V+   G T L
Sbjct: 133 VKHCKGQTAL 142

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 303 ALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           ++ +    +    +       +H+AA     D V  L++    P ++   G T L
Sbjct: 4   SMTDFPKLNRIK-SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL 57

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 4/40 (10%), Positives = 10/40 (25%), Gaps = 2/40 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA 327
                 +  +  V +  L   A  V      +      ++
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSA-PVRT-RSRSRARSSAVS 363

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  N   EVVK LLE GA DVN      G+TPLH+AA     ++V +LL+  AD N
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGA-DVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 348 VRTVDGVTPL 357
            +  +G TPL
Sbjct: 63  AKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
            LH A  N   EVVK LLE GA DVN      G+TPLH+AA     ++V +LL+  A
Sbjct: 38  PLHLAARNGHLEVVKLLLEAGA-DVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 47.3 bits (114), Expect = 3e-07
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G+TPLH+AA     ++V +LL+  AD N +  +G TPL
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 39

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.1 bits (173), Expect = 2e-14
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL  A      ++V  LLE    D+N      G TPL  A        V  LL   AD  
Sbjct: 72  ALSLASTGGYTDIVGLLLERDV-DINI-YDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129

Query: 348 VRTVDGVTPLDI 359
                G TP+D+
Sbjct: 130 TEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L +A      E V+ LLE GA D +       ++ L +A+     D+V +LL+   D N
Sbjct: 39  PLIWASAFGEIETVRFLLEWGA-DPHI-LAKERESALSLASTGGYTDIVGLLLERDVDIN 96

Query: 348 VRTVDGVTPL 357
           +   +G TPL
Sbjct: 97  IYDWNGGTPL 106

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 69.4 bits (171), Expect = 4e-14
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L YAV     + V+ALL  GA D+      +G TP+ +A  +    +  V+ +H     
Sbjct: 105 PLLYAVRGNHVKCVEALLARGA-DLTT-EADSGYTPMDLAVALGYRKVQQVIENHILKLF 162

Query: 348 VRTVDGVTP 356
              +    P
Sbjct: 163 QSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ++H        + +K  L  G   VN      G TPL  A+     + V  LL+  ADP+
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 348 VRTVDGVTPL 357
           +   +  + L
Sbjct: 64  ILAKERESAL 73

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 1/39 (2%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHAD-PNVRTVDGVTPL 357
               +H  A     D +   L    +  N     G TPL
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL 40

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.3 bits (171), Expect = 2e-14
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L+ A  +   E+V+ LL+ GA DVN      G TPLH+AA +   ++  VLL H AD N
Sbjct: 50  PLYLATAHGHLEIVEVLLKNGA-DVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107

Query: 348 VRTVDGVTPLDI 359
            +   G T  DI
Sbjct: 108 AQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.8 bits (167), Expect = 6e-14
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      + V+ L+  GA DVN      G TPL++A      ++V VLL + AD N
Sbjct: 17  KLLEAARAGQDDEVRILMANGA-DVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74

Query: 348 VRTVDGVTPL 357
                G TPL
Sbjct: 75  AVDAIGFTPL 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.2 bits (129), Expect = 8e-09
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
            LH A      E+ + LL+ GA DVN      GKT   I+    + D+  +L   +
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGA-DVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.4 bits (114), Expect = 7e-07
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 309 AADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
            +  ++  G      L  AA     D V +L+ + AD N +   G+TPL
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPL 51

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           A +YA+ + +  +V  LL  GA   N       + PLH AA +    +V +LL    D +
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGA-LKNLLEN---EFPLHQAATLEDTKIVKILLFSGLDDS 89

Query: 348 VRTVDGVTPL 357
                G T L
Sbjct: 90  QFDDKGNTAL 99

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           + ++AV      +V   L    +           + +HI  +    DM+ +LLD+    N
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 348 VRTVDGVTPL 357
                   P 
Sbjct: 189 TNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL+YAV++ + + VK  ++     + +      KT  + A  +    +V+  L       
Sbjct: 98  ALYYAVDSGNMQTVKLFVKKNW-RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-T 155

Query: 348 VRTVDGVTPL 357
                 ++ +
Sbjct: 156 FDLAILLSCI 165

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A      ++VK LL  G  D +      G T L+ A +  +   V + +  +    
Sbjct: 65  PLHQAATLEDTKIVKILLFSGL-DDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM 122

Query: 348 VRTVDGV-TPLDI 359
                G  T    
Sbjct: 123 FYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.5 bits (153), Expect = 5e-11
 Identities = 6/70 (8%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +  A++N   E+++AL +    ++         +       +   ++  ++++ H +  
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDI-NIY--------SANLENVLLDDAEIAKMIIEKHVEYK 248

Query: 348 VRTVDGVTPL 357
             +      +
Sbjct: 249 SDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP-LHIAAEMVSPDMVAVLLDHHADP 346
            +H  ++N   +++  LL+      N         P + +A +    +M+  L  +  + 
Sbjct: 164 CIHITIKNGHVDMMILLLDYMT-STNTNNS-LLFIPDIKLAIDNKDIEMLQALFKYDINI 221

Query: 347 NVRTVDGVTP--LDILRTLTSDFLFKGA 372
               ++ V     +I + +      K  
Sbjct: 222 YSANLENVLLDDAEIAKMIIE----KHV 245

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 69.4 bits (171), Expect = 3e-14
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +H A      + +K L+E GA DVN P G  G  P+H+A +     +V+ L    +D +
Sbjct: 71  PVHDAARTGFLDTLKVLVEHGA-DVNVPDG-TGALPIHLAVQEGHTAVVSFLA-AESDLH 127

Query: 348 VRTVDGVTPLDI 359
            R   G+TPL++
Sbjct: 128 RRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL   +   S  +   LL+ GA   N     +G +P+H AA     D + VL++H AD N
Sbjct: 39  ALQVMMFG-STAIALELLKQGA-SPNV-QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95

Query: 348 VRTVDGVTPL 357
           V    G  P+
Sbjct: 96  VPDGTGALPI 105

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.6 bits (156), Expect = 3e-12
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      + V+ LL       +      GKT L +     S  +   LL   A PN
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQVMMFG-STAIALELLKQGASPN 62

Query: 348 VRTVDGVTPL 357
           V+   G +P+
Sbjct: 63  VQDTSGTSPV 72

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH 342
            +H AV+     VV  L     +D++      G TPL +A +  + D+V +L  H
Sbjct: 104 PIHLAVQEGHTAVVSFLAA--ESDLHR-RDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 39.3 bits (93), Expect = 7e-04
 Identities = 10/39 (25%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPL 357
               L  AA       V  LL      P+     G T L
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL 40

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALHYA +  +  +VK L+    ++ +      GKTP+ +AA+    ++V  L+   A   
Sbjct: 282 ALHYAAQVSNMPIVKYLVGEKGSNKD-KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 340

Query: 348 VRTVDGVTPLDI 359
                  T   +
Sbjct: 341 AVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH---A 344
            L  AV    R +V  L++ GA D       + ++ LH AA      M+  +L+      
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGA-DPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 345 DPNVRTVDGVTPL 357
           D      +G+T L
Sbjct: 227 DIEELDRNGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 288 ALHYAVENCSREVVKALLELGA-------ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLL 340
            LH+   N S E  + L+   A       ADVN        TPL +A       +VA L+
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 341 DHHADPNVRTVDGVTPL 357
              ADP +      + L
Sbjct: 187 KAGADPTIYNKSERSAL 203

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 12/81 (14%)

Query: 288 ALHYAVENCSRE---VVKALLELGAADVNYPAGPA-------GKTPLHIAAEMVSPDMVA 337
           AL     N  R+     K L+E GA  V+Y            G+T LH AA++ +  +V 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGA-KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296

Query: 338 VLLDHH-ADPNVRTVDGVTPL 357
            L+    ++ + +  DG TP+
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 269 VELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP 323
           + +VK +V  +G N D+        +  A +    EVV  L++ GA  V         T 
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA-SVEAVDA-TDHTA 349

Query: 324 LHIAAEMVSPDMVAVLLDHHAD 345
             +A      ++V +      +
Sbjct: 350 RQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 14/83 (16%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVNYPAGPAGKTPLHIAAEMVSPDMVAV---LLDH 342
           ALH A  N    ++  +L       D+       G T L I A     D VA    L++ 
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQVASAKLLVEK 260

Query: 343 HADPNVRTV--------DGVTPL 357
            A  +             G T L
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTAL 283

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
           +  + LH      S  + + +      ++        +T LH  A   S +    L+ H 
Sbjct: 93  ESPIKLHTEAAG-SYAITEPITRESV-NII--DPRHNRTVLHWIASNSSAEKSEDLIVHE 148

Query: 344 --------ADPNVRTVDGVTPL 357
                   AD N    D  TPL
Sbjct: 149 AKECIAAGADVNAMDCDENTPL 170

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 6/70 (8%), Positives = 15/70 (21%), Gaps = 11/70 (15%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           +L  A  +   +  +  L+                P        +  +      +   P 
Sbjct: 40  SLLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNGNDFLGDFNHTNLQIPT 88

Query: 348 VRTVDGVTPL 357
               +    L
Sbjct: 89  EPEPESPIKL 98

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.6 bits (164), Expect = 3e-13
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DP 346
            +H A      + ++ LLE  A DVN      G  PLH+AA+     +V  L+ H A + 
Sbjct: 73  VIHDAARAGFLDTLQTLLEFQA-DVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130

Query: 347 NVRTVDGVTPLDI 359
             R   G T  D+
Sbjct: 131 GHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.3 bits (163), Expect = 4e-13
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           AL       + E+ + LL  GA + +      G   +H AA     D +  LL+  AD N
Sbjct: 41  ALQVMKLG-NPEIARRLLLRGA-NPDL-KDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97

Query: 348 VRTVDGVTPL 357
           +   +G  PL
Sbjct: 98  IEDNEGNLPL 107

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 7e-13
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      E + +LL+    +VN      G+T L +     +P++   LL   A+P+
Sbjct: 8   ELASAAARGDLEQLTSLLQNN-VNVNA-QNGFGRTALQVMKLG-NPEIARRLLLRGANPD 64

Query: 348 VRTVDGVTPL 357
           ++   G   +
Sbjct: 65  LKDRTGFAVI 74

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
            LH A +     VV+ L++  A++V +     G T   +A      ++V+++  + A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
               L  AA     + +  LL ++ + N +   G T L
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL 42

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.2 bits (164), Expect = 6e-13
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
             + A      E+ + +L   +           +T LH A      ++V  LL      N
Sbjct: 10  ICNLAYSGKLDELKERILADKS-LATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 348 VRTVDGVTPL 357
            +   G +PL
Sbjct: 68  DKDDAGWSPL 77

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH+A      E+V+ LL+LG   VN     AG +PLHIAA     ++V  LL   A  N
Sbjct: 43  ALHWACSAGHTEIVEFLLQLGV-PVN-DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

Query: 348 VRTVDGVTPL 357
               +G TPL
Sbjct: 101 AVNQNGCTPL 110

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 8/105 (7%)

Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNY 314
           +  A   +  E+  +++   G N D        A+H A    + ++V  LL   A   N 
Sbjct: 110 LHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA-STN- 166

Query: 315 PAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
                G TPLH+A +    +    L+   A   +   +  TPL +
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
           N +    LHYA      E+   LLE GA + +        T +H AA   +  MV +LL 
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGA-NPD-AKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 342 HHADPNVRTVDGVTPL 357
           + A  N++  +G TPL
Sbjct: 161 YKASTNIQDTEGNTPL 176

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 5/38 (13%), Positives = 11/38 (28%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
                ++A      ++   +L   +       D  T L
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTAL 44

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 260 MRRALDSSDVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNY 314
           M RA    ++++V +++     + +         LH A +    E  K L+  GA  +  
Sbjct: 143 MHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIY- 199

Query: 315 PAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
                 KTPL +A   +   ++   L    + ++
Sbjct: 200 IENKEEKTPLQVAKGGL--GLILKRLAEGEEASM 231

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           ALH A+   +  +V  L+  GA +VN      G TPLH AA      +   L+ H A   
Sbjct: 57  ALHNAICGANYSIVDFLITAGA-NVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114

Query: 348 VRTV-DGVTPLDI 359
             T+ DG T  + 
Sbjct: 115 ATTLSDGATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      EVV+  ++    D +      G T LH A    +  +V  L+   A+ N
Sbjct: 24  LLLDAALTGELEVVQQAVKEMN-DPSQ-PNEEGITALHNAICGANYSIVDFLITAGANVN 81

Query: 348 VRTVDGVTPL 357
                G TPL
Sbjct: 82  SPDSHGWTPL 91

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 3/72 (4%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVS--PDMVAVLLDHHAD 345
            LH A       +  AL++ GA  +       G T             D    L D    
Sbjct: 90  PLHCAASCNDTVICMALVQHGA-AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148

Query: 346 PNVRTVDGVTPL 357
             +     V  L
Sbjct: 149 MGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 301 VKALLELGAADVNYP--AGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           ++++L            A       L  AA     ++V   +    DP+    +G+T L
Sbjct: 1   MRSVLRKAG-SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL 58

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 6/74 (8%), Positives = 13/74 (17%), Gaps = 5/74 (6%)

Query: 288 ALHYA--VENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
           A            +    L ++    +           L   +     D ++        
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQ-SMGLMNS-GAVYALWDYSAE-FGDELSFREGESVT 180

Query: 346 PNVRTVDGVTPLDI 359
              R     T    
Sbjct: 181 VLRRDGPEETDWWW 194

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)

Query: 288 ALHYAVENCSREVVKALLELGAADVN-------------YPAGPAGKTPLHIAAEMVSPD 334
           ALH A+E   +  V+ L+E GA DV+                   G+ PL +AA    P 
Sbjct: 96  ALHIAIERRCKHYVELLVEKGA-DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154

Query: 335 MVAVLLDH---HADPNVRTVDGVTPL 357
           +V  L ++    AD   +   G T L
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVL 180

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 12/91 (13%)

Query: 288 ALHYAVENCSR---EVVKALLELGAADVNYPAG---------PAGKTPLHIAAEMVSPDM 335
            L  A+ N S    + +  LL++     N               G+T LHIA E      
Sbjct: 49  CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 336 VAVLLDHHADPNVRTVDGVTPLDILRTLTSD 366
           V +L++  AD + +                 
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYF 139

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 19/90 (21%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVNYPAGPAGKTPLHIAAEM---------VSPDMV 336
            L  A       +V  L E G   AD+       G T LH    +             M 
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMY 201

Query: 337 AVLLDHHADPN-------VRTVDGVTPLDI 359
            +LL   A          +   DG++PL +
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 20/90 (22%)

Query: 288 ALHYAVENCSRE----VVKALLELGA--ADVNYPAGPAGKTPLHIAAEMVSP---DMVAV 338
            L   V   S +    ++  LL       D  +     GKT L  A   +S    D + +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 339 LLDH-----------HADPNVRTVDGVTPL 357
           LLD            ++        G T L
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTAL 97

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 14/74 (18%)

Query: 288 ALHYAV--ENCSREVVKALLELGA------ADVNYPAGPA------GKTPLHIAAEMVSP 333
            LH  V   + +RE  K + ++        A +             G +PL +AA+    
Sbjct: 179 VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238

Query: 334 DMVAVLLDHHADPN 347
            +   ++       
Sbjct: 239 GIFQHIIRREIADA 252

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKT-PLHIAAEMVSPDMVAVLLDHHADP 346
            +   +   S +V + LL  GA + N  A PA  T P+H AA     D + VL    A  
Sbjct: 48  PIQVMMMG-SAQVAELLLLHGA-EPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

Query: 347 NVRTVDGVTPLDI 359
           +V    G  P+D+
Sbjct: 105 DVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      E V+ LLE G AD N      G+ P+ +   M S  +  +LL H A+PN
Sbjct: 15  GLATAAARGQVETVRQLLEAG-ADPNA-LNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71

Query: 348 VRTVDGVT-PL 357
                 +T P+
Sbjct: 72  CADPATLTRPV 82

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
            +H A      + +  L   GA  ++      G+ P+ +A E    D+   L     D
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGA-RLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.3 bits (124), Expect = 4e-08
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 308 GAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G+  ++   G +    L  AA     + V  LL+  ADPN     G  P+
Sbjct: 1   GSPGIHM-LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI 49

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      + V+ L+  GA DV       G TPLH+AA     ++V +LL+  AD  
Sbjct: 27  KLLEAARAGQDDEVRILMANGA-DVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84

Query: 348 VRTVDGVTPLDI 359
            +   G T  DI
Sbjct: 85  AQDKFGKTAFDI 96

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 292 AVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV 351
              +        L+  G+  +           L  AA     D V +L+ + AD   +  
Sbjct: 1   GSSHHHHHHSSGLVPRGS-HMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55

Query: 352 DGVTPL 357
           +G TPL
Sbjct: 56  NGSTPL 61

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVL 339
            LH A  N   EVVK LLE GA DV       GKT   I+ +  + D+  +L
Sbjct: 60  PLHLAARNGHLEVVKLLLEAGA-DVX-AQDKFGKTAFDISIDNGNEDLAEIL 109

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKT-PLHIAAEMVSPDMVAVLLDHHADP 346
            +   +   S  V + LL  GA + N  A PA  T P+H AA     D + VL    A  
Sbjct: 48  PIQVMMMG-SARVAELLLLHGA-EPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

Query: 347 NVRTVDGVTPLDI 359
           +VR   G  P+D+
Sbjct: 105 DVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 63.3 bits (155), Expect = 4e-12
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            +H A      + +  L   GA  ++      G+ P+ +A E+   D+   L        
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGA-RLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138

Query: 348 VRTVDGVTPLD 358
                 +   +
Sbjct: 139 GSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  A      E V+ALLE G A+ N P    G+ P+ +   M S  +  +LL H A+PN
Sbjct: 15  WLATAAARGRVEEVRALLEAG-ANPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEPN 71

Query: 348 VRTVDGVT-PL 357
                 +T P+
Sbjct: 72  CADPATLTRPV 82

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 305 LELGA-ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           +E  A + +           L  AA     + V  LL+  A+PN     G  P+
Sbjct: 1   MEPAAGSSME-----PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPI 49

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 31/142 (21%), Positives = 46/142 (32%), Gaps = 49/142 (34%)

Query: 16  NLLINGQAFSDVTFSV----EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           ++  N    +DV F V      R V AH+ +LA  S  F   F G               
Sbjct: 1   SMFNNEL-MADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---------- 49

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHC 131
                         I +  V    FL+LL+++YS ++ +                     
Sbjct: 50  -----------KSEIHIPDVEPAAFLILLKYMYSDEIDLEA------------------- 79

Query: 132 TSAVDLALDTLAAARYFGVEQL 153
               D  L TL AA+ + V  L
Sbjct: 80  ----DTVLATLYAAKKYIVPAL 97

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 65.3 bits (159), Expect = 7e-12
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 46/181 (25%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
            D L  L     F+D    V G+   AH+ ILAARS  F   F      S          
Sbjct: 162 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESK--------- 212

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHC 131
                         + +N V  EVF  ++ F+Y+G+   +                    
Sbjct: 213 -----------KNRVEINDVEPEVFKEMMCFIYTGKAPNL-------------------- 241

Query: 132 TSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTT 191
                +A D LAAA  + +E+L ++ +  L + +   S+E+  ++LI +      QL T 
Sbjct: 242 ---DKMADDLLAAADKYALERLKVMCEDALCSNL---SVENAAEILILADLHSADQLKTQ 295

Query: 192 C 192
            
Sbjct: 296 A 296

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 17/89 (19%)

Query: 288 ALHYAVENCSREVVKALLELGAADVN-------------YPAGPAGKTPLHIAAEMVSPD 334
           ALH A+E  +  +V  L+E GA DV               P    G+ PL +AA      
Sbjct: 104 ALHIAIERRNMTLVTLLVENGA-DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162

Query: 335 MVAVLLDH---HADPNVRTVDGVTPLDIL 360
           +V  LL +    AD + R   G T L  L
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHAL 191

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 288 ALHYAVENCSR---EVVKALLELGAADVNYPAGP---------AGKTPLHIAAEMVSPDM 335
            L  A+ N      + +  LL++     +               G+T LHIA E  +  +
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 336 VAVLLDHHADPNVRTVDGVTPL 357
           V +L+++ AD            
Sbjct: 117 VTLLVENGADVQAAANGDFFKK 138

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 19/88 (21%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVNYPAGPAGKTPLHIAAE---------MVSPDMV 336
            L  A       +VK LL+     AD++      G T LH   E              M 
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 337 AVLLDH-------HADPNVRTVDGVTPL 357
             +L              +    G+TPL
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPL 237

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 20/90 (22%)

Query: 288 ALHYAVENCSREVVKALLELGA------ADVNYPAGPAGKTPLHIAAEMVS---PDMVAV 338
           ++  AV   + + +++LL           D  +     GKT L  A   +     D +A+
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 339 LLDHHADPNV-----------RTVDGVTPL 357
           LLD     +                G T L
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 9/42 (21%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE 329
            L  A  +    V+  +L+                  H AA 
Sbjct: 236 PLALAASSGKIGVLAYILQREIH---------EPECRHAAAH 268

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVN------------YPAGPAGKTPLHIAAE 329
                 ALH A+E  S + VK L+E G ADV+                  G+ PL +AA 
Sbjct: 87  FYQGHSALHIAIEKRSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 330 MVSPDMVAVLLDHH---ADPNVRTVDGVTPL 357
               D+V  LL++    A        G T L
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.0 bits (135), Expect = 5e-09
 Identities = 17/87 (19%), Positives = 22/87 (25%), Gaps = 17/87 (19%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVN---------------YPAGPAGKTPLHIAAEM 330
            L  A      +VV  LLE     A +                        + L I    
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198

Query: 331 VSPDMVAVLLDHHADPNVRTVDGVTPL 357
               M A L        +    G+TPL
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPL 225

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 288 ALHYAVENCSR---EVVKALLELGAADVNYPAGPA---------GKTPLHIAAEMVSPDM 335
            L  AV N        +  LL++     N               G + LHIA E  S   
Sbjct: 46  CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC 105

Query: 336 VAVLLDHHADPNVRTVDGVTPLD 358
           V +L+++ AD ++R         
Sbjct: 106 VKLLVENGADVHLRACGRFFQKH 128

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
           N  E  AL   + +   ++   L               G TPL +AA+    ++   +L 
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQ-LEEIS-NHQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 342 HHADPN 347
                 
Sbjct: 243 REFSGA 248

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV 338
                      H + ++  +EV  A       ++N P    G TPLH    + + ++V  
Sbjct: 91  SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL-NLNIPVDEHGNTPLHWLTSIANLELVKH 149

Query: 339 LLDHHADPNVRTVDGVTPL 357
           L+ H ++       G + L
Sbjct: 150 LVKHGSNRLYGDNMGESCL 168

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.0 bits (137), Expect = 4e-09
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 15/167 (8%)

Query: 203 PEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAA--ADLEDQKIRRM 260
           P  + K LP  VV   E      +  +R L            + ++   ++      ++ 
Sbjct: 42  PLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 101

Query: 261 RRALDSSDVELVKLMVMGEGLNLDEAL------ALHYAVENCSREVVKALLELGAADVNY 314
             + DS   E+         LNL+  +       LH+     + E+VK L++ G+ +  Y
Sbjct: 102 HVSFDSLLQEVNDAFP-NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-NRLY 159

Query: 315 PAGPAGKTPLHIAAE----MVSPDMVAVLLDHHADPNVRTVDGVTPL 357
                G++ L  A +      S    A+L   +    +      T L
Sbjct: 160 GDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 281 LNLDEALALHYAVENCSREVVKALLELGA---ADVNYPAGPAGKTPLHIAAEMVSPDMVA 337
              +E  +         ++ +   L+L       +N      G T L+IAA + +  +V 
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARLGNISIVD 300

Query: 338 VLLDHHADPNVRTVDGVTPLDI 359
            LLD+ ADP +    G+ P+D 
Sbjct: 301 ALLDYGADPFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 194 HLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLE 253
           H++  SG+     A    ++++      +    +   +       +  +     +  +  
Sbjct: 207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 266

Query: 254 DQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVN 313
           D K   +   L++ D               +    L+ A    +  +V ALL+ GA D  
Sbjct: 267 DLKWI-IANMLNAQDS--------------NGDTCLNIAARLGNISIVDALLDYGA-DPF 310

Query: 314 YPAGPAGKTPLHIAAEM 330
                +G  P+   A +
Sbjct: 311 IANK-SGLRPVDFGAGL 326

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAG-PAGKTPLHIAAEMVSPDMVAVLLDHHADP 346
            +  A    + E    L E G  D             L    +     +   L++  AD 
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68

Query: 347 NVRTVDGVTPL 357
             RT +G T  
Sbjct: 69  KSRTKEGTTLF 79

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 8/76 (10%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE------MVSPDMVAVLLD 341
            L    +    ++   L+  GA D+       G T      +        + ++  + L+
Sbjct: 45  VLRNNNDEARYKISMFLINKGA-DIKS-RTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 342 HHADPNVRTVDGVTPL 357
             AD           +
Sbjct: 103 KGADITALYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 7/68 (10%)

Query: 288 ALHYAVENCSRE------VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
            +   + N   +      + K +       +       G T L        P  + ++ D
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKRCQKPIALKMMED 175

Query: 342 HHADPNVR 349
           +    N++
Sbjct: 176 YIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 15/85 (17%)

Query: 288 ALHYAVENCSR------EVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPD------M 335
                 +          E+ K  LE GA D+        K  +         D      +
Sbjct: 78  LFFPLFQGGGNDITGTTELCKIFLEKGA-DITALYK-PYKIVVFKNIFNYFVDENEMIPL 135

Query: 336 VAVLLDHH-ADPNVRTVDGVTPLDI 359
             ++         ++   G+T L+ 
Sbjct: 136 YKLIFSQSGLQLLIKDKWGLTALEF 160

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 21/99 (21%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN         DVT  VEG+   AHR +LAA S +F     G               
Sbjct: 17  LLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--------------- 61

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                  A     +     V  + F  L+QF Y+ ++ +
Sbjct: 62  ------QADGELNITLPEEVTVKGFEPLIQFAYTAKLIL 94

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 22/99 (22%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L+ LN         D T  +      AHR +LA+ S +F   +                 
Sbjct: 10  LERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS--------------- 54

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                   S     +  + V  + F  LL+F+Y+G +++
Sbjct: 55  -------TSENNVFLDQSQVKADGFQKLLEFIYTGTLNL 86

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN L +    +DV   V      AH+ +L A S  F   F      +          
Sbjct: 17  LLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSV------- 69

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                        +     +  E F +LL F+Y+ ++++
Sbjct: 70  -------------INLDPEINPEGFNILLDFMYTSRLNL 95

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 23/99 (23%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L+ LN       + DV+  V+G    AHR +LAA S +FR  F                 
Sbjct: 21  LECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN--------------- 65

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                   SR   V    +V  + F  +L F Y+G++S+
Sbjct: 66  --------SRSAVVELPAAVQPQSFQQILSFCYTGRLSM 96

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN         DVT  VEG+   AHR +LAA S +F     G               
Sbjct: 24  LLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG--------------- 68

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                        V     V  + F  L+QF Y+ ++ +
Sbjct: 69  ------QTDAELTVTLPEEVTVKGFEPLIQFAYTAKLIL 101

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 25/99 (25%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L+ LN         D TF V+G    AH+ +LAA S +F+  F                 
Sbjct: 15  LEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD--------------- 59

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                        V+ ++         +L+F+Y+ ++S+
Sbjct: 60  ----------QKDVVHLDISNAAGLGQVLEFMYTAKLSL 88

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 24/99 (24%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN       + D T  V G +  AH  +LA  S FF+  +      S          
Sbjct: 12  LQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS---------- 61

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                         + + +   E+F LLL F Y+G +++
Sbjct: 62  --------------VVLPAGFAEIFGLLLDFFYTGHLAL 86

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 20/99 (20%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN         DV   VEGR    HR +LAA S +F+K F         +       
Sbjct: 13  LSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQN------- 65

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                        V  ++ V  E    L+ F Y+  +++
Sbjct: 66  -------------VYEIDFVSAEALTALMDFAYTATLTV 91

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 25/102 (24%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L+ LN       F DVT  VE R   AH+ IL+A S +F + F                 
Sbjct: 19  LNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQ------------ 66

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQ 113
                        V+ ++ +  E+F  +L ++YS ++  V  
Sbjct: 67  -------------VVELSFIRAEIFAEILNYIYSSKIVRVRS 95

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 18/99 (18%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  L+       F D    ++G  +   + ILAA S + R                    
Sbjct: 35  LRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY--------------- 79

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
              PP      T  I +  +   V   +L +++SGQ+ +
Sbjct: 80  --NPPKDDGS-TYKIELEGISVMVMREILDYIFSGQIRL 115

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 24/99 (24%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN       + D T  V G +  AH  +LA  S FF++ +      S          
Sbjct: 13  LQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGS---------- 62

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                         + + +   E+F LLL F Y+G +++
Sbjct: 63  --------------VVLPAGFAEIFGLLLDFFYTGHLAL 87

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 284 DEALALHYAVENCSRE--VVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD 341
            E L LH AV+  ++    +   +      ++  A   G T LH AA    PD + +LL 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQPDCLKLLLK 247

Query: 342 HHADPNVRTVDGVTPLDILRTL 363
             A        G T LDI R  
Sbjct: 248 GRALVGTVNEAGETALDIARKK 269

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 21/99 (21%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN         DVT  VE +   AHR +LAA S +F +   G               
Sbjct: 20  LLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVG--------------- 64

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                   +     +P   V    F  LLQF Y+ ++ +
Sbjct: 65  -----QTKNDLVVSLP-EEVTARGFGPLLQFAYTAKLLL 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 9e-09
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 49/183 (26%)

Query: 236 HHHHHHHDLSA----------------AAAADLEDQKIR-RMRRALDSSDVELVKLMVMG 278
           HHHHHH D                   A   + + + ++   +  L   +++     ++ 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID----HIIM 56

Query: 279 EGLNLDEALALHYAVENCSREVVKALLELGAADVNYP--AGPAGKTPLHIAAEMVSPDMV 336
               +   L L + + +   E+V+  +E     +NY     P       I  E   P M+
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSP-------IKTEQRQPSMM 108

Query: 337 AVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEP-NKLRLCLELVQSAA 395
             +     D            ++ R                 ++P  KLR  L  ++ A 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR-----------------LQPYLKLRQALLELRPAK 151

Query: 396 LVL 398
            VL
Sbjct: 152 NVL 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 81/508 (15%), Positives = 144/508 (28%), Gaps = 164/508 (32%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGP--- 57
           + L ++L  L     N+LI+G   S       G+   A   +    S   +         
Sbjct: 138 LKLRQALLELR-PAKNVLIDGVLGS-------GKTWVA---LDVCLSYKVQCKMDFKIFW 186

Query: 58  -------DPPSGLDPATA--SRINQGPPSPASRPTGV-IPVNSVGYEVFLLLLQFLYSGQ 107
                   P + L+       +I+    S +   + + + ++S+  E+  LL        
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------- 238

Query: 108 VSIVPQKHEPRPNC----GERGCWHTHCTSAVDLALDTLAAARYFGV------------- 150
                 K +P  NC          +    +A +L+   L   R+  V             
Sbjct: 239 ------KSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 151 --EQLALLTQKQLANMVEKA---SIED----VMKV------LIASRKQDMHQLWTTCSHL 195
                  LT  ++ +++ K      +D    V+        +IA   +D    W    H+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 196 -------VAKSGL----PPE---------VLAKHLPI--------------EVVAKIEDL 221
                  + +S L    P E         V      I                V  + + 
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 222 RHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRM------RRALDSSDVELVKLM 275
            HK SL  +             L      + E    R +       +  DS D+      
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP---- 466

Query: 276 VMGEGLNLDEALALH--YAVENCSREVVKALLELGAADVNY------PAGPAGKTPLHIA 327
                  LD+    H  + ++N        L  +   D  +          A      I 
Sbjct: 467 -----PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 328 AEMVSPDMVAVL-------LDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIE 380
                 + +  L        D+      R V+      IL     DFL K        IE
Sbjct: 522 ------NTLQQLKFYKPYICDNDPKYE-RLVN-----AIL-----DFLPK--------IE 556

Query: 381 PNKLRL-CLELVQSAALVLSREEGILNE 407
            N +     +L++ A  +++ +E I  E
Sbjct: 557 ENLICSKYTDLLRIA--LMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 64/551 (11%), Positives = 141/551 (25%), Gaps = 169/551 (30%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHR---CILAARSLFFRKFFCGPDPPSGLDPA-- 66
            D    +++ +    +    +  +    R    +L+ +    +KF         L     
Sbjct: 39  QDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFV-----EEVLRINYK 92

Query: 67  -TASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERG 125
              S I      P           S+   +++     LY+    +  + +  R       
Sbjct: 93  FLMSPIKTEQRQP-----------SMMTRMYIEQRDRLYND-NQVFAKYNVSRL------ 134

Query: 126 CWHTHCTSAVDLALDTLAAARY--------FGVEQLALLTQKQ-LANMVEKA-SIEDVM- 174
                    +  AL  L  A+          G         K  +A  V  +  ++  M 
Sbjct: 135 ----QPYLKLRQALLELRPAKNVLIDGVLGSG---------KTWVALDVCLSYKVQCKMD 181

Query: 175 -KVL---IASRKQD---MHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRH--KS 225
            K+    + +       +  L      +        +  + ++ + + +   +LR   KS
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKS 240

Query: 226 SLARRSLISHHHHHHHHDLSAAAAADLEDQKI----------------RRMRRALDSSDV 269
                 L+          L      ++++ K                 +++   L ++  
Sbjct: 241 KPYENCLL---------VLL-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 270 ELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE 329
             + L      L  DE  +L     +C     + L        N         P  ++  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPRE-VLTTN---------PRRLS-- 331

Query: 330 MVSPDMVAVLLDHHAD--PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLC 387
                ++A  +        N + V+     D L T+            L  +EP + R  
Sbjct: 332 -----IIAESIRDGLATWDNWKHVN----CDKLTTIIESS--------LNVLEPAEYRKM 374

Query: 388 LELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLD 447
            +      L +       + P +   ++I+   +      V N     S       +   
Sbjct: 375 FD-----RLSVFPPS--AHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSL------VEKQ 420

Query: 448 SSRLVYLNLGAGTGNSAHHHHHQMGSSRMDGDDDSSHQSQREAVNRH------------- 494
                                  +       ++ + H+S  +  N               
Sbjct: 421 PKESTI-----------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 495 DPSIYHH---H 502
           D   Y H   H
Sbjct: 470 DQYFYSHIGHH 480

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 25/99 (25%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L   N +       DV   V+ +  HAHR +LA  S  F   F                 
Sbjct: 16  LCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-------------- 61

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
                      +    ++ +  + F  +L++ Y+  +  
Sbjct: 62  -----------SQHYTLDFLSPKTFQQILEYAYTATLQA 89

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
           ALH AV +  R  +  +  L     +++      G T LH      + + + +LL   A 
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 346 PNVRTVDGVTPLDI 359
             +    G TPLDI
Sbjct: 231 IEIANESGETPLDI 244

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 18/99 (18%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  L+       F D    ++G  +   + ILAA S + R                    
Sbjct: 19  LRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNY--------------- 63

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
              PP      T  I +  +   V   +L +++SGQ+ +
Sbjct: 64  --NPPKDDGS-TYKIELEGISVMVMREILDYIFSGQIRL 99

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 17/102 (16%)

Query: 12  LDYLNLLINGQAFSDVT---FSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATA 68
               N       F D+T       GR   AHR +LAA + +F               + +
Sbjct: 20  SWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLS-----GQFSESRS 74

Query: 69  SRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
            R+                      +    +++++Y+G++ +
Sbjct: 75  GRVEM---------RKWSSEPGPEPDTVEAVIEYMYTGRIRV 107

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 17/120 (14%)

Query: 258 RRMRRALDSSDVELVKLMVMGEGLNLDEAL-----------ALHYAVENCSR---EVVKA 303
           +R+  A+ + D+  V L     G +  + L            LH AV+  ++    +V  
Sbjct: 134 QRLWTAICNRDLLSV-LEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF 192

Query: 304 LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL 363
           +++ G   ++  A   G T LH AA    PD + +LL   A        G T LDI R  
Sbjct: 193 IIQNGG-HLDAKA-ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 35/168 (20%), Positives = 47/168 (27%), Gaps = 8/168 (4%)

Query: 199 SGLPPEVLAKHLPIEVVAKIEDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIR 258
            G             V  K        SL  +           H  +    A      + 
Sbjct: 155 RGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLP 214

Query: 259 RMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGP 318
            M  AL           V       D A  L  A    S    + LL+ GA +VN     
Sbjct: 215 TMADALAHGAD------VNWVNGGQDNATPLIQATAANSLLACEFLLQNGA-NVNQADSA 267

Query: 319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSD 366
            G+ PLH A  +    +  + L   AD   R  +G  PL I     + 
Sbjct: 268 -GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 19/110 (17%), Positives = 28/110 (25%), Gaps = 30/110 (27%)

Query: 1   MTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPP 60
           + L     S  L  L   +      D   +V  +   AH  +LA  S    +        
Sbjct: 8   IRLPSPYGSDRLVQLAARLRPA-LCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW-ALG 65

Query: 61  SGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSI 110
            G+ P                              F  LL F+Y   V +
Sbjct: 66  EGISP----------------------------STFAQLLNFVYGESVEL 87

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
            L  A+   ++     LL + +               +I       D+ AV L+HH 
Sbjct: 322 LLRLALRLGNQGACALLLSIPSVLAL-----TKANNYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 9/97 (9%), Positives = 23/97 (23%), Gaps = 7/97 (7%)

Query: 268 DVELVKLMVMGEGLNLDEALALHYAVENCSR---EVVKALLELGAADVNYPAGPAGKTPL 324
           +    +L        +   +    A         + +  LL      V            
Sbjct: 75  NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKV-IQAENYQAF 132

Query: 325 HIAAEMVSPDMVAVLLDHHADPNVRTV--DGVTPLDI 359
            +AAE     ++  L +      +  +  +      +
Sbjct: 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	506
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.92
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.91
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.91
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.9
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.9
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.89
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.89
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.89
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.89
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.87
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.31
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.12
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	98.81
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.68
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.03
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.02
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.0
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	97.87
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.07
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	96.78
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	93.74
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	91.74
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	89.51
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	87.69
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	82.2
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	81.61

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=3.8e-31  Score=253.11  Aligned_cols=180  Identities=17%  Similarity=0.155  Sum_probs=157.4

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..|..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|++.|+.+++.++ ..|+||||
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~  129 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLI  129 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC-TTCCCHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCCcHHH
Confidence            35788999999999999999999999 667655     489999999999999999999999876899998 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCC
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGIL  405 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~  405 (506)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+     
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~~-----  186 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA------------------VNNVDAAVVLLKNGANKDMQ-----  186 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHH------------------HTCHHHHHHHHHTTCCTTCC-----
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCCCCc-----
Confidence            9999999999999999999999999999999999998                  68899999999999999987     


Q ss_pred             CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          406 NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                            +..|.||||+|+...           ...++++++  +.++++|.+|..|+||||+|++.|..
T Consensus       187 ------~~~g~tpL~~A~~~~-----------~~~~v~~Ll--~~ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          187 ------NNREETPLFLAAREG-----------SYETAKVLL--DHFANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             ------CTTSCCHHHHHHHHT-----------CHHHHHHHH--HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ------CCCCCCHHHHHHHCC-----------CHHHHHHHH--HcCCCccccccCCCCHHHHHHHcCCH
Confidence                  556779999985322           223344455  34578999999999999999999954

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=9.1e-31  Score=246.81  Aligned_cols=180  Identities=20%  Similarity=0.175  Sum_probs=152.4

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..+..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.++|++|++.|+ ++|.+| ..|+||||
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~n~~d-~~g~tpLh   92 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAV-KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA-NVNSPD-SHGWTPLH   92 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHH-HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCCHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCC-CCCCCHHH
Confidence            45678899999999999999999999 555544     58999999999999999999999999 999999 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccccc
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRT-VDGVTPLDIL--RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREE  402 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  402 (506)
                      +|+..|+.+++++|+++|++++.++ ..|+||||+|  +.                  .++.+++++|++.|++++.+| 
T Consensus        93 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~------------------~~~~~~v~~Ll~~ga~~~~~~-  153 (229)
T 2vge_A           93 CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR------------------EGYADCATYLADVEQSMGLMN-  153 (229)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTS------------------TTHHHHHHHHHHHHHHTTTSG-
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHh------------------cChHHHHHHHHHcCCCccccc-
Confidence            9999999999999999999999997 6999999999  54                  789999999999999999984 


Q ss_pred             CCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCCCC
Q 010590          403 GILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSRM  476 (506)
Q Consensus       403 ~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~~~  476 (506)
                                ..+.||++.++...              ...+++......++|.+|..|+||||+|++.|....
T Consensus       154 ----------~~~~~~l~~~~~~~--------------~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          154 ----------SGAVYALWDYSAEF--------------GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             ----------GGEEEESSCBCCSS--------------TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred             ----------CCchHHHHHHhhcc--------------ccccCccccccccccccCCCcccHHHHHHHcCCcce
Confidence                      45667887652211              112223223335699999999999999999996443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.3e-29  Score=227.10  Aligned_cols=122  Identities=34%  Similarity=0.457  Sum_probs=112.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCC
Q 010590          258 RRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVS  332 (506)
Q Consensus       258 t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~  332 (506)
                      ++|+.||..|+.++|+.|| +.|+|+     +|+||||+|+..++.+++++|++.|+ +++.+| ..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll-~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-d~~~~d-~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNAKD-SDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-chhhhc-cCCCCHHHHHHHcCC
Confidence            5799999999999999999 677766     48999999999999999999999999 999998 899999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          333 PDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       333 ~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      .+++++|+++|+|+|.+|.+|+||||+|+.                  .++.+++++|++.|++++.+
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~------------------~g~~~~v~~Ll~~gad~~~~  132 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAE------------------NGHKEVVKLLISKGADVNTS  132 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCcccc
Confidence            999999999999999999999999999998                  78999999999988877654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=5e-31  Score=254.80  Aligned_cols=107  Identities=23%  Similarity=0.337  Sum_probs=42.0

Q ss_pred             CccccHHHHHHHhcCCH-HHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          253 EDQKIRRMRRALDSSDV-ELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      +..|.||||+|+..+.. .++++|+ +.|+|+     +|+||||+|+..|+.++|++|++.|+ +++.++ ..|.||||+
T Consensus        49 ~~~~~t~L~~a~~~~~~~~~v~~Ll-~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a-~~~~~~-~~g~t~l~~  125 (269)
T 4b93_B           49 DPEFCHPLCQCPKCAPAQKRLAKVP-ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGA-NAGARN-ADQAVPLHL  125 (269)
T ss_dssp             ---------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTC-CTTCCC-TTCCCHHHH
T ss_pred             CccCCCHHHHHHHhCCHHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCC-CcCccC-CCCCCcccc
Confidence            34445555555544443 2444444 344333     24555555555555555555555555 555554 455555555


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      |+..++.+++++|+++|+++|.+|..|+||||+|+.
T Consensus       126 a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B          126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             ccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            555555555555555555555555555555555554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=7.8e-31  Score=254.11  Aligned_cols=177  Identities=19%  Similarity=0.103  Sum_probs=114.3

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCC--------------
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAAD--------------  311 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~--------------  311 (506)
                      ..+..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +              
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~  117 (282)
T 1oy3_D           40 LQNDLGQTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP-SHPRDASDTYLTQSQ  117 (282)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC-SSCCCC---------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCC-CCchhhHHHHhhccc
Confidence            44566777777777777777777777 455544     36677777777777777777777664 3              


