Citrus Sinensis ID: 010631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLEAHM
ccEEcHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccEEccccccccHHHHHHHHHHHHHHHHHcc
cccEEEEEEccHHHHcccEccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHcccccEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHEEEEccccEEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHcccccccccEEcccccHHHHHHccHHHHHccEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccEcHHHHHcHHHHHHHHHHHHHHHHccc
mwchcrmvylpmsylygkrfvgpitPTVLALRKELftvpyheidwnearnlcakedlyyphpliqDVLWATLDKVVEpllmhwpgkKLREKALRNAIKHIhyedentrylcigPVNKVLNMLCCwvedpnseafklhiprindYLWIaedgmkvqgyngsqlWDTAFAVQAIISTNLVEEYGATLKKAHKYIkdsqvledcpgnlDFWYRhiskgawpfstadhgwpisdctseGLKASLLLSKLSsaivgepietkrlyDSVNVIFSLqnadggfatyelmrsypwlevlnpaetfgdividypcvectSASIQALTSfkklypghwqeDVDHCIKRAVKFIEKIQEldgswygswgvcftygtwfGVKGLVAAgmnysnssSIRKACEFLLskqrpsggwgesYLSCQKKVysnlegdrshVVNTAWAMLALIDagqaetdptplHRAARYLINsqmengdypqeeimgvfnrncmiSYSAYRNIFPIWALGEYRCRVLEAHM
MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHihyedentryLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKqrpsggwgeSYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLEAHM
MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGlkaslllsklssaIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLEAHM
*WCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVL****
MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLS******PIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVL*A**
MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLEAHM
MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLEAHM
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MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIFPIWALGEYRCRVLEAHM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query505 2.2.26 [Sep-21-2011]
Q8W3Z3757 Cycloartenol synthase 2 O N/A no 0.974 0.649 0.842 0.0
Q2XPU6759 Cycloartenol synthase OS= N/A no 0.974 0.648 0.833 0.0
P38605759 Cycloartenol synthase OS= yes no 0.970 0.645 0.824 0.0
Q9SXV6757 Cycloartenol synthase OS= N/A no 0.976 0.651 0.821 0.0
O82139758 Cycloartenol Synthase OS= N/A no 0.974 0.649 0.813 0.0
Q8W3Z4767 Cycloartenol synthase OS= N/A no 0.950 0.625 0.799 0.0
E2IUB0764 Cycloartenol synthase OS= N/A no 0.974 0.643 0.799 0.0
Q6BE25766 Cycloartenol synthase OS= N/A no 0.972 0.640 0.796 0.0
Q9SLP9765 Cycloartenol synthase OS= N/A no 0.974 0.643 0.789 0.0
Q6Z2X6759 Cycloartenol synthase OS= yes no 0.974 0.648 0.767 0.0
>sp|Q8W3Z3|CAS2_BETPL Cycloartenol synthase 2 OS=Betula platyphylla GN=CASBPX2 PE=1 SV=1 Back     alignment and function desciption
 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/503 (84%), Positives = 466/503 (92%)

Query: 1   MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
           MWCHCRMVYLPMSYLYGKRFVGPITPTV++LRKEL++VPYHEIDWN+ARNLCAKE LYYP
Sbjct: 254 MWCHCRMVYLPMSYLYGKRFVGPITPTVMSLRKELYSVPYHEIDWNQARNLCAKEXLYYP 313

Query: 61  HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
           HPL+QD+LWA+L K+VEP+LM WPGK+LREKALR  ++HIHYEDENTRY+CIGPVNKVLN
Sbjct: 314 HPLVQDILWASLHKLVEPVLMRWPGKRLREKALRTVLEHIHYEDENTRYICIGPVNKVLN 373

Query: 121 MLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEE 180
           MLCCWVEDPNSEAFKLH+PRINDYLWIAEDGMK+QGYNGSQLWDTAFAVQAIISTNL EE
Sbjct: 374 MLCCWVEDPNSEAFKLHLPRINDYLWIAEDGMKMQGYNGSQLWDTAFAVQAIISTNLFEE 433

Query: 181 YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240
           YG TL+KAH YIK SQV EDCPG+LDFWYRHISKGAWPFSTADHGWPISDCT+EGLKA+L
Sbjct: 434 YGPTLEKAHMYIKKSQVREDCPGDLDFWYRHISKGAWPFSTADHGWPISDCTAEGLKAAL 493

Query: 241 LLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDI 300
           LLSK+   +VGEP+  +RLYD+VNVI SLQNADGGFATYEL RSYPWLE++NPAETFGDI
Sbjct: 494 LLSKIPPDVVGEPLVEERLYDAVNVILSLQNADGGFATYELTRSYPWLELINPAETFGDI 553

Query: 301 VIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC 360
           VIDY  VECTSA+IQALTSFKK YP H +E+VD CIKRA  F EKIQ  DGSWYGSWGVC
Sbjct: 554 VIDYNYVECTSAAIQALTSFKKSYPKHREEEVDVCIKRAAMFTEKIQASDGSWYGSWGVC 613

Query: 361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGD 420
           FTYGTWFGVKGLVAAG N+++   IRKAC+FLLSKQ PSGGWGESYLSCQ KVYS++EG+
Sbjct: 614 FTYGTWFGVKGLVAAGKNFNDCFGIRKACDFLLSKQLPSGGWGESYLSCQNKVYSHVEGN 673

Query: 421 RSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMIS 480
           RSHVVNT WAMLALI+AGQAE DPTPLHRAAR LINSQMENGD+PQEEIMGVFNRNCMI+
Sbjct: 674 RSHVVNTGWAMLALIEAGQAERDPTPLHRAARVLINSQMENGDFPQEEIMGVFNRNCMIT 733

Query: 481 YSAYRNIFPIWALGEYRCRVLEA 503
           Y+AYRNIFPIWALGEYRCRVL+A
Sbjct: 734 YAAYRNIFPIWALGEYRCRVLQA 756
Oxidosqualene cyclase converting oxidosqualene to cycloartenol.
Betula platyphylla (taxid: 78630)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 8
>sp|Q2XPU6|CAS1_RICCO Cycloartenol synthase OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|P38605|CAS1_ARATH Cycloartenol synthase OS=Arabidopsis thaliana GN=CAS1 PE=1 SV=2 Back     alignment and function description
>sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase OS=Glycyrrhiza glabra GN=GgCAS1 PE=1 SV=1 Back     alignment and function description
>sp|O82139|CAS1_PANGI Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z4|CAS1_BETPL Cycloartenol synthase OS=Betula platyphylla GN=CASBPX1 PE=1 SV=1 Back     alignment and function description
>sp|E2IUB0|CASS_KALDA Cycloartenol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q6BE25|CAS1_CUCPE Cycloartenol synthase OS=Cucurbita pepo GN=CPX PE=1 SV=1 Back     alignment and function description
>sp|Q9SLP9|CAS1_LUFCY Cycloartenol synthase OS=Luffa cylindrica GN=CAS1 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z2X6|CAS_ORYSJ Cycloartenol synthase OS=Oryza sativa subsp. japonica GN=Os02g0139700 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
443299069 758 cycloartenol synthase protein [Azadirach 0.974 0.649 0.868 0.0
225445642 766 PREDICTED: cycloartenol Synthase isoform 0.974 0.642 0.840 0.0
225445640 760 PREDICTED: cycloartenol Synthase isoform 0.974 0.647 0.840 0.0
224087349 761 predicted protein [Populus trichocarpa] 0.996 0.660 0.840 0.0
224118726 742 predicted protein [Populus trichocarpa] 0.996 0.677 0.833 0.0
75248720 757 RecName: Full=Cycloartenol synthase 2 gi 0.974 0.649 0.842 0.0
122210890 759 RecName: Full=Cycloartenol synthase; Sho 0.974 0.648 0.833 0.0
297831748 759 cycloartenol synthase [Arabidopsis lyrat 0.992 0.660 0.828 0.0
83016479 757 cycloartenol synthase [Lotus japonicus] 0.996 0.664 0.827 0.0
15225650 759 cycloartenol synthase [Arabidopsis thali 0.992 0.660 0.824 0.0
>gi|443299069|gb|AGC82085.1| cycloartenol synthase protein [Azadirachta indica] Back     alignment and taxonomy information
 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/503 (86%), Positives = 474/503 (94%)

Query: 1   MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
           MWCHCRMVYLPMSYLYGKRFVGPITPTVL+LRKEL+TVPYHEI+W+EARNLCAKEDLYYP
Sbjct: 254 MWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELYTVPYHEINWDEARNLCAKEDLYYP 313

Query: 61  HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
           HPL+QDVLWA+L KVVEP+LMHWPGKKLREKALR AI+HIHYEDENTRY+CIGPVNKVLN
Sbjct: 314 HPLVQDVLWASLKKVVEPILMHWPGKKLREKALRTAIEHIHYEDENTRYICIGPVNKVLN 373

Query: 121 MLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEE 180
           MLCCWVEDPNSEAFKLHIPRI DYLW+AEDGMK+QGYNGSQLWDTAF VQAIISTNL EE
Sbjct: 374 MLCCWVEDPNSEAFKLHIPRIYDYLWLAEDGMKMQGYNGSQLWDTAFTVQAIISTNLAEE 433

Query: 181 YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASL 240
           YG TLKKAH  IK++QVLEDCPGNL+FWYRHISKGAWPFSTADHGWPISDCT+EGLKA+L
Sbjct: 434 YGTTLKKAHMCIKNTQVLEDCPGNLEFWYRHISKGAWPFSTADHGWPISDCTAEGLKAAL 493

Query: 241 LLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDI 300
           LLSKL S +VGEP+ETKRLYD+VNVI SLQNADGGFATYEL RSYPWLE++NPAETFGDI
Sbjct: 494 LLSKLPSEVVGEPVETKRLYDAVNVILSLQNADGGFATYELTRSYPWLELINPAETFGDI 553

Query: 301 VIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC 360
           VIDYP VECTSA+IQALTSFK+LYPGH ++++D CIK+A  FIEKIQ+ DGSWYGSW VC
Sbjct: 554 VIDYPYVECTSAAIQALTSFKELYPGHRRDEIDQCIKKAAMFIEKIQQPDGSWYGSWAVC 613

Query: 361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGD 420
           FTYGTWFGVK LVAAGMNYSN SSIRKAC+FLLSKQRPSGGWGESYLSCQ KVYSNLEGD
Sbjct: 614 FTYGTWFGVKALVAAGMNYSNCSSIRKACDFLLSKQRPSGGWGESYLSCQNKVYSNLEGD 673

Query: 421 RSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMIS 480
           RSHVVNT WAMLALIDA QAE DP PL +AARYLIN+QMENGD+PQ+ IMGVFNRNCMI+
Sbjct: 674 RSHVVNTGWAMLALIDAEQAERDPVPLQKAARYLINTQMENGDFPQQAIMGVFNRNCMIT 733