Q ss_pred             ---------------------------------CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC-CCcHH
Q 010590          312 ---------------------------------VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVD-GVTPL  357 (506)
Q Consensus       312 ---------------------------------v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~-g~tpL  357 (506)
                                                       ++.++ ..|+||||+|+..|+.+++++|+++|++++.++.. |+|||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL  196 (282)
T 1oy3_D          118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL  196 (282)
T ss_dssp             --------------------------CCCGGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             ccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC-CCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH
Confidence                                             55555 66777777777777777777777777777776643 77777


Q ss_pred             HHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCc
Q 010590          358 DILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSA  437 (506)
Q Consensus       358 h~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~  437 (506)
                      |+|+.                  .++.+++++|+++|++++.+           +..|.||||+|+..           +
T Consensus       197 ~~A~~------------------~~~~~~v~~Ll~~gad~~~~-----------d~~g~tpL~~A~~~-----------~  236 (282)
T 1oy3_D          197 HLAVE------------------AQAASVLELLLKAGADPTAR-----------MYGGRTPLGSALLR-----------P  236 (282)
T ss_dssp             HHHHH------------------TTCHHHHHHHHHTTCCTTCC-----------CTTSCCHHHHHHTS-----------S
T ss_pred             HHHHH------------------cCCHHHHHHHHHcCCCCccc-----------ccCCCCHHHHHHHc-----------C
Confidence            77776                  67889999999999998887           45677999998432           2


Q ss_pred             cccccccccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          438 TINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       438 ~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      ...++++++  ..++++|.+|.+|+|||++|....
T Consensus       237 ~~~~v~~Ll--~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          237 NPILARLLR--AHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CHHHHHHHH--HTTCCCCCCC--------------
T ss_pred             CcHHHHHHH--HcCCCcCcCCCcccccccccCCcc
Confidence            233445555  355889999999999999998766

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=1.3e-30  Score=246.23  Aligned_cols=178  Identities=21%  Similarity=0.219  Sum_probs=121.6

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+..|.||||+|+..|+.+++++|+ +.|+++     .|.||||+|+..|+.+++++|++.|..+++..+ ..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~  117 (237)
T 3b7b_A           40 CSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-DGGWTPMIW  117 (237)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCC-TTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCCCHHHH
Confidence            3455666666666666666666666 444433     356666666666666666666666622666665 566666666


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+.                  .++.+++++|++.|++++.+      
T Consensus       118 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~~~~Ll~~g~~~~~~------  173 (237)
T 3b7b_A          118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF------------------SGCVDIAEILLAAKCDLHAV------  173 (237)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------HCCHHHHHHHHTTTCCTTCC------
T ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH------------------CCCHHHHHHHHHcCCCCCCc------
Confidence            666666666666666666666666666666666665                  57788899999999888877      


Q ss_pred             CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          407 EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                           +..|.||||+|+..           +....+.+++  ..+.++|.+|.+|+||||+|+..|.
T Consensus       174 -----~~~g~t~L~~A~~~-----------~~~~~v~~Ll--~~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          174 -----NIHGDSPLHIAARE-----------NRYDCVVLFL--SRDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             -----CTTCCCHHHHHHHT-----------TCHHHHHHHH--TTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             -----CCCCCCHHHHHHHh-----------CCHhHHHHHH--HcCCCCCccCCCCCCHHHHHHHHHH
Confidence                 55677999998432           2233344455  3458899999999999999999884

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.8e-30  Score=243.77  Aligned_cols=178  Identities=16%  Similarity=0.102  Sum_probs=154.4

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCC--C------CCCChHHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEG--L------NLDEALALHYAVENCSREVVKALLELG--AADVNYPAGPAG  320 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~~~v~~~~~~~g  320 (506)
                      ..|..|.||||+|+..|+.+++++|+ +.|  +      +..|+||||+|+..|+.+++++|+++|  + +++.++ ..|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~-~~g  107 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLL-SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKIT-NQG  107 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-HTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCC-CTTCCC-TTC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHH-hccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-ccccCC-cCC
Confidence            35889999999999999999999999 555  3      336899999999999999999999999  7 899998 899


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc-cCccc
Q 010590          321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA-ALVLS  399 (506)
Q Consensus       321 ~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g-a~~~~  399 (506)
                      +||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.| ++++.
T Consensus       108 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~~~~~~  169 (228)
T 2dzn_A          108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS------------------VGSLKLIELLCGLGKSAVNW  169 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH------------------TTCHHHHHHHHTTTCCCSCC
T ss_pred             CCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHH------------------cCCHHHHHHHHhcCcccccC
Confidence            999999999999999999999999999999999999999998                  78999999999999 88888


Q ss_pred             cccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          400 REEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       400 ~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      +           +..|.||||+|+...           ....+.+++. ..++++|.+|.+|+||||+|++.+
T Consensus       170 ~-----------d~~g~t~L~~A~~~~-----------~~~~v~~Ll~-~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          170 Q-----------DKQGWTPLFHALAEG-----------HGDAAVLLVE-KYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             C-----------CTTSCCHHHHHHHTT-----------CHHHHHHHHH-HHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             c-----------CCCCCCHHHHHHHcC-----------CHHHHHHHHH-hcCCCCCccCCCCCcHHHHHHHHH
Confidence            7           556779999985322           2233444442 344889999999999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=8.2e-31  Score=253.97  Aligned_cols=180  Identities=18%  Similarity=0.125  Sum_probs=156.1

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCC--------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGL--------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      ...|..|.||||+|+..|+.++|++|+ +.|.        |..|+||||+|+..|+.++|++|+++|+ +++.++ ..|+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~-~~g~   79 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLL-GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVAE-RGGH   79 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHH-HHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCCC-TTSC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCC-CCCC
Confidence            346899999999999999999999999 3333        3359999999999999999999999999 999998 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCC-----------------------------------------------CCCCCCCCC
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHHAD-----------------------------------------------PNVRTVDGV  354 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g~  354 (506)
                      ||||+|+..|+.+++++|+++|++                                               ++.+|..|+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  159 (282)
T 1oy3_D           80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (282)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence            999999999999999999998865                                               788899999


Q ss_pred             cHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCC
Q 010590          355 TPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSS  434 (506)
Q Consensus       355 tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~  434 (506)
                      ||||+|+.                  .++.+++++|++.|++++.++.          ..|.||||+|+..         
T Consensus       160 t~L~~A~~------------------~g~~~~v~~Ll~~g~~~~~~~~----------~~g~tpL~~A~~~---------  202 (282)
T 1oy3_D          160 TPLHVAVI------------------HKDAEMVRLLRDAGADLNKPEP----------TCGRTPLHLAVEA---------  202 (282)
T ss_dssp             CHHHHHHH------------------TTCHHHHHHHHHHTCCTTCCCT----------TTCCCHHHHHHHT---------
T ss_pred             CHHHHHHH------------------cCCHHHHHHHHHcCCCCCCCCC----------CCCcCHHHHHHHc---------
Confidence            99999998                  7899999999999999998732          3488999998532         


Q ss_pred             CCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          435 GSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                        +...++++++  ..++++|.+|..|+||||+|+..|.
T Consensus       203 --~~~~~v~~Ll--~~gad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          203 --QAASVLELLL--KAGADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             --TCHHHHHHHH--HTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             --CCHHHHHHHH--HcCCCCcccccCCCCHHHHHHHcCC
Confidence              2233445555  3458999999999999999999984

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=3.6e-30  Score=242.57  Aligned_cols=178  Identities=19%  Similarity=0.106  Sum_probs=148.1

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCC-----CCCCCCCCChHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADV-----NYPAGPAGKTPL  324 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v-----~~~~~~~g~tpL  324 (506)
                      .|.||||+|+..|+.++++.|++..|+++     +|+||||+|+..|+.+++++|++.|+ ++     +.+| ..|+|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~-~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP-ELVFEPMTSEL-YEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG-GGGGCCCCSTT-TTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCc-hhccccccccC-CCCcCHH
Confidence            58999999999999999999994446654     58999999999999999999999999 76     6666 7999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHH
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTV-------------DGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELV  391 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~-------------~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll  391 (506)
                      |+|+..|+.+++++|+++|++++.++.             .|+||||+|+.                  .++.+++++|+
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll  141 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC------------------VGSEEIVRLLI  141 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH------------------HTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH------------------cCCHHHHHHHH
Confidence            999999999999999999999999876             79999999998                  68899999999


Q ss_pred             HhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccc--ccccccCCCcceee------ccCCCCCCC
Q 010590          392 QSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATIN--NNSLNLDSSRLVYL------NLGAGTGNS  463 (506)
Q Consensus       392 ~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l------n~~D~~G~T  463 (506)
                      ++|++++.+           +..|.||||+|+....         .++.  +.++++.  .+.+.      |.+|..|+|
T Consensus       142 ~~ga~~~~~-----------d~~g~t~L~~A~~~~~---------~~~~~~i~~~Ll~--~g~~~~~~~~~~~~~~~g~t  199 (232)
T 2rfa_A          142 EHGADIRAQ-----------DSLGNTVLHILILQPN---------KTFACQMYNLLLS--YDGGDHLKSLELVPNNQGLT  199 (232)
T ss_dssp             HTTCCTTCC-----------CTTSCCHHHHHHTCSC---------HHHHHHHHHHHHH--TTCSCSSCCGGGCCCTTSCC
T ss_pred             HCCCCCCCC-----------CCCCCCHHHHHHHcCC---------hHHHHHHHHHHHh--cCCchhhhhhhccCCCCCCC
Confidence            999999988           5567799999854322         1111  1122221  11233      799999999


Q ss_pred             cchhhhhcCCC
Q 010590          464 AHHHHHQMGSS  474 (506)
Q Consensus       464 ~LH~Aa~~gs~  474 (506)
                      |||+|+..|+.
T Consensus       200 pl~~A~~~g~~  210 (232)
T 2rfa_A          200 PFKLAGVEGNI  210 (232)
T ss_dssp             HHHHHHHHTCH
T ss_pred             HHHHHHHcCCH
Confidence            99999999853

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=3.3e-30  Score=242.58  Aligned_cols=179  Identities=20%  Similarity=0.239  Sum_probs=156.0

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...+..|.||||+|+..|+.+++++|+ +.|+++     .|+||||+|+..|+.+++++|+++|+ +++.++ ..|+|||
T Consensus        34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L  110 (231)
T 3aji_A           34 TRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVN-QNGCTPL  110 (231)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             hcCCCCCCCHHHHHHHcCcHHHHHHHH-HhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCC-CCCCCC-CCCCCHH
Confidence            345788999999999999999999999 666654     58999999999999999999999999 999998 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+    
T Consensus       111 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~~~~~~----  168 (231)
T 3aji_A          111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA------------------KGNLKMVHILLFYKASTNIQ----  168 (231)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------HTCHHHHHHHHHTTCCSCCC----
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH------------------cCCHHHHHHHHhcCCCcccc----
Confidence            99999999999999999999999999999999999997                  68899999999999999987    


Q ss_pred             CCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          405 LNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       405 ~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                             +..|.||||+|+...           ....+++++  ..+.++|.+|..|+||||+|+..|.
T Consensus       169 -------~~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          169 -------DTEGNTPLHLACDEE-----------RVEEAKFLV--TQGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             -------CTTSCCHHHHHHHTT-----------CHHHHHHHH--HTTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             -------CCCCCCHHHHHHHCC-----------CHHHHHHHH--HCCCCCCCCCCCCCCHHHHHHhhHH
Confidence                   456779999985322           233445555  3458899999999999999988763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=1.1e-29  Score=237.69  Aligned_cols=180  Identities=17%  Similarity=0.155  Sum_probs=157.6

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..|..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|++.++.+++.++ ..|+||||
T Consensus        20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~   97 (223)
T 2f8y_A           20 QTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLI   97 (223)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-TTCCCHHH
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCcHHH
Confidence            34788999999999999999999999 666654     589999999999999999999999876899998 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCC
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGIL  405 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~  405 (506)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+     
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~~~~~~-----  154 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA------------------VNNVDAAVVLLKNGANKDMQ-----  154 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC-----
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHH------------------cCCHHHHHHHHHcCCCCCCc-----
Confidence            9999999999999999999999999999999999998                  78999999999999999987     


Q ss_pred             CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          406 NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                            +..|.||||+|+...           ...++++++  +.+.++|.+|..|+||||+|+..|..
T Consensus       155 ------~~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~ga~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          155 ------NNREETPLFLAAREG-----------SYETAKVLL--DHFANRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             ------CTTCCCHHHHHHHHT-----------CHHHHHHHH--HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ------CCCCcCHHHHHHHcC-----------CHHHHHHHH--HcCCCCccccccCCCHHHHHHHhcch
Confidence                  456779999985322           223344444  34578999999999999999999853

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=1.1e-29  Score=240.34  Aligned_cols=196  Identities=21%  Similarity=0.172  Sum_probs=120.5

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHh---cCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVM---GEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      .|..|.||||+||..|+.+++++|++   ..+.++     +|.||||+|+..|+.+++++|++.|+ +++.++ ..|+||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~   82 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-SPMALD-RHGQTA   82 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-CccccC-CCCCCH
Confidence            35556666666666666666666552   133322     35566666666666666666666666 666555 566666


Q ss_pred             HHHHHHhCCHHHHHHHHHCCC----CCCCCCCCCCcHHHHHHH-----HHHHHHHcCCCCCCcc-----------cCCCh
Q 010590          324 LHIAAEMVSPDMVAVLLDHHA----DPNVRTVDGVTPLDILRT-----LTSDFLFKGAVPGLTH-----------IEPNK  383 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~~~~~~~-----------~~~~~  383 (506)
                      ||+|+..|+.+++++|+++|+    +++.+|..|+||||+|+.     ....++..|++++...           +..++
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            666666666666666666554    555556666666666652     2333344444443322           11577


Q ss_pred             HHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCC
Q 010590          384 LRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNS  463 (506)
Q Consensus       384 ~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T  463 (506)
                      .+++++|++.|++++.+           +..|.||||+|+...           ....+++++  ..+.++|.+|..|+|
T Consensus       163 ~~~v~~Ll~~g~~~~~~-----------~~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~ga~~~~~~~~g~t  218 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQ-----------MYSGSSALHSASGRG-----------LLPLVRTLV--RSGADSSLKNCHNDT  218 (241)
T ss_dssp             HHHHHHHHHTTCCTTCB-----------CTTSCBHHHHHHHHT-----------CHHHHHHHH--HTTCCTTCCCTTSCC
T ss_pred             HHHHHHHHHcCCCCCCc-----------CCCCCCHHHHHHHcC-----------CHHHHHHHH--hcCCCCCCcCCCCCC
Confidence            88999999999998877           456779999984322           223344444  345789999999999


Q ss_pred             cchhhhhcCC
Q 010590          464 AHHHHHQMGS  473 (506)
Q Consensus       464 ~LH~Aa~~gs  473 (506)
                      |||+|+..|.
T Consensus       219 pl~~A~~~~~  228 (241)
T 1k1a_A          219 PLMVARSRRV  228 (241)
T ss_dssp             TTTTCSSHHH
T ss_pred             HHHHHHhcCc
Confidence            9999998874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=247.69  Aligned_cols=173  Identities=17%  Similarity=0.115  Sum_probs=103.5

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .|..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|++.|+ +++..+  .|+||||+
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~--~g~t~L~~  163 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQPES--DLASPIHE  163 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHH-HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSSCSC--TTSCHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC-CCCCCC--CCCCHHHH
Confidence            3444555555555555555555555 333322     24455555555555555555555555 444332  35555555


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.       
T Consensus       164 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~-------  218 (285)
T 3d9h_A          164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE------------------NQQRACVKKLLESGADVNQ-------  218 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHH------------------TTCHHHHHHHHHTTCCTTC-------
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH------------------cCcHHHHHHHHHCCCCCCC-------
Confidence            555555555555555555555555555555555554                  6788899999999988872       


Q ss_pred             CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhc
Q 010590          407 EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQM  471 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~  471 (506)
                           +..|.||||+|+...           ...++++++  ..++++|.+|.+|+||||+|+..
T Consensus       219 -----~~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          219 -----GKGQDSPLHAVVRTA-----------SEELACLLM--DFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             -----CBTTBCHHHHHHHTT-----------CHHHHHHHH--HTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             -----CCCCCCHHHHHHHcC-----------CHHHHHHHH--HCCCCCCCcCCCCCCHHHHhcCc
Confidence                 456789999984322           233444555  34588999999999999999944

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=2.5e-30  Score=247.45  Aligned_cols=178  Identities=20%  Similarity=0.198  Sum_probs=129.8

Q ss_pred             cCCccccHHHHHHHhcC-------------CHHHHHHHHhcCCC------CCCChHHHHHHHHcCCHHHHHHHHHcCCCC
Q 010590          251 DLEDQKIRRMRRALDSS-------------DVELVKLMVMGEGL------NLDEALALHYAVENCSREVVKALLELGAAD  311 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~  311 (506)
                      ..|..|.||||+|+..|             +.+++++|+ +.|+      |.+|+||||+|+..|+.++|++|+++|+ +
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll-~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~   82 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-D   82 (253)
T ss_dssp             ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHH-HccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-C
Confidence            45889999999999987             899999999 5554      3468999999999999999999999999 9


Q ss_pred             CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHH
Q 010590          312 VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA-DPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLEL  390 (506)
Q Consensus       312 v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  390 (506)
                      ++.++ ..|+||||+|+..|+.+++++|+++|+ +++.+|..|+||||+|+.                  .++.+++++|
T Consensus        83 ~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~L  143 (253)
T 1yyh_A           83 ANIQD-NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR------------------LAVEGMLEDL  143 (253)
T ss_dssp             TTCCC-TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH------------------HTCSSHHHHH
T ss_pred             CCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH------------------cChHHHHHHH
Confidence            99998 899999999999999999999999987 999999999999999997                  5788899999


Q ss_pred             HHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhh
Q 010590          391 VQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQ  470 (506)
Q Consensus       391 l~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~  470 (506)
                      ++.|++++.+           +..|.||||+|+...           ....+++++  ..+.++|.+|..|+||||+|+.
T Consensus       144 l~~g~~~~~~-----------d~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~ga~~~~~~~~g~tpL~~A~~  199 (253)
T 1yyh_A          144 INSHADVNAV-----------DDLGKSALHWAAAVN-----------NVDAAVVLL--KNGANKDMQNNREETPLFLAAR  199 (253)
T ss_dssp             HHTTCCTTCB-----------CTTSCBHHHHHHHHT-----------CHHHHHHHH--HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCCCCCCc-----------CCCCCCHHHHHHHcC-----------CHHHHHHHH--HcCCCCCCcCCCCCCHHHHHHH
Confidence            9999999988           456779999985322           233344444  3458899999999999999999


Q ss_pred             cCC
Q 010590          471 MGS  473 (506)
Q Consensus       471 ~gs  473 (506)
                      .|+
T Consensus       200 ~~~  202 (253)
T 1yyh_A          200 EGS  202 (253)
T ss_dssp             HTC
T ss_pred             CCC
Confidence            984

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=5.2e-30  Score=258.54  Aligned_cols=180  Identities=13%  Similarity=0.021  Sum_probs=154.1

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC---CChHHHHHHHHcCCHHHHHHHHHc----CCCCCCC-------
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLEL----GAADVNY-------  314 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~---~g~t~Lh~A~~~g~~~~v~~Ll~~----g~~~v~~-------  314 (506)
                      ....|..|.||||+|+..|+.++|++|+ +.|+++   +|.||||+|+..|+.++|++|++.    |+ +++.       
T Consensus        46 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~  123 (364)
T 3ljn_A           46 PTIQNRFGCTALHLACKFGCVDTAKYLA-SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ-MPESLLNECDE  123 (364)
T ss_dssp             TTCCCTTCCCHHHHHHHHCCHHHHHHHH-HHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTC-CHHHHHTCCCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCC-CHHHHHhhcch
Confidence            3456788999999999999999999999 555544   689999999999999999999998    87 7776       


Q ss_pred             ----------CCCCCCChHHHHHHHhC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCC
Q 010590          315 ----------PAGPAGKTPLHIAAEMV--SPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPN  382 (506)
Q Consensus       315 ----------~~~~~g~tpLh~A~~~~--~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~  382 (506)
                                .+ ..|+||||+|+..|  +.+++++|+++|++++.+|..|+||||+|+.                  .+
T Consensus       124 ~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~------------------~g  184 (364)
T 3ljn_A          124 REVNEIGSHVKH-CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAME------------------FR  184 (364)
T ss_dssp             CCEEEETTEEEE-ESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH------------------TT
T ss_pred             HhhhhhccccCC-CCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHH------------------cC
Confidence                      77 78999999999999  9999999999999999999999999999998                  78


Q ss_pred             hHHHHHHHHHhccC-----ccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccC
Q 010590          383 KLRLCLELVQSAAL-----VLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLG  457 (506)
Q Consensus       383 ~~~~~~~Ll~~ga~-----~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~  457 (506)
                      +.+++++|++.|++     ++.+           +..|.||||+|+..           +...++++++  ..++++|.+
T Consensus       185 ~~~~v~~Ll~~g~~~~~~~~~~~-----------~~~g~t~L~~A~~~-----------g~~~~v~~Ll--~~gad~~~~  240 (364)
T 3ljn_A          185 NREALDLMMDTVPSKSSLRLDYA-----------NKQGNSHLHWAILI-----------NWEDVAMRFV--EMGIDVNME  240 (364)
T ss_dssp             CHHHHHHHHHHCSCSSSCCTTCC-----------CTTCCCTTHHHHTT-----------TCHHHHHHHH--TTTCCTTCC
T ss_pred             CHHHHHHHHhccccccccccccc-----------CCCCCcHHHHHHHc-----------CCHHHHHHHH--HcCCCCCCC
Confidence            99999999999998     6655           66788999998532           2334455555  355899999


Q ss_pred             CCCCCCcchhhhhcCC
Q 010590          458 AGTGNSAHHHHHQMGS  473 (506)
Q Consensus       458 D~~G~T~LH~Aa~~gs  473 (506)
                      |..|+||||+|+..|.
T Consensus       241 d~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          241 DNEHTVPLYLSVRAAM  256 (364)
T ss_dssp             CTTSCCHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHhCh
Confidence            9999999999999984

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=2.7e-29  Score=243.13  Aligned_cols=196  Identities=20%  Similarity=0.135  Sum_probs=156.3

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      +..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|+++|+ +++.++ ..|+||||+|
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A  112 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLL-RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECD-FYGFTAFMEA  112 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBC-TTCCBHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccC-cccCCHHHHH
Confidence            667899999999999999999999 666654     58899999999999999999999999 999998 8999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHHH-----HHHHHHHc-CCCCCCcccC----------C
Q 010590          328 AEMVSPDMVAVLLDHHADPNVR----------TVDGVTPLDILRT-----LTSDFLFK-GAVPGLTHIE----------P  381 (506)
Q Consensus       328 ~~~~~~~~v~~Ll~~ga~~~~~----------d~~g~tpLh~A~~-----~~~~~l~~-~~~~~~~~~~----------~  381 (506)
                      +..|+.+++++|+++|++++.+          +..|.||||+|+.     ....++.. |++++.....          .
T Consensus       113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  192 (285)
T 1wdy_A          113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC
T ss_pred             HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            9999999999999999999887          7889999999994     33444544 6666544322          2


Q ss_pred             Ch----HHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccC
Q 010590          382 NK----LRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLG  457 (506)
Q Consensus       382 ~~----~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~  457 (506)
                      +.    .+++++|++.|++++.+           +..|.||||+|+..           +....+++++. ..++++|.+
T Consensus       193 ~~~~~~~~i~~~Ll~~g~~~~~~-----------~~~g~t~L~~A~~~-----------~~~~~v~~Ll~-~~g~~~~~~  249 (285)
T 1wdy_A          193 SDDSDVEAITHLLLDHGADVNVR-----------GERGKTPLILAVEK-----------KHLGLVQRLLE-QEHIEINDT  249 (285)
T ss_dssp             SCTTTHHHHHHHHHHTTCCSSCC-----------CTTSCCHHHHHHHT-----------TCHHHHHHHHH-SSSCCTTCC
T ss_pred             cccchHHHHHHHHHHcCCCCCCc-----------CCCCCcHHHHHHHc-----------CCHHHHHHHHh-ccCCCcccc
Confidence            23    67788888888888876           45677999998532           22333444443 245789999


Q ss_pred             CCCCCCcchhhhhcCCC
Q 010590          458 AGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       458 D~~G~T~LH~Aa~~gs~  474 (506)
                      |..|+||||+|+..|+.
T Consensus       250 ~~~g~t~l~~A~~~~~~  266 (285)
T 1wdy_A          250 DSDGKTALLLAVELKLK  266 (285)
T ss_dssp             CTTSCCHHHHHHHTTCH
T ss_pred             CCCCCcHHHHHHHcCcH
Confidence            99999999999998843

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=3.4e-30  Score=252.26  Aligned_cols=195  Identities=22%  Similarity=0.186  Sum_probs=158.8

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...+..|.||||+||..|+.++|++|+ +.|+++     +|.||||+|+..|+.++|++|+++|+ +++.+| ..|+|||
T Consensus        34 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~-~~g~tpL  110 (299)
T 1s70_B           34 TKVKFDDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPD-NEGWIPL  110 (299)
T ss_dssp             CCCEECHHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             cccccCCccHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCC-CCCCcHH
Confidence            344668899999999999999999999 556544     58999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----HHHHH------------------------------
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLT-----SDFLF------------------------------  369 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~-----~~~l~------------------------------  369 (506)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+...     ..++.                              
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            9999999999999999999999999999999999997322     11111                              


Q ss_pred             -------cCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccccc
Q 010590          370 -------KGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNN  442 (506)
Q Consensus       370 -------~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~  442 (506)
                             .|..|...++..++.+++++|++.|++++.+           +..|.||||+|+...           ....+
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~-----------d~~g~tpL~~A~~~~-----------~~~~v  248 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-----------DYDGWTPLHAAAHWG-----------KEEAC  248 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-----------CTTCCCHHHHHHHTT-----------CHHHH
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCc-----------CCCCCcHHHHHHhcC-----------CHHHH
Confidence                   1223333344467789999999999999987           556779999985322           23344


Q ss_pred             ccccCCCcceeeccCCCCCCCcchhhhhc
Q 010590          443 SLNLDSSRLVYLNLGAGTGNSAHHHHHQM  471 (506)
Q Consensus       443 ~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~  471 (506)
                      ++++  ..++++|.+|..|+||||+|+..
T Consensus       249 ~~Ll--~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          249 RILV--ENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHHH--HTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HHHH--HcCCCCCCcCCCCCCHHHHHHHH
Confidence            4555  34588999999999999999764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=2.3e-29  Score=237.78  Aligned_cols=179  Identities=23%  Similarity=0.215  Sum_probs=157.6

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|++.|+ +++.++ ..|.|||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L   81 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLV-QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKD-AEGSTCL   81 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCCC-TTSCCHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHH-HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCC-CCCCcHH
Confidence            356889999999999999999999999 666654     58999999999999999999999999 999998 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccC
Q 010590          325 HIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG  403 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~  403 (506)
                      |+|+..|+.+++++|+++| ++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+   
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~------------------~~~~~~~~~Ll~~g~~~~~~---  140 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE------------------YKHVDLVKLLLSKGSDINIR---  140 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC---
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCCCcc---
Confidence            9999999999999999998 8999999999999999998                  78999999999999999887   


Q ss_pred             CCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          404 ILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       404 ~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                              +..|.||||.|+...           ....+++.+  ..+.++|.+|..|+||||+|+..|.
T Consensus       141 --------~~~g~t~L~~A~~~~-----------~~~~~~~Ll--~~g~~~~~~~~~g~t~L~~A~~~~~  189 (237)
T 3b7b_A          141 --------DNEENICLHWAAFSG-----------CVDIAEILL--AAKCDLHAVNIHGDSPLHIAARENR  189 (237)
T ss_dssp             --------CTTSCCHHHHHHHHC-----------CHHHHHHHH--TTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             --------CCCCCCHHHHHHHCC-----------CHHHHHHHH--HcCCCCCCcCCCCCCHHHHHHHhCC
Confidence                    456779999984322           223344444  3458899999999999999999984

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=4.2e-29  Score=249.44  Aligned_cols=233  Identities=19%  Similarity=0.172  Sum_probs=163.6

Q ss_pred             HHHHHHhhcccchhHHHhhccccccccccc-ccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChH
Q 010590          214 VVAKIEDLRHKSSLARRSLISHHHHHHHHD-LSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEAL  287 (506)
Q Consensus       214 ~~~~l~~~~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t  287 (506)
                      ......+..+.++|................ .........|..|.||||+|+..|+.+++++|+ +.|+++     +|+|
T Consensus        15 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t   93 (351)
T 3utm_A           15 AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL-QHGADVHAKDKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCC
T ss_pred             eeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCc
Confidence            334444555677777766555444322111 123334456788999999999999999999999 666655     4889


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH---
Q 010590          288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLT---  364 (506)
Q Consensus       288 ~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~---  364 (506)
                      |||+|+..|+.+++++|+++|+ +++.++ ..|+||||+|+..|+.+++++|+++|++++..+..|.||+++|+...   
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~  171 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKHGA-CVNAMD-LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE  171 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCC-CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHH
Confidence            9999999999999999999999 999998 89999999999999999999999999999988888888887764110   


Q ss_pred             -----------------------HHHHHcCC----------CCCCcccCC---ChHHHHHHHHHhccCccccccCCCCCC
Q 010590          365 -----------------------SDFLFKGA----------VPGLTHIEP---NKLRLCLELVQSAALVLSREEGILNEP  408 (506)
Q Consensus       365 -----------------------~~~l~~~~----------~~~~~~~~~---~~~~~~~~Ll~~ga~~~~~~~~~~~~~  408 (506)
                                             ..++..+.          .|...+...   +..+++++|++.|++++.+        
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~--------  243 (351)
T 3utm_A          172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK--------  243 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC--------
T ss_pred             HHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc--------
Confidence                                   01111110          111111112   5678899999999999887        


Q ss_pred             CCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          409 SSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       409 ~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                         +..|.||||+|+...           ...++++++  ..++++|.+|..|+||||+|+..|+
T Consensus       244 ---~~~g~t~L~~A~~~g-----------~~~~v~~Ll--~~ga~~n~~d~~g~t~L~~A~~~~~  292 (351)
T 3utm_A          244 ---NKDFMTPLHVAAERA-----------HNDVMEVLH--KHGAKMNALDSLGQTALHRAALAGH  292 (351)
T ss_dssp             ---CTTCCCHHHHHHHTT-----------CHHHHHHHH--HTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ---CCCCCCHHHHHHHcC-----------CHHHHHHHH--HCCCCCCCcCCCCCCHHHHHHHcCc
Confidence               445668888874322           223344444  3447788888888888888888874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=3.6e-29  Score=230.22  Aligned_cols=183  Identities=17%  Similarity=0.142  Sum_probs=154.5

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCCC-----CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGLN-----LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d-----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      +..+.||||.|+..|+.+.++.|+...+.+     .+|+||||+|+..|+.++|++|+++|+ +++.++ ..|+||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-DINLQN-SISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCC-CCCCCHHHHH
Confidence            456899999999999999999999544433     358999999999999999999999999 999998 8999999999


Q ss_pred             HHhCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc-cCccccccCCC
Q 010590          328 AEMVSPDMVAVLL-DHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA-ALVLSREEGIL  405 (506)
Q Consensus       328 ~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~~~  405 (506)
                      +..|+.+++++|+ ..+++++.+|..|+||||+|+.                  .++.+++++|++.| ++++.+     
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~~~~~~~-----  136 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE------------------KGHIDNVKLLLEDGREDIDFQ-----  136 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHH------------------TTCHHHHHHHHHHCCCCTTCC-----
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHH------------------cCCHHHHHHHHHcCCCCcCCC-----
Confidence            9999999999999 5688999999999999999998                  78999999999999 888887     


Q ss_pred             CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          406 NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                            +..|.||||.|+.....      ......++++++  +.++++|.+|..|+||||+|++.|..
T Consensus       137 ------~~~g~t~L~~A~~~~~~------~~~~~~~v~~Ll--~~ga~~~~~~~~g~t~l~~A~~~~~~  191 (201)
T 3hra_A          137 ------NDFGYTALIEAVGLREG------NQLYQDIVKLLM--ENGADQSIKDNSGRTAMDYANQKGYT  191 (201)
T ss_dssp             ------CTTSCCHHHHHHHSSCC------SHHHHHHHHHHH--HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             ------CCCCCCHHHHHHHhccc------hhhHHHHHHHHH--HCCCCCCccCCCCCCHHHHHHHcCCH
Confidence                  55677999998532210      000133445555  34588999999999999999999853

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=1.3e-28  Score=245.68  Aligned_cols=196  Identities=20%  Similarity=0.150  Sum_probs=143.0

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCCCCC------ChHHHHHHHHcCCHHHHHHHHHcCCCCCCC------------
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGLNLD------EALALHYAVENCSREVVKALLELGAADVNY------------  314 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~------g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~------------  314 (506)
                      +.+|.||||.|+..|++++|++|| +.|+|++      |+||||+||..|+.++|++||++|+ +++.            
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL-~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-chhhhccCCCchhHHH
Confidence            456889999999999999999999 6676652      7899999999999999999999988 6654            


Q ss_pred             ---------------------CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHHH-
Q 010590          315 ---------------------PAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVR----------TVDGVTPLDILRT-  362 (506)
Q Consensus       315 ---------------------~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~----------d~~g~tpLh~A~~-  362 (506)
                                           +| ..|+||||+|+..|+.+++++|+++|++++.+          +..|.||||+|+. 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d-~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HhcccchhhHHhhhccchhhhhc-cCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence                                 44 56788888888888888888888888877654          3457888888874 


Q ss_pred             ----HHHHHHH-cCCCCCCcccC--------------CChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          363 ----LTSDFLF-KGAVPGLTHIE--------------PNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       363 ----~~~~~l~-~~~~~~~~~~~--------------~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                          .++.+|. .|++++.....              .....++++|+++|++++.+           +..|.||||+|+
T Consensus       179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~-----------d~~g~t~L~~a~  247 (337)
T 4g8k_A          179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-----------GERGKTPLILAV  247 (337)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC-----------CGGGCCHHHHHH
T ss_pred             CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc-----------CCCCCCHHHHHH
Confidence                3334443 36666544322              11234567777777777766           567789999985


Q ss_pred             cCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          424 CSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      ...           ....+..++. ...+++|.+|.+|+||||+|++.|+.
T Consensus       248 ~~~-----------~~~~v~~Ll~-~~~~~vn~~d~~G~TpL~~A~~~g~~  286 (337)
T 4g8k_A          248 EKK-----------HLGLVQRLLE-QEHIEINDTDSDGKTALLLAVELKLK  286 (337)
T ss_dssp             HTT-----------CHHHHHHHHT-STTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             Hhh-----------hhHHHHHHHH-hcCCcccCcCCCCCCHHHHHHHcCCH
Confidence            322           1222333332 34578999999999999999999853

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=243.62  Aligned_cols=197  Identities=18%  Similarity=0.198  Sum_probs=142.5

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-------------CCCChHHHHHHHHcCCHH-HHHHHHHcCCCCCCCC
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-------------NLDEALALHYAVENCSRE-VVKALLELGAADVNYP  315 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-------------d~~g~t~Lh~A~~~g~~~-~v~~Ll~~g~~~v~~~  315 (506)
                      ...|.++.+||+.||..|+.++|++|| +.+.             +..|.||||+|+..+..+ ++++|++.|+ ++|.+
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL-~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga-dvn~~   82 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLL-EWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL-GVNVT   82 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHH-TCC----------------------------------------CCC-CTTCC
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHH-HCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC-CCCCc
Confidence            345788999999999999999999999 5443             234789999999887764 8899999999 99999


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-----HHHHHHHcCCCCCCcccC----------
Q 010590          316 AGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT-----LTSDFLFKGAVPGLTHIE----------  380 (506)
Q Consensus       316 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~~~~~~~~~----------  380 (506)
                      | ..|+||||+|+..|+.++|++|++.|++++.++..|.||+|+|+.     ....++..|++++.....          
T Consensus        83 d-~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           83 S-QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             C-TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             C-CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9 899999999999999999999999999999999999999999994     445566677777655332          


Q ss_pred             CChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCC
Q 010590          381 PNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGT  460 (506)
Q Consensus       381 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~  460 (506)
                      .++.+++++|++.|++++.+           +..|.||||+|+..           +...++++++  ..++++|.+|.+
T Consensus       162 ~g~~~~v~~Ll~~gadvn~~-----------~~~g~t~Lh~A~~~-----------g~~~~v~~Ll--~~Gad~~~~d~~  217 (269)
T 4b93_B          162 GGHHELVALLLQHGASINAS-----------NNKGNTALHEAVIE-----------KHVFVVELLL--LHGASVQVLNKR  217 (269)
T ss_dssp             TTCGGGHHHHHHTTCCTTCB-----------CTTSCBHHHHHHHT-----------TCHHHHHHHH--HTTCCSCCCCTT
T ss_pred             CCCHHHHHHHHHCCCCCCcc-----------ccCCCcHHHHHHHc-----------CCHHHHHHHH--HCCCCCCCcCCC
Confidence            56677888889988888877           55678999999532           2344556666  346899999999


Q ss_pred             CCCcchhhhhcCC
Q 010590          461 GNSAHHHHHQMGS  473 (506)
Q Consensus       461 G~T~LH~Aa~~gs  473 (506)
                      |+||||+|+++|.
T Consensus       218 G~TpL~~A~~~~~  230 (269)
T 4b93_B          218 QRTAVDCAEQNSK  230 (269)
T ss_dssp             SCCSGGGSCTTCH
T ss_pred             CCCHHHHHHhCCc
Confidence            9999999999884

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=4.7e-30  Score=242.62  Aligned_cols=210  Identities=15%  Similarity=0.064  Sum_probs=136.9

Q ss_pred             hhcccchhHHHhhccccccccccccccc----ccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHH
Q 010590          220 DLRHKSSLARRSLISHHHHHHHHDLSAA----AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALH  290 (506)
Q Consensus       220 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh  290 (506)
                      +..+.|||....................    .....+..|.||||+|+..|+.+++++|+ +.|+++     +|+||||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHH
Confidence            3456777776665444333221111111    23455667788888888888888888888 666644     4778888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC------CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHH
Q 010590          291 YAVENCSREVVKALLELGAAD------VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV-DGVTPLDILRTL  363 (506)
Q Consensus       291 ~A~~~g~~~~v~~Ll~~g~~~------v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~  363 (506)
                      +|+..|+.+++++|++.|+ +      ++..+ ..|+||||+|+..|+.+++++|+++|++++.+|. .|+||||+|+. 
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~-  160 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCT-TPHLHSILKATN-YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD-  160 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTT-TTSSSCGGGCCC-TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH-
T ss_pred             HHHHcCCHHHHHHHHhccc-chhHHHHhhccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH-
Confidence            8888888888888888776 4      45555 6788888888888888888888888888888876 78888888876 


Q ss_pred             HHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccc
Q 010590          364 TSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNS  443 (506)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~  443 (506)
                                       .++.+++++|+++|++++.+           +..|.||||+|+.           .+...+++
T Consensus       161 -----------------~~~~~~v~~Ll~~ga~~~~~-----------~~~g~tpl~~A~~-----------~~~~~~~~  201 (236)
T 1ikn_D          161 -----------------LQNPDLVSLLLKCGADVNRV-----------TYQGYSPYQLTWG-----------RPSTRIQQ  201 (236)
T ss_dssp             -----------------TTCHHHHHHHHTTTCCSCCC-----------CTTCCCGGGGCTT-----------SSCHHHHH
T ss_pred             -----------------cCCHHHHHHHHHcCCCCCcc-----------cCCCCCHHHHHHc-----------cCchHHHH
Confidence                             67778888888888887776           4456688888732           12233344


Q ss_pred             cccCCCcceeeccCCCCCCCcchhhhhcC
Q 010590          444 LNLDSSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       444 ~~~~~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      +++........+.++..|.||.+.++...
T Consensus       202 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          202 QLGQLTLENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             HHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred             HHHHcchhhhhcCCccchHHHHhhhcccc
Confidence            44421222233477778888877776655

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=4.7e-29  Score=234.01  Aligned_cols=174  Identities=20%  Similarity=0.194  Sum_probs=149.1

Q ss_pred             ccHHHHHHHhcCCHHHHHHHHhcCC------CCCCChHHHHHHHHcCCHHHHHHHHHcC--CCCCCC-CCCCCCChHHHH
Q 010590          256 KIRRMRRALDSSDVELVKLMVMGEG------LNLDEALALHYAVENCSREVVKALLELG--AADVNY-PAGPAGKTPLHI  326 (506)
Q Consensus       256 g~t~L~~A~~~g~~~~v~~Ll~~~~------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~~~v~~-~~~~~g~tpLh~  326 (506)
                      |.||||+|+..|+.++++.|++ .+      .|.+|+||||+|+..|+.+++++|++.|  . +++. .+ ..|+||||+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~-~~g~t~L~~   78 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-NLDDYPD-DSGWTPFHI   78 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHH-HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC-CGGGCCC-TTSCCHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHh-cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc-cccccCC-CCCCCHHHH
Confidence            6899999999999999999993 33      3557999999999999999999999999  5 5555 66 899999999


Q ss_pred             HHHhCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          327 AAEMVSPDMVAVLLDHH--ADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~g--a~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+..|+.+++++|+++|  ++++.+|..|+||||+|+.                  .++.+++++|+++|++++.+    
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~------------------~~~~~~~~~Ll~~g~~~~~~----  136 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG------------------KKWFEVSQFLIENGASVRIK----  136 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHTTCCSCCC----
T ss_pred             HHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHH------------------cCCHhHHHHHHHcCCCcccc----
Confidence            99999999999999998  9999999999999999998                  78999999999999999987    


Q ss_pred             CCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          405 LNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       405 ~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                             +..|.||||+|+...           ....+++.++ ....++|.+|..|+||||+|+..|+
T Consensus       137 -------~~~g~t~L~~A~~~~-----------~~~~v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~  186 (228)
T 2dzn_A          137 -------DKFNQIPLHRAASVG-----------SLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGH  186 (228)
T ss_dssp             -------CTTSCCHHHHHHHTT-----------CHHHHHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             -------CCCCCCHHHHHHHcC-----------CHHHHHHHHh-cCcccccCcCCCCCCHHHHHHHcCC
Confidence                   456779999985322           2334455553 2227899999999999999999884

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=5.9e-29  Score=242.39  Aligned_cols=177  Identities=20%  Similarity=0.150  Sum_probs=153.5

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.++|++|+++|+ +++.+| ..|+|||
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~-~~g~t~L  129 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA-QVNGVT-ADWHTPL  129 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHH-HTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTC-CSSCCC-TTCCCHH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC-CCCCCC-CCCCCHH
Confidence            457889999999999999999999999 667655     58999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++..+ .|+||||+|+.                  .++.+++++|++.|++++.+    
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~------------------~g~~~~v~~Ll~~g~~~~~~----  186 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR------------------RGHVECVNSLIAYGGNIDHK----  186 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH------------------HTCHHHHHHHHHTTCCTTCC----
T ss_pred             HHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH------------------cCCHHHHHHHHHCCCCCCCc----
Confidence            99999999999999999999998754 59999999998                  68899999999999999887    


Q ss_pred             CCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          405 LNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       405 ~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                             +..|.||||+|+...           ....+++++  ..+.++|. |..|+||||+|+..|+
T Consensus       187 -------d~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~ga~~~~-~~~g~t~L~~A~~~~~  234 (285)
T 3d9h_A          187 -------ISHLGTPLYLACENQ-----------QRACVKKLL--ESGADVNQ-GKGQDSPLHAVVRTAS  234 (285)
T ss_dssp             -------BTTTBCHHHHHHHTT-----------CHHHHHHHH--HTTCCTTC-CBTTBCHHHHHHHTTC
T ss_pred             -------CCCCCCHHHHHHHcC-----------cHHHHHHHH--HCCCCCCC-CCCCCCHHHHHHHcCC
Confidence                   556779999985322           223344444  23467884 9999999999999985

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=7.1e-30  Score=248.91  Aligned_cols=178  Identities=15%  Similarity=0.064  Sum_probs=156.2

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC---CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL---DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~---~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.|+++   +|+||||+|+..|+.++|++|+++|+ +++.+| ..|+||||+
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d-~~g~t~L~~  101 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLL-NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGL-DDSQFD-DKGNTALYY  101 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTC-CTTCCC-TTSCCHHHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcC-CCCCcHHHH
Confidence            456889999999999999999999999 667765   58999999999999999999999999 999998 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCC-CcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCC
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDG-VTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGIL  405 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g-~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~  405 (506)
                      |+..|+.+++++|+++|++++.+|..| .||||+|+.                  .++.+++++|++.|+++...     
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~------------------~~~~~~v~~Ll~~g~~~~~~-----  158 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM------------------LNDVSIVSYFLSEIPSTFDL-----  158 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHH------------------TTCHHHHHHHHTTSCTTCCC-----
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH------------------cCCHHHHHHHHhCCCccccc-----
Confidence            999999999999999999999999999 799999998                  78999999999999876321     


Q ss_pred             CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCc-chhhhhcCC
Q 010590          406 NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSA-HHHHHQMGS  473 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~-LH~Aa~~gs  473 (506)
                             ..|.||||+|+..           +...++++++  +.++++|.+|..|+|| ||+|+..|+
T Consensus       159 -------~~g~t~L~~A~~~-----------g~~~~v~~Ll--~~gad~n~~~~~g~t~~L~~A~~~~~  207 (285)
T 3kea_A          159 -------AILLSCIHITIKN-----------GHVDMMILLL--DYMTSTNTNNSLLFIPDIKLAIDNKD  207 (285)
T ss_dssp             -------STHHHHHHHHHHT-----------TCHHHHHHHH--HHHHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred             -------cCCccHHHHHHHc-----------ChHHHHHHHH--HcCCCCCcccCCCCChHHHHHHHcCC
Confidence                   2788999998532           2233445555  3468899999999998 999999984

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=2.9e-28  Score=251.83  Aligned_cols=207  Identities=21%  Similarity=0.236  Sum_probs=139.8

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..+..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|+++|+ +++.++ ..|+||||
T Consensus       141 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~  217 (437)
T 1n11_A          141 CMTKKGFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPA-WNGYTPLH  217 (437)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC-CSCCCC-TTCCCHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCcC-CCCCCHHH
Confidence            34566778888888888888888877 455533     46778888888888888888888877 777776 67778888


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-----HHHHHHHcCCCCCCcccC----------CChHHHHHHH
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT-----LTSDFLFKGAVPGLTHIE----------PNKLRLCLEL  390 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~~~~~~~~~----------~~~~~~~~~L  390 (506)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+.     ....++.++++++.....          .++.+++++|
T Consensus       218 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  297 (437)
T 1n11_A          218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL  297 (437)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8888888888888888887777777778888887773     344445556655444322          4677889999


Q ss_pred             HHhccCccccccCCCC----------------------CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCC
Q 010590          391 VQSAALVLSREEGILN----------------------EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDS  448 (506)
Q Consensus       391 l~~ga~~~~~~~~~~~----------------------~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (506)
                      +++|++++.++..|.+                      .++..+..|.||||+|+..           +...++++++  
T Consensus       298 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~-----------g~~~iv~~Ll--  364 (437)
T 1n11_A          298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ-----------GHTDIVTLLL--  364 (437)
T ss_dssp             HHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-----------TCHHHHHHHH--
T ss_pred             HhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC-----------ChHHHHHHHH--
Confidence            9999999988776664                      2234455566666665321           1222333433  


Q ss_pred             CcceeeccCCCCCCCcchhhhhcCC
Q 010590          449 SRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       449 ~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      ..++++|.+|.+|+||||+|++.|.
T Consensus       365 ~~ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          365 KNGASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             HTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             HCcCCCCCCCCCCCCHHHHHHHcCc
Confidence            2335666666666666666666664

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=2.8e-29  Score=240.35  Aligned_cols=177  Identities=18%  Similarity=0.150  Sum_probs=145.5

Q ss_pred             ccHHHHHHHhcCCHH----HHHHHHhcCCC---------CCCChHHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC---
Q 010590          256 KIRRMRRALDSSDVE----LVKLMVMGEGL---------NLDEALALHYAVEN---CSREVVKALLELGAADVNYPA---  316 (506)
Q Consensus       256 g~t~L~~A~~~g~~~----~v~~Ll~~~~~---------d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~v~~~~---  316 (506)
                      |.||||+|+..|+.+    ++++|+ ..|+         |.+|+||||+|+..   |+.++|++|++.|+ +++..+   
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~-~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~-~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLR-WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK-DSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHH-HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH-HTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHH-HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC-cccchhhhc
Confidence            789999999999997    556666 3443         33689999999999   99999999999998 776322   


Q ss_pred             -------CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHHHHHHHHcCCCCCC
Q 010590          317 -------GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVD-------------GVTPLDILRTLTSDFLFKGAVPGL  376 (506)
Q Consensus       317 -------~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~-------------g~tpLh~A~~~~~~~l~~~~~~~~  376 (506)
                             +..|+||||+|+..|+.+++++|+++|++++.+|..             |+||||+|+.              
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~--------------  145 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC--------------  145 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH--------------
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH--------------
Confidence                   157999999999999999999999999999999987             9999999998              


Q ss_pred             cccCCChHHHHHHHHH---hccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccc-------cccccc
Q 010590          377 THIEPNKLRLCLELVQ---SAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATIN-------NNSLNL  446 (506)
Q Consensus       377 ~~~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~-------~~~~~~  446 (506)
                          .++.+++++|++   .|++++.+           +..|.||||+|+....         +...       ++++++
T Consensus       146 ----~~~~~~v~~Ll~~~~~ga~~n~~-----------d~~g~TpLh~A~~~~~---------~~~~~~~~~~~iv~~Ll  201 (256)
T 2etb_A          146 ----TKQWDVVTYLLENPHQPASLEAT-----------DSLGNTVLHALVMIAD---------NSPENSALVIHMYDGLL  201 (256)
T ss_dssp             ----TTCHHHHHHHHHCSSCCCCTTCC-----------CTTSCCHHHHHHHHCC---------SCHHHHHHHHHHHHHHH
T ss_pred             ----cCCHHHHHHHHhccccCCCcCcc-----------CCCCCCHHHHHHHccc---------CCchhhHHHHHHHHHHH
Confidence                789999999999   99999988           5567799999853111         1111       334444


Q ss_pred             CCCcceee-------ccCCCCCCCcchhhhhcCCC
Q 010590          447 DSSRLVYL-------NLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       447 ~~~~~~~l-------n~~D~~G~T~LH~Aa~~gs~  474 (506)
                        ..++++       |.+|..|+||||+|+..|..
T Consensus       202 --~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  234 (256)
T 2etb_A          202 --QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI  234 (256)
T ss_dssp             --HHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             --HcCCCcccccccccccCCCCCCHHHHHHHhCCH
Confidence              344667       99999999999999999953

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=1.1e-28  Score=232.15  Aligned_cols=176  Identities=23%  Similarity=0.235  Sum_probs=153.6

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCC-----CCCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEG-----LNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~-----~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      ..+.+|||.|+..|+.++++.|+...+     .+.+|.||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+|+
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~   81 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDKD-DAGWSPLHIAA   81 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCC-TTSCCHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC-CCCCcC-CCCCCHHHHHH
Confidence            457899999999999999999994322     25579999999999999999999999999 999998 89999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCC
Q 010590          329 EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEP  408 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~  408 (506)
                      ..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+        
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~~~~Ll~~g~~~~~~--------  135 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS------------------KNRHEIAVMLLEGGANPDAK--------  135 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC--------
T ss_pred             HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCCCCc--------
Confidence            9999999999999999999999999999999998                  78999999999999999887        


Q ss_pred             CCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          409 SSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       409 ~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                         +..|.||||.|+...           ....+++.+  ..+.++|.+|..|+||||+|+..|+
T Consensus       136 ---~~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~g~~~~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          136 ---DHYDATAMHRAAAKG-----------NLKMVHILL--FYKASTNIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             ---CTTSCCHHHHHHHHT-----------CHHHHHHHH--HTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             ---CCCCCcHHHHHHHcC-----------CHHHHHHHH--hcCCCccccCCCCCCHHHHHHHCCC
Confidence               456779999985322           233344444  2447899999999999999999984

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=1.1e-30  Score=252.73  Aligned_cols=215  Identities=17%  Similarity=0.104  Sum_probs=151.7

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHh---cCCC---------CCCChHHHHHHHHc---CCHHHHHHHHHcCCCCC--
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVM---GEGL---------NLDEALALHYAVEN---CSREVVKALLELGAADV--  312 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~---------d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~v--  312 (506)
                      ...|..|.||||+|+..|+.++|+.|++   ..+.         |.+|+||||+|+..   |+.++|++|++.|+ ++  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga-~~~~   85 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR-KTDS   85 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH-HTTC
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc-cccc
Confidence            3468899999999999999999999984   2333         34699999999987   99999999999987 53  


Q ss_pred             -----CC----CCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC--------------CCCcHHHHHHHHHHHHHH
Q 010590          313 -----NY----PAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTV--------------DGVTPLDILRTLTSDFLF  369 (506)
Q Consensus       313 -----~~----~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~--------------~g~tpLh~A~~~~~~~l~  369 (506)
                           |.    +| ..|+||||+|+..|+.+++++|+++|++++.+|.              .|+||||+|+.       
T Consensus        86 ~~~~i~~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~-------  157 (273)
T 2pnn_A           86 LKQFVNASYTDSY-YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-------  157 (273)
T ss_dssp             HHHHHTCCCCSTT-TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHH-------
T ss_pred             hhHHhhccccccc-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHH-------
Confidence                 32    45 6899999999999999999999999999999997              79999999998       


Q ss_pred             cCCCCCCcccCCChHHHHHHHHH---hccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcc--cccccc
Q 010590          370 KGAVPGLTHIEPNKLRLCLELVQ---SAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSAT--INNNSL  444 (506)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~--~~~~~~  444 (506)
                                 .++.+++++|++   .|++++.+           +..|.||||+|+.......    ....  ..++++
T Consensus       158 -----------~g~~~~v~~Ll~~~~~gad~~~~-----------d~~g~tpLh~A~~~~~~~~----~~~~~~~~~v~~  211 (273)
T 2pnn_A          158 -----------TNQLAIVKFLLQNSWQPADISAR-----------DSVGNTVLHALVEVADNTV----DNTKFVTSMYNE  211 (273)
T ss_dssp             -----------TTCHHHHHHHHHCSSCCCCTTCC-----------CTTSCCHHHHHHHHCCSCH----HHHHHHHHHHHH
T ss_pred             -----------cCCHHHHHHHHhcccCCCCceee-----------CCCCCcHHHHHHHccCcch----hHHHHHHHHHHH
Confidence                       789999999999   99999988           5567799999853221000    0000  122233


Q ss_pred             ccCCCcceeec-------cCCCCCCCcchhhhhcCCCCCCCCCCCCchhhhhhhhcCCCCccccc
Q 010590          445 NLDSSRLVYLN-------LGAGTGNSAHHHHHQMGSSRMDGDDDSSHQSQREAVNRHDPSIYHHH  502 (506)
Q Consensus       445 ~~~~~~~~~ln-------~~D~~G~T~LH~Aa~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (506)
                      ++  ..+.++|       .+|..|+||||+|+..|+...- .-..+.|+.+.....+.+..+++|
T Consensus       212 Ll--~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv-~~Ll~~ga~dp~~~~~~~~~~~~~  273 (273)
T 2pnn_A          212 IL--ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL-AYILQREIHEPECRHAAAHHHHHH  273 (273)
T ss_dssp             HH--HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH-HHHHHHHTC---------------
T ss_pred             HH--HhhhhcccccccccccCCCCCCHHHHHHHhChHHHH-HHHHHCCCCCchhhhhhhhhccCC
Confidence            44  2345665       5999999999999999953321 122233443333333344444443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=2e-28  Score=237.00  Aligned_cols=197  Identities=21%  Similarity=0.170  Sum_probs=158.0

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCCCC------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGLNL------DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      .+|.||||+|+..|+.+++++|+ +.|+++      .|+||||+|+..|+.+++++|+++|+ +++.++ ..|+||||+|
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A   79 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRK-KNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccC-CCCCCHHHHH
Confidence            46899999999999999999999 566544      47899999999999999999999999 999998 8999999999


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-----HHHHHHHcCCCCCCcc--------------------cCCC
Q 010590          328 AEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT-----LTSDFLFKGAVPGLTH--------------------IEPN  382 (506)
Q Consensus       328 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~~~~~~~--------------------~~~~  382 (506)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.     ..+.++..|++++...                    ...+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            99999999999999999999999999999999994     4455566666655431                    1135


Q ss_pred             hHHHHHHHHHh-ccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCC
Q 010590          383 KLRLCLELVQS-AALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTG  461 (506)
Q Consensus       383 ~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G  461 (506)
                      +.+++++|++. |++++.+           +..|.||||.|+......       ....+..+.+  ..+.++|.+|..|
T Consensus       160 ~~~~v~~Ll~~~~~~~~~~-----------~~~g~t~l~~a~~~~~~~-------~~~~i~~~Ll--~~g~~~~~~~~~g  219 (285)
T 1wdy_A          160 HVEVLKILLDEMGADVNAC-----------DNMGRNALIHALLSSDDS-------DVEAITHLLL--DHGADVNVRGERG  219 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCC-----------CTTSCCHHHHHHHCSCTT-------THHHHHHHHH--HTTCCSSCCCTTS
T ss_pred             CHHHHHHHHHhcCCCCCcc-----------CCCCCCHHHHHHHccccc-------hHHHHHHHHH--HcCCCCCCcCCCC
Confidence            56777888876 7777766           556779999874322100       0012233344  3457899999999


Q ss_pred             CCcchhhhhcCC
Q 010590          462 NSAHHHHHQMGS  473 (506)
Q Consensus       462 ~T~LH~Aa~~gs  473 (506)
                      +||||+|+..|+
T Consensus       220 ~t~L~~A~~~~~  231 (285)
T 1wdy_A          220 KTPLILAVEKKH  231 (285)
T ss_dssp             CCHHHHHHHTTC
T ss_pred             CcHHHHHHHcCC
Confidence            999999999984

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=2.6e-28  Score=252.18  Aligned_cols=156  Identities=21%  Similarity=0.213  Sum_probs=93.0

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      +..|.||||+|+..|+.+++++|+ +.|+++     .|.||||+|+..|+.++|++|++.|+ +++..+ ..|+||||+|
T Consensus       209 ~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~-~~g~t~L~~A  285 (437)
T 1n11_A          209 AWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-NGNLGN-KSGLTPLHLV  285 (437)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CTTCCC-TTCCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-CCCCCC-CCCCCHHHHH
Confidence            445555566665555555555555 333322     35555555555555555555555555 555555 5555555555


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-----HHHHHHHcCCCCCCccc----------CCChHHHHHHHHH
Q 010590          328 AEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT-----LTSDFLFKGAVPGLTHI----------EPNKLRLCLELVQ  392 (506)
Q Consensus       328 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~~~~~~~~----------~~~~~~~~~~Ll~  392 (506)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.     .++.++..|++++....          ..++.+++++|++
T Consensus       286 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~  365 (437)
T 1n11_A          286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK  365 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence            55555555555555555555555555555555552     33334444444433321          1577788888888


Q ss_pred             hccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          393 SAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       393 ~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                      +|++++.+           +..|.|||++|
T Consensus       366 ~ga~~~~~-----------~~~g~t~l~~A  384 (437)
T 1n11_A          366 NGASPNEV-----------SSDGTTPLAIA  384 (437)
T ss_dssp             TTCCSCCC-----------CSSSCCHHHHH
T ss_pred             CcCCCCCC-----------CCCCCCHHHHH
Confidence            88888877           56777999998

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=5.6e-28  Score=241.29  Aligned_cols=209  Identities=18%  Similarity=0.105  Sum_probs=170.3

Q ss_pred             HhhcccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHH
Q 010590          219 EDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAV  293 (506)
Q Consensus       219 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~  293 (506)
                      .+..+.|||.........................|..|.||||+|+..|+.+++++|+ +.|+++     .|.||||+|+
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll-~~g~~~~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAA  132 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHH
Confidence            3456789998887665544433333333445567889999999999999999999999 667655     4899999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCC-----------------------------------------------------CCCC
Q 010590          294 ENCSREVVKALLELGAADVNYPA-----------------------------------------------------GPAG  320 (506)
Q Consensus       294 ~~g~~~~v~~Ll~~g~~~v~~~~-----------------------------------------------------~~~g  320 (506)
                      ..|+.+++++|+++|+ +++..+                                                     +..|
T Consensus       133 ~~~~~~~v~~Ll~~g~-~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  211 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGA-DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH  211 (351)
T ss_dssp             HTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred             HcCCHHHHHHHHHcCC-CCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence            9999999999999999 987643                                                     1457


Q ss_pred             ChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCc
Q 010590          321 KTPLHIAAEM---VSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALV  397 (506)
Q Consensus       321 ~tpLh~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~  397 (506)
                      +||||+|+..   +..+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|+++
T Consensus       212 ~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~g~~~~v~~Ll~~ga~~  273 (351)
T 3utm_A          212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE------------------RAHNDVMEVLHKHGAKM  273 (351)
T ss_dssp             CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCC
Confidence            8999999998   55899999999999999999999999999998                  78999999999999999


Q ss_pred             cccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhc
Q 010590          398 LSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQM  471 (506)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~  471 (506)
                      +.+           +..|.||||+|+..           +...++++++  ..+.++|.+|..|+||||+|...
T Consensus       274 n~~-----------d~~g~t~L~~A~~~-----------~~~~~v~~Ll--~~gad~~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          274 NAL-----------DSLGQTALHRAALA-----------GHLQTCRLLL--SYGSDPSIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             TCC-----------CTTSCCHHHHHHHH-----------TCHHHHHHHH--HTTCCTTCCCTTSCCHHHHSCHH
T ss_pred             CCc-----------CCCCCCHHHHHHHc-----------CcHHHHHHHH--HcCCCCCCcCCCCCChhhhhhHH
Confidence            988           55677999998532           2233445555  34578999999999999999654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=1e-27  Score=214.72  Aligned_cols=130  Identities=33%  Similarity=0.459  Sum_probs=117.0

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.|+|+     +|+||||+|+..|+.++|++||++|+ ++|.+| ..|+|||
T Consensus        31 n~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-dvn~~d-~~G~TpL  107 (169)
T 4gpm_A           31 NASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-DVNAKD-SDGRTPL  107 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCCC-CCCCCHH
Confidence            346889999999999999999999999 677765     58999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      |+|+..|+.++|++|+++|++++.+|.+|+||||+|+.                  .++.+++++|+++||+++..
T Consensus       108 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~------------------~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          108 HHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE------------------HGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHTC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCcCCC
Confidence            99999999999999999999999999999999999998                  78999999999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=9.5e-28  Score=226.77  Aligned_cols=180  Identities=22%  Similarity=0.137  Sum_probs=151.9

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCC---------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGL---------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      ..|..|.||||+|+..|+.++++.|+ +.+.         |..|+||||+|+..|+.++|++|+++|+ +++.++ ..|+
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~   79 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVI-RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRD-FRGN   79 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCC-C-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCC-TTCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHH-HHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcC-CCCC
Confidence            46889999999999999999999999 3322         2358999999999999999999999999 999999 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhcc
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHHAD------PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA  395 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga  395 (506)
                      ||||+|+..|+.+++++|+++|++      ++..|..|+||||+|+.                  .++.+++++|++.|+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~  141 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI------------------HGYLGIVELLVSLGA  141 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCC
Confidence            999999999999999999999986      57789999999999998                  789999999999999


Q ss_pred             CccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          396 LVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      +++.++.          ..|.||||+|+...           ...++++++  ..++++|.+|..|+||||+|+..|+.
T Consensus       142 ~~~~~~~----------~~g~tpL~~A~~~~-----------~~~~v~~Ll--~~ga~~~~~~~~g~tpl~~A~~~~~~  197 (236)
T 1ikn_D          142 DVNAQEP----------CNGRTALHLAVDLQ-----------NPDLVSLLL--KCGADVNRVTYQGYSPYQLTWGRPST  197 (236)
T ss_dssp             CTTCCCT----------TTCCCHHHHHHHTT-----------CHHHHHHHH--TTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             CCCCCCC----------CCCCCHHHHHHHcC-----------CHHHHHHHH--HcCCCCCcccCCCCCHHHHHHccCch
Confidence            9998732          26779999985322           233445555  34689999999999999999998743

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=1.3e-28  Score=249.29  Aligned_cols=216  Identities=16%  Similarity=0.121  Sum_probs=163.1

Q ss_pred             hhcccchhHHHhhcccccccccccccccccccCC-ccccHHHHHHHhcCCHHHHHHHHh-------cCCCCC-----CCh
Q 010590          220 DLRHKSSLARRSLISHHHHHHHHDLSAAAAADLE-DQKIRRMRRALDSSDVELVKLMVM-------GEGLNL-----DEA  286 (506)
Q Consensus       220 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-------~~~~d~-----~g~  286 (506)
                      +..+.|||............   ..........| ..|.||||+|+..|+.+++++|+.       +.|+++     +|.
T Consensus        91 ~~~g~t~L~~Aa~~~~~~~~---~L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~  167 (373)
T 2fo1_E           91 EPESPIKLHTEAAGSYAITE---PITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN  167 (373)
T ss_dssp             ---CCCHHHHHHHSSSCCCS---CCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred             CCCCccHHHHHhcCCchHHH---HhccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence            44567777766553321111   11112233445 689999999999999988888762       566654     589


Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC---CCCCCCCCCCCcHHHHHHHH
Q 010590          287 LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH---ADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       287 t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpLh~A~~~  363 (506)
                      ||||+|+..|+.++|++|+++|+ +++.++ ..|+||||+|+..|+.+++++|+++|   ++++..|..|+||||+|+. 
T Consensus       168 TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~-  244 (373)
T 2fo1_E          168 TPLMLAVLARRRRLVAYLMKAGA-DPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH-  244 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC-CSCCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH-
T ss_pred             CHHHHHHHcChHHHHHHHHHCCC-CCcccC-CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHH-
Confidence            99999999999999999999999 999998 89999999999999999999999998   8999999999999999997 


Q ss_pred             HHHHHHcCCCCCCcccCCC---hHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccc
Q 010590          364 TSDFLFKGAVPGLTHIEPN---KLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATIN  440 (506)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~---~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~  440 (506)
                                       .+   ..+++++|++.|++++..+.   ...+..+..|.||||+|+..           +...
T Consensus       245 -----------------~~~~~~~~~v~~Ll~~g~~~~~~~~---~~~~~~d~~g~t~Lh~A~~~-----------g~~~  293 (373)
T 2fo1_E          245 -----------------NEGRDQVASAKLLVEKGAKVDYDGA---ARKDSEKYKGRTALHYAAQV-----------SNMP  293 (373)
T ss_dssp             -----------------SCSTTHHHHHHHHHHHTCCSSCCSG---GGTSSSSCCCCCTHHHHHSS-----------CCHH
T ss_pred             -----------------hCCcchHHHHHHHHHCCCCcccccc---cccCcccccCCCHHHHHHHh-----------CCHH
Confidence                             44   89999999999999997532   22334566788888888432           2233


Q ss_pred             ccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          441 NNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       441 ~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      ++++++. ....++|.+|..|+||||+|+..|+
T Consensus       294 ~v~~Ll~-~~~~~~n~~d~~g~TpL~~A~~~g~  325 (373)
T 2fo1_E          294 IVKYLVG-EKGSNKDKQDEDGKTPIMLAAQEGR  325 (373)
T ss_dssp             HHHHHHH-HSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHH-hcCCCccCcCCCCCCHHHHHHHcCC
Confidence            3444442 2236778888888888888888773

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=1.3e-28  Score=249.42  Aligned_cols=209  Identities=15%  Similarity=0.094  Sum_probs=170.7

Q ss_pred             hcccchhHHHhhccccccccccc--------ccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChH
Q 010590          221 LRHKSSLARRSLISHHHHHHHHD--------LSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEAL  287 (506)
Q Consensus       221 ~~~~~~l~~a~~~~~~~~~~~l~--------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t  287 (506)
                      ..+.|||................        .........|..|.||||+|+..|+.++|++|+ +.|+++     +|.|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM-KAGADPTIYNKSERS  201 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTCCC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHH-HCCCCCcccCCCCCC
Confidence            45788888766544332221111        122334456889999999999999999999999 677755     4899


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCChHHHHHHHhC---CHHHHHHHHHCCCCCCC--------CCCCC
Q 010590          288 ALHYAVENCSREVVKALLELG---AADVNYPAGPAGKTPLHIAAEMV---SPDMVAVLLDHHADPNV--------RTVDG  353 (506)
Q Consensus       288 ~Lh~A~~~g~~~~v~~Ll~~g---~~~v~~~~~~~g~tpLh~A~~~~---~~~~v~~Ll~~ga~~~~--------~d~~g  353 (506)
                      |||+|+..|+.+++++|++.|   + +++..| ..|+||||+|+..+   +.+++++|+++|++++.        +|..|
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~d-~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g  279 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKG-DIEELD-RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  279 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHH-TTSCCC-TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCcccc-ChhhcC-CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence            999999999999999999998   7 999998 89999999999998   89999999999999986        67899


Q ss_pred             CcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc-cCccccccCCCCCCCCCCccccCCCCCCccCccCCCCC
Q 010590          354 VTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA-ALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNS  432 (506)
Q Consensus       354 ~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~  432 (506)
                      +||||+|+.                  .++.+++++|++.| ++++.+           +..|.||||+|+..       
T Consensus       280 ~t~Lh~A~~------------------~g~~~~v~~Ll~~~~~~~n~~-----------d~~g~TpL~~A~~~-------  323 (373)
T 2fo1_E          280 RTALHYAAQ------------------VSNMPIVKYLVGEKGSNKDKQ-----------DEDGKTPIMLAAQE-------  323 (373)
T ss_dssp             CCTHHHHHS------------------SCCHHHHHHHHHHSCCCTTCC-----------CTTCCCHHHHHHHH-------
T ss_pred             CCHHHHHHH------------------hCCHHHHHHHHHhcCCCccCc-----------CCCCCCHHHHHHHc-------
Confidence            999999997                  78999999999887 999887           55677999998532       


Q ss_pred             CCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          433 SSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                          +...++++++  ..++++|.+|..|+||||+|+..|+.
T Consensus       324 ----g~~~iv~~Ll--~~gad~~~~d~~g~t~l~~A~~~g~~  359 (373)
T 2fo1_E          324 ----GRIEVVMYLI--QQGASVEAVDATDHTARQLAQANNHH  359 (373)
T ss_dssp             ----TCHHHHHHHH--HTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             ----CCHHHHHHHH--HcCCCccCCCCCCCCHHHHHHHcCCH
Confidence                2233445555  34589999999999999999999853

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=5.2e-28  Score=228.10  Aligned_cols=180  Identities=19%  Similarity=0.181  Sum_probs=107.2

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL------DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ..+..|.||||+|+..|+.+++++|+ +.+.++      .|.||||+|+..|+.+++++|++.|+ +++.++ ..|+|||
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~l  113 (240)
T 3eu9_A           37 QPDKENVTLLHWAAINNRIDLVKYYI-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA-DPSLID-GEGCSCI  113 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             CCCCCCCCHHHHHHHhCCHHHHHHHH-HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCC-CCcccC-CCCCCHH
Confidence            34455555555555555555555555 333322      14555555555555555555555555 555555 5555555


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..                 ....+++.+|++.|++++..+.  
T Consensus       114 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-----------------~~~~~~~~~L~~~~~~~~~~~~--  174 (240)
T 3eu9_A          114 HLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-----------------THSVDPTRLLLTFNVSVNLGDK--  174 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-----------------CCSSTTHHHHHHTTCCTTCCCT--
T ss_pred             HHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-----------------CChHHHHHHHHhcCCCcchhhc--
Confidence            555555555555555555555555555555555555531                 3335566667777766666522  


Q ss_pred             CCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          405 LNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       405 ~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                              ..|.||||+|+...           ...++++++  ..++++|.+|..|+||||+|++.|.
T Consensus       175 --------~~g~t~L~~A~~~~-----------~~~~v~~Ll--~~g~~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          175 --------YHKNTALHWAVLAG-----------NTTVISLLL--EAGANVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             --------TTCCCHHHHHHHHT-----------CHHHHHHHH--HHTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             --------cCCCcHHHHHHHcC-----------CHHHHHHHH--HcCCCCCCcCCCCCCHHHHHHHcCc
Confidence                    26778999884322           223344444  3457899999999999999999884

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.9e-27  Score=217.43  Aligned_cols=130  Identities=24%  Similarity=0.256  Sum_probs=119.6

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCC-----CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLN-----LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d-----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.+++     .+|+||||+|+..|+.+++++|++.|+ +++.+| ..|+|||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L  105 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKD-FSGKTPL  105 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHH-HHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCC-TTSCCHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHH-HhccccccccccCccHHHHHHHcCCHHHHHHHHHCCC-CCCCCC-CCCCcHH
Confidence            346889999999999999999999999 44443     358999999999999999999999999 999998 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~~  163 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK------------------YGRSEIVKKLLELGADISAR  163 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH------------------HTCHHHHHHHHHTTCCTTCB
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCCCCc
Confidence            99999999999999999999999999999999999998                  68889999999998877655

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=6.4e-27  Score=205.81  Aligned_cols=124  Identities=23%  Similarity=0.284  Sum_probs=114.8

Q ss_pred             ccHHHHHHHhcCCHHHHHHHHhcCCCC----CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC
Q 010590          256 KIRRMRRALDSSDVELVKLMVMGEGLN----LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV  331 (506)
Q Consensus       256 g~t~L~~A~~~g~~~~v~~Ll~~~~~d----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~  331 (506)
                      ..||||.|+..|+.+++++|+ +.|.+    ..|.||||+|+..|+.+++++|++.|+ +++.++ ..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILM-ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDART-KVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHH-HHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCC-TTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCC-CCCCCHHHHHHHcC
Confidence            478999999999999999999 44543    358999999999999999999999999 999998 89999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          332 SPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       332 ~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      +.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|++++.+
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~~  129 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATE------------------HNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCcccc
Confidence            9999999999999999999999999999998                  78999999999988876644

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=8.3e-29  Score=237.50  Aligned_cols=187  Identities=16%  Similarity=0.104  Sum_probs=146.7

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHh---cCCCCCC---------ChHHHHHHH---HcCCHHHHHHHHHcCCCC------
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVM---GEGLNLD---------EALALHYAV---ENCSREVVKALLELGAAD------  311 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~d~~---------g~t~Lh~A~---~~g~~~~v~~Ll~~g~~~------  311 (506)
                      +..|+||||.|+..|+.+.++.|++   +.+.+++         |+||||+|+   ..|+.++|++|++.|+ +      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~-~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE-KTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH-HTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc-cccchHh
Confidence            5678999999999999996665552   3555443         999999999   6799999999999885 4      


Q ss_pred             -----CCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHHHHHHHHHcCC
Q 010590          312 -----VNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRT--------------VDGVTPLDILRTLTSDFLFKGA  372 (506)
Q Consensus       312 -----v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d--------------~~g~tpLh~A~~~~~~~l~~~~  372 (506)
                           ++..| ..|+||||+|+..|+.++|++|+++|++++.+|              ..|+||||+|+.          
T Consensus        81 ~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~----------  149 (260)
T 3jxi_A           81 FINSPFRDVY-YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC----------  149 (260)
T ss_dssp             HHTCCBCCSS-EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH----------
T ss_pred             hhcccccccc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH----------
Confidence                 44444 589999999999999999999999999999999              689999999998          


Q ss_pred             CCCCcccCCChHHHHHHHHH---hccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCC
Q 010590          373 VPGLTHIEPNKLRLCLELVQ---SAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSS  449 (506)
Q Consensus       373 ~~~~~~~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (506)
                              .++.+++++|++   .|++++.+           +..|.||||+|+.........  ......++++++  .
T Consensus       150 --------~g~~~~v~~Ll~~~~~ga~~~~~-----------d~~g~TpLh~A~~~~~~~~~~--~~~~~~~v~~Ll--~  206 (260)
T 3jxi_A          150 --------TNQPHIVHYLTENGHKQADLRRQ-----------DSRGNTVLHALVAIADNTREN--TKFVTKMYDLLL--I  206 (260)
T ss_dssp             --------TTCHHHHHHHHHCSSCCCCTTCC-----------CTTSCCHHHHHHHHCCSSHHH--HHHHHHHHHHHH--H
T ss_pred             --------cCCHHHHHHHHhccccCCCCccc-----------CCCCCcHHHHHHHhccCchhH--HHHHHHHHHHHH--H
Confidence                    789999999999   99999988           556779999985322100000  000012333444  2


Q ss_pred             cceee-------ccCCCCCCCcchhhhhcCCC
Q 010590          450 RLVYL-------NLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       450 ~~~~l-------n~~D~~G~T~LH~Aa~~gs~  474 (506)
                      .++++       |.+|..|+||||+|+..|..
T Consensus       207 ~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             hCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence            34556       78999999999999999954

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=4.1e-28  Score=244.63  Aligned_cols=180  Identities=19%  Similarity=0.207  Sum_probs=150.8

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      ....|..|.||||+||..|+.++|++|+ +.|+++     +|+||||+|+..|+.++|++|+++|+ +++.   ..|+||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~---~~g~t~   87 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE-VHSL---WHGQKP   87 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC-CCCC---BTTBCH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-Cccc---cCCCCH
Confidence            3456889999999999999999999999 667655     48999999999999999999999999 7764   479999


Q ss_pred             HHHHHHhCCHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCC
Q 010590          324 LHIAAEMVSPDMVAVLLDH----HADPNV-----------------RTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPN  382 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~----ga~~~~-----------------~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~  382 (506)
                      ||+|+..|+.+++++|+++    |++++.                 +|..|+||||+|+.                  .+
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~------------------~g  149 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG------------------LG  149 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHH------------------SC
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHH------------------cC
Confidence            9999999999999999999    888877                 89999999999998                  67


Q ss_pred             --hHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCC---CcceeeccC
Q 010590          383 --KLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDS---SRLVYLNLG  457 (506)
Q Consensus       383 --~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ln~~  457 (506)
                        +.+++++|++.|++++.+           +..|.||||+|+...           ...+++++++.   ....++|.+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~-----------d~~g~t~L~~A~~~g-----------~~~~v~~Ll~~g~~~~~~~~~~~  207 (364)
T 3ljn_A          150 PEYLEMIKILVQLGASPTAK-----------DKADETPLMRAMEFR-----------NREALDLMMDTVPSKSSLRLDYA  207 (364)
T ss_dssp             GGGHHHHHHHHHHTCCTTCC-----------CTTSCCHHHHHHHTT-----------CHHHHHHHHHHCSCSSSCCTTCC
T ss_pred             CchHHHHHHHHHcCCCCccc-----------CCCCCCHHHHHHHcC-----------CHHHHHHHHhccccccccccccc
Confidence              899999999999999988           456779999985432           22333333310   122349999


Q ss_pred             CCCCCCcchhhhhcCC
Q 010590          458 AGTGNSAHHHHHQMGS  473 (506)
Q Consensus       458 D~~G~T~LH~Aa~~gs  473 (506)
                      |..|+||||+|+..|+
T Consensus       208 ~~~g~t~L~~A~~~g~  223 (364)
T 3ljn_A          208 NKQGNSHLHWAILINW  223 (364)
T ss_dssp             CTTCCCTTHHHHTTTC
T ss_pred             CCCCCcHHHHHHHcCC
Confidence            9999999999999984

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=7.1e-27  Score=208.50  Aligned_cols=125  Identities=21%  Similarity=0.177  Sum_probs=115.0

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCC-----CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLN-----LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d-----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      .|.||||+|+..|+.++++.|+ +.+.+     .+|+||||+|+..|+.+++++|++.|+ +++..+ ..|+||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRI-EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA-DPQLLG-KGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHH-HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHH-HcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCcC-CCCCcHHHHHHH
Confidence            5789999999999999999999 44443     358999999999999999999999999 999998 899999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          330 MVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       330 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      .|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~~~~~~  131 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH------------------GNHVKCVKMLLESGADPTIE  131 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999999999999998                  78999999999988877654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.9e-26  Score=206.35  Aligned_cols=129  Identities=29%  Similarity=0.375  Sum_probs=117.1

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      .....+.+||++|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|+++|+ +++.+| ..|+||||
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~   85 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVD-HAGMTPLR   85 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccC-CCCCCHHH
Confidence            34567899999999999999999999 667654     58999999999999999999999999 999998 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|++++.+
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~~~~~~  142 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM------------------FGHLEIVEVLLKNGADVNAQ  142 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999999999999999998                  78999999999988876654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.7e-27  Score=224.42  Aligned_cols=182  Identities=16%  Similarity=0.110  Sum_probs=121.4

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCCCC----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGLNL----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      +..|.||||.|+..|+.++++.|+ +.|+++    .|.||||+|+..|+.++|++|++.|+ ++|.+| ..|+||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll-~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d-~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERI-AHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPN-DEGITALHNAV   78 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCC-TTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHh-ccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcC-CCCCCHHHHHH
Confidence            346899999999999999999999 777655    37999999999999999999999999 999999 89999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCC
Q 010590          329 EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEP  408 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~  408 (506)
                      ..|+.+++++|+++|+++|.+|..|+||||+|+.                  .++.+++++|+++|++++.++..|    
T Consensus        79 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~------------------~~~~~~v~~Ll~~ga~~~~~~~~~----  136 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS------------------CNNVQVCKFLVESGAAVFAMTYSD----  136 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCCCSSS----
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCcceecCCC----
Confidence            9999999999999999999999999999999998                  789999999999999999884332    


Q ss_pred             CCCCccccCCCCCCccCccCCCCCCCCCccccccccccCC-------CcceeeccCCCCCCCcchhhhhcCCC
Q 010590          409 SSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDS-------SRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       409 ~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                            +.||||+|....         .+....+++++..       .........|..|.||+|+|...|..
T Consensus       137 ------~~t~l~~a~~~~---------~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~  194 (239)
T 1ycs_B          137 ------MQTAADKCEEME---------EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC  194 (239)
T ss_dssp             ------CCCHHHHCCSSS---------TTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred             ------CcchHHHHHHhh---------hccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCE
Confidence                  238888872110         1111122222210       11123344588899999999999953

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=2.5e-26  Score=203.69  Aligned_cols=121  Identities=24%  Similarity=0.269  Sum_probs=112.4

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      +...||||+|+..|+.+++++|+ +.|+++     +|+||||+|+. |+.+++++|++.|+ +++.++ ..|+||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA-NPDLKD-RTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHH-hCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCC-CCCCCC-CCCCCHHHHHH
Confidence            45689999999999999999999 677654     58999999999 99999999999999 999998 89999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          329 EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      ..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK------------------EGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHHSCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------------------cCCHHHHHHHHHccCC
Confidence            9999999999999999999999999999999998                  7899999999999876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=5e-26  Score=202.58  Aligned_cols=140  Identities=27%  Similarity=0.306  Sum_probs=128.0

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+..|.||||.|+..|+.++++.|++..+.++     .|+||||+|+..|+.+++++|+++|+ +++.+| ..|+||||+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~   81 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-DVHAKD-KGGLVPLHN   81 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCC-CCCccC-CCCCCHHHH
Confidence            47789999999999999999999994344433     47899999999999999999999999 999999 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|++++.+      
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~~------  137 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA------------------KGKYEICKLLLQHGADPTKK------  137 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC------
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCCccc------
Confidence            999999999999999999999999999999999998                  78999999999999999988      


Q ss_pred             CCCCCCccccCCCCCC
Q 010590          407 EPSSSTATVIYPPPMS  422 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a  422 (506)
                           +..|.||||+|
T Consensus       138 -----~~~g~t~l~~a  148 (165)
T 3twr_A          138 -----NRDGNTPLDLV  148 (165)
T ss_dssp             -----CTTSCCTGGGS
T ss_pred             -----CCCCCChhHhH
Confidence                 55677999997

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=4.2e-28  Score=241.09  Aligned_cols=186  Identities=14%  Similarity=0.034  Sum_probs=140.1

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCC------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHh
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNL------DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM  330 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~  330 (506)
                      .+.+|+|+..+..+++++|+ +.|+|+      +|+||||+|+..|+.++|++||++|+ ++|.+| ..|+||||+|+..
T Consensus        98 ~~~~~~a~~~~~~~~~~~l~-~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga-d~n~~d-~~g~TpLh~A~~~  174 (327)
T 1sw6_A           98 QQQQHVSFDSLLQEVNDAFP-NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYGD-NMGESCLVKAVKS  174 (327)
T ss_dssp             ------CHHHHHHHHHHHCT-TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBCC-TTCCCHHHHHHHS
T ss_pred             cchhHHHHHhhHHHHHHHHH-hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcC-CCCCCHHHHHHHh
Confidence            35568889999999999999 666543      58999999999999999999999999 999999 8999999999999


Q ss_pred             CC---HHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHh-------------
Q 010590          331 VS---PDMVAVLLDHH-ADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQS-------------  393 (506)
Q Consensus       331 ~~---~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~-------------  393 (506)
                      |+   .++++.|++++ ++++.+|..|+||||+|+....              ..++.++++.|++.             
T Consensus       175 g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~--------------~~g~~~~v~~Ll~~~~~~~~~~~~~~i  240 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG--------------MTGCSAAAKYYLDILMGWIVKKQNRPI  240 (327)
T ss_dssp             SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHT--------------STTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred             cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcc--------------ccccHHHHHHHHHHHHHHHhcccchHH
Confidence            98   78888899886 8899999999999999996211              14677888888877             


Q ss_pred             -------ccCccccccCCCC--------------CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcce
Q 010590          394 -------AALVLSREEGILN--------------EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLV  452 (506)
Q Consensus       394 -------ga~~~~~~~~~~~--------------~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (506)
                             |++++.++.+|.+              .++..+..|.||||+|+...           ...++++++  ..++
T Consensus       241 ~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g-----------~~~~v~~Ll--~~Ga  307 (327)
T 1sw6_A          241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG-----------NISIVDALL--DYGA  307 (327)
T ss_dssp             EEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHC-----------CHHHHHHHH--HTTC
T ss_pred             HhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcC-----------CHHHHHHHH--HcCC
Confidence                   8889998888876              37788999999999985422           233445555  3468


Q ss_pred             eeccCCCCCCCcchhhhhcC
Q 010590          453 YLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       453 ~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      ++|.+|.+|+||||+|++.|
T Consensus       308 d~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          308 DPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CTTCCCTTSCCGGGGTCC--
T ss_pred             CCcccCCCCCCHHHHHHhcC
Confidence            99999999999999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=5.9e-27  Score=210.10  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=125.9

Q ss_pred             ccHHHHHHHhcCCHHHHHHHHhcCCC------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          256 KIRRMRRALDSSDVELVKLMVMGEGL------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       256 g~t~L~~A~~~g~~~~v~~Ll~~~~~------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      +.||||+|+..|+.++++.|+ +.+.      |.+|+||||+|+..|+.++|++|+++|+ +++.++ ..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHL-RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA-DPHILA-KERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHH-TTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCC-TTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHH-HcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-Cchhhc-ccCCCHHHHHHH
Confidence            467899999999999999999 4443      3468899999999999999999999999 999998 899999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCC
Q 010590          330 MVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPS  409 (506)
Q Consensus       330 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  409 (506)
                      .|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++.+         
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~~---------  131 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR------------------GNHVKCVEALLARGADLTTE---------  131 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC---------
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCCcccc---------
Confidence            999999999999999999999999999999987                  68889999999999988877         