Query: 481 YSAYRNIFPIWALGEYRCRVLEA 503
           Y+AYRNIFPIWALGEYR RVL+A
Sbjct: 734 YAAYRNIFPIWALGEYRSRVLQA 756

Source: Azadirachta indica

Species: Azadirachta indica

Genus: Azadirachta

Family: Meliaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445642|ref|XP_002264372.1| PREDICTED: cycloartenol Synthase isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225445640|ref|XP_002264289.1| PREDICTED: cycloartenol Synthase isoform 1 [Vitis vinifera] gi|297736039|emb|CBI24077.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224087349|ref|XP_002308131.1| predicted protein [Populus trichocarpa] gi|222854107|gb|EEE91654.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224118726|ref|XP_002331431.1| predicted protein [Populus trichocarpa] gi|222873645|gb|EEF10776.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75248720|sp|Q8W3Z3.1|CAS2_BETPL RecName: Full=Cycloartenol synthase 2 gi|18147592|dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla] Back     alignment and taxonomy information
>gi|122210890|sp|Q2XPU6.1|CAS1_RICCO RecName: Full=Cycloartenol synthase; Short=RcCAS gi|82468805|gb|ABB76767.1| cycloartenol synthase [Ricinus communis] Back     alignment and taxonomy information
>gi|297831748|ref|XP_002883756.1| cycloartenol synthase [Arabidopsis lyrata subsp. lyrata] gi|297329596|gb|EFH60015.1| cycloartenol synthase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|83016479|dbj|BAE53431.1| cycloartenol synthase [Lotus japonicus] Back     alignment and taxonomy information
>gi|15225650|ref|NP_178722.1| cycloartenol synthase [Arabidopsis thaliana] gi|21542399|sp|P38605.2|CAS1_ARATH RecName: Full=Cycloartenol synthase; Short=AtCYC; AltName: Full=2,3-epoxysqualene--cycloartenol cyclase gi|20197302|gb|AAM15015.1| cycloartenol synthase [Arabidopsis thaliana] gi|20453056|gb|AAM19773.1| At2g07050/T4E14.16 [Arabidopsis thaliana] gi|24796994|gb|AAN64509.1| At2g07050/T4E14.16 [Arabidopsis thaliana] gi|330250938|gb|AEC06032.1| cycloartenol synthase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query505
UNIPROTKB|Q2XPU6759 Q2XPU6 "Cycloartenol synthase" 0.996 0.662 0.819 6.3e-243
UNIPROTKB|Q8W3Z3757 CASBPX2 "Cycloartenol synthase 0.996 0.664 0.827 1.7e-242
TAIR|locus:2060121759 CAS1 "cycloartenol synthase 1" 0.992 0.660 0.806 3.2e-239
UNIPROTKB|O82139758 OSCPNX1 "Cycloartenol Synthase 0.994 0.662 0.798 1.2e-237
UNIPROTKB|E2IUB0764 E2IUB0 "Cycloartenol synthase" 0.996 0.658 0.789 4.5e-233
UNIPROTKB|Q8W3Z4767 CASBPX1 "Cycloartenol synthase 0.996 0.655 0.785 2.5e-232
UNIPROTKB|Q6BE25766 CPX "Cycloartenol synthase" [C 0.994 0.655 0.776 2.6e-230
UNIPROTKB|Q6BE24764 CPQ "Cucurbitadienol synthase" 0.992 0.655 0.704 1.1e-213
TAIR|locus:2096905756 LAS1 "lanosterol synthase 1" [ 0.984 0.657 0.665 2.2e-192
UNIPROTKB|Q8W3Z2755 OSCBPW "Lupeol synthase" [Betu 0.994 0.664 0.604 1.7e-176
UNIPROTKB|Q2XPU6 Q2XPU6 "Cycloartenol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 2341 (829.1 bits), Expect = 6.3e-243, P = 6.3e-243
 Identities = 412/503 (81%), Positives = 458/503 (91%)

Query:     1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
             MWCHCRMVYLPMSYLYGKRFVGPITPTVL+LRKEL+TVPYHEIDWN+ARN CAKEDLYYP
Sbjct:   256 MWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELYTVPYHEIDWNQARNQCAKEDLYYP 315

Query:    61 HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
             HP++QDVLWATL K VEP+LMHWPGK+LREKA++ AI+HIHYEDENTRY+CIGPVNKVLN
Sbjct:   316 HPMLQDVLWATLHKFVEPILMHWPGKRLREKAIQTAIEHIHYEDENTRYICIGPVNKVLN 375

Query:   121 MLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVEE 180
             MLCCWVEDPNSEAFKLH+PR+ DYLW+AEDGMK+QGYNGSQLWDTAFAVQAI+STNL+EE
Sbjct:   376 MLCCWVEDPNSEAFKLHLPRLYDYLWLAEDGMKMQGYNGSQLWDTAFAVQAIVSTNLIEE 435

Query:   181 YGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGXXXXX 240
             YG TLKKAH +IK  QVLE+CPG+L+FWYRHISKGAWPFSTADHGWPISDCT+EG     
Sbjct:   436 YGPTLKKAHSFIKKMQVLENCPGDLNFWYRHISKGAWPFSTADHGWPISDCTAEGIKALM 495

Query:   241 XXXXXXXXIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDI 300
                     IVGE +   RLYD+VNV+ SLQN DGGF TYEL RSY WLE +NPAETFGDI
Sbjct:   496 LLSKIPSEIVGEGLNANRLYDAVNVVLSLQNGDGGFPTYELSRSYSWLEFINPAETFGDI 555

Query:   301 VIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVC 360
             VIDYP VECTSA+IQALTSF+K YP H +E+++ CIK+A KF+EKIQ  DGSWYGSWGVC
Sbjct:   556 VIDYPYVECTSAAIQALTSFRKSYPEHQREEIECCIKKAAKFMEKIQISDGSWYGSWGVC 615

Query:   361 FTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGD 420
             FTYGTWFG+KGLVAAG ++ N SSIRKAC+FLLSKQ PSGGWGESYLSCQKKVYSNLEGD
Sbjct:   616 FTYGTWFGIKGLVAAGKSFGNCSSIRKACDFLLSKQCPSGGWGESYLSCQKKVYSNLEGD 675

Query:   421 RSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMIS 480
             RSHVVNTAWAML+LIDAGQAE DPTPLHRAARYLIN+QMENGD+PQ+EIMGVFNRNCMI+
Sbjct:   676 RSHVVNTAWAMLSLIDAGQAERDPTPLHRAARYLINAQMENGDFPQQEIMGVFNRNCMIT 735

Query:   481 YSAYRNIFPIWALGEYRCRVLEA 503
             Y+AYR+IFPIWALGEYRCRVL+A
Sbjct:   736 YAAYRDIFPIWALGEYRCRVLKA 758
GO:0010686 "tetracyclic triterpenoid biosynthetic process" evidence=IDA
GO:0016871 "cycloartenol synthase activity" evidence=IDA
UNIPROTKB|Q8W3Z3 CASBPX2 "Cycloartenol synthase 2" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
TAIR|locus:2060121 CAS1 "cycloartenol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O82139 OSCPNX1 "Cycloartenol Synthase" [Panax ginseng (taxid:4054)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUB0 E2IUB0 "Cycloartenol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z4 CASBPX1 "Cycloartenol synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|Q6BE25 CPX "Cycloartenol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
UNIPROTKB|Q6BE24 CPQ "Cucurbitadienol synthase" [Cucurbita pepo (taxid:3663)] Back     alignment and assigned GO terms
TAIR|locus:2096905 LAS1 "lanosterol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z2 OSCBPW "Lupeol synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W3Z4CAS1_BETPL5, ., 4, ., 9, 9, ., 80.79920.95040.6258N/Ano
Q6Z2X6CAS_ORYSJ5, ., 4, ., 9, 9, ., 80.76730.97420.6482yesno
Q8W3Z3CAS2_BETPL5, ., 4, ., 9, 9, ., 80.84290.97420.6499N/Ano
E2IUB0CASS_KALDA5, ., 4, ., 9, 9, ., 80.79920.97420.6439N/Ano
Q9SLP9CAS1_LUFCY5, ., 4, ., 9, 9, ., 80.78920.97420.6431N/Ano
O82139CAS1_PANGI5, ., 4, ., 9, 9, ., 80.81310.97420.6490N/Ano
Q9SXV6CAS1_GLYGL5, ., 4, ., 9, 9, ., 80.82140.97620.6512N/Ano
Q2XPU6CAS1_RICCO5, ., 4, ., 9, 9, ., 80.83300.97420.6482N/Ano
Q6BE24CUCS_CUCPE5, ., 4, ., 9, 9, ., 3, 30.72450.97020.6413N/Ano
Q6BE25CAS1_CUCPE5, ., 4, ., 9, 9, ., 80.79680.97220.6409N/Ano
P38605CAS1_ARATH5, ., 4, ., 9, 9, ., 80.82430.97020.6455yesno
Q55D85CAS1_DICDI5, ., 4, ., 9, 9, ., 80.50690.97020.6970yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.990.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
cd02892634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 0.0
PLN02993763 PLN02993, PLN02993, lupeol synthase 0.0
PLN03012759 PLN03012, PLN03012, Camelliol C synthase 0.0
TIGR01787621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 0.0
cd02889348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 1e-171
TIGR03463634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 1e-156
COG1657517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 1e-69
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 5e-49
TIGR01507635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 2e-39
TIGR04277624 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol 8e-17
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 4e-13
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 4e-12
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 2e-11
cd02889 348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 4e-07
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 3e-06
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 3e-06
cd02889 348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 4e-05
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 4e-05
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 1e-04
cd02891282 cd02891, A2M_like, Proteins similar to alpha2-macr 0.002
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information 
 Score =  728 bits (1882), Expect = 0.0
 Identities = 258/497 (51%), Positives = 326/497 (65%), Gaps = 16/497 (3%)

Query: 1   MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
            WC  R VY+PMSYLYGKR V PITP VL+LR EL+  PY +I+W + RN     DLY  
Sbjct: 153 FWCWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN-----DLYDY 207

Query: 61  HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
            P  Q +  A     +       P K LR KALR A + I Y DENT YL I P  K  N
Sbjct: 208 RPPWQRLFDALDR--LLHWYEPLPPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANN 265

Query: 121 MLCCWVED-PNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIISTNLVE 179
           ML  WV   P+S AFK H+ RI+D+LW+  +GMK+   NGSQ+WDTA AVQA++   L  
Sbjct: 266 MLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAP 325

Query: 180 EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS 239
           E+   LKKA  ++ +SQ+  D PG+    YRH+ KG W FSTA+ G+P SD T+E LKA 
Sbjct: 326 EFDPALKKALDWLLESQI-LDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 384

Query: 240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGD 299
           L L +L     GE +  +RLYD+V+ +  +QN++GGFA +E   +Y WLE LNP E FGD
Sbjct: 385 LRLQELPPF--GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGD 442

Query: 300 IVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGV 359
           I+ID P VECT + ++AL  F KLYPGH + ++D  I+RAVK++ + QE DGSWYG WGV
Sbjct: 443 IMIDPPYVECTGSVLEALGLFGKLYPGH-RREIDPAIRRAVKYLLREQEPDGSWYGRWGV 501

Query: 360 CFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEG 419
           C+ YGTWF ++ L AAG +Y NS  IRKAC+FLLSKQ P GGWGESYLS + K Y    G
Sbjct: 502 CYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSY--AGG 559

Query: 420 DRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMI 479
            RS VV TAWA+LAL+ AG+   D   + R  +YL+N+Q+ +GD+PQEEI GV   N  I
Sbjct: 560 GRSTVVQTAWALLALMAAGEP--DSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYI 617

Query: 480 SYSAYRNIFPIWALGEY 496
            Y  YRN FP+WALG Y
Sbjct: 618 RYHNYRNYFPLWALGRY 634

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. Length = 634
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information
>gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|239221 cd02891, A2M_like, Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 505
PLN03012759 Camelliol C synthase 100.0
PLN02993763 lupeol synthase 100.0
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 100.0
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 100.0
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
PLN03012759 Camelliol C synthase 100.0
PLN02993763 lupeol synthase 100.0
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.97
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.96
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.95
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.95
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.95
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.93
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.89
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.86
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.82
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.81
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.8
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.79
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.74
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.74
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.74
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.74
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.73
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.7
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.7
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.69
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.67
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.66
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.66
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.65
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.6
PLN02710439 farnesyltranstransferase subunit beta 99.58
PLN02710 439 farnesyltranstransferase subunit beta 99.53
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 99.47
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.42
KOG0366329 consensus Protein geranylgeranyltransferase type I 99.39
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 99.3
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.28
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 99.27
KOG0366329 consensus Protein geranylgeranyltransferase type I 99.27
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.27
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 99.22
KOG0367347 consensus Protein geranylgeranyltransferase Type I 99.03
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 98.91
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 98.89
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 98.73
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 98.73
KOG0367347 consensus Protein geranylgeranyltransferase Type I 98.73
COG1689274 Uncharacterized protein conserved in archaea [Func 98.49
COG1689274 Uncharacterized protein conserved in archaea [Func 98.39
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 98.38
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 98.2
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 98.15
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.13
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 97.86
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 97.6
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 97.56
PLN02592 800 ent-copalyl diphosphate synthase 97.48
PLN02279 784 ent-kaur-16-ene synthase 97.07
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.98
PLN02592 800 ent-copalyl diphosphate synthase 96.96
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 96.94
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 96.65
KOG13661436 consensus Alpha-macroglobulin [Posttranslational m 96.48
PLN02279 784 ent-kaur-16-ene synthase 96.39
TIGR01535648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 96.15
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 95.97
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 95.36
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 95.22
COG3387612 SGA1 Glucoamylase and related glycosyl hydrolases 94.21
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 93.28
PF10022361 DUF2264: Uncharacterized protein conserved in bact 93.23
COG1331 667 Highly conserved protein containing a thioredoxin 89.47
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 88.39
>PLN03012 Camelliol C synthase Back     alignment and domain information 
Probab=100.00  E-value=3.1e-129  Score=1056.15  Aligned_cols=501  Identities=59%  Similarity=1.106  Sum_probs=479.4