Q ss_pred             CCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCc
Q 010590          410 SSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSA  464 (506)
Q Consensus       410 ~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~  464 (506)
                        +..|.||||+|+...           ....+++.+  .....++.++..|.||
T Consensus       132 --~~~g~t~l~~A~~~~-----------~~~~~~~L~--~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          132 --ADSGYTPMDLAVALG-----------YRKVQQVIE--NHILKLFQSNLVPADP  171 (172)
T ss_dssp             --CTTSCCHHHHHHHHT-----------CHHHHHHHH--HHHHHHSCC-------
T ss_pred             --CCCCCCHHHHHHHhC-----------cHHHHHHHH--HHHHHHhcccCCCCCC
Confidence              446678998884321           122233333  3345677777777776

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=2.9e-26  Score=222.20  Aligned_cols=130  Identities=19%  Similarity=0.201  Sum_probs=111.9

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-CC-----CChHHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCC
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-NL-----DEALALHYAV-----ENCSREVVKALLELGAADVNYPAGP  318 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-d~-----~g~t~Lh~A~-----~~g~~~~v~~Ll~~g~~~v~~~~~~  318 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.|+ ++     +|.||||+|+     ..++.+++++|++.|+ +++..+ .
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~-~~~~~~-~  181 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQQLL-DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGN-INAKAS-Q  181 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSC-TTCCCT-T
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHHHHH-HCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCC-CccccC-C
Confidence            346888999999999999999999999 5554 33     5899999999     6688999999999998 888887 7


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH-hccCc
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ-SAALV  397 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~-~ga~~  397 (506)
                      .|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.                  .++.+++++|++ .|+++
T Consensus       182 ~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~------------------~g~~~iv~~Ll~~~gad~  243 (276)
T 4hbd_A          182 AGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE------------------HGHKEIAGLLLAVPSCDI  243 (276)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------HTCHHHHHHHHTSTTCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH------------------CCCHHHHHHHHhcCCCCC
Confidence            89999999999999999999999999999999999999999997                  678899999988 66655


Q ss_pred             ccc
Q 010590          398 LSR  400 (506)
Q Consensus       398 ~~~  400 (506)
                      +.+
T Consensus       244 ~~~  246 (276)
T 4hbd_A          244 SLT  246 (276)
T ss_dssp             TCC
T ss_pred             cCc
Confidence            543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=7.3e-26  Score=199.43  Aligned_cols=122  Identities=25%  Similarity=0.256  Sum_probs=110.8

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      ++.||||+|+..|+.++++.|++..+.     |.+|+||||+ +..|+.+++++|+++|+ +++.+| ..|+||||+|+.
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~   77 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGA-SPNVQD-TSGTSPVHDAAR   77 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC-CCCCcC-CCCCCHHHHHHH
Confidence            367999999999999999999954433     3368999999 99999999999999999 999999 899999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcc
Q 010590          330 MVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVL  398 (506)
Q Consensus       330 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  398 (506)
                      .|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++. ++++
T Consensus        78 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~-~~~~  127 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ------------------EGHTAVVSFLAAE-SDLH  127 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH------------------HTCHHHHHHHHTT-SCTT
T ss_pred             cCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH------------------hChHHHHHHHHhc-cCCC
Confidence            999999999999999999999999999999998                  6889999999986 5444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=2.2e-25  Score=210.62  Aligned_cols=144  Identities=27%  Similarity=0.276  Sum_probs=128.2

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCC---------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGL---------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPA  319 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~  319 (506)
                      ....+..|.||||+|+..|+.+++++|++ .+.         +.+|.||||+|+..|+.+++++|++.|+ +++..+...
T Consensus        72 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~  149 (241)
T 1k1a_A           72 PMALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA-DIDAVDIKS  149 (241)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC-CcccccccC
Confidence            33457889999999999999999999993 322         3358999999999999999999999999 999887568


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccc
Q 010590          320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLS  399 (506)
Q Consensus       320 g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~  399 (506)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|++++.
T Consensus       150 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG------------------RGLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------------------HTCHHHHHHHHHTTCCTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------------------cCCHHHHHHHHhcCCCCCC
Confidence            9999999999999999999999999999999999999999997                  6889999999999999998


Q ss_pred             cccCCCCCCCCCCccccCCCCCCc
Q 010590          400 REEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       400 ~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      +           +..|.||||+|.
T Consensus       212 ~-----------~~~g~tpl~~A~  224 (241)
T 1k1a_A          212 K-----------NCHNDTPLMVAR  224 (241)
T ss_dssp             C-----------CTTSCCTTTTCS
T ss_pred             c-----------CCCCCCHHHHHH
Confidence            7           556779999984

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=3.9e-26  Score=206.31  Aligned_cols=139  Identities=24%  Similarity=0.214  Sum_probs=125.1

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCCC-----CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHH
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGLN-----LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA  328 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d-----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~  328 (506)
                      ..+.+|||.|+..|+.++++.|++..+.+     .+|+||||+|+..|+.+++++|++.|+ +++.++ ..|+||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMN-RGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCcC-CCCCCHHHHHH
Confidence            46789999999999999999999544543     358999999999999999999999999 999998 89999999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCC
Q 010590          329 EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEP  408 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~  408 (506)
                      ..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|++++.+        
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~------------------~~~~~~v~~Ll~~ga~~~~~--------  134 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF------------------WGQDQVAEDLVANGALVSIC--------  134 (179)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCSSBC--------
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCcchh--------
Confidence            9999999999999999999999999999999998                  78899999999999999988        


Q ss_pred             CCCCccccCCCCCCc
Q 010590          409 SSSTATVIYPPPMSC  423 (506)
Q Consensus       409 ~~~~~~~~tplh~a~  423 (506)
                         +..|.||||+|+
T Consensus       135 ---~~~g~tpl~~A~  146 (179)
T 3f6q_A          135 ---NKYGEMPVDKAK  146 (179)
T ss_dssp             ---CTTSCCGGGGSC
T ss_pred             ---ccCCCCcHHHHH
Confidence               556779999983

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=2.3e-26  Score=229.27  Aligned_cols=267  Identities=19%  Similarity=0.122  Sum_probs=181.8

Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhcCCChhhhhccchHHHHHHH
Q 010590          139 LDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKI  218 (506)
Q Consensus       139 ~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~~~~~~~l~~~L~~~~~~~l  218 (506)
                      ..|+.++..-.++-++.+.+....  +.....+...+.|..|...+..++.+.    +...+..+....           
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~----Ll~~ga~~~~~~-----------   89 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVEL----LLRHGADPVLRK-----------   89 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCC-----------
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHH----HHHcCCchhhhc-----------
Confidence            457888888888777666654310  000111122345666666665555443    444433322211           


Q ss_pred             HhhcccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC---------------
Q 010590          219 EDLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL---------------  283 (506)
Q Consensus       219 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~---------------  283 (506)
                        ....+++.........................|..|.||||+|+..|+.+++++|+ +.|+++               
T Consensus        90 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll-~~ga~~~~~~~~~~~~~~~~~  166 (337)
T 4g8k_A           90 --KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY-KRGANVNLRRKTKEDQERLRK  166 (337)
T ss_dssp             --TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCCCC-----CTT
T ss_pred             --cCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHH-HcCCCcchhhccccccccccC
Confidence              11122222211111111111111122233456889999999999999999999999 666544               


Q ss_pred             CChHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCChHHHHHHHhCC----HHHHHHHHHCCCCCCCCCCCCCcHHH
Q 010590          284 DEALALHYAVENCSREVVKALLE-LGAADVNYPAGPAGKTPLHIAAEMVS----PDMVAVLLDHHADPNVRTVDGVTPLD  358 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~v~~~~~~~g~tpLh~A~~~~~----~~~v~~Ll~~ga~~~~~d~~g~tpLh  358 (506)
                      .|.||||+|+..|+.++|++||+ .|+ ++|.+| ..|+||||+++..+.    ..++++|+++|+++|.+|..|+||||
T Consensus       167 ~g~T~L~~A~~~g~~~~v~~LL~~~ga-d~n~~d-~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~  244 (337)
T 4g8k_A          167 GGATALMDAAEKGHVEVLKILLDEMGA-DVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  244 (337)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHHSCC-CTTCCC-TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHhccCC-CcCccC-CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            37899999999999999999996 588 999999 899999999887554    46889999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHh-ccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCc
Q 010590          359 ILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQS-AALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSA  437 (506)
Q Consensus       359 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~  437 (506)
                      +|+.                  .+..++++.|++. |++++.+           +..|.||||+|+..+           
T Consensus       245 ~a~~------------------~~~~~~v~~Ll~~~~~~vn~~-----------d~~G~TpL~~A~~~g-----------  284 (337)
T 4g8k_A          245 LAVE------------------KKHLGLVQRLLEQEHIEINDT-----------DSDGKTALLLAVELK-----------  284 (337)
T ss_dssp             HHHH------------------TTCHHHHHHHHTSTTCCTTCB-----------CTTSCBHHHHHHHTT-----------
T ss_pred             HHHH------------------hhhhHHHHHHHHhcCCcccCc-----------CCCCCCHHHHHHHcC-----------
Confidence            9998                  7889999999985 7899887           556779999995422           


Q ss_pred             cccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          438 TINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       438 ~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                      ...+++++++  .++++|     +.||||+|+.+|+.
T Consensus       285 ~~~iv~~Ll~--~GAd~n-----~~~~L~~A~~~~~~  314 (337)
T 4g8k_A          285 LKKIAELLCK--RGASTD-----CGDLVMTARRNYDH  314 (337)
T ss_dssp             CHHHHHHHHT--TSCSST-----TCCHHHHHHHTTCH
T ss_pred             CHHHHHHHHH--CCCCCC-----CCCHHHHHHHcCCH
Confidence            2334455553  345555     55799999999853

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=3.9e-26  Score=214.85  Aligned_cols=149  Identities=23%  Similarity=0.201  Sum_probs=129.1

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCC----------CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLN----------LDEALALHYAVENCSREVVKALLELGAADVNYPAGP  318 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d----------~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~  318 (506)
                      ....|..|.||||+|+..|+.+++++|+ +.|++          .+|.||||+|+..|+.+++++|+++|+ +++..+ .
T Consensus        30 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~  106 (232)
T 2rfa_A           30 VHQRGAMGETALHIAALYDNLEAAMVLM-EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA-SVSARA-T  106 (232)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-C
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHH-HcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCC-CCCccc-C
Confidence            3446889999999999999999999999 44443          369999999999999999999999999 999886 4


Q ss_pred             -------------CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHH
Q 010590          319 -------------AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLR  385 (506)
Q Consensus       319 -------------~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~  385 (506)
                                   .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~------------------~~~~~  168 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL------------------QPNKT  168 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT------------------CSCHH
T ss_pred             CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------------cCChH
Confidence                         79999999999999999999999999999999999999999997                  67777


Q ss_pred             HH----HHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          386 LC----LELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       386 ~~----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      ++    ++|++.|++++....     .+..+..|.||||+|+
T Consensus       169 ~~~~i~~~Ll~~g~~~~~~~~-----~~~~~~~g~tpl~~A~  205 (232)
T 2rfa_A          169 FACQMYNLLLSYDGGDHLKSL-----ELVPNNQGLTPFKLAG  205 (232)
T ss_dssp             HHHHHHHHHHHTTCSCSSCCG-----GGCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhhh-----hccCCCCCCCHHHHHH
Confidence            66    999999998853211     1234678889999984

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=2.8e-25  Score=217.17  Aligned_cols=143  Identities=22%  Similarity=0.276  Sum_probs=127.4

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAG-------  317 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~-------  317 (506)
                      ...|..|.||||+||..|+.+++++|+ +.|+++     +|+||||+|+..|+.++|++|+++|+ +++..+.       
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~  144 (299)
T 1s70_B           67 NYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLD  144 (299)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHH
Confidence            345788999999999999999999999 677655     48999999999999999999999999 8887651       


Q ss_pred             ----------------------------------------------------CCCChHHHHHHHhCCHHHHHHHHHCCCC
Q 010590          318 ----------------------------------------------------PAGKTPLHIAAEMVSPDMVAVLLDHHAD  345 (506)
Q Consensus       318 ----------------------------------------------------~~g~tpLh~A~~~~~~~~v~~Ll~~ga~  345 (506)
                                                                          ..|.||||+|+..|+.+++++|+++|++
T Consensus       145 ~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d  224 (299)
T 1s70_B          145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (299)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             HHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence                                                                3477889999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          346 PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       346 ~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      ++.+|..|+||||+|+.                  .++.+++++|+++|++++.+           +..|.||||+|+
T Consensus       225 ~~~~d~~g~tpL~~A~~------------------~~~~~~v~~Ll~~gad~~~~-----------d~~g~t~l~~A~  273 (299)
T 1s70_B          225 VNIKDYDGWTPLHAAAH------------------WGKEEACRILVENLCDMEAV-----------NKVGQTAFDVAD  273 (299)
T ss_dssp             TTCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC-----------CTTSCCTTTSCC
T ss_pred             CCCcCCCCCcHHHHHHh------------------cCCHHHHHHHHHcCCCCCCc-----------CCCCCCHHHHHH
Confidence            99999999999999998                  78999999999999999988           556779999983

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=4e-26  Score=201.48  Aligned_cols=135  Identities=23%  Similarity=0.201  Sum_probs=113.0

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCh-HH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKT-PL  324 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~t-pL  324 (506)
                      ..+..|.||||+|+..|+.+++++|+ +.|+++     .|+||||+|+ .|+.+++++|+++|+ +++.+| ..|+| ||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~-~~~~~d-~~g~ttpL   82 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA-EPNCAD-PATLTRPV   82 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-CCCCCC-TTTCCCHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC-CCCCcC-CCCCcHHH
Confidence            34678999999999999999999999 667655     5899999996 999999999999999 999999 89999 99


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|++++.++..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------------------~~~~~~v~~Ll~~ga~~~~~~~~g  144 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE------------------LGHRDVARYLRAAAGGTRGSNHAR  144 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH------------------HTCHHHHHHHSSCC----------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH------------------hCHHHHHHHHHHcCCCCCccCcCc
Confidence            99999999999999999999999999999999999998                  688999999999999999997766


Q ss_pred             CCC
Q 010590          405 LNE  407 (506)
Q Consensus       405 ~~~  407 (506)
                      .++
T Consensus       145 ~t~  147 (156)
T 1bi7_B          145 IDA  147 (156)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            644

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=9.3e-26  Score=194.33  Aligned_cols=125  Identities=22%  Similarity=0.183  Sum_probs=117.2

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CChH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPA-GKTP  323 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~-g~tp  323 (506)
                      ...+..|.||||+|+..|+.+++++|+ +.|+++     .|+||||+|+. |+.+++++|+++|+ +++.+| .. |+||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-~~~~~~-~~~g~t~   81 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLL-EAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA-EPNCAD-PATLTRP   81 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC-CSSCCB-TTTTBCH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHH-HcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC-CCCCcC-CCCCCCH
Confidence            456789999999999999999999999 666654     58999999999 99999999999999 999999 78 9999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------------------~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE------------------QGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHH------------------HTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999998                  6889999999999986

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.92  E-value=8.7e-26  Score=202.89  Aligned_cols=148  Identities=28%  Similarity=0.383  Sum_probs=134.7

Q ss_pred             hhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCce
Q 010590            6 SLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGV   85 (506)
Q Consensus         6 ~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~   85 (506)
                      .+++.+.+.++.+++++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+                    ...+
T Consensus        16 ~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~--------------------~~~~   75 (172)
T 3htm_A           16 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES--------------------KKNR   75 (172)
T ss_dssp             CCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGG--------------------GTTE
T ss_pred             CCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCcccc--------------------CCCe
Confidence            35667899999999999999999999999999999999999999999999998886                    3578


Q ss_pred             EEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 010590           86 IPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMV  165 (506)
Q Consensus        86 i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l  165 (506)
                      |.|+++++++|+.+|+|+|||++.++...                       +.+++.+|++|+++.++..|++.+... 
T Consensus        76 i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~-----------------------~~~ll~~A~~~~~~~l~~~c~~~l~~~-  131 (172)
T 3htm_A           76 VEINDVEPEVFKEMMCFIYTGKAPNLDKM-----------------------ADDLLAAADKYALERLKVMCEDALCSN-  131 (172)
T ss_dssp             EEECSSCHHHHHHHHHHHHHSCCTTGGGT-----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred             EEecCCCHHHHHHHHHHHhCCCCCCcHHH-----------------------HHHHHHHHHHhCcHHHHHHHHHHHHHh-
Confidence            99999999999999999999998765433                       678999999999999999999998744 


Q ss_pred             hhhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc
Q 010590          166 EKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       166 ~~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~  199 (506)
                        ...++++.++..|..+++..|...|+.|+..+
T Consensus       132 --l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~  163 (172)
T 3htm_A          132 --LSVENAAEILILADLHSADQLKTQAVDFINYH  163 (172)
T ss_dssp             --CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence              47789999999999999999999999999875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=3.1e-26  Score=219.13  Aligned_cols=143  Identities=24%  Similarity=0.212  Sum_probs=126.7

Q ss_pred             CCccccHHHHHHHhc---CCHHHHHHHHhcCCCC----------------CCChHHHHHHHHcCCHHHHHHHHHcCCCCC
Q 010590          252 LEDQKIRRMRRALDS---SDVELVKLMVMGEGLN----------------LDEALALHYAVENCSREVVKALLELGAADV  312 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~d----------------~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v  312 (506)
                      .|..|.||||+|+..   |+.+++++|+ +.|++                .+|.||||+|+..|+.++|++|+++|+ ++
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~  116 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLL-QIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA-DV  116 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHH-HHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CT
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHH-hcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCC-CC
Confidence            588999999999999   9999999999 33322                459999999999999999999999999 99


Q ss_pred             CCCCCCC-------------CChHHHHHHHhCCHHHHHHHHH---CCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 010590          313 NYPAGPA-------------GKTPLHIAAEMVSPDMVAVLLD---HHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGL  376 (506)
Q Consensus       313 ~~~~~~~-------------g~tpLh~A~~~~~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~  376 (506)
                      +.++ ..             |+||||+|+..|+.+++++|++   +|+++|.+|..|+||||+|+...            
T Consensus       117 ~~~~-~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~------------  183 (256)
T 2etb_A          117 HLRA-CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA------------  183 (256)
T ss_dssp             TCCC-CSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHC------------
T ss_pred             Cccc-ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcc------------
Confidence            9998 55             9999999999999999999999   99999999999999999999621            


Q ss_pred             cccCCChHH-------HHHHHHHhccCc-------cccccCCCCCCCCCCccccCCCCCCcc
Q 010590          377 THIEPNKLR-------LCLELVQSAALV-------LSREEGILNEPSSSTATVIYPPPMSCC  424 (506)
Q Consensus       377 ~~~~~~~~~-------~~~~Ll~~ga~~-------~~~~~~~~~~~~~~~~~~~tplh~a~~  424 (506)
                          .++.+       ++++|++.|+++       +.+           +..|.||||+|+.
T Consensus       184 ----~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~-----------d~~g~tpL~~A~~  230 (256)
T 2etb_A          184 ----DNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-----------NHQGLTPLKLAAK  230 (256)
T ss_dssp             ----CSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC-----------CTTSCCHHHHHHH
T ss_pred             ----cCCchhhHHHHHHHHHHHHcCCCccccccccccc-----------CCCCCCHHHHHHH
Confidence                35555       999999999999       555           6678899999843

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1.2e-25  Score=213.00  Aligned_cols=189  Identities=17%  Similarity=0.125  Sum_probs=148.2

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.++|++|+++|+ ++|.+| ..|+||||+
T Consensus        33 ~~~~~~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d-~~g~tpL~~  109 (239)
T 1ycs_B           33 FNPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAAD-SDGWTPLHC  109 (239)
T ss_dssp             ----CHHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCC-TTCCCHHHH
T ss_pred             cCchhhHHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccC-CCCCCHHHH
Confidence            3567899999999999999999999 666654     58999999999999999999999999 999999 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCC
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGV-TPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGIL  405 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~  405 (506)
                      |+..|+.+++++|+++|++++.+|..|. ||||+|..                ...++.+++++|++.|++++..+..+.
T Consensus       110 A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~----------------~~~g~~~~~~~Ll~~~a~~~~~~~~~~  173 (239)
T 1ycs_B          110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE----------------MEEGYTQCSQFLYGVQEKMGIMNKGVI  173 (239)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS----------------SSTTCCCHHHHHHHHHHHTTTTGGGEE
T ss_pred             HHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHH----------------hhhccHHHHHHHHHhhhcccccccceE
Confidence            9999999999999999999999998887 99999831                126788999999999999999877655


Q ss_pred             CCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCC--cceeeccCCCCCCCcchhhhhcC
Q 010590          406 NEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSS--RLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       406 ~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      .+.  .+..+.++++++.....           +..+....+..  .-......++.|.+|.++....+
T Consensus       174 ~al--~d~~~~~~~eLa~~~G~-----------~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~  229 (239)
T 1ycs_B          174 YAL--WDYEPQNDDELPMKEGD-----------CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP  229 (239)
T ss_dssp             EES--SCBCCSSTTBCCBCSSC-----------EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             EEE--eccCCCCCCcccccCCC-----------EEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence            443  36778888888722111           11111111100  11234456788999999987764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=2.5e-25  Score=207.95  Aligned_cols=171  Identities=18%  Similarity=0.147  Sum_probs=140.7

Q ss_pred             cccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcC
Q 010590          222 RHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENC  296 (506)
Q Consensus       222 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g  296 (506)
                      .+.|||.........................+..|.||||+|+..|+.+++++|++....     +.+|.||||+|+..|
T Consensus        24 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  103 (223)
T 2f8y_A           24 TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  103 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Confidence            455666555443332222222222233445678999999999999999999999943322     346899999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 010590          297 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGL  376 (506)
Q Consensus       297 ~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~  376 (506)
                      +.+++++|+++|+ +++.++ ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.              
T Consensus       104 ~~~~~~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--------------  167 (223)
T 2f8y_A          104 VEGMLEDLINSHA-DVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR--------------  167 (223)
T ss_dssp             CHHHHHHHHHTTC-CTTCBC-TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH--------------
T ss_pred             cHHHHHHHHHcCC-CCcCcC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHH--------------
Confidence            9999999999999 999999 899999999999999999999999999999999999999999998              


Q ss_pred             cccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          377 THIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       377 ~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                          .++.+++++|+++|++++.+           +..|.||||+|+
T Consensus       168 ----~~~~~~v~~Ll~~ga~~~~~-----------~~~g~t~l~~A~  199 (223)
T 2f8y_A          168 ----EGSYETAKVLLDHFANRDIT-----------DHMDRLPRDIAQ  199 (223)
T ss_dssp             ----HTCHHHHHHHHHTTCCTTCC-----------CTTCCCHHHHHH
T ss_pred             ----cCCHHHHHHHHHcCCCCccc-----------cccCCCHHHHHH
Confidence                68899999999999999887           455679999874

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=3e-25  Score=203.94  Aligned_cols=147  Identities=18%  Similarity=0.152  Sum_probs=127.7

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCChH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLE-LGAADVNYPAGPAGKTP  323 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~v~~~~~~~g~tp  323 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.|+++     .|.||||+|+..|+.+++++|++ .++ +++.++ ..|+||
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~-~~g~t~  109 (201)
T 3hra_A           33 DEVDTEGNTPLNIAVHNNDIEIAKALI-DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP-DLNKHN-RYGGNA  109 (201)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-CTTCCC-TTSCCS
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc-cccccc-CCCCcH
Confidence            345788999999999999999999999 677765     48999999999999999999995 556 999998 899999


Q ss_pred             HHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccccc
Q 010590          324 LHIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREE  402 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  402 (506)
                      ||+|+..|+.+++++|+++| ++++.+|..|+||||+|+....             ...++.+++++|++.|++++.+  
T Consensus       110 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~-------------~~~~~~~~v~~Ll~~ga~~~~~--  174 (201)
T 3hra_A          110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE-------------GNQLYQDIVKLLMENGADQSIK--  174 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC-------------CSHHHHHHHHHHHHTTCCTTCC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc-------------chhhHHHHHHHHHHCCCCCCcc--
Confidence            99999999999999999998 9999999999999999996200             0011389999999999999988  


Q ss_pred             CCCCCCCCCCccccCCCCCCc
Q 010590          403 GILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       403 ~~~~~~~~~~~~~~tplh~a~  423 (506)
                               +..|.||||+|+
T Consensus       175 ---------~~~g~t~l~~A~  186 (201)
T 3hra_A          175 ---------DNSGRTAMDYAN  186 (201)
T ss_dssp             ---------CTTSCCHHHHHH
T ss_pred             ---------CCCCCCHHHHHH
Confidence                     456679999884

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=3.1e-26  Score=221.31  Aligned_cols=148  Identities=22%  Similarity=0.235  Sum_probs=127.6

Q ss_pred             cCCccccHHHHHHHhc---CCHHHHHHHHhcCC----------------CCCCChHHHHHHHHcCCHHHHHHHHHcCCCC
Q 010590          251 DLEDQKIRRMRRALDS---SDVELVKLMVMGEG----------------LNLDEALALHYAVENCSREVVKALLELGAAD  311 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~----------------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~  311 (506)
                      ..|..|.||||+|+..   |+.+++++|+ +.|                .|..|+||||+|+..|+.++|++|+++|+ +
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll-~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga-~  126 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLL-DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA-D  126 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHH-HHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-C
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHH-HhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCC-C
Confidence            3578999999999987   9999999999 333                23479999999999999999999999999 9


Q ss_pred             CCCCCCC--------------CCChHHHHHHHhCCHHHHHHHHH---CCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCC
Q 010590          312 VNYPAGP--------------AGKTPLHIAAEMVSPDMVAVLLD---HHADPNVRTVDGVTPLDILRTLTSDFLFKGAVP  374 (506)
Q Consensus       312 v~~~~~~--------------~g~tpLh~A~~~~~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~  374 (506)
                      ++.++ .              .|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..           
T Consensus       127 ~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~-----------  194 (273)
T 2pnn_A          127 VQAAA-NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV-----------  194 (273)
T ss_dssp             TTCCB-CSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH-----------
T ss_pred             cCccc-cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc-----------
Confidence            99998 5              79999999999999999999999   9999999999999999999972           


Q ss_pred             CCcccCCCh---------HHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          375 GLTHIEPNK---------LRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       375 ~~~~~~~~~---------~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                             ++         .+++++|++.|++++....    .++..+..|.||||+|+
T Consensus       195 -------~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~----~~~~~d~~g~TpL~~A~  241 (273)
T 2pnn_A          195 -------ADNTVDNTKFVTSMYNEILILGAKLHPTLK----LEEITNRKGLTPLALAA  241 (273)
T ss_dssp             -------CCSCHHHHHHHHHHHHHHHHHHHHHCTTCC----GGGCCCTTSCCHHHHHH
T ss_pred             -------cCcchhHHHHHHHHHHHHHHhhhhcccccc----cccccCCCCCCHHHHHH
Confidence                   22         6889999999999985210    11223677889999984

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.92  E-value=2.4e-25  Score=213.17  Aligned_cols=171  Identities=16%  Similarity=0.208  Sum_probs=136.6

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.++.+|.++.+|||+|+|+|++|+|||+|||++|+||++||.+++.+...                  ...
T Consensus        12 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~------------------~~~   73 (256)
T 3hve_A           12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDG------------------STY   73 (256)
T ss_dssp             TTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------------------------C
T ss_pred             hHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccC------------------CCC
Confidence            68999999999999999999999999999999999999999999999999998873210                  357


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANM  164 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~  164 (506)
                      +|.++++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|.+.+...
T Consensus        74 ~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~-----------------------v~~ll~~A~~l~i~~l~~~c~~~L~~~  130 (256)
T 3hve_A           74 KIELEGISVMVMREILDYIFSGQIRLNEDT-----------------------IQDVVQAADLLLLTDLKTLCCEFLEGC  130 (256)
T ss_dssp             EEECSSCCHHHHHHHHHHHHHSCCCCC-CC-----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             eEEeCCCCHHHHHHHHhhccCCCCcccHhH-----------------------HHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence            899999999999999999999999887654                       678999999999999999999998854


Q ss_pred             HhhhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc--CCChhhhhccchHHHHHHHH
Q 010590          165 VEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS--GLPPEVLAKHLPIEVVAKIE  219 (506)
Q Consensus       165 l~~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~--~~~~~~l~~~L~~~~~~~l~  219 (506)
                      +   ..+|++.++..|..+++..|.+.|..|+..+  ......-...++.+.+..+.
T Consensus       131 l---~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL  184 (256)
T 3hve_A          131 I---AAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVI  184 (256)
T ss_dssp             C---CSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHH
T ss_pred             C---CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHH
Confidence            4   6789999999999999999999999999766  11111223355555555443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.92  E-value=4.8e-25  Score=197.60  Aligned_cols=136  Identities=20%  Similarity=0.194  Sum_probs=122.5

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      ....|..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|+++|+ +++.+| ..|+||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~  105 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGYTDIVGLLLERDV-DINIYD-WNGGTP  105 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CTTCCC-TTSCCH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCCC-CCCCCH
Confidence            3445789999999999999999999999 556544     58999999999999999999999999 999999 899999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccC
Q 010590          324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEG  403 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~  403 (506)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|+++..++..
T Consensus       106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------------------~~~~~~~~~L~~~~~~~~~~~~~  167 (172)
T 3v30_A          106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA------------------LGYRKVQQVIENHILKLFQSNLV  167 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------HTCHHHHHHHHHHHHHHSCC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH------------------hCcHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999998                  68999999999999999888554


Q ss_pred             CC
Q 010590          404 IL  405 (506)
Q Consensus       404 ~~  405 (506)
                      |.
T Consensus       168 ~~  169 (172)
T 3v30_A          168 PA  169 (172)
T ss_dssp             --
T ss_pred             CC
Confidence            44

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=2.4e-24  Score=185.40  Aligned_cols=123  Identities=28%  Similarity=0.307  Sum_probs=113.0

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      .....+.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +++.+| ..|+||||
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d-~~g~t~L~   85 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVNAVD-AIGFTPLH   85 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTCCCHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcCC-CCCCCHHH
Confidence            44577899999999999999999999 667654     48999999999999999999999999 999999 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA  394 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g  394 (506)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~------------------~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG------------------NGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHH------------------CCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998                  78899999999876

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.92  E-value=4.4e-25  Score=214.05  Aligned_cols=149  Identities=18%  Similarity=0.268  Sum_probs=131.6

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEEC---CeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCC
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVE---GRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASR   81 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~---~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~   81 (506)
                      ++|++.+++.++.+|.++.+|||+|+|+   |++|+|||+|||++|+||++||+++|+|+                    
T Consensus        13 ~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~--------------------   72 (279)
T 3i3n_A           13 SSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES--------------------   72 (279)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-------------------------
T ss_pred             HhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccc--------------------
Confidence            6899999999999999999999999998   99999999999999999999999999887                    


Q ss_pred             CCceEEcC------CCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHH
Q 010590           82 PTGVIPVN------SVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLAL  155 (506)
Q Consensus        82 ~~~~i~l~------~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~  155 (506)
                      ...+|+|+      ++++++|+.+|+|+|||++.++...                       +.+++.+|++|+++.++.
T Consensus        73 ~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~-----------------------v~~ll~~A~~l~i~~L~~  129 (279)
T 3i3n_A           73 RSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGS-----------------------VHEVLELADRFLLIRLKE  129 (279)
T ss_dssp             ---EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTT-----------------------HHHHHHHHHHTTCHHHHH
T ss_pred             cCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHH-----------------------HHHHHHHHHHHCcHHHHH
Confidence            35789998      8999999999999999999987654                       678999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc
Q 010590          156 LTQKQLANMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       156 l~~~~l~~~l~~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~  199 (506)
                      .|.+.+...+   ..+|++.++..|..+++..|...|..++..+
T Consensus       130 ~c~~~L~~~l---~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~  170 (279)
T 3i3n_A          130 FCGEFLKKKL---HLSNCVAIHSLAHMYTLSQLALKAADMIRRN  170 (279)
T ss_dssp             HHHHHHHHHC---CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcC---CcchHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            9999998654   6789999999999999999999999999866

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.92  E-value=7.2e-25  Score=184.58  Aligned_cols=114  Identities=27%  Similarity=0.359  Sum_probs=101.8

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.++.+|+++.+|||+|+++|++|+|||+|||++|+||++||.++|.|+                    ...
T Consensus         6 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~--------------------~~~   65 (120)
T 2if5_A            6 PDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD--------------------QQN   65 (120)
T ss_dssp             TTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-------------------------CCS
T ss_pred             cchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcccc--------------------CCc
Confidence            789999999999999999999999999999999999999999999999999999886                    357


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQL  161 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l  161 (506)
                      +|.++++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+
T Consensus        66 ~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~-----------------------~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           66 VYEIDFVSAEALTALMDFAYTATLTVSTAN-----------------------VGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             EEECCSSCHHHHHHHHHHHHHSCCCCCGGG-----------------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eEEeCCCCHHHHHHHHHHHcCCCCccCHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHh
Confidence            899999999999999999999999876443                       678999999999999999998875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.8e-25  Score=203.30  Aligned_cols=130  Identities=15%  Similarity=0.096  Sum_probs=101.5

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCC----CCChHHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLN----LDEALALHYAVENCSR----EVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d----~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+.++|+.|+..|+.+.++.++ +.+.+    ..|+||||+|+..|+.    +++++||++|+ ++|.+| ..|+||||+
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~-~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga-dvn~~d-~~g~TpLh~   81 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELF-EKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA-DIKSRT-KEGTTLFFP   81 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHH-HHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC-CSSCCC-TTCCCTHHH
T ss_pred             ccccHHHHHHHcCCHHHHHHHH-hcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC-CCCCCC-CCCCcHHHH
Confidence            3567899999999999988888 44443    2488999999988875    48899999999 999998 899999999


Q ss_pred             HHHhCC------HHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH-hccCcc
Q 010590          327 AAEMVS------PDMVAVLLDHHADPNVRTVDGV-TPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ-SAALVL  398 (506)
Q Consensus       327 A~~~~~------~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~  398 (506)
                      |+..|+      .+++++|+++|||+|.+|..|+ ||||+|+...             ....+..+++++|++ .|+|++
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~-------------~~~~~~~~iv~~Ll~~~gad~~  148 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF-------------VDENEMIPLYKLIFSQSGLQLL  148 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCC-------------SCHHHHHHHHHHHHTSTTCCTT
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcC-------------CChhhHHHHHHHHHHhcCCCCc
Confidence            998886      5788999999999999999999 9999887410             000123467788888 777776


Q ss_pred             cc
Q 010590          399 SR  400 (506)
Q Consensus       399 ~~  400 (506)
                      .+
T Consensus       149 ~~  150 (186)
T 3t8k_A          149 IK  150 (186)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.2e-24  Score=180.40  Aligned_cols=121  Identities=35%  Similarity=0.483  Sum_probs=114.2

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      +|.||||+|+..|+.+++++|+ +.|+++     .|.||||+|+..|+.+++++|++.|+ +++.++ ..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~-~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKD-KNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC-CCcccC-CCCCcHHHHHHH
Confidence            4899999999999999999999 455543     58999999999999999999999999 999998 899999999999


Q ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          330 MVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       330 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      .|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++|||
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~------------------~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR------------------NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHH------------------cCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999998                  7899999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=2.2e-24  Score=191.07  Aligned_cols=125  Identities=22%  Similarity=0.230  Sum_probs=115.3

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...+..|.||||+|+. |+.+++++|+ +.|+++     .|+||||+|+..|+.+++++|+++|+ +++.+| ..|+|||
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L  107 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-DVNIED-NEGNLPL  107 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcC-CCCCCHH
Confidence            3457889999999999 9999999999 667655     58999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          325 HIAAEMVSPDMVAVLLDHHAD-PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      |+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.                  .++.+++++|+++|||
T Consensus       108 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~------------------~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL------------------YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTC--
T ss_pred             HHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH------------------cCCHHHHHHHHHhCCC
Confidence            999999999999999999998 69999999999999998                  7899999999999986

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.91  E-value=2e-25  Score=217.29  Aligned_cols=159  Identities=14%  Similarity=0.135  Sum_probs=135.1

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-ChHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAG-KTPLHIAA  328 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g-~tpLh~A~  328 (506)
                      .|.||||+|+..|+.+++++|+ +.|+++     .|+||||+|+..|+.+++++|+++|+ +++.++ ..| .||||+|+
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~-~~g~~t~L~~A~  137 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILL-FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-RLMFYG-KTGWKTSFYHAV  137 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG-GGGGCS-SSGGGSHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCCccC-CCCCCCHHHHHH
Confidence            4899999999999999999999 677765     48999999999999999999999999 999998 788 79999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCC
Q 010590          329 EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEP  408 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~  408 (506)
                      ..|+.+++++|+++|+++... ..|+||||+|+.                  .++.+++++|+++|++++.+        
T Consensus       138 ~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~------------------~g~~~~v~~Ll~~gad~n~~--------  190 (285)
T 3kea_A          138 MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIK------------------NGHVDMMILLLDYMTSTNTN--------  190 (285)
T ss_dssp             HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHH------------------TTCHHHHHHHHHHHHHTCTT--------
T ss_pred             HcCCHHHHHHHHhCCCccccc-cCCccHHHHHHH------------------cChHHHHHHHHHcCCCCCcc--------
Confidence            999999999999999887332 289999999998                  78999999999999999988        


Q ss_pred             CCCCccccCC-CCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCC
Q 010590          409 SSSTATVIYP-PPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAG  459 (506)
Q Consensus       409 ~~~~~~~~tp-lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~  459 (506)
                         +..|.|| ||+|+...           ...++++++  ..++++|.+|.
T Consensus       191 ---~~~g~t~~L~~A~~~~-----------~~~~v~~Ll--~~gad~~~~~~  226 (285)
T 3kea_A          191 ---NSLLFIPDIKLAIDNK-----------DIEMLQALF--KYDINIYSANL  226 (285)
T ss_dssp             ---CCCBCCTTHHHHHHHT-----------CHHHHHHHT--TSCBCSTTTTG
T ss_pred             ---cCCCCChHHHHHHHcC-----------CHHHHHHHH--HcCCCCCCCCh
Confidence               4466687 99984322           233445555  34578888883

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=3.8e-24  Score=195.39  Aligned_cols=154  Identities=19%  Similarity=0.220  Sum_probs=128.6

Q ss_pred             hhcccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHH
Q 010590          220 DLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVE  294 (506)
Q Consensus       220 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~  294 (506)
                      +..+.|||.........................+..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+.
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~  110 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSII  110 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHH
Confidence            445666666555443333222222222234456788999999999999999999999 556544     58999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCC
Q 010590          295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVP  374 (506)
Q Consensus       295 ~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~  374 (506)
                      .|+.+++++|+++|+ +++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.            
T Consensus       111 ~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------------  176 (192)
T 2rfm_A          111 FGYSEMSYFLLEHGA-NVNDRN-LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI------------  176 (192)
T ss_dssp             HTCHHHHHHHHHTTC-CSSCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------------
T ss_pred             cCCHHHHHHHHHCCC-CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH------------
Confidence            999999999999999 999999 899999999999999999999999999999999999999999998            


Q ss_pred             CCcccCCChHHHHHHHHHhc
Q 010590          375 GLTHIEPNKLRLCLELVQSA  394 (506)
Q Consensus       375 ~~~~~~~~~~~~~~~Ll~~g  394 (506)
                            .++.+++++|++.|
T Consensus       177 ------~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          177 ------FGRQEVIKIFTEVR  190 (192)
T ss_dssp             ------TTCHHHHHHHHHHH
T ss_pred             ------hCcHHHHHHHHhcc
Confidence                  78999999999876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=1.7e-25  Score=214.46  Aligned_cols=158  Identities=22%  Similarity=0.224  Sum_probs=125.8

Q ss_pred             CCccccHHHHHHH---hcCCHHHHHHHHhcCCC----------------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCC
Q 010590          252 LEDQKIRRMRRAL---DSSDVELVKLMVMGEGL----------------NLDEALALHYAVENCSREVVKALLELGAADV  312 (506)
Q Consensus       252 ~~~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~----------------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v  312 (506)
                      .+..|.||||+|+   ..|+.+++++|+ +.|+                |.+|+||||+|+..|+.++|++|+++|+ ++
T Consensus        42 ~~~~g~t~L~~A~~~~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~  119 (260)
T 3jxi_A           42 EPSTGKTCLPKALLNLSAGRNDTIPILL-DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA-DV  119 (260)
T ss_dssp             CTTTCCCHHHHHHTSCBTTBCTHHHHHH-HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTC-CT
T ss_pred             ccCCCCcHHHHHHHHhhcCCHHHHHHHH-HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCC-Cc
Confidence            4577999999999   779999999999 3321                2268999999999999999999999999 99


Q ss_pred             CCCCC-------------CCCChHHHHHHHhCCHHHHHHHHH---CCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCC
Q 010590          313 NYPAG-------------PAGKTPLHIAAEMVSPDMVAVLLD---HHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGL  376 (506)
Q Consensus       313 ~~~~~-------------~~g~tpLh~A~~~~~~~~v~~Ll~---~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~  376 (506)
                      +.++.             ..|+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.....         .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~---------~  190 (260)
T 3jxi_A          120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN---------T  190 (260)
T ss_dssp             TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCS---------S
T ss_pred             CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccC---------c
Confidence            99872             379999999999999999999999   9999999999999999999962100         0


Q ss_pred             cccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCcc
Q 010590          377 THIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCC  424 (506)
Q Consensus       377 ~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~  424 (506)
                      ........+++++|+++|++++...    ...+..+..|.||||+|+.
T Consensus       191 ~~~~~~~~~~v~~Ll~~ga~~~~~~----~~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          191 RENTKFVTKMYDLLLIKCAKLFPDT----NLEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTC----CGGGCCCTTSCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCccccccc----chhhcccCCCCCHHHHHHH
Confidence            0000001589999999999995321    0112246788899999853

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=3.1e-24  Score=191.31  Aligned_cols=131  Identities=22%  Similarity=0.280  Sum_probs=120.7

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChH
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tp  323 (506)
                      ....|..|.||||+|+..|+.+++++|+ +.|+++     .|.||||+|+..|+.+++++|+++|+ +++.+| ..|+||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~  105 (167)
T 3v31_A           29 INHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV-DVNEYD-WNGGTP  105 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCC-TTSCCH
T ss_pred             cCCCCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCcCC-CCCCCH
Confidence            3456789999999999999999999999 567654     48899999999999999999999999 999998 899999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++++++...
T Consensus       106 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------------------~~~~~~~~~L~~~~~~~~~~  164 (167)
T 3v31_A          106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA------------------LGYRSVQQVIESHLLKLLQN  164 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------HTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------------------cCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998                  68899999999998876544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=4.6e-25  Score=219.17  Aligned_cols=157  Identities=15%  Similarity=0.098  Sum_probs=115.7

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCC---HHHHHHHHHcC-CCCCCCCCCCCCCh
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCS---REVVKALLELG-AADVNYPAGPAGKT  322 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~---~~~v~~Ll~~g-~~~v~~~~~~~g~t  322 (506)
                      .|..|.||||+||..|+.++|++|| +.|+|+     +|+||||+|+..|+   .++++.|++.+ + +++.+| ..|+|
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~-~~~~~d-~~g~t  203 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-CLILED-SMNRT  203 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-GGGEEC-TTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc-cccCCC-CCCCC
Confidence            5889999999999999999999999 777766     48999999999998   78889999988 6 899999 89999