Q ss_pred             CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631            1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL   80 (505)
Q Consensus         1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   80 (505)
                      ||||||+|||||+|||++||++|++|++.+||+|||++||++|||.++|++||++|+|+||+++++++|..++.++|+++
T Consensus       257 ~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l  336 (759)
T PLN03012        257 MWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFL  336 (759)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCchHHHhhhHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCh-HHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheecccCCCCHHHHHHHhhhhhceeeeCCCceeecCCC
Q 010631           81 MHWPGK-KLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG  159 (505)
Q Consensus        81 ~~~~~~-~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~  159 (505)
                      ..+|+. +||++|+++++++|+.||++|.|+|++||+++|+||++++++|+||.|++|+++|.+|+|+.++||++|+| +
T Consensus       337 ~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q~~-g  415 (759)
T PLN03012        337 ACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQSF-G  415 (759)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCC-C
Confidence            888755 69999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CChhHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHh
Q 010631          160 SQLWDTAFAVQAIISTNLVEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKAS  239 (505)
Q Consensus       160 s~vwDTa~a~~AL~~ag~~~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL  239 (505)
                      ||||||||+++||+++|++++++++++||++||+++|++++++|||+.++|+.++|||+|++.|++|||+||||++|+|+
T Consensus       416 SqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~  495 (759)
T PLN03012        416 SQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCC  495 (759)
T ss_pred             CcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHH
Confidence            99999999999999999988888999999999999999988999999999999999999999999999999999999998


Q ss_pred             HHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHH
Q 010631          240 LLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTS  319 (505)
Q Consensus       240 ~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~  319 (505)
                      +.++..++++.|..+..+++.+||+||++|||+||||++|+.++++.|+|.+||+|+|+++|+|++++|||++||++|..
T Consensus       496 lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~  575 (759)
T PLN03012        496 LLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALIL  575 (759)
T ss_pred             HHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHH
Confidence            77765554455667788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCC
Q 010631          320 FKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNSSSIRKACEFLLSKQRPS  399 (505)
Q Consensus       320 ~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~~~i~ra~~~L~~~Q~~D  399 (505)
                      +++.+++++.+++++.|+||++||++.|++||||+|+||+||+|||++||.||.++|.++.++++|+|||+||+++|++|
T Consensus       576 f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~D  655 (759)
T PLN03012        576 FKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDN  655 (759)
T ss_pred             HhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCC
Confidence            99888888888889999999999999999999999999999999999999999999998767799999999999999999


Q ss_pred             CCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceecccccc
Q 010631          400 GGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMI  479 (505)
Q Consensus       400 GgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~  479 (505)
                      |||||++.||.++.|++.+++.|+++||||||+||+++|+.+.++++|+||++||+++|++||+|++++++|+||++|||
T Consensus       656 GGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i  735 (759)
T PLN03012        656 GGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLL  735 (759)
T ss_pred             CCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEE
Confidence            99999999999999998666789999999999999999988767778999999999999999999999999999999999


Q ss_pred             ccCCchhhHHHHHHHHHHHHhhh
Q 010631          480 SYSAYRNIFPIWALGEYRCRVLE  502 (505)
Q Consensus       480 ~y~~y~~~fpl~AL~~y~~~~~~  502 (505)
                      +||+||++|||||||+|++..+.
T Consensus       736 ~Y~~Yr~~FPl~ALg~Y~~~~~~  758 (759)
T PLN03012        736 HYAAYRNIFPLWALAEYRARVPL  758 (759)
T ss_pred             ecCccchHHHHHHHHHHHHhccC
Confidence            99999999999999999998764

>PLN02993 lupeol synthase Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
1w6j_A732 Structure Of Human Osc In Complex With Ro 48-8071 L 1e-123
1w6k_A732 Structure Of Human Osc In Complex With Lanosterol L 1e-123
1gsz_A631 Crystal Structure Of A Squalene Cyclase In Complex 2e-29
2sqc_A631 Squalene-Hopene Cyclase From Alicyclobacillus Acido 8e-29
3sqc_A631 Squalene-Hopene Cyclase Length = 631 2e-28
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/502 (44%), Positives = 315/502 (62%), Gaps = 17/502 (3%)
Query: 1   MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
           +WCHCR VYLPMSY Y  R      P V +LR+EL+   +  IDW   RN  A ++LY P
Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288
Query: 61  HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
           H  +  V++A L+     L  H     LR++A++   +HI  +D  T+ + IGP++K +N
Sbjct: 289 HSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343
Query: 121 MLCCW-VEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIIST--NL 177
           ML  W V+ P S AF+ H+ RI DYLW+  DGMK+QG NGSQ+WDTAFA+QA++    + 
Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403
Query: 178 VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGXX 237
             E+ + L+KAH++++ SQV  D P +   +YR + KG + FST D GW +SDCT+E   
Sbjct: 404 RPEFSSCLQKAHEFLRLSQV-PDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462
Query: 238 XXXXXXXXXXXIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETF 297
                      +  E I  +RL D+V V+ +++N DGGFATYE  R    LE+LNP+E F
Sbjct: 463 AVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVF 521
Query: 298 GDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW 357
           GDI+IDY  VECTSA +QAL  F K +P H   ++   + + ++F  + Q  DGSW GSW
Sbjct: 522 GDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSW 581
Query: 358 GVCFTYGTWFGVKGLVAAGMNYSNSSS---IRKACEFLLSKQRPSGGWGESYLSCQKKVY 414
           GVCFTYGTWFG++     G  Y + ++   + +AC+FLLS+Q   GGWGE + SC+++ Y
Sbjct: 582 GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 641
Query: 415 SNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFN 474
             L+  +S + NT WAM+ L+     + +     R  R L+  Q+ NGD+PQE I GVFN
Sbjct: 642 --LQSAQSQIHNTCWAMMGLMAVRHPDIEAQ--ERGVRCLLEKQLPNGDWPQENIAGVFN 697
Query: 475 RNCMISYSAYRNIFPIWALGEY 496
           ++C ISY++YRNIFPIWALG +
Sbjct: 698 KSCAISYTSYRNIFPIWALGRF 719
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631 Back     alignment and structure
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631 Back     alignment and structure
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query505
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 0.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 1e-141
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 7e-09
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 2e-11
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 1e-09
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 3e-09
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 1e-08
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 7e-06
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 2e-05
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 2e-05
3dra_B 390 Geranylgeranyltransferase type I beta subunit; ger 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
3prx_B 1642 Cobra venom factor; immune system, complement, imm 9e-04
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  527 bits (1358), Expect = 0.0
 Identities = 228/508 (44%), Positives = 320/508 (62%), Gaps = 17/508 (3%)

Query: 1   MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYP 60
           +WCHCR VYLPMSY Y  R      P V +LR+EL+   +  IDW   RN  A ++LY P
Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288

Query: 61  HPLIQDVLWATLDKVVEPLLMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLN 120
           H  +  V++A L+        H     LR++A++   +HI  +D  T+ + IGP++K +N
Sbjct: 289 HSWLLRVVYALLNL-----YEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343

Query: 121 MLCCW-VEDPNSEAFKLHIPRINDYLWIAEDGMKVQGYNGSQLWDTAFAVQAIIST--NL 177
           ML  W V+ P S AF+ H+ RI DYLW+  DGMK+QG NGSQ+WDTAFA+QA++    + 
Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403

Query: 178 VEEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK 237
             E+ + L+KAH++++ SQV  D P +   +YR + KG + FST D GW +SDCT+E LK
Sbjct: 404 RPEFSSCLQKAHEFLRLSQVP-DNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462

Query: 238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETF 297
           A LLL +    +  E I  +RL D+V V+ +++N DGGFATYE  R    LE+LNP+E F
Sbjct: 463 AVLLLQEKCPHV-TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVF 521

Query: 298 GDIVIDYPCVECTSASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSW 357
           GDI+IDY  VECTSA +QAL  F K +P H   ++   + + ++F  + Q  DGSW GSW
Sbjct: 522 GDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSW 581

Query: 358 GVCFTYGTWFGVKGLVAAGMNYSNSS---SIRKACEFLLSKQRPSGGWGESYLSCQKKVY 414
           GVCFTYGTWFG++     G  Y + +    + +AC+FLLS+Q   GGWGE + SC+++ Y
Sbjct: 582 GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 641

Query: 415 SNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFN 474
              +  +S + NT WAM+ L+     + +     R  R L+  Q+ NGD+PQE I GVFN
Sbjct: 642 V--QSAQSQIHNTCWAMMGLMAVRHPDIE--AQERGVRCLLEKQLPNGDWPQENIAGVFN 697

Query: 475 RNCMISYSAYRNIFPIWALGEYRCRVLE 502
           ++C ISY++YRNIFPIWALG +     E
Sbjct: 698 KSCAISYTSYRNIFPIWALGRFSQLYPE 725
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Length = 1325 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Length = 1642 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.98
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.96
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.93
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.93
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.93
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.92
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.92
2wy7_A310 Complement C3D fragment; immune system, immune res 99.92
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.92
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.9
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.9
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 99.9
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.89
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.85
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.78
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.78
2wy7_A310 Complement C3D fragment; immune system, immune res 99.76
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.75
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.75
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 99.7
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.64
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.63
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 99.6
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.48
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 99.41
3prx_B 1642 Cobra venom factor; immune system, complement, imm 99.38
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.37
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 99.36
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 99.35
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.34
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.33
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 99.33
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.89
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 98.87
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 98.81
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.8
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.66
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.55
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 98.47
3prx_B 1642 Cobra venom factor; immune system, complement, imm 98.07
3k11_A445 Putative glycosyl hydrolase; structural genomics, 97.83
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 97.79
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.54
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 97.47
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.33
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 97.28
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.27
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 97.18
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.13
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 97.11
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.95
3pmm_A382 Putative cytoplasmic protein; structural genomics, 96.95
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 96.15
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 95.52
1nc5_A373 Hypothetical protein YTER; structural genomics, he 95.51
3k11_A445 Putative glycosyl hydrolase; structural genomics, 95.48
1lf6_A684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 95.43
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 95.39
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 94.36
2fba_A492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 94.04
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 92.51
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 92.38
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 92.37
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 91.54
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 91.12
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 89.72
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 89.51
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 88.34
1gai_A472 Glucoamylase-471; hydrolase, glycosidase, polysacc 86.1
3h7l_A 586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 85.01
1lf6_A 684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 84.0
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 83.87
2fba_A 492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 80.94
1fp3_A 402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 80.73
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-97  Score=829.06  Aligned_cols=493  Identities=46%  Similarity=0.890  Sum_probs=452.8

Q ss_pred             CceeecchHHHHHHHhhCCCcCcCCcchhhhhhhcccCCCCCCCchhhhcccccccCCCCCchHHHHHHHHHHHHhhhhc
Q 010631            1 MWCHCRMVYLPMSYLYGKRFVGPITPTVLALRKELFTVPYHEIDWNEARNLCAKEDLYYPHPLIQDVLWATLDKVVEPLL   80 (505)
Q Consensus         1 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~l~~el~~~~~~~~~~~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   80 (505)
                      ||||+|+|||||+|||++||++|.+|++.+||+|||++||++|+|.++|+.|+++|+|+|+++++..++..+ +++|+++
T Consensus       229 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~  307 (732)
T 1w6k_A          229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHHH  307 (732)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHTC
T ss_pred             HHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhcC
Confidence            799999999999999999999998999999999999999999999999999999999999999988888777 6677654