Q ss_pred             HHHHHHH----hCCHHHHHHHHHC--------------------CCCCCCCCCCCCcHHHHHHHHHHHHHHc--------
Q 010590          323 PLHIAAE----MVSPDMVAVLLDH--------------------HADPNVRTVDGVTPLDILRTLTSDFLFK--------  370 (506)
Q Consensus       323 pLh~A~~----~~~~~~v~~Ll~~--------------------ga~~~~~d~~g~tpLh~A~~~~~~~l~~--------  370 (506)
                      |||+|+.    .|+.+++++|++.                    |++++.+|..|+||||+|+. ...++..        
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-~~~Ll~~~~n~~d~~  282 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-LKWIIANMLNAQDSN  282 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-HHHHHHHTTTCCCTT
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-HHHHHHhCCCCCCCC
Confidence            9999999    8999999999987                    55544444444444444442 1111111        


Q ss_pred             CCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          371 GAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      |..|...+...++.+++++|+++|+|++.+           +..|.||||+|+
T Consensus       283 G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~-----------d~~G~TpL~~A~  324 (327)
T 1sw6_A          283 GDTCLNIAARLGNISIVDALLDYGADPFIA-----------NKSGLRPVDFGA  324 (327)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCC-----------CTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCccc-----------CCCCCCHHHHHH
Confidence            111111122268899999999999999988           556779999984

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.91  E-value=4.4e-24  Score=181.60  Aligned_cols=114  Identities=25%  Similarity=0.323  Sum_probs=105.8

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      .+|++.+++.|+.+|+++.+|||+|+++|++|+|||+|||++|+||++||.+++.|.                     ..
T Consensus        10 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~---------------------~~   68 (127)
T 1r29_A           10 TRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN---------------------LS   68 (127)
T ss_dssp             TTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTT---------------------CS
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccCC---------------------CC
Confidence            689999999999999999999999999999999999999999999999999988772                     47


Q ss_pred             eEEc-CCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590           85 VIPV-NSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus        85 ~i~l-~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      +|.| +++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+.
T Consensus        69 ~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~-----------------------~~~ll~~A~~~~i~~L~~~c~~~l~  124 (127)
T 1r29_A           69 VINLDPEINPEGFNILLDFMYTSRLNLREGN-----------------------IMAVMATAMYLQMEHVVDTCRKFIK  124 (127)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHSCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCCCcCcCHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            8999 99999999999999999999886543                       6789999999999999999998875

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=182.11  Aligned_cols=111  Identities=27%  Similarity=0.345  Sum_probs=102.2

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      .+|++.+++.++.+|+++.+|||+|+++|++|+|||+|||++||||++||.+++                        ..
T Consensus         5 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~------------------------~~   60 (119)
T 3b84_A            5 VQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS------------------------GG   60 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT------------------------CC
T ss_pred             chHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC------------------------CC
Confidence            689999999999999999999999999999999999999999999999998865                        25


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      +|.|+++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+.
T Consensus        61 ~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~-----------------------v~~ll~~A~~~~i~~L~~~C~~~l~  115 (119)
T 3b84_A           61 SVVLPAGFAEIFGLLLDFFYTGHLALTSGN-----------------------RDQVLLAARELRVPEAVELCQSFKP  115 (119)
T ss_dssp             CEEECGGGHHHHHHHHHHHHHSCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred             eEEeCCCCHHHHHHHHHHHcCCCCccCHHH-----------------------HHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            799999999999999999999999887554                       6789999999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=2.6e-24  Score=194.25  Aligned_cols=134  Identities=19%  Similarity=0.229  Sum_probs=123.6

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...+..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|+++|+ +++.+| ..|+|||
T Consensus        33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d-~~g~t~L  109 (179)
T 3f6q_A           33 NQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-DINAVN-EHGNVPL  109 (179)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccC-CCCCCHH
Confidence            345788999999999999999999999 667655     48999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++++..+.++
T Consensus       110 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------------------~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          110 HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA------------------PLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCH------------------HHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHH------------------HHHHHHHHHHHHhhcCcccCCccc
Confidence            99999999999999999999999999999999999987                  567789999999999999876544

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=187.76  Aligned_cols=116  Identities=22%  Similarity=0.276  Sum_probs=101.3

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.|+.||+++.+|||+|+|+|++|+|||+|||++|+||++||.+++.|...                  ...
T Consensus        28 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~------------------~~~   89 (144)
T 2ppi_A           28 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDG------------------STY   89 (144)
T ss_dssp             TTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----------------------CCC
T ss_pred             cchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccC------------------CCc
Confidence            78999999999999999999999999999999999999999999999999988875310                  357


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQL  161 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l  161 (506)
                      +|.|+++++++|+.+|+|+|||++.++.+.                       +.+|+.+|++|+++.++..|++.|
T Consensus        90 ~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~-----------------------v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A           90 KIELEGISVMVMREILDYIFSGQIRLNEDT-----------------------IQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             EEECCSSCHHHHHHHHHHHTTSCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             EEEeCCCCHHHHHHHHHHHhCCCCCCCHHH-----------------------HHHHHHHHHHhCcHHHHHHHHHHh
Confidence            899999999999999999999999876543                       678999999999999999998764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.90  E-value=3.8e-24  Score=180.31  Aligned_cols=112  Identities=23%  Similarity=0.276  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.++.+|+++.+|||+|+++|++|+|||+|||++||||++||.++                         ..
T Consensus         9 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-------------------------~~   63 (121)
T 1buo_A            9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-------------------------SQ   63 (121)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-------------------------CS
T ss_pred             cchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-------------------------Cc
Confidence            78999999999999999999999999999999999999999999999999763                         25


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANM  164 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~  164 (506)
                      +|+++++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+.++
T Consensus        64 ~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~-----------------------~~~ll~~A~~~~i~~L~~~c~~~l~~~  120 (121)
T 1buo_A           64 HYTLDFLSPKTFQQILEYAYTATLQAKAED-----------------------LDDLLYAAEILEIEYLEEQCLKMLETI  120 (121)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHSCCCCCGGG-----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHhhcCCCcCCCHHH-----------------------HHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence            799999999999999999999999876443                       678999999999999999999988754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=3.6e-24  Score=190.47  Aligned_cols=124  Identities=30%  Similarity=0.371  Sum_probs=113.4

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...+..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +++.+| ..|+|||
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L  112 (165)
T 3twr_A           36 RDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVAD-LWKFTPL  112 (165)
T ss_dssp             CCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCCHH
T ss_pred             cccccCCCCHHHHHHHcChHHHHHHHH-hcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCC-CCCCcC-CCCCCHH
Confidence            345678899999999999999999999 667655     58999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhcc
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA  395 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga  395 (506)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+                   .++.+++++|+++||
T Consensus       113 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~-------------------~~~~~i~~~L~~~gA  164 (165)
T 3twr_A          113 HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-------------------DGDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC-------------------TTCHHHHHHHHTC--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh-------------------cCChHHHHHHhhccc
Confidence            9999999999999999999999999999999999986                   477799999999886

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=1.3e-23  Score=187.87  Aligned_cols=123  Identities=28%  Similarity=0.314  Sum_probs=114.9

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..|..|.||||+|+..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|+++|+ +++.+| ..|+||||
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~-~~g~t~L~  118 (169)
T 2y1l_E           42 AEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA-DVNAND-MEGHTPLH  118 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCC-CCCCCHHH
Confidence            45788999999999999999999999 667654     58999999999999999999999999 999998 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA  394 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g  394 (506)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+.                  .++.+++++|++.|
T Consensus       119 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------------------~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID------------------NGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHTC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------------------hCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998                  78999999999876

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.90  E-value=4e-25  Score=192.72  Aligned_cols=137  Identities=30%  Similarity=0.411  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceE
Q 010590            7 LRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVI   86 (506)
Q Consensus         7 ~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i   86 (506)
                      +++.+.+.++.+++++.+|||+|+++|+.|+|||.||+++|+||++||.+++.|+                    ...+|
T Consensus         8 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~--------------------~~~~i   67 (145)
T 4eoz_A            8 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES--------------------KKNRV   67 (145)
T ss_dssp             CCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHH--------------------HHTEE
T ss_pred             ChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCC--------------------CCceE
Confidence            4567899999999999999999999999999999999999999999999988775                    35789


Q ss_pred             EcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 010590           87 PVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVE  166 (506)
Q Consensus        87 ~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~  166 (506)
                      .++++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+...+ 
T Consensus        68 ~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-----------------------~~~ll~~A~~~~~~~l~~~c~~~l~~~l-  123 (145)
T 4eoz_A           68 EINDVEPEVFKEMMCFIYTGKAPNLDKM-----------------------ADDLLAAADKYALERLKVMCEDALCSNL-  123 (145)
T ss_dssp             EECSSCHHHHHHHHHHHHHSCCTTGGGT-----------------------HHHHHHHHHHTTCHHHHHHHHCC------
T ss_pred             EecCCCHHHHHHHHHhhccCccCCcHHH-----------------------HHHHHHHHHHhCHHHHHHHHHHHHHHhC-
Confidence            9999999999999999999998765433                       6789999999999999999999987554 


Q ss_pred             hhhHHHHHHHHHHhhhhhhHHHH
Q 010590          167 KASIEDVMKVLIASRKQDMHQLW  189 (506)
Q Consensus       167 ~~~~~~v~~~L~~a~~~~~~~L~  189 (506)
                        +.++++.++..|..+++.+|+
T Consensus       124 --~~~n~~~~l~~A~~~~~~~Lk  144 (145)
T 4eoz_A          124 --SVENAAEILILADLHSADQLK  144 (145)
T ss_dssp             -----------------------
T ss_pred             --CHHHHHHHHHHHHHhCHHHhc
Confidence              788999999999999988876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.9e-24  Score=201.29  Aligned_cols=149  Identities=19%  Similarity=0.094  Sum_probs=128.6

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~  363 (506)
                      +|.||||+|+..|+.++|++|++.|+ ++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. 
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~-   96 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMN-DPSQPN-EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS-   96 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSS-CTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCC-CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-
Confidence            57899999999999999999999999 999998 899999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccc
Q 010590          364 TSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNS  443 (506)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~  443 (506)
                                       .++.+++++|++.|++++.++          +..|.||||+|+.         ...+...+++
T Consensus        97 -----------------~g~~~~v~~Ll~~ga~~~~~~----------~~~g~tpL~~A~a---------~~~~~~~~v~  140 (229)
T 2vge_A           97 -----------------CNDTVICMALVQHGAAIFATT----------LSDGATAFEKCDP---------YREGYADCAT  140 (229)
T ss_dssp             -----------------TTCHHHHHHHHTTTCCTTCCC----------SSTTCCTGGGCCT---------TSTTHHHHHH
T ss_pred             -----------------cCCHHHHHHHHHcCCCccccc----------CCCCCCHHHHHHH---------HhcChHHHHH
Confidence                             789999999999999999873          2477899999821         1122334445


Q ss_pred             cccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          444 LNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       444 ~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      +++  +.+.++|.+|..|.||||.++..+.
T Consensus       141 ~Ll--~~ga~~~~~~~~~~~~l~~~~~~~~  168 (229)
T 2vge_A          141 YLA--DVEQSMGLMNSGAVYALWDYSAEFG  168 (229)
T ss_dssp             HHH--HHHHHTTTSGGGEEEESSCBCCSST
T ss_pred             HHH--HcCCCcccccCCchHHHHHHhhccc
Confidence            555  3557899999999999997666653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.90  E-value=2e-23  Score=196.52  Aligned_cols=171  Identities=16%  Similarity=0.096  Sum_probs=140.5

Q ss_pred             hcccchhHHHhhccccccccccccccc-ccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHH
Q 010590          221 LRHKSSLARRSLISHHHHHHHHDLSAA-AAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVE  294 (506)
Q Consensus       221 ~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~  294 (506)
                      ..+.|||.................... .....+..|.||||+|+..|+.+++++|+ +.|+++     .|.||||+|+.
T Consensus        40 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           40 KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHH
Confidence            456788877665543333222221112 22233455899999999999999999999 666654     48899999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCC-HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHHHHHHHcCC
Q 010590          295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVS-PDMVAVLLDHHADPNVRTV-DGVTPLDILRTLTSDFLFKGA  372 (506)
Q Consensus       295 ~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~-~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~l~~~~  372 (506)
                      .|+.+++++|+++|+ +++.++ ..|.||||+|+..++ .+++++|++.|++++..+. .|+||||+|+.          
T Consensus       119 ~~~~~~~~~Ll~~~~-~~~~~~-~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~----------  186 (240)
T 3eu9_A          119 FGHTSIVAYLIAKGQ-DVDMMD-QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL----------  186 (240)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHH----------
T ss_pred             cCHHHHHHHHHhcCC-CccccC-CCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHH----------
Confidence            999999999999999 999998 899999999997776 8999999999999999997 99999999998          


Q ss_pred             CCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          373 VPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       373 ~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                              .++.+++++|+++|++++.+           +..|.||||+|+
T Consensus       187 --------~~~~~~v~~Ll~~g~~~~~~-----------~~~g~t~l~~A~  218 (240)
T 3eu9_A          187 --------AGNTTVISLLLEAGANVDAQ-----------NIKGESALDLAK  218 (240)
T ss_dssp             --------HTCHHHHHHHHHHTCCTTCB-----------CTTSCBHHHHHH
T ss_pred             --------cCCHHHHHHHHHcCCCCCCc-----------CCCCCCHHHHHH
Confidence                    68899999999999999988           456679999884

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=176.05  Aligned_cols=111  Identities=22%  Similarity=0.301  Sum_probs=100.9

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.++.+|+++.+|||+|+++|++|+|||.|||++|+||++||.++  .                      ..
T Consensus         3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~--~----------------------~~   58 (116)
T 2vpk_A            3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--S----------------------EN   58 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC--C----------------------CS
T ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC--C----------------------CC
Confidence            68999999999999999999999999999999999999999999999999875  1                      24


Q ss_pred             eEEcC--CCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590           85 VIPVN--SVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus        85 ~i~l~--~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      .|.|+  ++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+.
T Consensus        59 ~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~-----------------------v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           59 NVFLDQSQVKADGFQKLLEFIYTGTLNLDSWN-----------------------VKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             CEECCTTTCCHHHHHHHHHHHHHSCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             eEEeecCCCCHHHHHHHHHHHcCCCcccCHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            57777  9999999999999999999886543                       7789999999999999999998763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=4.6e-23  Score=181.01  Aligned_cols=118  Identities=23%  Similarity=0.225  Sum_probs=109.9

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +++.+| ..|+||||+
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~  106 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKD-MLKMTALHW  106 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCC-TTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCC-CCCCCC-CCCCCHHHH
Confidence            4678999999999999999999999 677655     48999999999999999999999999 999999 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHH
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLEL  390 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  390 (506)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|
T Consensus       107 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------------------~~~~~i~~~L  152 (153)
T 1awc_B          107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID------------------NGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH------------------cCCHHHHHHh
Confidence            999999999999999999999999999999999998                  6777777665

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.90  E-value=9.6e-24  Score=182.09  Aligned_cols=115  Identities=23%  Similarity=0.263  Sum_probs=105.3

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      .+|++.+++.|+.||+++.+|||+|+|+|++|+|||+|||++|+||++||.+++.|+                      .
T Consensus        17 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~----------------------~   74 (138)
T 2z8h_A           17 SVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE----------------------L   74 (138)
T ss_dssp             SSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT----------------------E
T ss_pred             CchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC----------------------c
Confidence            689999999999999999999999999999999999999999999999999988653                      5


Q ss_pred             eEEcC-CCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 010590           85 VIPVN-SVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAN  163 (506)
Q Consensus        85 ~i~l~-~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~  163 (506)
                      .|.++ ++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|.+.+..
T Consensus        75 ~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~-----------------------v~~ll~~A~~~~i~~L~~~C~~~l~~  131 (138)
T 2z8h_A           75 TVTLPEEVTVKGFEPLIQFAYTAKLILSKDN-----------------------VDEVCRCVEFLSVHNIEESCFQFLKF  131 (138)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHSCCCCCTTT-----------------------HHHHHHHHHHHTCGGGHHHHHHHTTC
T ss_pred             eEEeCCCCCHHHHHHHHHHhcCCCcccCHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            78995 8999999999999999999887554                       67899999999999999999998764


Q ss_pred             H
Q 010590          164 M  164 (506)
Q Consensus       164 ~  164 (506)
                      .
T Consensus       132 ~  132 (138)
T 2z8h_A          132 K  132 (138)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.89  E-value=5.5e-24  Score=182.77  Aligned_cols=115  Identities=25%  Similarity=0.337  Sum_probs=100.2

Q ss_pred             hhhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 010590            4 EESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPT   83 (506)
Q Consensus         4 ~~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   83 (506)
                      ..+|++.+++.|+.+|+++.+|||+|+|+|++|+|||+|||++|+||++||.+++                        .
T Consensus         5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~------------------------~   60 (135)
T 2yy9_A            5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT------------------------G   60 (135)
T ss_dssp             --CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC----------------------------
T ss_pred             cccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC------------------------C
Confidence            3689999999999999999999999999999999999999999999999998865                        1


Q ss_pred             ceEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 010590           84 GVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAN  163 (506)
Q Consensus        84 ~~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~  163 (506)
                      .+|.|+++++++|+.+|+|+|||++.++.+.                       +.+|+.+|++|+++.++..|++.+.+
T Consensus        61 ~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~-----------------------v~~ll~~A~~l~i~~L~~~C~~~l~~  117 (135)
T 2yy9_A           61 GSVVLPAGFAEIFGLLLDFFYTGHLALTSGN-----------------------RDQVLLAAKELRVPEAVELCQSFQPQ  117 (135)
T ss_dssp             CCEEECGGGHHHHHHHHHHHHHSCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHHCCC-
T ss_pred             CeEEeCCCCHHHHHHHHHHHhCCCCCCCHHH-----------------------HHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4699999999999999999999999887554                       67899999999999999999998765


Q ss_pred             HH
Q 010590          164 MV  165 (506)
Q Consensus       164 ~l  165 (506)
                      .+
T Consensus       118 ~l  119 (135)
T 2yy9_A          118 TS  119 (135)
T ss_dssp             --
T ss_pred             hc
Confidence            54

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.89  E-value=8.2e-24  Score=208.59  Aligned_cols=147  Identities=29%  Similarity=0.402  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceE
Q 010590            7 LRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVI   86 (506)
Q Consensus         7 ~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i   86 (506)
                      .++.+.+.+..|++++.+|||+|+|+|++|+|||+|||++||||++||.++|.|+                    ...+|
T Consensus       157 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~--------------------~~~~i  216 (312)
T 3hqi_A          157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES--------------------KKNRV  216 (312)
T ss_dssp             CCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-------------------------CCSEE
T ss_pred             CCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCcccc--------------------CCceE
Confidence            3557889999999999999999999999999999999999999999999999887                    35789


Q ss_pred             EcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 010590           87 PVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVE  166 (506)
Q Consensus        87 ~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~  166 (506)
                      .|+++++++|+.+|+|+|||++.+..                       ..+.+|+.+|++|+++.++.+|++.|..   
T Consensus       217 ~l~~~~~~~f~~~L~~iYt~~~~~~~-----------------------~~~~~ll~~A~~~~~~~l~~~c~~~l~~---  270 (312)
T 3hqi_A          217 EINDVEPEVFKEMMCFIYTGKAPNLD-----------------------KMADDLLAAADKYALERLKVMCEDALCS---  270 (312)
T ss_dssp             EECSSCHHHHHHHHHHHHHSCCTTHH-----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred             EecCCCHHHHHHHHHhhcCCCCCChH-----------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHc---
Confidence            99999999999999999999986542                       4578999999999999999999999874   


Q ss_pred             hhhHHHHHHHHHHhhhhhhHHHHHHHhHHHHhc
Q 010590          167 KASIEDVMKVLIASRKQDMHQLWTTCSHLVAKS  199 (506)
Q Consensus       167 ~~~~~~v~~~L~~a~~~~~~~L~~~cl~~i~~~  199 (506)
                      .+..+++..++..|..+++..|+..|++|+..+
T Consensus       271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~  303 (312)
T 3hqi_A          271 NLSVENAAEILILADLHSADQLKTQAVDFINYH  303 (312)
T ss_dssp             TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            446789999999999999999999999999875

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.89  E-value=1.1e-23  Score=176.91  Aligned_cols=109  Identities=24%  Similarity=0.375  Sum_probs=100.6

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      .+|++.+++.++.+|+++.+|||+|+++|++|+|||.|||++|+||++||.++                         ..
T Consensus         8 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-------------------------~~   62 (119)
T 2q81_A            8 PQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-------------------------KD   62 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-------------------------CS
T ss_pred             chHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-------------------------CC
Confidence            68999999999999999999999999999999999999999999999999862                         25


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQL  161 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l  161 (506)
                      +|.++++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+
T Consensus        63 ~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~-----------------------~~~ll~~A~~l~i~~L~~~C~~~l  116 (119)
T 2q81_A           63 VVHLDISNAAGLGQVLEFMYTAKLSLSPEN-----------------------VDDVLAVATFLQMQDIITACHALK  116 (119)
T ss_dssp             GGGGGGCCHHHHHHHHHHHHHSCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHcCCCCccCHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            688899999999999999999999887554                       678999999999999999998876

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.89  E-value=2.6e-24  Score=182.12  Aligned_cols=112  Identities=24%  Similarity=0.283  Sum_probs=100.7

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.++.+|+++.+|||+|+|+|++|+|||+|||++|+||++||.+++.|+                      .
T Consensus        10 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~----------------------~   67 (124)
T 2ihc_A           10 SVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE----------------------L   67 (124)
T ss_dssp             SSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C----------------------E
T ss_pred             cchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC----------------------c
Confidence            679999999999999999999999999999999999999999999999999988664                      5


Q ss_pred             eEEc-CCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010590           85 VIPV-NSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQL  161 (506)
Q Consensus        85 ~i~l-~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l  161 (506)
                      .|.+ +++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+
T Consensus        68 ~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~-----------------------v~~ll~~A~~~~~~~L~~~C~~~l  122 (124)
T 2ihc_A           68 NITLPEEVTVKGFEPLIQFAYTAKLILSKEN-----------------------VDEVCKCVEFLSVHNIEESCFQFL  122 (124)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHSEEEEETTT-----------------------HHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred             eEeecCCcCHHHHHHHHHHhcCCCcccCHHH-----------------------HHHHHHHHHHHCCHHHHHHHHHHH
Confidence            7888 49999999999999999999887654                       678999999999999999988754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=5.9e-23  Score=173.40  Aligned_cols=108  Identities=31%  Similarity=0.362  Sum_probs=98.8

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d-~~g~tpL~~   79 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DINAPD-KHHITPLLS   79 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC-CTTCCC-TTSCCHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHH-HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCcCC-CCCCCHHHH
Confidence            3567899999999999999999999 566654     58999999999999999999999999 999999 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            999999999999999999999999999999999964

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=8.4e-23  Score=179.72  Aligned_cols=121  Identities=22%  Similarity=0.292  Sum_probs=112.6

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...+..|.||||+ +..|+.+++++|+ +.|+++     +|.||||+|+..|+.+++++|+++|+ +++.+| ..|+|||
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L  105 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-DVNVPD-GTGALPI  105 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCC-TTSCCHH
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCcC-CCCCcHH
Confidence            3457889999999 9999999999999 667655     48999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHh
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQS  393 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~  393 (506)
                      |+|+..|+.+++++|+++ ++++.+|..|+||||+|+.                  .++.+++++|+++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~------------------~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          106 HLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ------------------RGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHH------------------SCCHHHHHHHHTT
T ss_pred             HHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHH------------------cCcHHHHHHHHhh
Confidence            999999999999999999 9999999999999999998                  7889999998874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=7.9e-24  Score=182.32  Aligned_cols=109  Identities=26%  Similarity=0.245  Sum_probs=103.3

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..|..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +++.+| ..|+||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~-~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-LVNTTG-YQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-GGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-cccCcC-CCCCCHHH
Confidence            56889999999999999999999999 667654     58999999999999999999999999 999998 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            9999999999999999999999999999999999985

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.89  E-value=4e-24  Score=181.35  Aligned_cols=110  Identities=25%  Similarity=0.266  Sum_probs=101.1

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      .+|++.+++.++.+|+++.+|||+|+|+|++|+|||+|||++|+||++||.+++.|.                      .
T Consensus        13 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~----------------------~   70 (125)
T 3ohu_A           13 TVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKND----------------------L   70 (125)
T ss_dssp             SSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSS----------------------C
T ss_pred             HHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCC----------------------c
Confidence            679999999999999999999999999999999999999999999999999987653                      6


Q ss_pred             eEEcCC-CCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 010590           85 VIPVNS-VGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQK  159 (506)
Q Consensus        85 ~i~l~~-i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~  159 (506)
                      +|.+++ +++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++
T Consensus        71 ~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~-----------------------v~~ll~~A~~l~i~~L~~~C~~  123 (125)
T 3ohu_A           71 VVSLPEEVTARGFGPLLQFAYTAKLLLSREN-----------------------IREVIRCAEFLRMHNLEDSCFS  123 (125)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTTSEEEECTTT-----------------------HHHHHHHHHHHTBSSCTTSSCC
T ss_pred             EEEeCCCCCHHHHHHHHHhHcCCceEECHHH-----------------------HHHHHHHHHHhCCHHHHHHHHH
Confidence            799998 999999999999999999987654                       6789999999999998887754

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.89  E-value=3.3e-23  Score=171.24  Aligned_cols=102  Identities=31%  Similarity=0.449  Sum_probs=89.0

Q ss_pred             HhcCCCceeEEEEECC----eEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCH
Q 010590           18 LINGQAFSDVTFSVEG----RLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGY   93 (506)
Q Consensus        18 l~~~~~~~Dv~~~v~~----~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~   93 (506)
                      |++++.+|||+|++++    +.|+|||.|||++|+||++||.++|.|+                    . .+|.++++++
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~--------------------~-~~i~l~~~~~   60 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV--------------------K-SEIHIPDVEP   60 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC--------------------------C-CEEEETTSCH
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC--------------------C-CeEEeCCCCH
Confidence            6889999999999988    8999999999999999999999999886                    3 7899999999


Q ss_pred             HHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 010590           94 EVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAN  163 (506)
Q Consensus        94 ~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~  163 (506)
                      ++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+.+
T Consensus        61 ~~f~~~l~~iYt~~~~~~~~~-----------------------~~~ll~~A~~~~~~~L~~~c~~~l~~  107 (109)
T 2vkp_A           61 AAFLILLKYMYSDEIDLEADT-----------------------VLATLYAAKKYIVPALAKACVNFLET  107 (109)
T ss_dssp             HHHHHHHHHHHHCCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCccCCHHH-----------------------HHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            999999999999999887544                       67899999999999999999998864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.3e-23  Score=196.41  Aligned_cols=134  Identities=16%  Similarity=0.213  Sum_probs=108.9

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCChHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLEL-GAADVNYPAGPAGKTPL  324 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~v~~~~~~~g~tpL  324 (506)
                      ..+..|.||||+||..|+.+++++|+ +.|+++     +|+||||+||..|+.++|++|++. |+ ++|.+| ..|+|||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~-~~~~~d-~~g~tpL  144 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI-ELNQQN-KLGDTAL  144 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC-CCCCCC-TTSCCHH
T ss_pred             ccccccccccccccccCcHHHHHHHH-hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC-CccccC-CCCCCHH
Confidence            34678899999999999999999999 566654     589999999999999999999999 89 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .+..++++.|++.|++.+.++.++
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------------------~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN------------------AACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS------------------HHHHHHHC----------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc------------------hhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999999999999999999986                  578889999999999999887766


Q ss_pred             C
Q 010590          405 L  405 (506)
Q Consensus       405 ~  405 (506)
                      .
T Consensus       207 ~  207 (222)
T 3ehr_A          207 Y  207 (222)
T ss_dssp             -
T ss_pred             h
Confidence            5

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.4e-23  Score=190.93  Aligned_cols=127  Identities=13%  Similarity=0.120  Sum_probs=113.9

Q ss_pred             ccccHHHHHHHhcCCH----HHHHHHHhcCCCCC-----CChHHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCC
Q 010590          254 DQKIRRMRRALDSSDV----ELVKLMVMGEGLNL-----DEALALHYAVENCS------REVVKALLELGAADVNYPAGP  318 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~------~~~v~~Ll~~g~~~v~~~~~~  318 (506)
                      ..|.||||+|+..|+.    +++++|| +.|+|+     +|+||||+|+..|+      .++|++||++|+ ++|.+| .
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga-din~~d-~  112 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA-DITALY-K  112 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC-CSSSCB-G
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC-CCCccC-C
Confidence            6799999999999986    5999999 778766     48999999999987      688999999999 999999 8


Q ss_pred             CCC-hHHHHHHHhC-----CHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHH
Q 010590          319 AGK-TPLHIAAEMV-----SPDMVAVLLD-HHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELV  391 (506)
Q Consensus       319 ~g~-tpLh~A~~~~-----~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll  391 (506)
                      .|+ ||||+|+..+     +.+++++|++ +|+|++.+|..|+||||+|+.                  .++.+++++|.
T Consensus       113 ~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~------------------~~~~~~v~~L~  174 (186)
T 3t8k_A          113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR------------------CQKPIALKMME  174 (186)
T ss_dssp             GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT------------------TTCHHHHHHHH
T ss_pred             CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH------------------cCCHHHHHHHH
Confidence            999 9999999844     4579999999 999999999999999999997                  68889999999


Q ss_pred             HhccCccccc
Q 010590          392 QSAALVLSRE  401 (506)
Q Consensus       392 ~~ga~~~~~~  401 (506)
                      +...+.+.++
T Consensus       175 ~~~~~~~~~~  184 (186)
T 3t8k_A          175 DYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHHhccc
Confidence            9887777664

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=2e-22  Score=173.37  Aligned_cols=98  Identities=31%  Similarity=0.314  Sum_probs=92.0

Q ss_pred             CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          283 LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       283 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      ..|.||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGA-DVNAKD-EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCC-CCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            357899999999999999999999999 999998 899999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          363 LTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       363 ~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                                        .++.+++++|+++|++++.+
T Consensus        90 ------------------~~~~~~v~~Ll~~g~~~~~~  109 (136)
T 2jab_A           90 ------------------IGHLEIAEVLLKHGADVNAQ  109 (136)
T ss_dssp             ------------------HTCHHHHHHHHHTTCCTTCC
T ss_pred             ------------------cCCHHHHHHHHHcCCCCcCc
Confidence                              68899999999988776644

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1.1e-24  Score=207.08  Aligned_cols=107  Identities=26%  Similarity=0.336  Sum_probs=75.3

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHH
Q 010590          253 EDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIA  327 (506)
Q Consensus       253 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A  327 (506)
                      +..|.||||+|+..|+.++++.|++  ++++     +|+||||+|+..|+.++|++|+++|+ ++|.+++..|+||||+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-CTTCCCSSSCCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCcCCCCCCCCHHHHH
Confidence            3566777777777777777777773  4433     36777777777777777777777777 77766645677777777


Q ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 010590          328 AEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       328 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~  362 (506)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            77777777777777777777777777777777764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=6.5e-23  Score=176.42  Aligned_cols=98  Identities=24%  Similarity=0.229  Sum_probs=91.9

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVD-GVTPLDIL  360 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~-g~tpLh~A  360 (506)
                      +..|.||||+|+..|+.+++++|+++|+ +++.++ ..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+|
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A   85 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAGA-DPNALN-RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDA   85 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCC-CcCCcC-CCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHH
Confidence            4468999999999999999999999999 999998 899999999999 9999999999999999999999 99999999


Q ss_pred             HHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       361 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      +.                  .++.+++++|++.|++++.+
T Consensus        86 ~~------------------~~~~~~v~~Ll~~ga~~~~~  107 (136)
T 1d9s_A           86 AR------------------EGFLDTLVVLHRAGARLDVC  107 (136)
T ss_dssp             HH------------------HTCHHHHHHHHHTCCCCCCC
T ss_pred             HH------------------cCCHHHHHHHHHcCCCCCcc
Confidence            98                  68899999999988876654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=1.2e-23  Score=185.58  Aligned_cols=143  Identities=22%  Similarity=0.133  Sum_probs=108.4

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCc-HHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVT-PLDIL  360 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t-pLh~A  360 (506)
                      +..|.||||+|+..|+.++|++|+++|+ +++.++ ..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGA-NPNAPN-SYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTC-CTTCCC-SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCC-CCCCCC-CCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            3468999999999999999999999999 999998 89999999996 99999999999999999999999999 99999


Q ss_pred             HHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccc
Q 010590          361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATIN  440 (506)
Q Consensus       361 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~  440 (506)
                      +.                  .++.+++++|+++|++++.+           +..|.||||+|+...           ...
T Consensus        86 ~~------------------~~~~~~v~~Ll~~ga~~~~~-----------d~~g~tpl~~A~~~~-----------~~~  125 (156)
T 1bi7_B           86 AR------------------EGFLDTLVVLHRAGARLDVR-----------DAWGRLPVDLAEELG-----------HRD  125 (156)
T ss_dssp             HH------------------HTCHHHHHHHHHHTCCSSCC-----------CTTCCCHHHHHHHHT-----------CHH
T ss_pred             HH------------------CCCHHHHHHHHHcCCCCccc-----------CCCCCCHHHHHHHhC-----------HHH
Confidence            98                  68899999999999999988           456779999984322           223


Q ss_pred             ccccccCCCcceeeccCCCCCCCcchhhh
Q 010590          441 NNSLNLDSSRLVYLNLGAGTGNSAHHHHH  469 (506)
Q Consensus       441 ~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa  469 (506)
                      ++++++  ..+.++|.+|..|+||.+-+.
T Consensus       126 ~v~~Ll--~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B          126 VARYLR--AAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHHS--SCC------------------
T ss_pred             HHHHHH--HcCCCCCccCcCcCcccccCC
Confidence            445555  456899999999999988543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=4.3e-22  Score=195.19  Aligned_cols=133  Identities=28%  Similarity=0.311  Sum_probs=117.8

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----------CChHHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCC
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGLNL-----------DEALALHYAVEN---CSREVVKALLELGAADVNYPAGPA  319 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----------~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~v~~~~~~~  319 (506)
                      ..+.++|+.|+..|+.+.++.|+ ..|+|+           .|+||||+|+..   |+.++|++||+.|+ ++|.+| ..
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-dvn~~d-~~  225 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-HLDAKA-AD  225 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS-CTTCCC-TT
T ss_pred             CchHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC-CCCCCC-CC
Confidence            34578999999999999999999 555443           578999999997   89999999999999 999999 89


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccc
Q 010590          320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLS  399 (506)
Q Consensus       320 g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~  399 (506)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++.|++   
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~------------------~~~~~iv~~Ll~~ga~---  284 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK------------------KHHKECEELLEQAQAG---  284 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHH------------------HTCHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------------------cCCHHHHHHHHHhcCC---
Confidence            9999999999999999999999999999999999999999998                  6888999999999986   


Q ss_pred             cccCCCCCCCCCCccccCCCCCCcc
Q 010590          400 REEGILNEPSSSTATVIYPPPMSCC  424 (506)
Q Consensus       400 ~~~~~~~~~~~~~~~~~tplh~a~~  424 (506)
                                    .|.||||+|+.
T Consensus       285 --------------~g~tpLh~A~~  295 (301)
T 2b0o_E          285 --------------TFAFPLHVDYS  295 (301)
T ss_dssp             --------------TTSSCCC----
T ss_pred             --------------CCCChhHHHHh
Confidence                          36799999853

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.3e-22  Score=183.93  Aligned_cols=109  Identities=26%  Similarity=0.344  Sum_probs=101.7

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+..|.||||+|+..|+.++++.|++  ++++     +|+||||+|+..|+.+++++|+++|+ ++|.+++..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA-DLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcCCCCCCCCHHHH
Confidence            46789999999999999999999994  5544     58999999999999999999999999 9999876789999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~  363 (506)
                      |+..|+.+++++|+++|++++.+|.+|+||||+|+..
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            9999999999999999999999999999999999964

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.87  E-value=4.6e-23  Score=175.69  Aligned_cols=112  Identities=23%  Similarity=0.365  Sum_probs=97.6

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.++.+|+++.+|||+|+|+|++|+|||+|||++|+||++||.++  .                      ..
T Consensus        14 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~--~----------------------~~   69 (129)
T 3ga1_A           14 PNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS--R----------------------SA   69 (129)
T ss_dssp             TTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC--C----------------------CS
T ss_pred             CcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC--C----------------------CC
Confidence            68899999999999999999999999999999999999999999999999875  1                      36


Q ss_pred             eEEcC-CCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 010590           85 VIPVN-SVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAN  163 (506)
Q Consensus        85 ~i~l~-~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~  163 (506)
                      +|.|+ ++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+.+
T Consensus        70 ~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~-----------------------~~~ll~~A~~~~i~~l~~~C~~~L~~  126 (129)
T 3ga1_A           70 VVELPAAVQPQSFQQILSFCYTGRLSMNVGD-----------------------QDLLMYTAGFLQIQEIMEKGTEFFLK  126 (129)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHSEEECCTTT-----------------------HHHHHHHHHHTTBTTSSCC-------
T ss_pred             EEEECCCCCHHHHHHHHHHHhCCccccCHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            89996 9999999999999999999987654                       67899999999999999999998764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=5.1e-22  Score=192.28  Aligned_cols=155  Identities=22%  Similarity=0.179  Sum_probs=129.5

Q ss_pred             HhhcccchhHHHhhccccccccccccccc-ccccCCccccHHHHHHH-----hcCCHHHHHHHHhcCCC-----CCCChH
Q 010590          219 EDLRHKSSLARRSLISHHHHHHHHDLSAA-AAADLEDQKIRRMRRAL-----DSSDVELVKLMVMGEGL-----NLDEAL  287 (506)
Q Consensus       219 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~~~~-----d~~g~t  287 (506)
                      .+..+.|||.................... .....+..|.||||+|+     ..++.+++++|+ +.|.     +..|+|
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t  185 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF-RLGNINAKASQAGQT  185 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHH-HHSCTTCCCTTTCCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHH-HcCCCccccCCCCCC
Confidence            44567788877665444333322222222 45567889999999999     678999999999 4443     335999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHHH
Q 010590          288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLD-HHADPNVRTVDGVTPLDILRTLTSD  366 (506)
Q Consensus       288 ~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpLh~A~~~~~~  366 (506)
                      |||+|+..|+.++|++|+++|+ ++|.+| ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.    
T Consensus       186 pLh~A~~~g~~~~v~~Ll~~ga-d~n~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~----  259 (276)
T 4hbd_A          186 ALMLAVSHGRVDVVKALLACEA-DVNVQD-DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD----  259 (276)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH----
T ss_pred             HHHHHHHcCCHHHHHHHHhCCC-CCCCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH----
Confidence            9999999999999999999999 999999 899999999999999999999999 899999999999999999998    


Q ss_pred             HHHcCCCCCCcccCCChHHHHHHHHHhc
Q 010590          367 FLFKGAVPGLTHIEPNKLRLCLELVQSA  394 (506)
Q Consensus       367 ~l~~~~~~~~~~~~~~~~~~~~~Ll~~g  394 (506)
                                    .++.+++++|++++
T Consensus       260 --------------~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          260 --------------AGQSEIASMLYSRM  273 (276)
T ss_dssp             --------------HTCHHHHHHHHHHC
T ss_pred             --------------cCCHHHHHHHHhcc
Confidence                          68899999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=1.2e-22  Score=193.00  Aligned_cols=139  Identities=19%  Similarity=0.174  Sum_probs=110.7

Q ss_pred             hcccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC------CChHHHHHHHH
Q 010590          221 LRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL------DEALALHYAVE  294 (506)
Q Consensus       221 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~------~g~t~Lh~A~~  294 (506)
                      ..+.|||................. .......|..|.||||+|+..|+.++|++|+ +.|+++      +|+||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHH
Confidence            356788887765544433322222 3344567888999999999999999999999 667655      48899999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCC
Q 010590          295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVP  374 (506)
Q Consensus       295 ~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~  374 (506)
                      .|+.++|++|+++|+ +++.+| ..|+||||+|+..+.                 ...+.||||+|+.            
T Consensus       121 ~g~~~~v~~Ll~~ga-~~~~~d-~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~------------  169 (244)
T 3ui2_A          121 YVRPEVVEALVELGA-DIEVED-ERGLTALELAREILK-----------------TTPKGNPMQFGRR------------  169 (244)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCC-TTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHH------------
T ss_pred             cCCHHHHHHHHHCCC-CCCCCC-CCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHH------------
Confidence            999999999999999 999998 899999999986332                 2568899999998            


Q ss_pred             CCcccCCChHHHHHHHHHhccCcc
Q 010590          375 GLTHIEPNKLRLCLELVQSAALVL  398 (506)
Q Consensus       375 ~~~~~~~~~~~~~~~Ll~~ga~~~  398 (506)
                            .++.+++.+|++.+.+..
T Consensus       170 ------~g~~~iv~~L~~~~~~~~  187 (244)
T 3ui2_A          170 ------IGLEKVINVLEGQVFEYA  187 (244)
T ss_dssp             ------HHHHHHHHHHHHHHEEEE
T ss_pred             ------cChHHHHHHHHHhccccc
Confidence                  578889999999876543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=7.1e-22  Score=158.05  Aligned_cols=93  Identities=39%  Similarity=0.517  Sum_probs=87.2

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~  363 (506)
                      +|+||||+|+..|+.+++++|++.|+ ++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~-   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH-
Confidence            58899999999999999999999999 999998 899999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          364 TSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                                       .++.+++++|+++||+
T Consensus        78 -----------------~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 -----------------NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -----------------TTCHHHHHHHHHTTCC
T ss_pred             -----------------cCCHHHHHHHHHcCCC
Confidence                             7899999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=5.2e-22  Score=170.84  Aligned_cols=111  Identities=25%  Similarity=0.199  Sum_probs=104.7

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      |.+|+||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKD-HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            5579999999999999999999999999 999998 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          362 TLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      .                  .++.+++++|++.|++++.+           +..|.||||+|+
T Consensus        85 ~------------------~~~~~~v~~Ll~~ga~~~~~-----------~~~g~tpl~~A~  117 (137)
T 3c5r_A           85 K------------------NGHVDIVKLLLSYGASRNAV-----------NIFGLRPVDYTD  117 (137)
T ss_dssp             H------------------TTCHHHHHHHHHTTCCTTCC-----------CTTSCCGGGGCC
T ss_pred             H------------------cCCHHHHHHHHHcCCCCCCC-----------CCCCCCHHHHHh
Confidence            8                  78999999999999999988           556779999984

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=5.8e-22  Score=167.25  Aligned_cols=110  Identities=22%  Similarity=0.197  Sum_probs=101.5

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      +..|.||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTL-EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCC-TTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCC-CcCccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            3468899999999999999999999999 999998 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          362 TLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                      .                  .++.+++++|+++|++++.+           +..|.||||+|
T Consensus        82 ~------------------~~~~~~v~~Ll~~ga~~~~~-----------~~~g~t~l~~A  113 (123)
T 3aaa_C           82 Y------------------EGHVSCVKLLLSKGADKTVK-----------GPDGLTAFEAT  113 (123)
T ss_dssp             H------------------HTCHHHHHHHHHTTCCTTCC-----------CTTSCCHHHHC
T ss_pred             H------------------cCCHHHHHHHHHcCCCCCCc-----------CCCCCCHHHHh
Confidence            8                  68899999999999999988           45667899887

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.86  E-value=1.9e-22  Score=168.23  Aligned_cols=103  Identities=28%  Similarity=0.434  Sum_probs=93.7

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.++.+|+++.+|||+|+|+|++|+|||+|||++|+||++||.++                         ..
T Consensus        12 ~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-------------------------~~   66 (116)
T 3fkc_A           12 IQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-------------------------GQ   66 (116)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-------------------------CS
T ss_pred             ccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-------------------------CC
Confidence            78999999999999999999999999999999999999999999999999874                         25