Q ss_pred             cCCCChHHHHHHHHHHHHHHhhccCCcceeeechhhhhhhhheeccc-CCCCHHHHHHHhhhhhceeeeCCCceeecCCC
Q 010631           81 MHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVE-DPNSEAFKLHIPRINDYLWIAEDGMKVQGYNG  159 (505)
Q Consensus        81 ~~~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~g~~~q~~~~  159 (505)
                          ++++|++|++++++||+++|++++|+||+||+++++|++++.. +|++|.+++|+++|.+|+|+.+||+++|+||+
T Consensus       308 ----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~~g  383 (732)
T 1w6k_A          308 ----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNG  383 (732)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSSSC
T ss_pred             ----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCCCC
Confidence                3789999999999999999999999999999999999998864 49999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHH
Q 010631          160 SQLWDTAFAVQAIISTNLVE--EYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLK  237 (505)
Q Consensus       160 s~vwDTa~a~~AL~~ag~~~--~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~  237 (505)
                      |+||||+++++||.++|+++  ++.+.++||++||+++|++++ +|||..++|+.++|||+|++.+++|||+||||++++
T Consensus       384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~  462 (732)
T 1w6k_A          384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK  462 (732)
T ss_dssp             CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence            99999999999999999865  467899999999999999864 579999999999999999999999999999999999


Q ss_pred             HhHHhhhccccccCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHH
Q 010631          238 ASLLLSKLSSAIVGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQAL  317 (505)
Q Consensus       238 aL~~~~~~~~~~~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL  317 (505)
                      ||..+.+..+.. +..++.+.+++|++||+++|++||||++|+.+++..|++.+||+++|+++++|++++++|++||.+|
T Consensus       463 aL~~~~~~~~~~-g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL  541 (732)
T 1w6k_A          463 AVLLLQEKCPHV-TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL  541 (732)
T ss_dssp             HHHHHHHHCTTC-CSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHH
T ss_pred             HHHHHhcccccc-cchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHH
Confidence            998876543211 3456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCCCchhhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHh
Q 010631          318 TSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNYSNS---SSIRKACEFLLS  394 (505)
Q Consensus       318 ~~~~~~~~~~~~~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~~~~---~~i~ra~~~L~~  394 (505)
                      ..++...++++.+++++.|+||++||++.|++||+|+++||++++|+|++++.||.++|..+.++   +.++||++||++
T Consensus       542 ~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls  621 (732)
T 1w6k_A          542 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLS  621 (732)
T ss_dssp             HHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHT
T ss_pred             HHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Confidence            99988777777677788999999999999999999999999999999999999999999863333   899999999999


Q ss_pred             ccCCCCCCCcCcccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceec
Q 010631          395 KQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFN  474 (505)
Q Consensus       395 ~Q~~DGgWge~~~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~  474 (505)
                      +|++||||++++.+|.+..|.+  +..|++++|||||+||+.++..  +.++++++++||+++|+++|+|++++++|+||
T Consensus       622 ~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~  697 (732)
T 1w6k_A          622 RQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFN  697 (732)
T ss_dssp             TCCTTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEET
T ss_pred             hcccCCCCCCCCccccccccCC--CCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCccccccc
Confidence            9999999999988888777875  5578999999999999999876  45679999999999999999999999999999


Q ss_pred             cccccccCCchhhHHHHHHHHHHHHhhhhc
Q 010631          475 RNCMISYSAYRNIFPIWALGEYRCRVLEAH  504 (505)
Q Consensus       475 ~~~~~~y~~y~~~fpl~AL~~y~~~~~~~~  504 (505)
                      ++|||+||+|+++|||+||++|++++..++
T Consensus       698 ~~~~i~Y~~y~~~fpl~AL~~y~~~~~~~~  727 (732)
T 1w6k_A          698 KSCAISYTSYRNIFPIWALGRFSQLYPERA  727 (732)
T ss_dssp             TTEEECCTTHHHHHHHHHHHHHHHHCTTSG
T ss_pred             chhhhcccchhHHHHHHHHHHHHHhcchhh
Confidence            999999999999999999999999876543
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 505
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 1e-160
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 1e-112
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 2e-69
d2sqca2271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 6e-25
d2sqca2271 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic 2e-04
d1gxma_324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 1e-12
d1gxma_ 324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 4e-06
d1r76a_408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 2e-12
d1r76a_ 408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 1e-04
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 5e-12
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 1e-10
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  461 bits (1186), Expect = e-160
 Identities = 177/429 (41%), Positives = 252/429 (58%), Gaps = 20/429 (4%)

Query: 80  LMHWPGKKLREKALRNAIKHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPN-SEAFKLHI 138
           L  W     R +       ++  E        +      L+    + + P    AF+  +
Sbjct: 17  LGRWRLNCERGRQT---WTYLQDERAGREQTGLEAYALGLDTKNYFKDLPKAHTAFEGAL 73

Query: 139 PRINDYLWI-AEDGMKV----QGYNGSQLWDTAFAVQAIIST--NLVEEYGATLKKAHKY 191
             +  Y+ + AEDG       QG NGSQ+WDTAFA+QA++    +   E+ + L+KAH++
Sbjct: 74  NGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEF 133

Query: 192 IKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAIVG 251
           ++ SQV  D P +   +YR + KG + FST D GW +SDCT+E LKA LLL +     V 
Sbjct: 134 LRLSQVP-DNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VT 191

Query: 252 EPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTS 311
           E I  +RL D+V V+ +++N DGGFATYE  R    LE+LNP+E FGDI+IDY  VECTS
Sbjct: 192 EHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTS 251

Query: 312 ASIQALTSFKKLYPGHWQEDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKG 371
           A +QAL  F K +P H   ++   + + ++F  + Q  DGSW GSWGVCFTYGTWFG++ 
Sbjct: 252 AVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEA 311

Query: 372 LVAAGMNYSNSSS---IRKACEFLLSKQRPSGGWGESYLSCQKKVYSNLEGDRSHVVNTA 428
               G  Y + ++   + +AC+FLLS+Q   GGWGE + SC+++ Y   +  +S + NT 
Sbjct: 312 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV--QSAQSQIHNTC 369