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccce-eccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQV-SIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLAL  155 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~-~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~  155 (506)
                      +|.++++++++|+.+|+|+|||++ .++.                       +.+.+++.+|++|+++.++.
T Consensus        67 ~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~-----------------------~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           67 VVELSFIRAEIFAEILNYIYSSKIVRVRS-----------------------DLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             EEEECSSCHHHHHHHHHHHTTSCCCSCCH-----------------------HHHHHHHHHHHHHTCHHHHT
T ss_pred             EEEeCCCCHHHHHHHHHhhcCCCcCCCCH-----------------------HHHHHHHHHHHHhCccccCc
Confidence            799999999999999999999998 4542                       34788999999999998864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.2e-21  Score=163.64  Aligned_cols=97  Identities=38%  Similarity=0.496  Sum_probs=91.7

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL  363 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~  363 (506)
                      +|+||||+|+..|+.+++++|++.|+ +++..+ ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~-   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC-CCCCcC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH-
Confidence            58999999999999999999999999 999998 899999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          364 TSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                                       .++.+++++|+++|++++.+
T Consensus        78 -----------------~~~~~~~~~Ll~~g~~~~~~   97 (126)
T 1n0r_A           78 -----------------NGHLEVVKLLLEAGADVNAK   97 (126)
T ss_dssp             -----------------TTCHHHHHHHHHTTCCTTCC
T ss_pred             -----------------cChHHHHHHHHHcCCCCccc
Confidence                             78999999999988776544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=5.7e-22  Score=185.28  Aligned_cols=108  Identities=20%  Similarity=0.107  Sum_probs=99.8

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH-HADPNVRTVDGVTPLDILRT  362 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~  362 (506)
                      +|.||||+|+..|+.++|++|++.|+ +++.+| ..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRV-GVNGLD-KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCC-CccccC-CCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            57899999999999999999999999 999999 8999999999999999999999999 99999999999999999998


Q ss_pred             HHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          363 LTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       363 ~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                                        .++.+++++|+++|++++.+           +..|.||||+|
T Consensus       150 ------------------~~~~~~v~~Ll~~ga~~~~~-----------~~~g~t~l~~A  180 (222)
T 3ehr_A          150 ------------------KGYADIVQLLLAKGARTDLR-----------NIEKKLAFDMA  180 (222)
T ss_dssp             ------------------HTCHHHHHHHHHHTCCSCCC-----------CTTSCCHHHHC
T ss_pred             ------------------cCCHHHHHHHHHcCCCCccc-----------cCCCCCHHHHh
Confidence                              68899999999999998877           34455677766

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=3.5e-22  Score=181.02  Aligned_cols=128  Identities=19%  Similarity=0.185  Sum_probs=114.9

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRT-VDGVTPLDILRT  362 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~  362 (506)
                      +|.||||+|+..|+.++++.|++ |+ ++|.+| ..|+||||+|+..|+.+++++|+++|++++.+| ..|+||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DR-DVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            58999999999999999999999 99 999999 899999999999999999999999999999998 899999999998


Q ss_pred             HHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccccc
Q 010590          363 LTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNN  442 (506)
Q Consensus       363 ~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~  442 (506)
                                        .++.+++++|+++|++++.+           +..|.||||+|+.                  
T Consensus       120 ------------------~~~~~~v~~Ll~~ga~~~~~-----------d~~g~tpl~~A~~------------------  152 (183)
T 3deo_A          120 ------------------YVRPEVVEALVELGADIEVE-----------DERGLTALELARE------------------  152 (183)
T ss_dssp             ------------------TTCHHHHHHHHHHTCCTTCC-----------CTTSCCHHHHHHH------------------
T ss_pred             ------------------cCcHHHHHHHHHcCCCCcCC-----------CCCCCCHHHHHHH------------------
Confidence                              78999999999999999987           5567799999831                  


Q ss_pred             ccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          443 SLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       443 ~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                                  ......+.|||++|+..|.
T Consensus       153 ------------~~~~~~~~~~l~~a~~~~~  171 (183)
T 3deo_A          153 ------------ILKTTPKGNPMQFGRRIGL  171 (183)
T ss_dssp             ------------HHHTCCCCSHHHHHHHHHH
T ss_pred             ------------hccCcccccHHHHHHHcCH
Confidence                        1112457899999998874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=8.7e-21  Score=183.72  Aligned_cols=121  Identities=23%  Similarity=0.298  Sum_probs=113.0

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----------CChHHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCC
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----------DEALALHYAVEN---CSREVVKALLELGAADVNYPAGPAG  320 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----------~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~v~~~~~~~g  320 (506)
                      ...++|+.|+..|+.+.++.++ ..|.++           .|+||||+|+..   |+.+++++|+++|+ ++|.+| ..|
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll-~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga-~in~~d-~~g  205 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAY-ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-NLDKQT-GKG  205 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH-HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-CTTCCC-TTC
T ss_pred             hhhhhhhhHhhhcccHHHHHHH-HhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC-CccccC-CCC
Confidence            4578999999999999999999 556542           489999999999   89999999999999 999999 899


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       321 ~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      +||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.                  .++.+++++|+++|++
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~------------------~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR------------------LKHEHCEELLTQALSG  263 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHH------------------cCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999998                  7899999999999984

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=1.8e-23  Score=210.74  Aligned_cols=165  Identities=12%  Similarity=-0.017  Sum_probs=127.2

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHhcCCC------C--CCChHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCCh
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVMGEGL------N--LDEALALHYAVENCSREVVKALLELGAAD---VNYPAGPAGKT  322 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------d--~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~---v~~~~~~~g~t  322 (506)
                      ..+.||||+|+..|+.++|++|+ +.|.      +  ..|.||||+|+..|+.++|++|+++|+ +   ++..+ .. +|
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll-~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ga-d~~~~~i~~-~~-~T  165 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLC-LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP-TEIMAMIQA-EN-YH  165 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHT-TC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT-TTHHHHHSH-HH-HH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHH-HcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCC-CccccccCC-CC-CC
Confidence            34569999999999999999999 5554      2  348899999999999999999999998 6   34433 33 99


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccc
Q 010590          323 PLHIAAEMVSPDMVAVLLDHHADPNV--RTVDGVTPLDILR-TLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLS  399 (506)
Q Consensus       323 pLh~A~~~~~~~~v~~Ll~~ga~~~~--~d~~g~tpLh~A~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~  399 (506)
                      |||+|+..|+.++|++|+++|++++.  .|..|+||||+|+ .                  .++.+++++|++.|++   
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~------------------~G~~eiv~~Ll~~ga~---  224 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG------------------RGHHNVINFLLDCPVM---  224 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST------------------TCCHHHHHHHTTSHHH---
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHH------------------CCCHHHHHHHHhCCCc---
Confidence            99999999999999999999999987  8999999999999 7                  7888888888887642   


Q ss_pred             cccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCCC
Q 010590          400 REEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSR  475 (506)
Q Consensus       400 ~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~~  475 (506)
                                     |.||||.|+..           +...++.++.  ..+.+++..|    ++++.|+..|...
T Consensus       225 ---------------~~taL~~Aa~~-----------g~~evv~lL~--~~ga~~~~~~----~~l~~A~~~g~~~  268 (376)
T 2aja_A          225 ---------------LAYAEIHEFEY-----------GEKYVNPFIA--RHVNRLKEMH----DAFKLSNPDGVFD  268 (376)
T ss_dssp             ---------------HHHHHHCTTTT-----------TTTTHHHHHH--HHHHHHHHHH----TTTTTTSSSSCCC
T ss_pred             ---------------cchHHHHHHHC-----------CCHHHHHHHH--hcCccccccc----HHHHHHHHCCChh
Confidence                           66888887322           2222333433  2334555544    4788888877543

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.84  E-value=1.6e-21  Score=163.10  Aligned_cols=104  Identities=20%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ..++..+++.++  |.++.+|||+|+|+|++|+|||+|||++|+||++                             ...
T Consensus        13 ~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~-----------------------------~~~   61 (119)
T 3m5b_A           13 PYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR-----------------------------RGQ   61 (119)
T ss_dssp             TTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC-----------------------------CEE
T ss_pred             CcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc-----------------------------CCC
Confidence            456677888886  6789999999999999999999999999999984                             135


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      .|.|+++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|++.+.
T Consensus        62 ~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~-----------------------v~~ll~aA~~l~i~~l~~~C~~~~~  116 (119)
T 3m5b_A           62 WALGEGISPSTFAQLLNFVYGESVELQPGE-----------------------LRPLQEAARALGVQSLEEACWRARG  116 (119)
T ss_dssp             EECCSSCCHHHHHHHHHHHTTCCEEECGGG-----------------------HHHHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             EEEeCCCCHHHHHHHHHHHcCCCcCcCHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            799999999999999999999999987544                       6789999999999999999998765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2.2e-20  Score=187.50  Aligned_cols=141  Identities=21%  Similarity=0.187  Sum_probs=113.3

Q ss_pred             CccccHHHHHHHhc-CCHHHHHHHHhcCCCCC-------CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          253 EDQKIRRMRRALDS-SDVELVKLMVMGEGLNL-------DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       253 ~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~d~-------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      +..+.|+||+|+.. |+.++++.|| +.|+|+       +|.||||+|+..|+.++|++||++|+ ++|.+| ..|+|||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga-dvn~~d-~~G~TpL  272 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA-NVNQAD-SAGRGPL  272 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCCC-CCCCCHH
Confidence            34568999999999 9999999999 666654       47899999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++.+|++.+..-...    
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~------------------~g~~~iv~lLl~~~~~~~~~----  330 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME------------------TANADIVTLLRLAKMREAEA----  330 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHHHC---------
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHH------------------CCCHHHHHHHHHcCCCcccc----
Confidence            99999999999999999999999999999999999998                  78999999999988432211    


Q ss_pred             CCCCCCCCccccCCCCCC
Q 010590          405 LNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       405 ~~~~~~~~~~~~tplh~a  422 (506)
                          ...+..+.|++++.
T Consensus       331 ----~~~~~~~~t~l~i~  344 (368)
T 3jue_A          331 ----AQGQAGDETYLDIF  344 (368)
T ss_dssp             ------------------
T ss_pred             ----cccCCCCCCHHHHH
Confidence                12245677888775

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=9.1e-22  Score=192.82  Aligned_cols=140  Identities=19%  Similarity=0.105  Sum_probs=112.0

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCc
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVNY------PAGPAGKTPLHIAAEM---VSPDMVAVLLDHHADPNVRTVDGVT  355 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~------~~~~~g~tpLh~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~t  355 (506)
                      +.++||.|+..|+.+.|+.|++.|+ +++.      .+ ..|+||||+|+..   |+.+++++|+++|+++|.+|..|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~-d~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQ-DFGQPLPGPDAQ-APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTC-CTTSCEECSSSC-SCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCC-cccccCCCcccC-CCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            5688999999999999999999999 9998      56 8999999999997   8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCC
Q 010590          356 PLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSG  435 (506)
Q Consensus       356 pLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~  435 (506)
                      |||+|+.                  .++.+++++|+++|++++.+           +..|.||||+|+...         
T Consensus       229 pLh~A~~------------------~g~~~~v~~Ll~~gad~~~~-----------d~~G~TpL~~A~~~~---------  270 (301)
T 2b0o_E          229 ALHYAAL------------------YNQPDCLKLLLKGRALVGTV-----------NEAGETALDIARKKH---------  270 (301)
T ss_dssp             HHHHHHH------------------TTCHHHHHHHHHTTCCCSCC-----------CTTSCCHHHHHHHHT---------
T ss_pred             HHHHHHH------------------cCCHHHHHHHHHcCCCCCCc-----------CCCCCCHHHHHHHcC---------
Confidence            9999998                  78999999999999999988           556779999984321         


Q ss_pred             CccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          436 SATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                        ...++.+++        ......|+||||+|+..|.+
T Consensus       271 --~~~iv~~Ll--------~~ga~~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          271 --HKECEELLE--------QAQAGTFAFPLHVDYSWVIS  299 (301)
T ss_dssp             --CHHHHHHHH--------HHHHHTTSSCCC--------
T ss_pred             --CHHHHHHHH--------HhcCCCCCChhHHHHhcCCc
Confidence              112222322        23334799999999999954

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=7.2e-21  Score=158.39  Aligned_cols=105  Identities=36%  Similarity=0.420  Sum_probs=80.8

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      |.+|+||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~d-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGA-DVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTC-CSSCCC-SSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCcC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            4567778888888888888888888877 777777 77888888888888888888888888888888888888888887


Q ss_pred             HHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          362 TLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       362 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      .                  .++.+++++|+++|++++.++..|.+
T Consensus        84 ~------------------~~~~~~~~~Ll~~ga~~n~~~~~~~~  110 (115)
T 2l6b_A           84 K------------------NGHHEIVKLLDAKGADVNARSWGSSH  110 (115)
T ss_dssp             T------------------TTCHHHHHHHHTTSSSHHHHSCCCC-
T ss_pred             H------------------CCCHHHHHHHHHcCCCCCcCCccccc
Confidence            6                  56777788888888888877665553

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=3.1e-20  Score=148.44  Aligned_cols=88  Identities=38%  Similarity=0.491  Sum_probs=81.8

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAE  329 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~  329 (506)
                      +|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +++.+| ..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~d-~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKD-KNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccC-CCCCCHHHHHHH
Confidence            4899999999999999999999 667655     58999999999999999999999999 999999 899999999999


Q ss_pred             hCCHHHHHHHHHCCCC
Q 010590          330 MVSPDMVAVLLDHHAD  345 (506)
Q Consensus       330 ~~~~~~v~~Ll~~ga~  345 (506)
                      .|+.+++++|+++||+
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=8e-21  Score=158.12  Aligned_cols=105  Identities=30%  Similarity=0.336  Sum_probs=95.9

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...|..|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +++.+| ..|+|||
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~d-~~g~tpl   79 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-DVNARS-KDGNTPE   79 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHT-TTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC-CTTCCC-TTCCCTT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-CCcccC-CCCCCHH
Confidence            346889999999999999999999999 667654     58999999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL  357 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpL  357 (506)
                      |+|+..|+.+++++|+++|+++|.++..|.||-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999999999999999999999984

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.80  E-value=1.8e-21  Score=196.03  Aligned_cols=124  Identities=12%  Similarity=0.053  Sum_probs=110.0

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCC-----C--CChHHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLN-----L--DEALALHYAVENCSREVVKALLELGAADVNY--PAGPAGK  321 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d-----~--~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~--~~~~~g~  321 (506)
                      ..+..|.||||+||..|+.++|++|+ +.|+|     +  .++||||+|+..|+.++|++|+++|+ +++.  .| ..|+
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll-~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga-~~~~~~~d-~~g~  199 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP-TEATAMIQ-AENY  199 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHH-HSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCG-GGHHHHHH-HHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHH-hCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-ccchhccC-CCCC
Confidence            44667899999999999999999999 67753     2  24899999999999999999999999 9887  77 7899


Q ss_pred             hHHHHHH-HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          322 TPLHIAA-EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       322 tpLh~A~-~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      ||||+|+ ..|+.++|++|+++|++       |.||||+|+.                  .++.+++++|++.|++++.+
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~------------------~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFE------------------YGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTT------------------TTTTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHH------------------CCCHHHHHHHHhcCcccccc
Confidence            9999999 99999999999998853       8999999987                  78889999999999999877


Q ss_pred             cc
Q 010590          401 EE  402 (506)
Q Consensus       401 ~~  402 (506)
                      +.
T Consensus       255 ~~  256 (376)
T 2aja_A          255 HD  256 (376)
T ss_dssp             HT
T ss_pred             cH
Confidence            54

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=1.8e-18  Score=167.40  Aligned_cols=143  Identities=17%  Similarity=0.113  Sum_probs=118.8

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHh---cC---CCCC-----------------------------CChHHHHHHHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVM---GE---GLNL-----------------------------DEALALHYAVE  294 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~---~~d~-----------------------------~g~t~Lh~A~~  294 (506)
                      ...|..+.++++++...|+..+.+++..   ..   ..+.                             ...++|+.|+.
T Consensus        60 ~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~  139 (278)
T 1dcq_A           60 LTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVK  139 (278)
T ss_dssp             TTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhh
Confidence            4467778888999988888777666541   00   0000                             01479999999


Q ss_pred             cCCHHHHHHHHHcCCCCCC------CCCCCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHH
Q 010590          295 NCSREVVKALLELGAADVN------YPAGPAGKTPLHIAAEM---VSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTS  365 (506)
Q Consensus       295 ~g~~~~v~~Ll~~g~~~v~------~~~~~~g~tpLh~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~  365 (506)
                      .|+.+.++.+++.|+ +++      ..+ ..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+.   
T Consensus       140 ~~d~~~~~~ll~~g~-~~~~~~~l~~~~-~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~---  214 (278)
T 1dcq_A          140 TRDIFGLLQAYADGV-DLTEKIPLANGH-EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL---  214 (278)
T ss_dssp             TTCHHHHHHHHHTTC-CTTSBCCCSSCS-STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHH---
T ss_pred             hcccHHHHHHHHhhc-chhhhccccccc-cCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHH---
Confidence            999999999999999 854      446 7999999999999   89999999999999999999999999999998   


Q ss_pred             HHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          366 DFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                                     .++.+++++|+++|++++.+           +..|.||||+|+
T Consensus       215 ---------------~g~~~~v~~Ll~~gad~~~~-----------d~~g~tpL~~A~  246 (278)
T 1dcq_A          215 ---------------TDNAECLKLLLRGKASIEIA-----------NESGETPLDIAK  246 (278)
T ss_dssp             ---------------TTCHHHHHHHHHTTCCTTCC-----------CTTSCCHHHHHH
T ss_pred             ---------------cCCHHHHHHHHHcCCCCCCc-----------cCCCCCHHHHHH
Confidence                           78999999999999999987           456668888873

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=1.6e-18  Score=173.94  Aligned_cols=149  Identities=20%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             CCChHHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCC-CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 010590          283 LDEALALHYAVEN-CSREVVKALLELGAADVNYPAG-PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL  360 (506)
Q Consensus       283 ~~g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~v~~~~~-~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A  360 (506)
                      ..+.|+||+|+.. |+.++++.||+.|+ ++|..+. ..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGA-DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTC-CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCC-CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3578999999999 99999999999999 9998862 5899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccc
Q 010590          361 RTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATIN  440 (506)
Q Consensus       361 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~  440 (506)
                      +.                  .++.+++++|+++|++++.+           +..|.||||+|+....           ..
T Consensus       276 ~~------------------~g~~~~v~~LL~~Gad~~~~-----------d~~G~TpL~~A~~~g~-----------~~  315 (368)
T 3jue_A          276 TI------------------LGHTGLACLFLKRGADLGAR-----------DSEGRDPLTIAMETAN-----------AD  315 (368)
T ss_dssp             HH------------------HTCHHHHHHHHHTTCCTTCC-----------CTTSCCHHHHHHHTTC-----------HH
T ss_pred             HH------------------cCcHHHHHHHHHCcCCCCCc-----------CCCCCCHHHHHHHCCC-----------HH
Confidence            98                  68899999999999999988           5567799999843221           12


Q ss_pred             ccccccC-CCcceeeccCCCCCCCcchhhhhcC
Q 010590          441 NNSLNLD-SSRLVYLNLGAGTGNSAHHHHHQMG  472 (506)
Q Consensus       441 ~~~~~~~-~~~~~~ln~~D~~G~T~LH~Aa~~g  472 (506)
                      ++.++.. ..+....+..+..|.|+|+++....
T Consensus       316 iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          316 IVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHHHHHC-----------------------
T ss_pred             HHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            2222211 0223455667788999999998776

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.76  E-value=2.4e-19  Score=188.13  Aligned_cols=108  Identities=20%  Similarity=0.173  Sum_probs=100.5

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCC------CCCCCChHHHHHHH---hCCHHHHHHHHHCCCCCCCCCCCCCc
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVNYP------AGPAGKTPLHIAAE---MVSPDMVAVLLDHHADPNVRTVDGVT  355 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~------~~~~g~tpLh~A~~---~~~~~~v~~Ll~~ga~~~~~d~~g~t  355 (506)
                      ..+.||.|+..|+.++|+.||+.|+ ++|..      + ..|+||||+|+.   .|+.+++++|+++|+|+|.+|..|+|
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~-~~n~~~~~~~~~-~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~T  209 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQ-DFGQPLPGPDAQ-APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT  209 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTC-CSSSCBCCSSSC-CSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCC
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhcc-cccCCCCCcccc-cccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCc
Confidence            4578999999999999999999999 99987      6 799999999977   99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          356 PLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       356 pLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      |||+|+.                  .++.+++++|+++|||++.+           +..|.||||+|+
T Consensus       210 pLh~A~~------------------~g~~~~v~~Ll~~ga~~~~~-----------d~~g~tpl~~A~  248 (497)
T 3lvq_E          210 ALHYAAL------------------YNQPDCLKLLLKGRALVGTV-----------NEAGETALDIAR  248 (497)
T ss_dssp             HHHHHTT------------------TTCHHHHHHHHHTCCCCSCC-----------CTTCCCHHHHHH
T ss_pred             HHHHHHH------------------cCCHHHHHHHHHcCCCCCCc-----------CCCCCCHHHHHH
Confidence            9999997                  78999999999999999998           556779999984

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=4.8e-18  Score=140.22  Aligned_cols=80  Identities=31%  Similarity=0.344  Sum_probs=70.7

Q ss_pred             CCCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 010590          281 LNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDIL  360 (506)
Q Consensus       281 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A  360 (506)
                      .+.+|.||||+|+..|+.+++++|++.|+ ++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~i~~~d-~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGA-DVAAKD-KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCC-CCCccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            45578899999999999999999999998 999888 8999999999999999999999999999999999999999999


Q ss_pred             HH
Q 010590          361 RT  362 (506)
Q Consensus       361 ~~  362 (506)
                      +.
T Consensus        98 ~~   99 (110)
T 2zgd_A           98 ID   99 (110)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=9.7e-17  Score=132.32  Aligned_cols=91  Identities=26%  Similarity=0.400  Sum_probs=78.4

Q ss_pred             ccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 010590          246 AAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAG  320 (506)
Q Consensus       246 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g  320 (506)
                      .......|.+|.||||+|+..|+.+++++|+ +.|+++     +|+||||+|+..|+.+++++|+++|+ +++.+| ..|
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d-~~g   90 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQD-KFG   90 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTS
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-Cccccc-cCC
Confidence            3445567889999999999999999999999 566654     58999999999999999999999999 999999 899


Q ss_pred             ChHHHHHHHhCCHHHHHHH
Q 010590          321 KTPLHIAAEMVSPDMVAVL  339 (506)
Q Consensus       321 ~tpLh~A~~~~~~~~v~~L  339 (506)
                      +||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999987

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.12  E-value=1.3e-10  Score=92.62  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=46.1

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCC--CCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhh
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCG--PDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFL  103 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~  103 (506)
                      |+++. +|++|++||.| |++|+||++||.+  ++.|+                    ....|+|++|++.+++.+++|+
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~--------------------~~~~I~l~~V~~~iL~kViey~   62 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN--------------------ETNEVNFREIPSHVLSKVCMYF   62 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC----------------------------CEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCcccc--------------------CCCceECCCCCHHHHHHHHHHH
Confidence            55655 78999999999 9999999999986  45554                    3578999999999999999999


Q ss_pred             h
Q 010590          104 Y  104 (506)
Q Consensus       104 Y  104 (506)
                      |
T Consensus        63 ~   63 (97)
T 4ajy_C           63 T   63 (97)
T ss_dssp             H
T ss_pred             H
Confidence            9

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=98.81  E-value=1.1e-08  Score=87.43  Aligned_cols=120  Identities=17%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|+. +|++|.+||.+ |.+|++|++||.+..                        ...|+|++|++.+++.+++|+|+
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~------------------------~~~Ipl~~V~~~iL~kVieyc~~   58 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG------------------------MDPVPLPNVNAAILKKVIQWCTH   58 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC------------------------CSSEECTTCCHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC------------------------CCceecCCcCHHHHHHHHHHHHH
Confidence            67766 88999999998 899999999997521                        14699999999999999999999


Q ss_pred             cceeccCCCC---------CCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010590          106 GQVSIVPQKH---------EPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKV  176 (506)
Q Consensus       106 g~~~~~~~~~---------~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~~  176 (506)
                      ..-...+...         .+..--.+|+.  +    ....+.+|+.||..+++..|..+|.+.+.+.++..+.+.+...
T Consensus        59 h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~--v----d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~  132 (141)
T 1fs1_B           59 HKDDPPPPEDDENKEKRTDDIPVWDQEFLK--V----DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKT  132 (141)
T ss_dssp             HTTCC-----------------HHHHHHTC--S----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hccCCCccccccccccchhhhhHHHHHHHh--C----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            7633211100         00000001111  0    1244689999999999999999999999988877666665544


Q ss_pred             H
Q 010590          177 L  177 (506)
Q Consensus       177 L  177 (506)
                      +
T Consensus       133 f  133 (141)
T 1fs1_B          133 F  133 (141)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.68  E-value=4.2e-09  Score=92.03  Aligned_cols=122  Identities=11%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|+. +|+.|.+||.| |.+|+||++||.+..                       ....|+|++|++.+++.|++|+|+
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~-----------------------~~~~Ipl~~V~~~iL~kVieyc~~   61 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC-----------------------VDNGVPLPNVTSKILAKVIEYCKR   61 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC-----------------------------------CCTTSCHHHHHHHHHC---
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC-----------------------CCCceeCCcCcHHHHHHHHHHHHH
Confidence            66664 79999999999 899999999997642                       124799999999999999999999


Q ss_pred             cceeccCCC----------CCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010590          106 GQVSIVPQK----------HEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMK  175 (506)
Q Consensus       106 g~~~~~~~~----------~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~  175 (506)
                      ..-...+..          ..+..--.+|+.  +    ....+.+|+.||..+++..|..+|.+.+...++..+.+.+..
T Consensus        62 h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~--v----d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~  135 (160)
T 2p1m_A           62 HVEAAASKAEAVEGAATSDDDLKAWDADFMK--I----DQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRT  135 (160)
T ss_dssp             ---------------------------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred             cccCCCcccccccccccccchhhHHHHHHHc--C----CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            874321100          000000011111  0    123458899999999999999999999998887777777666


Q ss_pred             HHH
Q 010590          176 VLI  178 (506)
Q Consensus       176 ~L~  178 (506)
                      .+.
T Consensus       136 ~f~  138 (160)
T 2p1m_A          136 TFN  138 (160)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            554

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.03  E-value=3.5e-05  Score=62.10  Aligned_cols=97  Identities=18%  Similarity=0.268  Sum_probs=73.2

Q ss_pred             EEEEECCeEEeeeehhhcccC-HHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSVEGRLVHAHRCILAARS-LFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S-~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|.|||+.|...+..|+... .+|.+||.+...-..     .+.           ...++-+ +-+|..|+.||+|+.+
T Consensus         8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~-----~~d-----------~~~~~fi-DRdp~~F~~IL~~lr~   70 (107)
T 3drz_A            8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDS-----DKD-----------ETGAYLI-DRDPTYFGPVLNYLRH   70 (107)
T ss_dssp             EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGG-----GBC-----------TTSCEEE-CSCHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCc-----CCC-----------CCceEEe-cCChHHHHHHHHHhCC
Confidence            678899999999999998765 578999876421000     000           1244555 6799999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      |++.+....      |                ...+++.|..|+++.|.++|++++.
T Consensus        71 g~l~~p~~~------~----------------~~~l~~Ea~fy~l~~L~~~l~~~i~  105 (107)
T 3drz_A           71 GKLVINKDL------A----------------EEGVLEEAEFYNITSLIKLVKDKIR  105 (107)
T ss_dssp             SCCCCCTTS------C----------------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CeeCCCCCC------C----------------HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            998775432      1                2468899999999999999998765

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.02  E-value=2e-05  Score=62.49  Aligned_cols=90  Identities=19%  Similarity=0.217  Sum_probs=64.5

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+++. +|.+|.++|.+ |.+|.+++.||.+++ |.                    ....|+|++|+..+++.+++|+|.
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~--------------------~~~~Iplp~V~~~iL~kVieyc~~   63 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RE--------------------SKGRIELKQFDSHILEKAVEYLNY   63 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TT--------------------CTTEEEETTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-cc--------------------CCCceecCCcCHHHHHHHHHHHHH
Confidence            66766 89999999997 899999999998765 32                    236899999999999999999998


Q ss_pred             cceeccCC--CCCCcCCccccCccCccchhHHHHHHHHHHHHHhhC
Q 010590          106 GQVSIVPQ--KHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFG  149 (506)
Q Consensus       106 g~~~~~~~--~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~  149 (506)
                      -.-...+.  ...+    .++   .+    ....+.+|+.||..++
T Consensus        64 h~~~~~~~~~~~~i----~~w---~v----d~~~lfeLi~AAnyLd   98 (99)
T 1hv2_A           64 NLKYSGVSEDDDEI----PEF---EI----PTEMSLELLLAADYLS   98 (99)
T ss_dssp             HHHHHHHCSSCSSC----CCC---CC----CHHHHHHHHHHHHHHC
T ss_pred             hcccCCCccccccC----CCc---cC----CHHHHHHHHHHHHHhC
Confidence            65222110  0000    011   11    1355688999998875

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.00  E-value=1e-05  Score=63.81  Aligned_cols=90  Identities=18%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCC-C-CCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhh
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGP-D-PPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFL  103 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~  103 (506)
                      |+++. +|.+|.++|.+ |.+|.+++.||.+. . .|+                    ....|+|++|+..+++.+++|+
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~--------------------~~~~Ipl~~V~~~iL~kVieyc   61 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN--------------------ETNEVNFREIPSHVLSKVCMYF   61 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC----------------------------CEEECSSCCHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccc--------------------cCCceeCCCCCHHHHHHHHHHH
Confidence            56665 89999999997 89999999999752 2 332                    2468999999999999999999


Q ss_pred             hccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhC
Q 010590          104 YSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFG  149 (506)
Q Consensus       104 Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~  149 (506)
                      |.-.-..... ..+    .++   .+.    ...+.+|+.||..++
T Consensus        62 ~~h~~~~~~~-~~i----~~w---~vd----~~~l~eLi~AAnyLd   95 (96)
T 2fnj_C           62 TYKVRYTNSS-TEI----PEF---PIA----PEIALELLMAANFLD   95 (96)
T ss_dssp             HHHHHHHSCC-SCC----CCC---CCC----TTTHHHHHHHHHHHT
T ss_pred             HHccccCCCc-ccC----CCc---ccC----HHHHHHHHHHHHHhC
Confidence            9855221110 000    011   111    134678999998875

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=97.87  E-value=8.2e-05  Score=65.15  Aligned_cols=130  Identities=19%  Similarity=0.238  Sum_probs=86.5

Q ss_pred             eEEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhh
Q 010590           26 DVTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLY  104 (506)
Q Consensus        26 Dv~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Y  104 (506)
                      -|+|+. +|..|.+++.+ |.+|.+++.|+.+...+.. ..               .....|+|++|+..+++.|++|+|
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~-~~---------------~~~~~IplpnV~s~iL~kVieyc~   70 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDD-ED---------------DDEIVMPVPNVRSSVLQKVIEWAE   70 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC---------------------------CEEECTTCCHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccc-cc---------------cCCCceeeCCCCHHHHHHHHHHHH
Confidence            466655 78999999998 6889999999975322100 00               013679999999999999999999


Q ss_pred             ccceeccCC--------CCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 010590          105 SGQVSIVPQ--------KHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLANMVEKASIEDVMKV  176 (506)
Q Consensus       105 tg~~~~~~~--------~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~~l~~~~~~~v~~~  176 (506)
                      .-.-...+.        ...+..--.+|+.  +    ....+.+|+.||..+++..|..++.+.+...++..+.+.+...
T Consensus        71 ~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~--v----d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~  144 (169)
T 3v7d_A           71 HHRDSNFPDEDDDDSRKSAPVDSWDREFLK--V----DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRT  144 (169)
T ss_dssp             HTTTCCCCC--------CCCCCHHHHHHTC--S----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HcccCCCcccccccccccccccHHHHHHHc--C----CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            865332111        0000000011221  1    1245689999999999999999999999888877777766655


Q ss_pred             HH
Q 010590          177 LI  178 (506)
Q Consensus       177 L~  178 (506)
                      +.
T Consensus       145 f~  146 (169)
T 3v7d_A          145 FN  146 (169)
T ss_dssp             HT
T ss_pred             cC
Confidence            43

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.07  E-value=0.00052  Score=55.48  Aligned_cols=90  Identities=19%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCC--CCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhh
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGP--DPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFL  103 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~  103 (506)
                      |+|+- +|.+|.+.|.+ |..|..++.|+.+.  +.|.                    ....|+|++|+..+++.+++|+
T Consensus        19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~--------------------~~~~IplpnV~s~iL~kVieyc   77 (112)
T 1vcb_B           19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN--------------------ETNEVNFREIPSHVLSKVCMYF   77 (112)
T ss_dssp             EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC----------------------------CEEECSSCCHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccc--------------------cCCceeCCCCCHHHHHHHHHHH
Confidence            66663 89999999995 68999999999752  2222                    2368999999999999999999


Q ss_pred             hccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhC
Q 010590          104 YSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFG  149 (506)
Q Consensus       104 Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~  149 (506)
                      |.-.-..... ..+    .+|   .+    ....+.+|+.||..++
T Consensus        78 ~~h~~~~~~~-~~i----~~w---~v----d~~~lfeLi~AAnyLd  111 (112)
T 1vcb_B           78 TYKVRYTNSS-TEI----PEF---PI----APEIALELLMAANFLD  111 (112)
T ss_dssp             HHHHHHSSCS-SCC----CCC---CC----CHHHHHHHHHHHHHHT
T ss_pred             HHhhhccCCc-CCC----CCc---cc----CHHHHHHHHHHHHHhC
Confidence            8754321110 011    011   11    1355788999998875

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=96.78  E-value=0.0047  Score=54.87  Aligned_cols=97  Identities=18%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             EEEEECCeEEeeeehhhcccC-HHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSVEGRLVHAHRCILAARS-LFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S-~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|.|||+.|..-+..|.... .+|.+||.+...-..   .  ++           ....+-+ |-+|..|+.||+|+.+
T Consensus        14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~---~--~D-----------e~geyFI-DRDP~~F~~ILnyLRt   76 (202)
T 3drx_A           14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDS---D--KD-----------ETGAYLI-DRDPTYFGPVLNYLRH   76 (202)
T ss_dssp             EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC---------BC-----------TTCCEEE-CSCSTTHHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCc---c--cC-----------CCccEEe-cCChHHHHHHHHHhcC
Confidence            677899999999999997654 478899876421000   0  00           1244555 5689999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      |++.+....      |                ...++..|..|+++.|...|++.+.
T Consensus        77 G~L~lP~~~------~----------------~~~l~eEA~FygL~~Lv~~l~~~i~  111 (202)
T 3drx_A           77 GKLVINKDL------A----------------EEGVLEEAEFYNITSLIKLVKDKIR  111 (202)
T ss_dssp             SCCCCCTTS------C----------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccCCCCCC------C----------------HHHHHHHHHHCCcHHHHHHHHHHHH
Confidence            999876443      1                2458899999999999999988875

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=93.74  E-value=0.067  Score=43.16  Aligned_cols=84  Identities=13%  Similarity=0.131  Sum_probs=58.4

Q ss_pred             EEEEECCeEEeeeehhhcccCH-HHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSVEGRLVHAHRCILAARSL-FFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S~-yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|.|||+.|..-+..|..... ++.+||.+....                   ......+-+ +-+|..|+.||.|+.+
T Consensus         7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~-------------------~~~~g~~Fi-DRdp~~F~~ILnylR~   66 (115)
T 3kvt_A            7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNY-------------------DPVLNEYFF-DRHPGVFAQIINYYRS   66 (115)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTE-------------------ETTTTEEEE-CSCTTTHHHHHHHHHH
T ss_pred             EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCC-------------------CCCCCcEEE-ecChHHHHHHHHHhcC
Confidence            7889999999999999975532 344454431100                   002345655 5689999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQ  152 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~  152 (506)
                      |++.+....      |                ...+++.|..|+++.
T Consensus        67 G~l~~p~~~------~----------------~~~~~~Ea~fy~i~~   91 (115)
T 3kvt_A           67 GKLHYPTDV------C----------------GPLFEEELEFWGLDS   91 (115)
T ss_dssp             SCBCCCSSS------C----------------HHHHHHHHHHHTCCG
T ss_pred             CCCCCCCcc------c----------------HHHHHHHHHHhCCCh
Confidence            998776442      1                346888999998854

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=91.74  E-value=0.32  Score=39.66  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=57.7

Q ss_pred             eEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           26 DVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        26 Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      =|+|.|||+.|..-+..|....   ..||..  .+.      . .+.       ......+-+ +=+|..|+.||.|+-+
T Consensus        14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~--~~~------~-~~~-------~~~~g~~Fi-DRdp~~F~~ILnflR~   73 (124)
T 1s1g_A           14 LIVLNVSGRRFQTWRTTLERYP---DTLLGS--TEK------E-FFF-------NEDTKEYFF-DRDPEVFRCVLNFYRT   73 (124)
T ss_dssp             EEEEEETTEEEEEEHHHHTTST---TSSTTS--SGG------G-GTB-------CSSSCSEEE-CSCHHHHHHHHHHHHH
T ss_pred             EEEEEeCCEEEEEeHHHHhcCC---Cceecc--cCC------c-ccc-------cCCCCcEEE-cCChHHHHHHHHHHhc
Confidence            3778899999999999996532   223322  100      0 000       012345555 4599999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQL  153 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l  153 (506)
                      |++.+....      |                ...+.+.|+.|+++.+
T Consensus        74 G~l~~p~~~------~----------------~~~l~~Ea~fy~i~~l   99 (124)
T 1s1g_A           74 GKLHYPRYE------C----------------ISAYDDELAFYGILPE   99 (124)
T ss_dssp             SCBCCCTTS------C----------------HHHHHHHHHHTTCCGG
T ss_pred             CCCCCCCCc------C----------------HHHHHHHHHHcCCChH
Confidence            998765432      1                3568899999999765

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=89.51  E-value=0.18  Score=39.52  Aligned_cols=85  Identities=11%  Similarity=-0.005  Sum_probs=55.9

Q ss_pred             EEEEECCeEEeeeehhhcccC-HHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSVEGRLVHAHRCILAARS-LFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S-~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|.|||+.|...+..|+..- ..+.+|+....           ...        ....++-+ +-+|..|+.||.|+-|
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~-----------~~~--------~~~~eyFi-DRdp~~F~~ILnflR~   62 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNR-----------YYD--------PLRNEYFF-DRNRPSFDAILYFYQS   62 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGG-----------GEE--------TTTTEEEE-CSCSTTHHHHHHHHHT
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhcccc-----------ccC--------CCceeEEE-cCChHHHHHHHHHHhc
Confidence            688999999999999995421 11222221100           000        01345555 5689999999999999


Q ss_pred             -cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHH
Q 010590          106 -GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQL  153 (506)
Q Consensus       106 -g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l  153 (506)
                       |++.+....      |                ...+.+.|..|+++.+
T Consensus        63 ~G~l~~p~~~------~----------------~~~~~~Ea~fy~i~~~   89 (100)
T 1t1d_A           63 GGRLRRPVNV------P----------------LDVFSEEIKFYELGEN   89 (100)
T ss_dssp             TSCCCCCTTS------C----------------HHHHHHHHHHTTCCHH
T ss_pred             CCcccCCCCC------C----------------HHHHHHHHHHcCCCHH
Confidence             898765442      1                3568899999998654

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=87.69  E-value=0.5  Score=39.40  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=57.5

Q ss_pred             eEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           26 DVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        26 Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      =|+|.|||+.|..-+..|....   ..||...  +.      . ...       ......+-+ |=++..|+.||+|+-+
T Consensus        36 ~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~--~~------~-~~~-------~~~~g~yFi-DRdp~~F~~ILnflR~   95 (140)
T 2nz0_B           36 LIVLNVSGRRFQTWRTTLERYP---DTLLGST--EK------E-FFF-------NEDTKEYFF-DRDPEVFRCVLNFYRT   95 (140)
T ss_dssp             EEEEEETTEEEEEEHHHHHTCT---TSTTTSG--GG------G-GSE-------ETTTTEEEE-CSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEeeHHHHhcCC---Ceeeccc--CC------c-ccc-------cCCCCeEEE-eCCcHHHHHHHHHHhc
Confidence            4778899999999999996432   2233320  00      0 000       002345656 4599999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQL  153 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l  153 (506)
                      |++.+....      |                ...+.+.|+.|+++.+
T Consensus        96 G~l~~p~~~------~----------------~~~l~eEa~fy~i~~l  121 (140)
T 2nz0_B           96 GKLHYPRYE------C----------------ISAYDDELAFYGILPE  121 (140)
T ss_dssp             SSBCCCTTS------C----------------HHHHHHHHHHHTCCGG
T ss_pred             CCcCCCCCc------C----------------HHHHHHHHHHcCCChH
Confidence            998765442      1                3568899999999765

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=82.20  E-value=0.59  Score=36.87  Aligned_cols=85  Identities=13%  Similarity=0.171  Sum_probs=56.5

Q ss_pred             EEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhcc
Q 010590           27 VTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSG  106 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Ytg  106 (506)
                      |+|.|||+.|..-+..|.....   .||.. . +..    ...          ......+-+ +=+|..|+.||+|+-+|
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~-~-~~~----~~~----------~~~~~~~Fi-DRdp~~F~~ILnflR~g   61 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPD---TLLGS-S-ERD----FFY----------HPETQQYFF-DRDPDIFRHILNFYRTG   61 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCS---SSTTS-G-GGG----GGE----------EGGGTEEEE-CSCTTTHHHHHHHHHHS
T ss_pred             EEEEECCEEEEEeHHHHhcCCC---ccccc-c-CCc----ccc----------cCCCCcEEE-eCCcHHHHHHHHHHhcC
Confidence            7899999999999999965322   23322 1 000    000          002345555 44899999999999999


Q ss_pred             ceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHH
Q 010590          107 QVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQL  153 (506)
Q Consensus       107 ~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l  153 (506)
                      ++.+....      |                ...+.+.|+.|+++.+
T Consensus        62 ~l~~p~~~------~----------------~~~l~~Ea~fy~i~~l   86 (105)
T 1nn7_A           62 KLHYPRHE------C----------------ISAYDEELAFFGLIPE   86 (105)
T ss_dssp             CBCCCTTS------C----------------HHHHHHHHHHHTCCSC
T ss_pred             CCCCCCCc------C----------------HHHHHHHHHHcCCCHH
Confidence            98765432      1                3568899999999664

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.61  E-value=4.6  Score=31.48  Aligned_cols=48  Identities=19%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             chhHHHHH-----HHHHHHHHhhCH---------HHHHHHHHHHHHHHHhh------hhHHHHHHHHH
Q 010590          131 CTSAVDLA-----LDTLAAARYFGV---------EQLALLTQKQLANMVEK------ASIEDVMKVLI  178 (506)
Q Consensus       131 c~~~~~~~-----~~L~~~A~~~~~---------~~l~~l~~~~l~~~l~~------~~~~~v~~~L~  178 (506)
                      |+++..+|     .+|...|..|..         ++|..+..+.+..++++      ..++.++.|+.
T Consensus        13 Cl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sdv~~E~~vf~av~~Wv~   80 (105)
T 2eqx_A           13 CLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDGVPCSQNPTEAIEAWIN   80 (105)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTCEETTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            78877776     677777777766         45555666666666543      24556666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	506
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	3e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 4e-13
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A       +VK LL+ GA   N       +TPLH+AA     ++   LL + A  N
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGA-SPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 348 VRTVDGVTPLDI 359
            +  D  TPL  
Sbjct: 61  AKAKDDQTPLHC 72

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 268 DVELVKLMVMGEGLNLDEA-----LALHYAVENCSREVVKALLELGAADVNYPAGPAGKT 322
            + +VK ++   G + + +       LH A      EV K LL+  A  VN  A    +T
Sbjct: 12  HLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAK-DDQT 68

Query: 323 PLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP 356
           PLH AA +   +MV +LL+++A+PN+ T  G TP
Sbjct: 69  PLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 7e-08
 Identities = 26/110 (23%), Positives = 36/110 (32%), Gaps = 33/110 (30%)

Query: 282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPA---------------------- 319
           N      LH   +     V   L++ G   V+                            
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGYTPLHVASHYGNIKLVKFLLQH 319

Query: 320 ----------GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
                     G +PLH AA+    D+V +LL + A PN  + DG TPL I
Sbjct: 320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 7e-08
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A +     V + LLE  A   N  AG  G TPLH+A    + D+V +LL     P+
Sbjct: 135 PLHVAAKYGKVRVAELLLERDA-HPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192

Query: 348 VRTVDGVTPLDI 359
               +G TPL I
Sbjct: 193 SPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVL---LDHHA 344
            LH A +    ++V  LL+ G A  N  +   G TPL IA  +    +  VL    D  +
Sbjct: 333 PLHQAAQQGHTDIVTLLLKNG-ASPNEVSS-DGTTPLAIAKRLGYISVTDVLKVVTDETS 390

Query: 345 DPNVRTVDGVT 355
              V     ++
Sbjct: 391 FVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 235 HHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMV-MGEGLNL---DEALALH 290
           H           A+ A +  +    +  A     V + +L++      N    +    LH
Sbjct: 111 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 170

Query: 291 YAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRT 350
            AV + + ++VK LL  G    + PA   G TPLHIAA+    ++   LL +    N  +
Sbjct: 171 VAVHHNNLDIVKLLLPRG-GSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAES 228

Query: 351 VDGVTPLDI 359
           V GVTPL +
Sbjct: 229 VQGVTPLHL 237

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 322 TPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPL 357
           TPLH+A+ M    +V  LL   A PNV  V   TPL
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL 37

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 271 LVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM 330
           L++        ++     LH A +    E+V     L           +G TPLH+ A+ 
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL--LLSKQANGNLGNKSGLTPLHLVAQE 274

Query: 331 VSPDMVAVLLDHHADPNVRTVDGVTPL 357
               +  VL+ H    +  T  G TPL
Sbjct: 275 GHVPVADVLIKHGVMVDATTRMGYTPL 301

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 7e-11
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            L  AVE     +V+ LLE    ++N      GKT L +A E+    +  +L    A  +
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKLKKIAELLCKRGASTD 280

Query: 348 VR 349
             
Sbjct: 281 CG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 5e-08
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 283 LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDH 342
           +++   L  AV+N   ++V+ LLE GA +VN+     G TPLH A +M   D+V +LL H
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 343 H 343
            
Sbjct: 62  G 62

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 235 HHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVE 294
               +       AA            +R  + +     K     E L    A AL  A E
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR--KTKEDQERLRKGGATALMDAAE 157

Query: 295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV---LLDHHADPNVRTV 351
               EV+K LL+   ADVN          +H        D+ A+   LLDH AD NVR  
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217

Query: 352 DGVTPLDI 359
            G TPL +
Sbjct: 218 RGKTPLIL 225

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 233 ISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEA------ 286
                + +    +      L       +  A +   VE++K+++   G +++        
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 287 ---LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
               AL  + ++    +   LL+ GA DVN   G  GKTPL +A E     +V  LL+  
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGA-DVNVR-GERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 344 -ADPNVRTVDGVTPLDI 359
             + N    DG T L +
Sbjct: 243 HIEINDTDSDGKTALLL 259

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 2/126 (1%)

Query: 234 SHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAV 293
                    +       D+E  +    R  L  +   L    +           ALH A 
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207

Query: 294 ENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDG 353
                EV+K L++    DVN      G TPLH AA     +   +L+++  D       G
Sbjct: 208 AKGYTEVLKLLIQ-ARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 354 VTPLDI 359
            T  D+
Sbjct: 266 QTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A      E  + L+E    D+       G+T   +A E    D++  L +     N
Sbjct: 235 PLHAAAHWGKEEACRILVENLC-DMEA-VNKVGQTAFDVADE----DILGYLEELQKKQN 288

Query: 348 V 348
           +
Sbjct: 289 L 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 12/40 (30%), Positives = 15/40 (37%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
                  A      + V  LL+  AD N   VDG+T L  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ 79

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 251 DLEDQKIRR---MRRALDSSDVELVKLMVMGEG-LNLDEALALHYAVENCSREVVKALLE 306
            + D K +R   ++R + S       ++   +  +  D+      A  +   E V  LLE
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE 61

Query: 307 LGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTP 356
            G AD+NY A   G T LH A    + DMV  L+++ A+ N    +G  P
Sbjct: 62  RG-ADINY-ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 233 ISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKL-MVMGEGLNLDEALALHY 291
           +      +   L                +  LD     +VK      +    ++    + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 292 AVENCSREVVKALLELGAADVNYPAGPA-GKTPLHIAAEMVSPDMVAVLLDHHADPNVRT 350
                   +++ L           A  + G T L+IAA + +  +V  LLD+ ADP +  
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 289

Query: 351 VDGVTPLD 358
             G+ P+D
Sbjct: 290 KSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 285 EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
                H + ++  +EV  A       ++N P    G TPLH    + + ++V  L+ H +
Sbjct: 73  NQQQQHVSFDSLLQEVNDAFPNTQL-NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS 131

Query: 345 DPNVRTVDGVTP 356
           +       G + 
Sbjct: 132 NRLYGDNMGESC 143

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 17/163 (10%)

Query: 166 EKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEDLRHKS 225
           +  + E ++  L      +     T   H++  SG+     A    ++++      +   
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 226 SLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDE 285
            +   +       +  +     +  +  D K   +   L++ D               + 
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLK-WIIANMLNAQDS--------------NG 259

Query: 286 ALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAA 328
              L+ A    +  +V ALL+ GA D       +G  P+   A
Sbjct: 260 DTCLNIAARLGNISIVDALLDYGA-DPFIANK-SGLRPVDFGA 300

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 3e-09
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 20/105 (19%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L  LN L +    +DV   V      AH+ +L A S  F   F                 
Sbjct: 13  LLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD--------------- 57

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHE 116
                      + +     +  E F +LL F+Y+ ++++      
Sbjct: 58  -----QLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIM 97

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.7 bits (122), Expect = 7e-08
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 1/125 (0%)

Query: 235 HHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVE 294
                +        A +    ++   +  ++             +        ALHYA +
Sbjct: 137 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 196

Query: 295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGV 354
             +  +VK L+    ++        GKTP+ +AA+    ++V  L+   A          
Sbjct: 197 VSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH 255

Query: 355 TPLDI 359
           T   +
Sbjct: 256 TARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 9e-07
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLL 340
            +  A +    EVV  L++ GA  V         T   +A      ++V +  
Sbjct: 224 PIMLAAQEGRIEVVMYLIQQGA-SVEA-VDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 287 LALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH--- 343
           + LH      S  + + +       VN       +T LH  A   S +    L+ H    
Sbjct: 4   IKLHTEAAG-SYAITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 344 -----ADPNVRTVDGVTPL 357
                AD N    D  TPL
Sbjct: 60  CIAAGADVNAMDCDENTPL 78

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 27/153 (17%), Positives = 41/153 (26%), Gaps = 48/153 (31%)

Query: 12  LDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRI 71
           L   N +       DV   V+ +  HAHR +LA  S  F   F        LD  +    
Sbjct: 16  LCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSP--- 72

Query: 72  NQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHC 131
                                 + F  +L++ Y+  +                       
Sbjct: 73  ----------------------KTFQQILEYAYTATLQAKA------------------- 91

Query: 132 TSAVDLALDTLAAARYFGVEQLALLTQKQLANM 164
               +   D L AA    +E L     K L  +
Sbjct: 92  ----EDLDDLLYAAEILEIEYLEEQCLKMLETI 120

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 12/66 (18%), Positives = 20/66 (30%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
           A   A EN    V+  L EL   ++             +AAE     ++  L +      
Sbjct: 129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

Query: 348 VRTVDG 353
              +  
Sbjct: 189 TAMIQA 194

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 13/124 (10%), Positives = 29/124 (23%), Gaps = 13/124 (10%)

Query: 232 LISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEAL---- 287
           L+       + ++      +                  +  KL       +L        
Sbjct: 216 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 275

Query: 288 ------ALHYAVENCSREVVKALLELGAADVNYPAG---PAGKTPLHIAAEMVSPDMVAV 338
                  L    +    + ++ LL +       P           L +A  + +    A+
Sbjct: 276 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 335

Query: 339 LLDH 342
           LL  
Sbjct: 336 LLSI 339

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           L +AVEN S  +V+ LL+ G          +G + LH A+      +V  L+   AD ++
Sbjct: 148 LIHAVENNSLSMVQLLLQHG--ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 205

Query: 349 RTVDGVTPLDI 359
           +     TPL +
Sbjct: 206 KNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMV 336
           LH A       +V+ L+  GA D +        TPL +A      D++
Sbjct: 181 LHSASGRGLLPLVRTLVRSGA-DSSLK-NCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLD----HHADPNVRTVDGVTPLDI 359
           G TPLHIA    +   V  L++       + ++      TPL +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 288 ALHYAVENCSREVVKALLEL---GAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHA 344
            LH AV   +   V  L+ L   G  +++       +TPLH+A     P +V +L+   A
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 345 DPN 347
            P 
Sbjct: 65  SPM 67

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM 330
            LH A        V+ LL    + +       G+ PLH +   
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSF 44

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHAD 345
            L +A+     +    L+E   A+ +      G     +A       +    L++  D
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 9e-05
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 2/126 (1%)

Query: 235 HHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVE 294
             +                      + +        L++        +    + LH A  
Sbjct: 88  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 147

Query: 295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH-ADPNVRTVDG 353
             S ++++ L  LG + VN+     G TPL  A      D   +L++ + A+ ++    G
Sbjct: 148 VGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

Query: 354 VTPLDI 359
               D+
Sbjct: 207 AKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 322 TPLHIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPLDI 359
            PLH A        V  LL    +    +  DG  PL  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW 40

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 290 HYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVR 349
           H AVE  +  V++ LL+ GA D        G+TPL  A    +P +  +L  H A     
Sbjct: 197 HLAVEAQAASVLELLLKAGA-DPTA-RMYGGRTPLGSALLRPNPILARLLRAHGAPEP-- 252

Query: 350 TVDG 353
             DG
Sbjct: 253 -EDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 320 GKTPLHIAAEMVSPDMVAVLLDHHADP---NVRTVDGVTPLDI 359
           G T LH+A        +  LL   A     +++   G T L +
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL 51

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 288 ALHYAVENCSREVVKALLELGA--ADVNYPAGPAGKTPLHIAAEM 330
           ALH AV +     +  LL   A    ++      G+T LH+AA +
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDL-QNDLGQTALHLAAIL 55

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           +TPLH+A E  +  ++ +LL   ADP  R   G TPL  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 8e-06
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 297 SREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH 343
           + +V+  LL  GA ++N      G+T LH+AA     D    LLD  
Sbjct: 1   TAQVISDLLAQGA-ELNATMDKTGETSLHLAARFARADAAKRLLDAG 46

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVL 339
           L  A    S E  KALL+  A +         + P  +A+E +  D+V +L
Sbjct: 160 LFLAAREGSYEASKALLDNFA-NREIT-DHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 321 KTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI 359
           +TPL +AA   S +    LLD+ A+  +       P D+
Sbjct: 157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDV 195

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 35/122 (28%)

Query: 271 LVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM 330
           L+        +N +    LHYA      E+   LLE GA + +        T +H AA  
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA-NPDAK-DHYEATAMHRAAAK 146

Query: 331 V---------------------------------SPDMVAVLLDHHADPNVRTVDGVTPL 357
                                               +   +L+   A   +   +  TPL
Sbjct: 147 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 206

Query: 358 DI 359
            +
Sbjct: 207 QV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNV 348
           LH A      E+VKALL  GA          G TPLH AA     ++  +LL+  A+P+ 
Sbjct: 74  LHIAASAGRDEIVKALLGKGA--QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 131

Query: 349 RTVDGVTPL 357
           +     T +
Sbjct: 132 KDHYEATAM 140

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPN 347
            LH A  +    +V+ L+ LGA          G+T LH+A ++ +PD+V++LL   AD N
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQNPDLVSLLLKCGADVN 172

Query: 348 VRTVDGVTPLDI 359
             T  G +P  +
Sbjct: 173 RVTYQGYSPYQL 184

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 320 GKTPLHIAAEM----VSPDMVAVLLDHHADPNVRTVDGVTPL 357
           G + LH+A       ++ +++  +    A  N +     TPL
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 288 ALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADP 346
           ALH AV+  + ++V  LL+ GA DVN      G +P  +     S  +   L     + 
Sbjct: 148 ALHLAVDLQNPDLVSLLLKCGA-DVNR-VTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	506
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.91
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.81
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.73
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.69
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	96.6
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	96.26
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	96.02
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	94.98
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	94.95
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	94.87
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	94.29

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.4e-30  Score=242.04  Aligned_cols=182  Identities=16%  Similarity=0.113  Sum_probs=153.1

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCC--------CCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLN--------LDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d--------~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      ...+++|.||||+||..|+.+++++|| +.|++        .+|+||||+||..|+.+++++|++.|+ +++.+| ..|+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll-~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~i~~~d-~~g~   79 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLL-GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVAE-RGGH   79 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHH-HHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCCC-TTSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHH-HcCCCcccccCcCCCCCCccchHHhhcccccccccccccc-cccccc-cccc
Confidence            356899999999999999999999999 44432        368999999999999999999999999 999999 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCCC-----------------------------------------------CCCCCCCCCC
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHHA-----------------------------------------------DPNVRTVDGV  354 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~ga-----------------------------------------------~~~~~d~~g~  354 (506)
                      ||||+|+..++.+++++|++.+.                                               +++.+|.+|+
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            99999999999999998865432                                               3356788999


Q ss_pred             cHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCC
Q 010590          355 TPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSS  434 (506)
Q Consensus       355 tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~  434 (506)
                      ||||+|+.                  .++.+++++|++.|++++..          .+..|.||||+|+...        
T Consensus       160 TpLh~A~~------------------~~~~~~v~~Ll~~~~~~~~~----------~~~~g~TpL~~A~~~~--------  203 (255)
T d1oy3d_         160 TPLHVAVI------------------HKDAEMVRLLRDAGADLNKP----------EPTCGRTPLHLAVEAQ--------  203 (255)
T ss_dssp             CHHHHHHH------------------TTCHHHHHHHHHHTCCTTCC----------CTTTCCCHHHHHHHTT--------
T ss_pred             cccccccc------------------ccccccccchhccccccccc----------cccccccccccccccc--------
Confidence            99999998                  78999999999999988865          3457889999985322        


Q ss_pred             CCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCCC
Q 010590          435 GSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSSR  475 (506)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~~  475 (506)
                         ....+++++  +.++++|.+|..|+||||+|+..|+..
T Consensus       204 ---~~~~v~~Ll--~~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         204 ---AASVLELLL--KAGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             ---CHHHHHHHH--HTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             ---HHHHHHHHH--HCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence               233445555  345899999999999999999999654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.4e-29  Score=232.00  Aligned_cols=176  Identities=20%  Similarity=0.250  Sum_probs=153.3

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...|..|+||||+||..|+.+++++|+. .+.     +..+.++++.++..++.+++++|+++|+ +++.+| ..|+|||
T Consensus        31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~-d~~~~d-~~g~tpL  107 (223)
T d1uoha_          31 TRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVN-QNGCTPL  107 (223)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTCCCHH
T ss_pred             cCcCCCCCCHHHHHHHhhhhcccccccc-cccccccccccccccccccccccccchhHHHhccCc-eeEeeC-CCCCchh
Confidence            3568999999999999999999999993 332     2257899999999999999999999999 999999 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCC
Q 010590          325 HIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGI  404 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~  404 (506)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+.                  .+...+++.|++.|.+++.+    
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~------------------~~~~~~~~~L~~~~~~i~~~----  165 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA------------------KGNLKMIHILLYYKASTNIQ----  165 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCSCCC----
T ss_pred             hHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhh------------------cCCcchhhhhccccceeeec----
Confidence            99999999999999999999999999999999999998                  78888999999999999988    


Q ss_pred             CCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhh
Q 010590          405 LNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQ  470 (506)
Q Consensus       405 ~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~  470 (506)
                             +..|.||||.|+..           +...++++++  +.++++|.+|.+|+||||+|+.
T Consensus       166 -------d~~g~TpL~~Aa~~-----------g~~~~v~~LL--~~Gad~~~~d~~g~tpl~~A~~  211 (223)
T d1uoha_         166 -------DTEGNTPLHLACDE-----------ERVEEAKLLV--SQGASIYIENKEEKTPLQVAKG  211 (223)
T ss_dssp             -------CTTCCCHHHHHHHT-----------TCHHHHHHHH--HTTCCSCCCCTTSCCHHHHCCT
T ss_pred             -------cCCCCceecccccc-----------CcHHHHHHHH--HCCCCCCCCCCCCCCHHHHHHC
Confidence                   45678999998532           2233445555  3458999999999999999853

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-27  Score=238.69  Aligned_cols=209  Identities=20%  Similarity=0.212  Sum_probs=131.5

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHH----------------------
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVK----------------------  302 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~----------------------  302 (506)
                      ...|..|.||||+||..|+.+++++|| ++|+|+     +|+||||+|+..|+.++++                      
T Consensus        27 n~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  105 (408)
T d1n11a_          27 NVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI  105 (408)
T ss_dssp             CCSSSCCCCHHHHHHHHTCHHHHHHHH-HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhh
Confidence            345666777777777777777777777 445443     3667777777666554433                      


Q ss_pred             --------------------------------------------HHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q 010590          303 --------------------------------------------ALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAV  338 (506)
Q Consensus       303 --------------------------------------------~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~  338 (506)
                                                                  .|+++|+ +++..+ ..|.+|||+|+..|+.+++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~-~~~~~~-~~~~~~L~~A~~~~~~~~~~~  183 (408)
T d1n11a_         106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAG-KNGLTPLHVAVHHNNLDIVKL  183 (408)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-SSCCCHHHHHHHTTCHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC-CCCcCC-CcCchHHHHHHHcCCHHHHHH
Confidence                                                        3344444 555554 556666666666666666666


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHH-----HHHHHHHcCC---------------------------------CCCCc---
Q 010590          339 LLDHHADPNVRTVDGVTPLDILRT-----LTSDFLFKGA---------------------------------VPGLT---  377 (506)
Q Consensus       339 Ll~~ga~~~~~d~~g~tpLh~A~~-----~~~~~l~~~~---------------------------------~~~~~---  377 (506)
                      |+.+|++++..+..|.||+|+++.     ....++..+.                                 ..+..   
T Consensus       184 Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  263 (408)
T d1n11a_         184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS  263 (408)
T ss_dssp             HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCC
Confidence            666666666666666666665552     1111111111                                 11110   


Q ss_pred             -------ccCCChHHHHHHHHHhccCccccccCCC----------------------CCCCCCCccccCCCCCCccCccC
Q 010590          378 -------HIEPNKLRLCLELVQSAALVLSREEGIL----------------------NEPSSSTATVIYPPPMSCCSEEV  428 (506)
Q Consensus       378 -------~~~~~~~~~~~~Ll~~ga~~~~~~~~~~----------------------~~~~~~~~~~~tplh~a~~~~~~  428 (506)
                             ....++.+++++|+++|++++..+..+.                      +.++..+..|.||||.|+..   
T Consensus       264 g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~---  340 (408)
T d1n11a_         264 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ---  340 (408)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---
T ss_pred             CCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHc---
Confidence                   0113345788999999999998887764                      45678889999999998532   


Q ss_pred             CCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          429 HNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                              +...++++++  ..++++|.+|.+|+||||+|++.|+.
T Consensus       341 --------g~~~iv~~Ll--~~GAd~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         341 --------GHTDIVTLLL--KNGASPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             --------TCHHHHHHHH--HTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             --------CCHHHHHHHH--HCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence                    2334455666  35689999999999999999999953

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-26  Score=213.78  Aligned_cols=177  Identities=23%  Similarity=0.147  Sum_probs=126.8

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHh---cCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVM---GEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~---~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      +|.||||+|+..|+.+++..|++   ..++++     +|+||||+|+..|+.+++++|++.|+ +++.+| ..|+||||+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-d~~~~d-~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELRD-FRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCCC-TTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccc-cccccc-ccccccccc
Confidence            47888888888888655554441   344433     58888888888888888888888888 888887 788888888


Q ss_pred             HHHhCCHHHHHHHHHCCCCC------CCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          327 AAEMVSPDMVAVLLDHHADP------NVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      |+..|+.++++.|++.+.+.      +.....|.||||+|+.                  .+..+.+..|++.|++++..
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~------------------~~~~~~~~~l~~~~~~~~~~  140 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI------------------HGYLGIVELLVSLGADVNAQ  140 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHHTCCTTCC
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhh------------------cCChhheeeecccCcccccc
Confidence            88888888888888876553      2345567888888876                  67778888888888887765


Q ss_pred             ccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          401 EEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       401 ~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                                .+..|.||||.|+..           +...++++++  +.++++|.+|.+|+||||+|++.|+.
T Consensus       141 ----------~~~~G~T~L~~A~~~-----------g~~~~v~~Ll--~~gad~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         141 ----------EPCNGRTALHLAVDL-----------QNPDLVSLLL--KCGADVNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             ----------CTTTCCCHHHHHHHT-----------TCHHHHHHHH--TTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             ----------cccCCCCcccccccc-----------ccHHHHHHHH--hcCCcccccCCCCCCHHHHHHHCCCH
Confidence                      234577888887422           1223334444  34477888888888888888888754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=3.1e-26  Score=220.76  Aligned_cols=192  Identities=22%  Similarity=0.185  Sum_probs=154.6

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .+..+.|||+.||..|+.++|++|| +.|+|+     +|+||||+|+..|+.++|++|+++|+ +++..+ ..+.|||++
T Consensus        36 ~~~~~~t~l~~A~~~G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~-~~~~~~L~~  112 (291)
T d1s70b_          36 VKFDDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPD-NEGWIPLHA  112 (291)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHH
T ss_pred             cCCCCchHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccc-cccccc-ccccccccc
Confidence            3456789999999999999999999 677755     58999999999999999999999999 999888 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-----HHHHHH-cCCC---------------------------
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTL-----TSDFLF-KGAV---------------------------  373 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~-----~~~~l~-~~~~---------------------------  373 (506)
                      |+..++.++++.|+++|+..+..|..|.+|+++|+..     ...++. .+..                           
T Consensus       113 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccc
Confidence            9999999999999999999999999999999998721     111111 1110                           


Q ss_pred             ---------CCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCcccccccc
Q 010590          374 ---------PGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSL  444 (506)
Q Consensus       374 ---------~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~  444 (506)
                               |.......++.+++..|++.|++++.+           +..|.||||+|+..+           ...++++
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~-----------~~~g~TpL~~A~~~g-----------~~~iv~l  250 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-----------DYDGWTPLHAAAHWG-----------KEEACRI  250 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-----------CTTCCCHHHHHHHTT-----------CHHHHHH
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccceeccccc-----------ccCCCCHHHHHHHcC-----------CHHHHHH
Confidence                     111122245678899999999999887           456779999995422           3334555


Q ss_pred             ccCCCcceeeccCCCCCCCcchhhhh
Q 010590          445 NLDSSRLVYLNLGAGTGNSAHHHHHQ  470 (506)
Q Consensus       445 ~~~~~~~~~ln~~D~~G~T~LH~Aa~  470 (506)
                      ++  ..++++|.+|.+|+||||+|++
T Consensus       251 Ll--~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         251 LV--ENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HH--HTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HH--HCCCCCCCcCCCCCCHHHHHHH
Confidence            65  3568999999999999999975

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-25  Score=184.43  Aligned_cols=111  Identities=23%  Similarity=0.271  Sum_probs=102.4

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.|+.+|.++.||||+|.|+|++|+|||+|||++||||++||.++                         ..
T Consensus         9 ~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~-------------------------~~   63 (121)
T d1buoa_           9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-------------------------SQ   63 (121)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-------------------------CS
T ss_pred             CchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc-------------------------cc
Confidence            78999999999999999999999999999999999999999999999999763                         35


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLAN  163 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~~  163 (506)
                      +|.++++++++|+.+|+|+|||++.++.+.                       +.+++.+|+.|+++.+.+.|.+.+.+
T Consensus        64 ~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~-----------------------v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          64 HYTLDFLSPKTFQQILEYAYTATLQAKAED-----------------------LDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHSCCCCCGGG-----------------------HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             eeecCCCCHHHHHHHHHheEccccCCcHHH-----------------------HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            799999999999999999999999876543                       67899999999999999999988753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.8e-26  Score=209.33  Aligned_cols=179  Identities=15%  Similarity=0.084  Sum_probs=120.0

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC--------CChHHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCC
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL--------DEALALHYAVENCSREVVKALLELGAADVN--YPAGP  318 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~--------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~--~~~~~  318 (506)
                      ....|.+|.||||+|+..|+.+++++|| +.|+++        .|.+|+|+++..+..++++.++..+. ..+  ..+ .
T Consensus        27 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~  103 (229)
T d1ixva_          27 LLQKDQDGRIPLHWSVSFQAHEITSFLL-SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL-KPDLNKIT-N  103 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH-TTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSS-CCCTTCCC-T
T ss_pred             ccccCCCCCCHHHHHHHcCCccccchhh-hhhccccccccccccccccccccccccccccccccccccc-cccccccc-c
Confidence            3345566666666666666666666666 444433        25566666666666666666666554 322  233 5


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc-cCc
Q 010590          319 AGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA-ALV  397 (506)
Q Consensus       319 ~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g-a~~  397 (506)
                      .+.|||++++..++.+++++|++.|.+.+.+|..|+||||+|+.                  .+..++++.|++.| .++
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~------------------~~~~~~~~~Ll~~~~~~i  165 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS------------------VGSLKLIELLCGLGKSAV  165 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH------------------HTCHHHHHHHHTTTCCCS
T ss_pred             ccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhh------------------cccccccccccccccccc
Confidence            66677777777777777777777777777777777777777776                  56778888888877 456


Q ss_pred             cccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhc
Q 010590          398 LSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQM  471 (506)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~  471 (506)
                      +.+           +..|.||||+|+...           ....+++++. ..++++|.+|.+|+||||+|++.
T Consensus       166 n~~-----------d~~g~TpLh~A~~~~-----------~~~~v~~Ll~-~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         166 NWQ-----------DKQGWTPLFHALAEG-----------HGDAAVLLVE-KYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             CCC-----------CTTSCCHHHHHHHTT-----------CHHHHHHHHH-HHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             ccc-----------ccccCCchhhhcccc-----------cHHHHHHHHH-hcCCCCCCcCCCCCCHHHHHhhH
Confidence            665           667889999995432           2234445543 33589999999999999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=2.6e-26  Score=219.34  Aligned_cols=194  Identities=17%  Similarity=0.155  Sum_probs=146.9

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHh-------cCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVM-------GEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~-------~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      +.|+||||+||..|+.++|+.|+.       +.|+|+     +|+||||+|+..|+.++|++||++|+ +++.++ ..|.
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga-d~n~~~-~~g~  108 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIYN-KSER  108 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCC-TTCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccc-cccccc-cccc
Confidence            469999999999999999988862       456655     59999999999999999999999999 999998 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHCC---CCCCCCCCCCCcHHHHHHH-------HHHHHHH-cCCC-----------------
Q 010590          322 TPLHIAAEMVSPDMVAVLLDHH---ADPNVRTVDGVTPLDILRT-------LTSDFLF-KGAV-----------------  373 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~tpLh~A~~-------~~~~~l~-~~~~-----------------  373 (506)
                      |||++|+..++.++++++...+   ..++..+..+.++.+++..       .....+. ....                 
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            9999999999999999988764   5677888899999998873       1111111 1111                 


Q ss_pred             -CCCcccCCChHHHHHH-HHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcc
Q 010590          374 -PGLTHIEPNKLRLCLE-LVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRL  451 (506)
Q Consensus       374 -~~~~~~~~~~~~~~~~-Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (506)
                       +.......++.+++.. +...|.+++.+           +..|.||||+|+..+           ...++++++  +.+
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~-----------d~~g~tpL~~A~~~g-----------~~~iv~~Ll--~~g  244 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQ-----------DEDGKTPIMLAAQEG-----------RIEVVMYLI--QQG  244 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCC-----------CTTCCCHHHHHHHHT-----------CHHHHHHHH--HTT
T ss_pred             Ccccccccccccccccccccccccccccc-----------CCCCCCHHHHHHHcC-----------CHHHHHHHH--HCc
Confidence             1111222455566665 45666777766           567789999985432           233445555  345


Q ss_pred             eeeccCCCCCCCcchhhhhcCC
Q 010590          452 VYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       452 ~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                      +++|.+|.+|+||||+|++.|.
T Consensus       245 adin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         245 ASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             CCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCC
Confidence            8999999999999999999995

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.6e-25  Score=182.49  Aligned_cols=115  Identities=23%  Similarity=0.273  Sum_probs=105.6

Q ss_pred             hhhHHHHHHHHHHHhcCCCceeEEEEECCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 010590            5 ESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTG   84 (506)
Q Consensus         5 ~~~~~~~~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   84 (506)
                      ++|++.+++.|+.||+++.+|||+|+++|++|+|||+|||++|+||++||.+++.|+                    ...
T Consensus         6 ~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~--------------------~~~   65 (122)
T d1r29a_           6 TRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN--------------------LSV   65 (122)
T ss_dssp             TTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTT--------------------CSE
T ss_pred             chHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhh--------------------cce
Confidence            689999999999999999999999999999999999999999999999999988876                    345


Q ss_pred             eEEcCCCCHHHHHHHhhhhhccceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 010590           85 VIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLA  162 (506)
Q Consensus        85 ~i~l~~i~~~~~~~ll~f~Ytg~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~l~~l~~~~l~  162 (506)
                      ++.++++++++|+.+|+|+|||++.++.+.                       +.+++.+|++|+++.++..|.+.|.
T Consensus        66 ~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~-----------------------v~~ll~~A~~l~i~~L~~~C~~~L~  120 (122)
T d1r29a_          66 INLDPEINPEGFNILLDFMYTSRLNLREGN-----------------------IMAVMATAMYLQMEHVVDTCRKFIK  120 (122)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHSCCCCCTTT-----------------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             eeeecccCHHHHHHHHhhhcCCeecCchhh-----------------------HHHHHHHHHHHCcHHHHHHHHHHHH
Confidence            666789999999999999999999887554                       7789999999999999999998875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=202.16  Aligned_cols=171  Identities=22%  Similarity=0.274  Sum_probs=143.0

Q ss_pred             hhcccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHH
Q 010590          220 DLRHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVE  294 (506)
Q Consensus       220 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~  294 (506)
                      +..+.|||.........................+..+.++++.|+..|+.+++++|+ +.++++     +|.||||+|+.
T Consensus        34 D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll-~~~~d~~~~d~~g~tpL~~A~~  112 (223)
T d1uoha_          34 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAAS  112 (223)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHh-ccCceeEeeCCCCCchhhHHHH
Confidence            334566665544433333222223333344455677899999999999999999999 566644     58999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCC
Q 010590          295 NCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVP  374 (506)
Q Consensus       295 ~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~  374 (506)
                      .|+.+++++|+++|+ +++.++ ..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+.            
T Consensus       113 ~~~~e~~~~Ll~~g~-d~~~~~-~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~------------  178 (223)
T d1uoha_         113 KNRHEIAVMLLEGGA-NPDAKD-HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD------------  178 (223)
T ss_dssp             HTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH------------
T ss_pred             cCCHHHHHHHHHCCC-CCCCcC-CCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccc------------
Confidence            999999999999999 999998 899999999999999999999999999999999999999999998            


Q ss_pred             CCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          375 GLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       375 ~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                            .++.+++++|++.|+|++.+           |..|.||||+|
T Consensus       179 ------~g~~~~v~~LL~~Gad~~~~-----------d~~g~tpl~~A  209 (223)
T d1uoha_         179 ------EERVEEAKLLVSQGASIYIE-----------NKEEKTPLQVA  209 (223)
T ss_dssp             ------TTCHHHHHHHHHTTCCSCCC-----------CTTSCCHHHHC
T ss_pred             ------cCcHHHHHHHHHCCCCCCCC-----------CCCCCCHHHHH
Confidence                  78999999999999999988           55677999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.9e-24  Score=183.69  Aligned_cols=116  Identities=25%  Similarity=0.302  Sum_probs=108.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCC
Q 010590          258 RRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVS  332 (506)
Q Consensus       258 t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~  332 (506)
                      +|||+||..|+.++|++|+ ++|+|+     +|+||||+|+ .|+.+++++|+++|+ +++.++ ..|.|||+.++..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll-~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a-~~~~~~-~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA-NPDLKD-RTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHH-HCCCCcCccCCcccccccccc-ccccccccccccccc-cccccc-ccCcccccccccccc
Confidence            8999999999999999999 778766     4899999886 789999999999999 999998 899999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhcc
Q 010590          333 PDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA  395 (506)
Q Consensus       333 ~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga  395 (506)
                      .+.++.|+..+.+++..|..|.+|||+|+.                  .+..++++.|+++|+
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~------------------~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAK------------------EGHLRVVEFLVKHTA  123 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccccc------------------ccccccccccccccc
Confidence            999999999999999999999999999998                  788899999999774

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-24  Score=205.44  Aligned_cols=195  Identities=21%  Similarity=0.159  Sum_probs=139.9

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCCC------ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------------
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNLD------EALALHYAVENCSREVVKALLELGAADVNYPA------------  316 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~------g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~------------  316 (506)
                      ++.|+||.|++.|+.++|++|| +.|+|++      |+||||+|+..|+.+++++|++.+. .++..+            
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll-~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~-~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccc-cccccccccchhhHHHhh
Confidence            4678999999999999999999 6777663      7899999999999999999998877 443221            


Q ss_pred             --------------------CCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHHHH---
Q 010590          317 --------------------GPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVR----------TVDGVTPLDILRTL---  363 (506)
Q Consensus       317 --------------------~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~----------d~~g~tpLh~A~~~---  363 (506)
                                          +..|.|+|++|+..++...++.++....+++..          +..|.||||+|+..   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence                                145667777777777777777777776665543          33478888888842   


Q ss_pred             --HHHHHH-cCCCCCCcc--------------cCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCc
Q 010590          364 --TSDFLF-KGAVPGLTH--------------IEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSE  426 (506)
Q Consensus       364 --~~~~l~-~~~~~~~~~--------------~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~  426 (506)
                        ...++. .|++++...              ...+...+++.|+++|++++.+           +..|.||||.|+..+
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~-----------~~~g~t~L~~a~~~~  230 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-----------GERGKTPLILAVEKK  230 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-----------CTTSCCHHHHHHHTT
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc-----------CCCCCCccchhhhcC
Confidence              333333 345544332              2234557889999999999876           556779999985322


Q ss_pred             cCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCCC
Q 010590          427 EVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGSS  474 (506)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs~  474 (506)
                                 ....+++.+. ..++++|.+|.+|+||||+|+++|+.
T Consensus       231 -----------~~~~v~~lL~-~~g~din~~d~~G~TpL~~A~~~~~~  266 (285)
T d1wdya_         231 -----------HLGLVQRLLE-QEHIEINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             -----------CHHHHHHHHH-SSSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             -----------cHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence                       2334444443 34588999999999999999999854

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=183.68  Aligned_cols=120  Identities=25%  Similarity=0.256  Sum_probs=105.9

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV  331 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~  331 (506)
                      -+.|+.||..|+.++|+.||...+.++     .|+||||+|+ .|+.+++++|++.++ +++..+ ..|.+||+.|+..+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~-~~~~~~-~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA-SPNVQD-TSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC-CTTCCC-TTSCCHHHHHHHTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccc-cccccc-cccccccccccccc
Confidence            345999999999999999996556554     4899999987 488999999999999 999998 89999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcc
Q 010590          332 SPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVL  398 (506)
Q Consensus       332 ~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  398 (506)
                      +.+++++++++|+++|.+|..|+||||+|+.                  .++.+++++|+ .|++++
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~------------------~~~~~i~~~L~-~~~~~~  127 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQ------------------EGHTAVVSFLA-AESDLH  127 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH------------------HTCHHHHHHHH-TTSCTT
T ss_pred             cccccccccccccccccccCCCCeeeccccc------------------ccccccccccc-cccccc
Confidence            9999999999999999999999999999998                  57888888776 555444

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.3e-23  Score=180.66  Aligned_cols=123  Identities=24%  Similarity=0.300  Sum_probs=112.4

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCC----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCC
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNL----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVS  332 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~  332 (506)
                      .||||.||+.|+.++|++|| +.|+++    .|+||||+|+..++.++++.++.... .....+ ..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL-~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILM-ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDART-KVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHH-HHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCC-TTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHH-HcCCCcccccCCCccccccccccccccccccccccc-cccccc-ccccccccccccccc
Confidence            49999999999999999999 455533    59999999999999999999999988 777776 789999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          333 PDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       333 ~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      .+++++|+.+|++++.+|.+|+||||+|+.                  .++.+++++|++.|+|++.+
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~------------------~g~~~iv~~ll~~gad~~~~  129 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATE------------------HNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC
T ss_pred             ceeeecccccCCccccccccCchHHHhhhh------------------cchhheeeeccccccCCccc
Confidence            999999999999999999999999999998                  78999999999999887755

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=9.5e-26  Score=215.33  Aligned_cols=199  Identities=16%  Similarity=0.120  Sum_probs=134.2

Q ss_pred             cHHHHHHHhc-CCHHHHHHHHhcCCCCC----CChHHHHHHHHcCCHHHHHHH--------HHcCCCCCCCCCCCCCChH
Q 010590          257 IRRMRRALDS-SDVELVKLMVMGEGLNL----DEALALHYAVENCSREVVKAL--------LELGAADVNYPAGPAGKTP  323 (506)
Q Consensus       257 ~t~L~~A~~~-g~~~~v~~Ll~~~~~d~----~g~t~Lh~A~~~g~~~~v~~L--------l~~g~~~v~~~~~~~g~tp  323 (506)
                      .||||+|+.. |..++++.|. +.++|.    .|+||||+||..|+.++|++|        ++.|+ |||.+| ..|+||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~-~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Ga-dvn~~d-~~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPIT-RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAMD-CDENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCS-TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-CTTCCC-TTSCCH
T ss_pred             CChHHHHHHhCCCHHHHHHHH-hcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCC-CccccC-CCCCee
Confidence            3788866554 5666666666 555544    499999999999999988776        56799 999999 899999


Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH----HHHHHcC----CCCCCccc-------------CCC
Q 010590          324 LHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLT----SDFLFKG----AVPGLTHI-------------EPN  382 (506)
Q Consensus       324 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~----~~~l~~~----~~~~~~~~-------------~~~  382 (506)
                      ||+|+..|+.++|++|+++|+|++.+|.+|.|||++|+...    ...+...    ........             ...
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             eccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            99999999999999999999999999999999999999521    1111110    00000000             011


Q ss_pred             hHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCC
Q 010590          383 KLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGN  462 (506)
Q Consensus       383 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~  462 (506)
                      ....+..+.+.......   .........+..|.||||.++...           ......+.+. ....+++.+|..|+
T Consensus       158 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~t~L~~~~~~~-----------~~~~~~~~l~-~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDY---DGAARKDSEKYKGRTALHYAAQVS-----------NMPIVKYLVG-EKGSNKDKQDEDGK  222 (277)
T ss_dssp             HHHHHHHHHHHTCCSSC---CSGGGTSSSSCCCCCTHHHHHSSC-----------CHHHHHHHHH-HSCCCTTCCCTTCC
T ss_pred             ccccccccccccccccc---cccccccccccCCCCccccccccc-----------cccccccccc-cccccccccCCCCC
Confidence            22333444443322221   112234456778999999873211           1112222221 23367899999999


Q ss_pred             CcchhhhhcCC
Q 010590          463 SAHHHHHQMGS  473 (506)
Q Consensus       463 T~LH~Aa~~gs  473 (506)
                      ||||+|++.|+
T Consensus       223 tpL~~A~~~g~  233 (277)
T d2fo1e1         223 TPIMLAAQEGR  233 (277)
T ss_dssp             CHHHHHHHHTC
T ss_pred             CHHHHHHHcCC
Confidence            99999999984

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.1e-24  Score=176.76  Aligned_cols=106  Identities=23%  Similarity=0.233  Sum_probs=95.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHH
Q 010590          286 ALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTS  365 (506)
Q Consensus       286 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~  365 (506)
                      .|||++|++.|+.++|++|++.|+ ++|.++ ..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.   
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~-d~n~~~-~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~---   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGE-DVNRTL-EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY---   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTC-CCCCCS-SSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHT---
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhh-cccccc-ccccccccccccccccccccccccccceeeecccccccchhhhhh---
Confidence            489999999999999999999999 999998 899999999999999999999999999999999999999999987   


Q ss_pred             HHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          366 DFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                                     .++.+++++|+++|+|++.+           +..|.||||+|
T Consensus        78 ---------------~~~~~~v~~Ll~~Gad~~~~-----------d~~G~t~l~~a  108 (118)
T d1myoa_          78 ---------------EGHVSCVKLLLSKGADKTVK-----------GPDGLTALEAT  108 (118)
T ss_dssp             ---------------TTCCHHHHHHHTTCCCSSSS-----------SSSTCCCCCTC
T ss_pred             ---------------cCchhhhhhhhcccccceee-----------CCCCCCHHHHH
Confidence                           67889999999999999888           44566888887

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3e-23  Score=195.63  Aligned_cols=156  Identities=24%  Similarity=0.262  Sum_probs=124.7

Q ss_pred             cccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC--------------------
Q 010590          222 RHKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL--------------------  281 (506)
Q Consensus       222 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--------------------  281 (506)
                      .+.|||.........................|..|.||||+|+..|+.+++++|++....                    
T Consensus        44 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (255)
T d1oy3d_          44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (255)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccc
Confidence            456666554433322222111112223445688999999999999999999999731100                    


Q ss_pred             -------------------------------CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHh
Q 010590          282 -------------------------------NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM  330 (506)
Q Consensus       282 -------------------------------d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~  330 (506)
                                                     |.+|.||||+||..|+.++|++|++.++ +++..++..|+||||+|+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~TpL~~A~~~  202 (255)
T d1oy3d_         124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-DLNKPEPTCGRTPLHLAVEA  202 (255)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHT
T ss_pred             hHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccc-cccccccccccccccccccc
Confidence                                           1136899999999999999999999999 88876557899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          331 VSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       331 ~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      |+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|+++||+
T Consensus       203 ~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~------------------~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         203 QAASVLELLLKAGADPTARMYGGRTPLGSALL------------------RPNPILARLLRAHGAP  250 (255)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT------------------SSCHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------------------CCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999997                  7899999999999996

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.9e-24  Score=179.44  Aligned_cols=116  Identities=25%  Similarity=0.229  Sum_probs=105.4

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-ChHHHHHH
Q 010590          255 QKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAG-KTPLHIAA  328 (506)
Q Consensus       255 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g-~tpLh~A~  328 (506)
                      .+.++||+|+..|+.++|++|+ +.|+|+     +|.||||+|+ .|+.+++++|+++|+ ++|.++ ..| .||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll-~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga-~~~~~~-~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA-EPNCAD-PATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-CCCCCC-TTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHH-HcCCccccccccccccccccc-ccccccccccccccc-cccccc-cccccccccccc
Confidence            4678999999999999999999 778766     4899999775 799999999999999 999998 555 57999999


Q ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHH
Q 010590          329 EMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQ  392 (506)
Q Consensus       329 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~  392 (506)
                      +.|+.+++++|+++|++++.+|..|+||||+|+.                  .++.+++++|++
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~------------------~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE------------------LGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH------------------HTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccCCCCCHHHHHHH------------------cCCHHHHHHHHh
Confidence            9999999999999999999999999999999998                  688888888765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.6e-24  Score=179.91  Aligned_cols=102  Identities=32%  Similarity=0.388  Sum_probs=97.4

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV  331 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~  331 (506)
                      .|||++|++.|+.++|++|+ +.|+|+     +|+||||+|+..|+.+++++|++.|+ ++|.+| ..|+||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~-din~~d-~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DINAPD-KHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC-TTTCCS-SSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHH-Hhhhccccccccccccccccccccccccccccccccc-eeeecc-cccccchhhhhhcC
Confidence            58999999999999999999 777766     48999999999999999999999999 999999 89999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 010590          332 SPDMVAVLLDHHADPNVRTVDGVTPLDILR  361 (506)
Q Consensus       332 ~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~  361 (506)
                      +.+++++|+++|+|++.+|.+|+||||+|.
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999999885

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=2.5e-25  Score=220.26  Aligned_cols=134  Identities=11%  Similarity=-0.034  Sum_probs=112.4

Q ss_pred             CCccccHHHHHHHhcCCHHHHHH---HHhcCCCCCC-----ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCCh
Q 010590          252 LEDQKIRRMRRALDSSDVELVKL---MVMGEGLNLD-----EALALHYAVENCSREVVKALLELGAADVNYPA-GPAGKT  322 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~---Ll~~~~~d~~-----g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~-~~~g~t  322 (506)
                      .+..|.||||+||.+|+.+++++   |+ ..|++++     |+||||+||..|+.++|++|++.|+ +++..+ ...|+|
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~-~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~-~~~~~~~~~~g~t  163 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP-TEIMAMIQAENYH  163 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT-TTHHHHHSHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHH-hCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CccccccccCCCC
Confidence            36789999999999999988876   45 6777653     8999999999999999999999999 998865 135999


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccc
Q 010590          323 PLHIAAEMVSPDMVAVLLDHHADP---NVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLS  399 (506)
Q Consensus       323 pLh~A~~~~~~~~v~~Ll~~ga~~---~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~  399 (506)
                      |||+||..|+.++|++|++.|++.   +..+.+|.||+|+|+.                  .++.+++++|++.|++++.
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~------------------~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG------------------RGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST------------------TCCHHHHHHHTTSHHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh------------------cCHHHHHHHHHhCCCCcch
Confidence            999999999999999999999875   3445667788888876                  7899999999999998887


Q ss_pred             cccCCC
Q 010590          400 REEGIL  405 (506)
Q Consensus       400 ~~~~~~  405 (506)
                      .+..+.
T Consensus       226 ~~~~~~  231 (346)
T d2ajaa1         226 AEIHEF  231 (346)
T ss_dssp             HHHCTT
T ss_pred             HHHHHH
Confidence            655443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=185.70  Aligned_cols=140  Identities=26%  Similarity=0.227  Sum_probs=120.0

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHh---cCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------
Q 010590          254 DQKIRRMRRALDSSDVELVKLMVM---GEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPA---------  316 (506)
Q Consensus       254 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~---------  316 (506)
                      ++|.||||+||..|+.++++.|++   +.|+++     +|+||||+|+..|+.+++++|+++|+ +++..+         
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-SPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccc-ccccccccccccccc
Confidence            368999999999999999998873   456544     58999999999999999999999988 544321         


Q ss_pred             -------------------------------------------------------------CCCCChHHHHHHHhCCHHH
Q 010590          317 -------------------------------------------------------------GPAGKTPLHIAAEMVSPDM  335 (506)
Q Consensus       317 -------------------------------------------------------------~~~g~tpLh~A~~~~~~~~  335 (506)
                                                                                   ...|.+||+.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence                                                                         1357889999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccc
Q 010590          336 VAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATV  415 (506)
Q Consensus       336 v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  415 (506)
                      ++.++++|.+++.+|..|.||||+|+.                  .++.+++++|+++|+|++.+           +..|
T Consensus       160 ~~~~~~~~~~~~~~d~~g~t~L~~A~~------------------~g~~~~v~~Ll~~Gad~n~~-----------d~~G  210 (228)
T d1k1aa_         160 VQLLLQHGANVNAQMYSGSSALHSASG------------------RGLLPLVRTLVRSGADSSLK-----------NCHN  210 (228)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHH------------------HTCHHHHHHHHHTTCCTTCC-----------CTTS
T ss_pred             hhhhhhhccccccccccCcchHHHHHH------------------cCCHHHHHHHHHCCCCCCCC-----------CCCC
Confidence            999999999999999999999999998                  68899999999999999988           5577


Q ss_pred             cCCCCCCc
Q 010590          416 IYPPPMSC  423 (506)
Q Consensus       416 ~tplh~a~  423 (506)
                      .||||+|+
T Consensus       211 ~TpL~~A~  218 (228)
T d1k1aa_         211 DTPLMVAR  218 (228)
T ss_dssp             CCTTTTCS
T ss_pred             CCHHHHHH
Confidence            79999984

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-22  Score=171.14  Aligned_cols=120  Identities=25%  Similarity=0.227  Sum_probs=107.1

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhC
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMV  331 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~  331 (506)
                      .++|+.||..|+.++|+.|+ +.|+|+     +|+||||+|+..|+.+++++|+++|+ ++|.+| .+|+||||+|+..|
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll-~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~-~~~~~d-~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAAD-SDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCC-TTCCCHHHHHHHTT
T ss_pred             hHHHHHHHHcCCHHHHHHHH-HcCCCcccccccccccccccccccccccccccccccc-cccccc-ccCcccccccchhh
Confidence            47899999999999999999 777765     48999999999999999999999999 999999 89999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhcc
Q 010590          332 SPDMVAVLLDHHADPNVRTV-DGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAA  395 (506)
Q Consensus       332 ~~~~v~~Ll~~ga~~~~~d~-~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga  395 (506)
                      +.+++++|+++|++++.++. .|+||++++..                ...++.+++++|+..+.
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a----------------~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEE----------------MEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS----------------SSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHH----------------HHcChHHHHHHHHhHHH
Confidence            99999999999999998875 58999988742                12567889999987653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=2.6e-22  Score=183.13  Aligned_cols=178  Identities=17%  Similarity=0.115  Sum_probs=130.2

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .|..|.||||+||..|+.+++++|+ ..|+++     .+.++++.++..++............ .........|.++.+.
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll-~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   96 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLL-DAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA-TNLNARMHDGTTPLIL   96 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTCCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-hhccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            4789999999999999999999999 555544     36788888888888777666665554 2222222567777777


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCC
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILN  406 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~  406 (506)
                      +.........+.|...|++++.+|..|+|||++|+.                  .+..+++..+++.+++++.+      
T Consensus        97 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~------------------~~~~~~~~~l~~~~~~~~~~------  152 (209)
T d1ot8a_          97 AARLAIEGMVEDLITADADINAADNSGKTALHWAAA------------------VNNTEAVNILLMHHANRDAQ------  152 (209)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC------
T ss_pred             cccccchhhhhhhhhhcccccccCCCCCCcchhhcc------------------cCcceeeeeecccccccccc------
Confidence            777777777777888888888888888888888876                  56777777788887777766      


Q ss_pred             CCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhhhcCC
Q 010590          407 EPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHHQMGS  473 (506)
Q Consensus       407 ~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa~~gs  473 (506)
                           +..|.||||.|+..           +....+++++  +.++++|.+|.+|+||||+|++.|+
T Consensus       153 -----d~~g~TpL~~A~~~-----------g~~~~v~~Ll--~~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         153 -----DDKDETPLFLAARE-----------GSYEASKALL--DNFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             -----CTTCCCHHHHHHHT-----------TCHHHHHHHH--HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             -----ccccccccchhccc-----------cHHHHHHHHH--HCCCCCCCcCCCCCCHHHHHHHcCC
Confidence                 44566778877432           2222333444  2346788889999999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.3e-22  Score=184.37  Aligned_cols=172  Identities=20%  Similarity=0.126  Sum_probs=142.2

Q ss_pred             HhhcccchhHHHhhcccccccccccc---cccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-------CCCChHH
Q 010590          219 EDLRHKSSLARRSLISHHHHHHHHDL---SAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-------NLDEALA  288 (506)
Q Consensus       219 ~~~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-------d~~g~t~  288 (506)
                      .+..+.|||.................   ........+..|.+|+|+|+..+..++++.++ ..+.       +..+.||
T Consensus        30 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  108 (229)
T d1ixva_          30 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTC  108 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-SSSSCCCTTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            45678999988765543332211111   12223456778999999999999999999988 4443       2247899


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHHHH
Q 010590          289 LHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHH-ADPNVRTVDGVTPLDILRTLTSDF  367 (506)
Q Consensus       289 Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpLh~A~~~~~~~  367 (506)
                      |+.++..++.+++++|++.|. +++.++ ..|+||||+|+..|+.+++++|++.| .+++.+|.+|+||||+|+.     
T Consensus       109 l~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~-----  181 (229)
T d1ixva_         109 LHLAVGKKWFEVSQFLIENGA-SVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA-----  181 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC-CSCCCC-TTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH-----
T ss_pred             cccccccchhhhhhhhhhhcc-cccccC-CCCCCccchhhhcccccccccccccccccccccccccCCchhhhcc-----
Confidence            999999999999999999999 999998 89999999999999999999999986 7899999999999999998     


Q ss_pred             HHcCCCCCCcccCCChHHHHHHHHH-hccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          368 LFKGAVPGLTHIEPNKLRLCLELVQ-SAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       368 l~~~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                                   .++.+++++|++ .|+|++.+           +..|.||||+|
T Consensus       182 -------------~~~~~~v~~Ll~~~gad~~~~-----------d~~g~t~l~~A  213 (229)
T d1ixva_         182 -------------EGHGDAAVLLVEKYGAEYDLV-----------DNKGAKAEDVA  213 (229)
T ss_dssp             -------------TTCHHHHHHHHHHHCCCSCCC-----------CTTSCCTGGGC
T ss_pred             -------------cccHHHHHHHHHhcCCCCCCc-----------CCCCCCHHHHH
Confidence                         789999999997 59999998           55677999998

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=3.9e-22  Score=191.66  Aligned_cols=142  Identities=23%  Similarity=0.286  Sum_probs=125.8

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPA--------  316 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~--------  316 (506)
                      ...|..|.||||+|+..|+.++|++|+ +.+.+.     .+.|||++|+..++.++++.|+++|+ ..+..+        
T Consensus        67 n~~d~~G~T~L~~A~~~g~~eiv~~Ll-~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~  144 (291)
T d1s70b_          67 NYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLD  144 (291)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred             CccCCCCCcHHHHHHhcCCceeeeeec-ccccccccccccccccccccccccccchhhcccccCc-ccccccccCccccc
Confidence            456889999999999999999999999 566543     47899999999999999999999887 443222        


Q ss_pred             ---------------------------------------------------CCCCChHHHHHHHhCCHHHHHHHHHCCCC
Q 010590          317 ---------------------------------------------------GPAGKTPLHIAAEMVSPDMVAVLLDHHAD  345 (506)
Q Consensus       317 ---------------------------------------------------~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~  345 (506)
                                                                         +..|.||||+|+..|+.+++++|+++|++
T Consensus       145 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d  224 (291)
T d1s70b_         145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (291)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             cccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec
Confidence                                                               15788999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          346 PNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       346 ~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                      +|.+|.+|+||||+|+.                  .++.+++++|+++|+|++.+           |..|.||||+|
T Consensus       225 in~~~~~g~TpL~~A~~------------------~g~~~iv~lLl~~Gadv~~~-----------d~~G~TaL~~A  272 (291)
T d1s70b_         225 VNIKDYDGWTPLHAAAH------------------WGKEEACRILVENLCDMEAV-----------NKVGQTAFDVA  272 (291)
T ss_dssp             TTCCCTTCCCHHHHHHH------------------TTCHHHHHHHHHTTCCTTCC-----------CTTSCCTTTSC
T ss_pred             ccccccCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCCCCc-----------CCCCCCHHHHH
Confidence            99999999999999998                  78999999999999999988           55777999998

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.1e-22  Score=182.32  Aligned_cols=144  Identities=20%  Similarity=0.171  Sum_probs=126.5

Q ss_pred             cccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCC
Q 010590          249 AADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNY------PAG  317 (506)
Q Consensus       249 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~------~~~  317 (506)
                      ....|..|+||||+|+..|+.+++++|+ +.|+|+     +|.||||+|+..++.++++.|+..+. +...      .. 
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~-~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-  108 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT-TPHLHSILKATN-  108 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCC-SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTT-TTSSSCGGGCCC-
T ss_pred             cccCCCCCCccccccccccccccccccc-cccccccccccccccccccccccccccccchhhhhcc-cccccccccccc-
Confidence            3456889999999999999999999999 777755     58999999999999999999999876 4332      22 


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccC
Q 010590          318 PAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRT-VDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL  396 (506)
Q Consensus       318 ~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d-~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~  396 (506)
                      ..|.||||+|+..++.+++++|+..|++++..+ .+|+||||+|+.                  .++.+++++|++.|+|
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~------------------~g~~~~v~~Ll~~gad  170 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD------------------LQNPDLVSLLLKCGAD  170 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH------------------TTCHHHHHHHHTTTCC
T ss_pred             cccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccc------------------cccHHHHHHHHhcCCc
Confidence            568999999999999999999999999998875 579999999998                  7899999999999999


Q ss_pred             ccccccCCCCCCCCCCccccCCCCCCcc
Q 010590          397 VLSREEGILNEPSSSTATVIYPPPMSCC  424 (506)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~tplh~a~~  424 (506)
                      ++.+           +..|.||||+|+.
T Consensus       171 ~~~~-----------~~~G~tpl~~A~~  187 (221)
T d1iknd_         171 VNRV-----------TYQGYSPYQLTWG  187 (221)
T ss_dssp             SCCC-----------CTTCCCGGGGCTT
T ss_pred             cccc-----------CCCCCCHHHHHHH
Confidence            9988           5667799999853

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=185.25  Aligned_cols=163  Identities=18%  Similarity=0.113  Sum_probs=119.9

Q ss_pred             CChHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 010590          284 DEALALHYAVENCSREVVKALLE----LGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDI  359 (506)
Q Consensus       284 ~g~t~Lh~A~~~g~~~~v~~Ll~----~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~  359 (506)
                      +|+||||+||..|+.++|+.|++    .|+ ++|.+| ..|+||||+|+..|+.+++++|+++|++++..+..|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~-~in~~d-~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGR-ELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTC-CSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCccC-CCCCccceehhccccccccccccccccccccccccccccccc
Confidence            69999999999999999998874    789 999999 899999999999999999999999999999999999999999


Q ss_pred             HHHH-----HHHHHHcCCC----CCCccc--------------------------------------------CCChHHH
Q 010590          360 LRTL-----TSDFLFKGAV----PGLTHI--------------------------------------------EPNKLRL  386 (506)
Q Consensus       360 A~~~-----~~~~l~~~~~----~~~~~~--------------------------------------------~~~~~~~  386 (506)
                      |...     ..........    .+....                                            ..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            9731     1111111110    000000                                            0122233


Q ss_pred             HHHHHHhccCccccccCCCCCCCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcch
Q 010590          387 CLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHH  466 (506)
Q Consensus       387 ~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH  466 (506)
                      +..+++.|.+++.           .+..|.||||+|+...           ....+++++  +.++++|.+|.+|+||||
T Consensus       160 ~~~~~~~~~~~~~-----------~d~~g~t~L~~A~~~g-----------~~~~v~~Ll--~~Gad~n~~d~~G~TpL~  215 (228)
T d1k1aa_         160 VQLLLQHGANVNA-----------QMYSGSSALHSASGRG-----------LLPLVRTLV--RSGADSSLKNCHNDTPLM  215 (228)
T ss_dssp             HHHHHHTTCCTTC-----------BCTTSCBHHHHHHHHT-----------CHHHHHHHH--HTTCCTTCCCTTSCCTTT
T ss_pred             hhhhhhhcccccc-----------ccccCcchHHHHHHcC-----------CHHHHHHHH--HCCCCCCCCCCCCCCHHH
Confidence            4444444444444           4667889999985322           233445555  345899999999999999


Q ss_pred             hhhhcC
Q 010590          467 HHHQMG  472 (506)
Q Consensus       467 ~Aa~~g  472 (506)
                      +|+++|
T Consensus       216 ~A~~~~  221 (228)
T d1k1aa_         216 VARSRR  221 (228)
T ss_dssp             TCSSHH
T ss_pred             HHHhCC
Confidence            999887

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.3e-21  Score=169.60  Aligned_cols=121  Identities=22%  Similarity=0.290  Sum_probs=108.0

Q ss_pred             cHHHHHHHhcCCHHHHHHHHhcCCCCC-----------CChHHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCh
Q 010590          257 IRRMRRALDSSDVELVKLMVMGEGLNL-----------DEALALHYAVEN---CSREVVKALLELGAADVNYPAGPAGKT  322 (506)
Q Consensus       257 ~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----------~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~v~~~~~~~g~t  322 (506)
                      ...|+.|++.+++..+..++ ..|+|+           .|+||||+|+..   |+.++|++|+++|+ ++|.+| ..|+|
T Consensus         7 l~~L~~Av~~~dl~~l~~~~-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-din~~d-~~g~T   83 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAY-ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-NLDKQT-GKGST   83 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-CTTCCC-TTCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHH-HcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC-Chhhhh-hhhcc
Confidence            45677899999999998888 455432           489999999985   67899999999999 999999 89999


Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcc
Q 010590          323 PLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVL  398 (506)
Q Consensus       323 pLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~  398 (506)
                      |||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.                  .++.+++.+|++.++...
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~------------------~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR------------------LKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccccccCccccccCCCCCCHHHHHHH------------------cCCHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999999998                  789999999999876433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-22  Score=168.99  Aligned_cols=95  Identities=29%  Similarity=0.325  Sum_probs=87.3

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHH
Q 010590          285 EALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGV-TPLDILRTL  363 (506)
Q Consensus       285 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-tpLh~A~~~  363 (506)
                      +.++||+|+..|+.++|++|+++|+ ++|.++ ..|+||||+|+ .|+.+++++|+++|++++.+|..|. ||||+|+. 
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~ga-d~n~~~-~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~-   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGA-NPNAPN-SYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR-   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTC-CTTCCC-SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH-
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCC-cccccc-ccccccccccc-cccccccccccccccccccccccccccccccccc-
Confidence            4689999999999999999999999 999999 89999999775 7999999999999999999999876 69999998 


Q ss_pred             HHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          364 TSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                                       .++.+++++|+++|++++.+
T Consensus        79 -----------------~g~~~~v~~Ll~~ga~~~~~   98 (125)
T d1bi7b_          79 -----------------EGFLDTLVVLHRAGARLDVR   98 (125)
T ss_dssp             -----------------HTCHHHHHHHHHHTCCSSCC
T ss_pred             -----------------cccccccccccccccccccc
Confidence                             68899999999999877654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-21  Score=166.17  Aligned_cols=120  Identities=23%  Similarity=0.295  Sum_probs=109.8

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      ..|..|+||||+|+. |+.+++++|+ +.+.++     +|.+||++++..++.++++.++++|+ ++|.+| ..|+||||
T Consensus        31 ~~d~~g~t~L~~A~~-~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~n~~~-~~~~t~L~  106 (156)
T d1bd8a_          31 ALNRFGKTALQVMMF-GSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-DVNVPD-GTGALPIH  106 (156)
T ss_dssp             CCCTTSCCHHHHSCT-TCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCC-TTSCCHHH
T ss_pred             ccCCCCCcccccccc-cccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccc-CCCCeeec
Confidence            458899999999875 8899999999 566654     48999999999999999999999999 999998 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHh
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQS  393 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~  393 (506)
                      +|++.|+.+++++|+ .|++++.+|.+|+||||+|+.                  .++.+++++|+++
T Consensus       107 ~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~------------------~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         107 LAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ------------------RGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHH------------------SCCHHHHHHHHTT
T ss_pred             ccccccccccccccc-ccccccccCCCCCCHHHHHHH------------------cCCHHHHHHHHhh
Confidence            999999999999887 789999999999999999998                  7899999999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.9e-21  Score=161.37  Aligned_cols=97  Identities=25%  Similarity=0.275  Sum_probs=92.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHH
Q 010590          286 ALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTS  365 (506)
Q Consensus       286 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~  365 (506)
                      .++||.||..|+.++|++|+++|+ |+|.+| ..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.   
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~-d~n~~d-~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~---   76 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVD-DPSLPN-DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS---   76 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTS-SCCCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH---
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCC-Cccccc-cccccccccccccccccccccccccccccccccccCcccccccch---
Confidence            378999999999999999999999 999999 899999999999999999999999999999999999999999998   


Q ss_pred             HHHHcCCCCCCcccCCChHHHHHHHHHhccCcccccc
Q 010590          366 DFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREE  402 (506)
Q Consensus       366 ~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~  402 (506)
                                     .++.+++++|+++|++++.++.
T Consensus        77 ---------------~g~~~~v~~Ll~~ga~v~~~~~   98 (130)
T d1ycsb1          77 ---------------CNNVQVCKFLVESGAAVFAMTY   98 (130)
T ss_dssp             ---------------TTCHHHHHHHHHTTCCTTCCCS
T ss_pred             ---------------hhHHHHHHHHHHcCCCcccccC
Confidence                           7899999999999999998753

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-20  Score=180.63  Aligned_cols=131  Identities=26%  Similarity=0.296  Sum_probs=115.9

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCCC-----ChHHHHHHHHc----CCHHHHHHHHHcCCCCCCCCCCCCCC
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLD-----EALALHYAVEN----CSREVVKALLELGAADVNYPAGPAGK  321 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~~-----g~t~Lh~A~~~----g~~~~v~~Ll~~g~~~v~~~~~~~g~  321 (506)
                      ..+..|.||||+|+..|+.+++++|++..|++++     |.++++.+...    +..+++++|+++|+ +++.++ ..|.
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga-~~n~~~-~~g~  220 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRG-ERGK  220 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCC-TTSC
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCC-CCCccC-CCCC
Confidence            3466789999999999999999999976677663     66666655443    34579999999999 999998 8999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          322 TPLHIAAEMVSPDMVAVLLDH-HADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       322 tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      ||||+|+..|+.+++++|++. |+++|.+|.+|.||||+|+.                  .++.+++++|+++|||+|++
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~------------------~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE------------------LKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHHSSCSCCS
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCCCcc
Confidence            999999999999999999985 99999999999999999998                  78999999999999999998


Q ss_pred             c
Q 010590          401 E  401 (506)
Q Consensus       401 ~  401 (506)
                      |
T Consensus       283 d  283 (285)
T d1wdya_         283 D  283 (285)
T ss_dssp             S
T ss_pred             c
Confidence            6

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.4e-21  Score=189.38  Aligned_cols=136  Identities=16%  Similarity=0.180  Sum_probs=108.9

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCH-------HHHHHHHHcCCCCCCCCCCCC
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSR-------EVVKALLELGAADVNYPAGPA  319 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~-------~~v~~Ll~~g~~~v~~~~~~~  319 (506)
                      .|..|+||||+||..|+.++|++|| +.|+|+     .|+||||+||..++.       +++++|.   . +++.+| ..
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~-~~~~~d-~~  176 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---P-CLILED-SM  176 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---G-GGGEEC-TT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---h-hhhhcc-cc
Confidence            4789999999999999999999999 778866     499999999987752       3444443   3 566777 89


Q ss_pred             CChHHHHHHHhCC----HH--------HHHHHHHCCCC-------------------------------------CCCCC
Q 010590          320 GKTPLHIAAEMVS----PD--------MVAVLLDHHAD-------------------------------------PNVRT  350 (506)
Q Consensus       320 g~tpLh~A~~~~~----~~--------~v~~Ll~~ga~-------------------------------------~~~~d  350 (506)
                      |+||||+|+..+.    ..        ++.+++..+..                                     +|.+|
T Consensus       177 g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D  256 (301)
T d1sw6a_         177 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD  256 (301)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCC
T ss_pred             cCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCC
Confidence            9999999986543    22        33344444332                                     78999


Q ss_pred             CCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCC
Q 010590          351 VDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMS  422 (506)
Q Consensus       351 ~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a  422 (506)
                      .+|+||||+|++                  .++.+++++|++.|||++.+           |..|.|||++|
T Consensus       257 ~~G~TpLh~A~~------------------~g~~~iv~~Ll~~GAd~~~~-----------n~~G~Tpl~~A  299 (301)
T d1sw6a_         257 SNGDTCLNIAAR------------------LGNISIVDALLDYGADPFIA-----------NKSGLRPVDFG  299 (301)
T ss_dssp             TTSCCHHHHHHH------------------HCCHHHHHHHHHTTCCTTCC-----------CTTSCCGGGGT
T ss_pred             CCCCCHHHHHHH------------------cCCHHHHHHHHHCCCCCCCC-----------CCCCCCHHHHc
Confidence            999999999998                  78999999999999999998           55677999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.3e-21  Score=191.75  Aligned_cols=170  Identities=20%  Similarity=0.210  Sum_probs=140.2

Q ss_pred             ccchhHHHhhcccccccccccccccccccCCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCC
Q 010590          223 HKSSLARRSLISHHHHHHHHDLSAAAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCS  297 (506)
Q Consensus       223 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~  297 (506)
                      +.+|+.........................+..|.|||++|+..++.++++.++ ..+.     +.+|.|||+.|+..++
T Consensus       198 ~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~l~~a~~~~~  276 (408)
T d1n11a_         198 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL-SKQANGNLGNKSGLTPLHLVAQEGH  276 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhh-ccccccccccCCCCChhhhhhhcCc
Confidence            345554443333222222222333444456778899999999999999999999 4443     4468999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCc
Q 010590          298 REVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLT  377 (506)
Q Consensus       298 ~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~  377 (506)
                      .+++++|++.|+ +++..+ ..+.||||.|+..++.++++++++.|+++|.+|.+|+||||+|++               
T Consensus       277 ~~i~~~Ll~~g~-~~~~~~-~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~---------------  339 (408)
T d1n11a_         277 VPVADVLIKHGV-MVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ---------------  339 (408)
T ss_dssp             HHHHHHHHHHTC-CTTCCC-SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHH---------------
T ss_pred             HHHHHHHHHCCC-cccccc-ccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHH---------------
Confidence            999999999999 999998 899999999999999999999999999999999999999999998               


Q ss_pred             ccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCcc
Q 010590          378 HIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSCC  424 (506)
Q Consensus       378 ~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~~  424 (506)
                         .++.+++++|+++|||++.+           |..|.||||+|.+
T Consensus       340 ---~g~~~iv~~Ll~~GAd~n~~-----------d~~G~t~L~~A~~  372 (408)
T d1n11a_         340 ---QGHTDIVTLLLKNGASPNEV-----------SSDGTTPLAIAKR  372 (408)
T ss_dssp             ---TTCHHHHHHHHHTTCCSCCC-----------CSSSCCHHHHHHH
T ss_pred             ---cCCHHHHHHHHHCCCCCCCC-----------CCCCCCHHHHHHH
Confidence               78999999999999999988           5567799999844

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6e-20  Score=159.32  Aligned_cols=123  Identities=22%  Similarity=0.248  Sum_probs=113.4

Q ss_pred             ccCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHH
Q 010590          250 ADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPL  324 (506)
Q Consensus       250 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpL  324 (506)
                      ...|..|.||||+|+ .|+.+++++|+ +.|+++     +|.+||+.++..++.++++.|++.+. +++..+ ..|.+||
T Consensus        28 n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~~~~~l  103 (156)
T d1ihba_          28 NAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-DVNIED-NEGNLPL  103 (156)
T ss_dssp             TCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCC-TTSCCHH
T ss_pred             CccCCcccccccccc-ccccccccccc-ccccccccccccCcccccccccccccccccccccccc-cccccc-ccccccc
Confidence            346889999999886 79999999999 677655     48999999999999999999999999 999998 8999999


Q ss_pred             HHHHHhCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhc
Q 010590          325 HIAAEMVSPDMVAVLLDHHA-DPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSA  394 (506)
Q Consensus       325 h~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~g  394 (506)
                      |+|+..++.+++++|+++|+ +++.+|.+|+||||+|+.                  .++.+++++|+++|
T Consensus       104 ~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~------------------~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         104 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL------------------YGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHH------------------cCCHHHHHHHHhcC
Confidence            99999999999999999976 899999999999999998                  78999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.1e-19  Score=157.02  Aligned_cols=118  Identities=23%  Similarity=0.222  Sum_probs=107.5

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHhcCCC-----CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHH
Q 010590          252 LEDQKIRRMRRALDSSDVELVKLMVMGEGL-----NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHI  326 (506)
Q Consensus       252 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~  326 (506)
                      .|..|.||||+|+..++.++++.++. ...     +..+.++++.++...+.+++++++.+|+ +++.++ ..|+||||+
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-~~g~T~L~~  106 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKD-MLKMTALHW  106 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCC-TTSCCHHHH
T ss_pred             cccCCCcccccccccccccccccccc-ccccccccccccccccccccccccceeeecccccCC-cccccc-ccCchHHHh
Confidence            47889999999999999999999983 322     2247789999999999999999999999 999998 899999999


Q ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHH
Q 010590          327 AAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLEL  390 (506)
Q Consensus       327 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  390 (506)
                      |+..|+.+++++|+++|+|++.+|.+|.||||+|+.                  .++.+++++|
T Consensus       107 A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~------------------~g~~eiv~lL  152 (153)
T d1awcb_         107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID------------------NGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHH
T ss_pred             hhhcchhheeeeccccccCCcccCCCCCCHHHHHHH------------------cCCHHHHHhC
Confidence            999999999999999999999999999999999998                  7888887755

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.9e-21  Score=186.17  Aligned_cols=163  Identities=13%  Similarity=0.018  Sum_probs=106.5

Q ss_pred             CCCChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHHHHHHhCCH-------HHHHHHHHCCCCCCCCCCCCC
Q 010590          282 NLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSP-------DMVAVLLDHHADPNVRTVDGV  354 (506)
Q Consensus       282 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~-------~~v~~Ll~~ga~~~~~d~~g~  354 (506)
                      |.+|+||||+||..|+.++|++||++|+ +++.+| ..|+||||.|+..++.       +++++|.   .+++.+|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga-d~~~~d-~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYGD-NMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBCC-TTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCcCC-cccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccC
Confidence            4569999999999999999999999999 999999 8999999999987652       3444443   45777899999


Q ss_pred             cHHHHHHHHHHHHHHcCCCCCCcccCCC-hHHHHHHHHHhccCccccccCCC--------------------------CC
Q 010590          355 TPLDILRTLTSDFLFKGAVPGLTHIEPN-KLRLCLELVQSAALVLSREEGIL--------------------------NE  407 (506)
Q Consensus       355 tpLh~A~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~Ll~~ga~~~~~~~~~~--------------------------~~  407 (506)
                      ||||+++.....       ......... ...++..+++.+...........                          ..
T Consensus       179 t~lh~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         179 TILHHIIITSGM-------TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             CHHHHHHHHHTS-------TTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             CHHHHHHHHhCc-------cccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            999998842210       000000000 00112222333322211111000                          01


Q ss_pred             CCCCCccccCCCCCCccCccCCCCCCCCCccccccccccCCCcceeeccCCCCCCCcchhhh
Q 010590          408 PSSSTATVIYPPPMSCCSEEVHNNSSSGSATINNNSLNLDSSRLVYLNLGAGTGNSAHHHHH  469 (506)
Q Consensus       408 ~~~~~~~~~tplh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~D~~G~T~LH~Aa  469 (506)
                      ++..|..|.||||+|+..           +...++++++  +.++++|.+|+.|+||||+||
T Consensus       252 in~~D~~G~TpLh~A~~~-----------g~~~iv~~Ll--~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARL-----------GNISIVDALL--DYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHH-----------CCHHHHHHHH--HTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHc-----------CCHHHHHHHH--HCCCCCCCCCCCCCCHHHHcC
Confidence            344577889999998532           2344556666  356889999999999999997

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.4e-19  Score=153.48  Aligned_cols=93  Identities=19%  Similarity=0.153  Sum_probs=83.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC------CCCCCChHHHHHHHh---CCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 010590          288 ALHYAVENCSREVVKALLELGAADVNYP------AGPAGKTPLHIAAEM---VSPDMVAVLLDHHADPNVRTVDGVTPLD  358 (506)
Q Consensus       288 ~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~------~~~~g~tpLh~A~~~---~~~~~v~~Ll~~ga~~~~~d~~g~tpLh  358 (506)
                      .|..|+..+....+..++..|+ |++.+      + ..|+||||+|++.   |+.+++++|+++|+++|.+|.+|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~-d~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGV-DLTEKIPLANGH-EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC-CTTSBCCCSSCS-STTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCC-CcCCCCCcccCC-CCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            4567889999999999999998 87765      4 6899999999975   6789999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCcccc
Q 010590          359 ILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSR  400 (506)
Q Consensus       359 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~  400 (506)
                      +|+.                  .++.+++++|+++|++++.+
T Consensus        87 ~A~~------------------~~~~~~v~~Ll~~gad~~~~  110 (154)
T d1dcqa1          87 YCCL------------------TDNAECLKLLLRGKASIEIA  110 (154)
T ss_dssp             HHHH------------------TTCHHHHHHHHHTTCCTTCC
T ss_pred             cccc------------------cccccccccccccCcccccc
Confidence            9998                  78999999999999988765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=6.5e-17  Score=146.68  Aligned_cols=119  Identities=20%  Similarity=0.173  Sum_probs=108.2

Q ss_pred             cCCccccHHHHHHHhcCCHHHHHHHHhcCCCCC-----CChHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCChHHH
Q 010590          251 DLEDQKIRRMRRALDSSDVELVKLMVMGEGLNL-----DEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLH  325 (506)
Q Consensus       251 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~v~~~~~~~g~tpLh  325 (506)
                      .....|.++.+.+.........+.|+ ..++++     .|+|||++++..+...+++.|++.+. +++..| ..|.||||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~-~~~~~d-~~g~TpL~  161 (209)
T d1ot8a_          85 ARMHDGTTPLILAARLAIEGMVEDLI-TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA-NRDAQD-DKDETPLF  161 (209)
T ss_dssp             CCCTTCCCHHHHHHHTTCTTHHHHHH-HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCC-TTCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhh-hhcccccccCCCCCCcchhhcccCcceeeeeeccccc-cccccc-cccccccc
Confidence            34556788999999999999999998 555543     58999999999999999999999999 999999 89999999


Q ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCCcccCCChHHHHHHH
Q 010590          326 IAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLEL  390 (506)
Q Consensus       326 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpLh~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  390 (506)
                      +|+..|+.++|++|+++|||++.+|..|+||||+|++                  .++.+++++|
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~------------------~~~~~iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASE------------------RLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------------------TTCHHHHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH------------------cCCHHHHhhc
Confidence            9999999999999999999999999999999999998                  7888988865

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.69  E-value=4.6e-19  Score=174.79  Aligned_cols=113  Identities=10%  Similarity=0.017  Sum_probs=92.6

Q ss_pred             CCChHHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHCCCCCCCCC--CCCCcHH
Q 010590          283 LDEALALHYAVENCSREVVKA---LLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRT--VDGVTPL  357 (506)
Q Consensus       283 ~~g~t~Lh~A~~~g~~~~v~~---Ll~~g~~~v~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d--~~g~tpL  357 (506)
                      .+|.||||+||.+|+.+++++   |++.|+ ++|.+| ..|+||||+||+.|+.++|++|+++|++++..+  .+|+|||
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~-~in~~~-~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCS-SCC--C-HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCC-cccccC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            468999999999999887765   789999 999999 899999999999999999999999999998876  4699999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcccCCChHHHHHHHHHhccCccccccCCCCCCCCCCccccCCCCCCc
Q 010590          358 DILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGILNEPSSSTATVIYPPPMSC  423 (506)
Q Consensus       358 h~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~tplh~a~  423 (506)
                      |+|+.                  .++.+++++|++.|++....+.        .+..+.||+|.|+
T Consensus       166 ~~Aa~------------------~g~~~iv~~Ll~~~~~~~~~~~--------~~~~~~t~l~~A~  205 (346)
T d2ajaa1         166 RLAAE------------------NGHLHVLNRLCELAPTEATAMI--------QAENYYAFRWAAV  205 (346)
T ss_dssp             HHHHH------------------TTCHHHHHHHHHSCGGGHHHHH--------HHHHHHHHHHHHS
T ss_pred             HHHHH------------------HhhHHHHHHHHHcCCccccccc--------ccCCCcchhhHHh
Confidence            99998                  8999999999999987643321        1234567777763

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0022  Score=48.67  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=48.2

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+++- +|.+|.+.+.+ |..|..++.||.+.+.|+                     ...|+|++|+..+++.+++|++-
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~---------------------~~~Ipl~~V~s~iL~kViey~~~   63 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES---------------------KGRIELKQFDSHILEKAVEYLNY   63 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC---------------------TTEEEETTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCC---------------------cCccccCCCChHHHHHHHHHHHH
Confidence            56655 78899999999 578999999998766553                     36799999999999999999974

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0026  Score=47.89  Aligned_cols=57  Identities=16%  Similarity=0.209  Sum_probs=41.8

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCC--CCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhh
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPD--PPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFL  103 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~  103 (506)
                      |+|+- +|..|.+.|.+ |..|+.++.||.+..  .|+                    ....|+|++|+..+++.+++|+
T Consensus         3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~--------------------~~~~IpL~nV~s~iL~kViey~   61 (96)
T d2c9wc1           3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAEN--------------------ETNEVNFREIPSHVLSKVCMYF   61 (96)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHC--------------------------------CEEECTTCCHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccC--------------------CCCeeECCCCCHHHHHHHHHHH
Confidence            44544 78899999999 689999999996532  222                    3468999999999999999999


Q ss_pred             h
Q 010590          104 Y  104 (506)
Q Consensus       104 Y  104 (506)
                      +
T Consensus        62 ~   62 (96)
T d2c9wc1          62 T   62 (96)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.02  E-value=0.003  Score=48.20  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             EEEEECCeEEeeeehhhcccCH-HHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSVEGRLVHAHRCILAARSL-FFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S~-yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|-|||+.|...+..|..... +|..++........                   ....+-+ +=+|..|+.||.|+.+
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~-------------------~~~~~fi-DRdp~~F~~IL~ylR~   63 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDP-------------------VLNEYFF-DRHPGVFAQIINYYRS   63 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEET-------------------TTTEEEE-CSCTTTHHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCC-------------------CCCcEEe-cCCHHHHHHHHHHHcc
Confidence            6889999999999999976543 44444443221110                   2345666 5699999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQ  152 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~  152 (506)
                      |++.++...      |                ...++..|+.|+++.
T Consensus        64 g~l~~p~~~------~----------------~~~l~~Ea~yygi~~   88 (103)
T d3kvta_          64 GKLHYPTDV------C----------------GPLFEEELEFWGLDS   88 (103)
T ss_dssp             SCBCCCSSS------C----------------HHHHHHHHHHHTCCG
T ss_pred             CCccccccc------C----------------HHHHHHHHHHcCCCH
Confidence            998876443      1                345788899998853

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=94.98  E-value=0.0075  Score=45.58  Aligned_cols=84  Identities=11%  Similarity=-0.017  Sum_probs=58.4

Q ss_pred             EEEEECCeEEeeeehhhccc-CHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSVEGRLVHAHRCILAAR-SLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~-S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|-|||+.|..-+..|... +.+|.+|+........                   ....+-+ +-+|..|+.||+|+-|
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~-------------------~~g~~Fi-DRdp~~F~~IL~flR~   62 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDP-------------------LRNEYFF-DRNRPSFDAILYFYQS   62 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEET-------------------TTTEEEE-CSCSTTHHHHHHHHHT
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCC-------------------CCCeEEE-ecCHHHHHHHHHHHhc
Confidence            78899999999999999764 5566666643221100                   2356777 4589999999999998


Q ss_pred             c-ceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHH
Q 010590          106 G-QVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQ  152 (506)
Q Consensus       106 g-~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~  152 (506)
                      | .+..+...      |                ...+...|+.|+++.
T Consensus        63 ~~~l~~~~~~------~----------------~~~l~~Ea~y~gi~~   88 (100)
T d1t1da_          63 GGRLRRPVNV------P----------------LDVFSEEIKFYELGE   88 (100)
T ss_dssp             TSCCCCCTTS------C----------------HHHHHHHHHHTTCCH
T ss_pred             CCCcCCCCcc------c----------------HHHHHHHHHHcCCCH
Confidence            5 44433221      1                356788899999865

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.95  E-value=0.0045  Score=47.39  Aligned_cols=83  Identities=13%  Similarity=0.135  Sum_probs=57.6

Q ss_pred             EEEEECCeEEeeeehhhcccCH-HHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSVEGRLVHAHRCILAARSL-FFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v~~~~~~aHr~vLaa~S~-yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|.|||+.|...+..|+.... +|..++...+...                    ....+=+ +=+|..|+.||+|+.+
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~--------------------~~~~~Fi-DRdp~~F~~IL~ylR~   60 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHP--------------------ETQQYFF-DRDPDIFRHILNFYRT   60 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEG--------------------GGTEEEE-CSCTTTHHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCC--------------------CCCcEEE-eCCHHHHHHHHHHHhc
Confidence            7899999999999999975443 3333332211110                    2345555 4589999999999999


Q ss_pred             cceeccCCCCCCcCCccccCccCccchhHHHHHHHHHHHHHhhCHHH
Q 010590          106 GQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQ  152 (506)
Q Consensus       106 g~~~~~~~~~~~~~~c~~~l~~~l~c~~~~~~~~~L~~~A~~~~~~~  152 (506)
                      |++.+.+..      |                ...++..|+.|+++.
T Consensus        61 G~l~~p~~~------~----------------~~~l~~Ea~fygi~~   85 (105)
T d1nn7a_          61 GKLHYPRHE------C----------------ISAYDEELAFFGLIP   85 (105)
T ss_dssp             SCBCCCTTS------C----------------HHHHHHHHHHHTCCS
T ss_pred             CccccCCCc------c----------------HHHHHHHHHHcCCCH
Confidence            998876543      1                345788899999864

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.027  Score=38.06  Aligned_cols=54  Identities=13%  Similarity=0.276  Sum_probs=44.0

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|+. +|..|.+-+.+ |..|...+.|+.+..                        ...|+|++|+..+++.+++|++-
T Consensus         3 I~L~SsDg~~f~v~~~~-a~~S~tI~~ml~~~~------------------------~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG------------------------MDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC------------------------CSSEECTTCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHHH-HHHhHHHHHHHhcCC------------------------CCCcccCCcCHHHHHHHHHHHHH
Confidence            45554 78899999985 588999999996421                        24599999999999999999974

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.037  Score=38.76  Aligned_cols=62  Identities=21%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             EEEEE-CCeEEeeeehhhcccCHHHHHhhCCCCCCCCCCCCccccCCCCCCCCCCCCCceEEcCCCCHHHHHHHhhhhhc
Q 010590           27 VTFSV-EGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPATASRINQGPPSPASRPTGVIPVNSVGYEVFLLLLQFLYS  105 (506)
Q Consensus        27 v~~~v-~~~~~~aHr~vLaa~S~yF~~~f~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~i~~~~~~~ll~f~Yt  105 (506)
                      |+|+- +|.+|.+-|.+. ..|..-+.|+.....++....                ....|.|++|+..+++.+++|++.
T Consensus         3 I~L~SsDg~~F~v~~~~a-~~S~tIk~ml~~~~~~~~~~~----------------~~~~Ipl~~V~s~iL~kVieyc~~   65 (72)
T d1nexa2           3 VVLVSGEGERFTVDKKIA-ERSLLLKNYLNDMGDDDDEDD----------------DEIVMPVPNVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             EEEECTTSCEEEEEHHHH-TTSHHHHHTC-----------------------------CEEECTTCCHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCEEEecHHHH-HHHHHHHHHHHhcCccccccC----------------CCCcccCCCcCHHHHHHHHHHHHH
Confidence            56665 788999999865 889999999965332221000                235799999999999999999975