Query: 429 WAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRNIF 488
           WAM+ L+       D     R  R L+  Q+ NGD+PQE I GVFN++C ISY++YRNIF
Sbjct: 370 WAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIF 427

Query: 489 PIWALGEYR 497
           PIWALG + 
Sbjct: 428 PIWALGRFS 436
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query505
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.98
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.97
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.88
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.8
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.79
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.77
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 99.74
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.7
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 99.66
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 99.66
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.64
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.62
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.45
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 99.44
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.41
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.28
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.95
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.62
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.5
d1lf6a1397 Bacterial glucoamylase, C-terminal domain {Thermoa 96.81
d1ulva1413 Glucodextranase, domain A {Arthrobacter globiformi 96.74
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 95.37
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 94.52
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 94.48
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 93.94
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 91.96
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 91.36
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 91.0
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 88.43
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 85.13
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 82.79
d1fp3a_ 402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 81.06
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-88  Score=707.90  Aligned_cols=401  Identities=43%  Similarity=0.808  Sum_probs=364.3

Q ss_pred             HHHhhccCCcceeeechhhhhhhhheecccCCC-CHHHHHHHhhhhhceee-eCCCcee----ecCCCCChhHHHHHHHH
Q 010631           98 KHIHYEDENTRYLCIGPVNKVLNMLCCWVEDPN-SEAFKLHIPRINDYLWI-AEDGMKV----QGYNGSQLWDTAFAVQA  171 (505)
Q Consensus        98 ~~~~~~~~~~~~~~~~pv~~~l~~l~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~g~~~----q~~~~s~vwDTa~a~~A  171 (505)
                      .+|++|+.++.+.++.|+..+|+|++++.++|. +..+++++.+|.++++. .+||+++    |++|+||||||+|+++|
T Consensus        32 ~~~~~e~~g~~~~~~~~~~~~L~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~edg~w~~~~~~~~~~S~vWDTal~~~A  111 (448)
T d1w6ka1          32 TYLQDERAGREQTGLEAYALGLDTKNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQA  111 (448)
T ss_dssp             EECCC--CCCCCCHHHHHHHTCCCTTTSCCCCCCCSHHHHHHHHHHHHHTTBCTTSCBCCCCCCSSSCCHHHHHHHHHHH
T ss_pred             hhhhhhcCCCcccchHHHHHHHHHhCcCccCchhhhHHHHHHhhhhHhhccccCCCchhHhhcCCCCCCChHHHHHHHHH
Confidence            455666777778889999999999999888865 46899999999999874 6888765    77889999999999999


Q ss_pred             HHhcCCC--cchHHHHHHHHHHHHhcccCCCCCCCccccccCCCCCCCCCcccCCCCCCchhhHHHHHHhHHhhhccccc
Q 010631          172 IISTNLV--EEYGATLKKAHKYIKDSQVLEDCPGNLDFWYRHISKGAWPFSTADHGWPISDCTSEGLKASLLLSKLSSAI  249 (505)
Q Consensus       172 L~~ag~~--~~~~~~l~~A~~~L~~~Q~~~~~~Gd~~~~~~~~~~GgW~f~~~~~~~pd~d~Ta~al~aL~~~~~~~~~~  249 (505)
                      |.++|..  ++++++|+||++||+.+|++++ +|||++++++.++|||+|++.|++|||+||||++|+||+.+....+. 
T Consensus       112 L~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~-  189 (448)
T d1w6ka1         112 LLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-  189 (448)
T ss_dssp             HHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHhCCCCCccchHHHHHHHHHHHhhccCcC-CCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCcc-
Confidence            9999863  4578999999999999999874 58999999999999999999999999999999999999877654432 


Q ss_pred             cCCccchHHHHHHHHHHHhcccCCcceeeeecccccchhcccCcccccCCcccccCCCcchHHHHHHHHHhhhhCCCCch
Q 010631          250 VGEPIETKRLYDSVNVIFSLQNADGGFATYELMRSYPWLEVLNPAETFGDIVIDYPCVECTSASIQALTSFKKLYPGHWQ  329 (505)
Q Consensus       250 ~g~~~~~~~i~~Av~~Ll~~Qn~dGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~vl~aL~~~~~~~~~~~~  329 (505)
                      .++.++++++.+|++||++|||+||||++|+.+++..|++.+|+++.|+++++|++++++|++||++|..++..+|+++.
T Consensus       190 ~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~  269 (448)
T d1w6ka1         190 VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRA  269 (448)
T ss_dssp             CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSH
T ss_pred             ccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCcccc
Confidence            24567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhccccCCCcccCCCCccchHHHHHHHHHHcCCCC---CCcHHHHHHHHHHHhccCCCCCCCcCc
Q 010631          330 EDVDHCIKRAVKFIEKIQELDGSWYGSWGVCFTYGTWFGVKGLVAAGMNY---SNSSSIRKACEFLLSKQRPSGGWGESY  406 (505)
Q Consensus       330 ~~i~~~i~rav~~L~~~Q~~DG~W~g~wg~~~~y~T~~al~aL~~~G~~~---~~~~~i~ra~~~L~~~Q~~DGgWge~~  406 (505)
                      .+++++|+||++||++.|++||+|+++||+||+|+|++++.||.++|..+   ...+.|+||++||+++|++||||||++
T Consensus       270 ~~~~~~i~ral~yL~~~Q~~DGsW~g~wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~  349 (448)
T d1w6ka1         270 AEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDF  349 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCT
T ss_pred             ccchHHHHHHHHHHHccCCCCCcccccCCCcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCC
Confidence            99999999999999999999999999999999999999999999999763   235899999999999999999999999


Q ss_pred             ccccccccccCCCCCCchhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcCCCCCCCCcccceeccccccccCCchh
Q 010631          407 LSCQKKVYSNLEGDRSHVVNTAWAMLALIDAGQAETDPTPLHRAARYLINSQMENGDYPQEEIMGVFNRNCMISYSAYRN  486 (505)
Q Consensus       407 ~s~~~~~y~~~~~~~s~~~~Ta~ALlaL~~ag~~~~d~~~i~rgv~~L~~~Q~~~G~w~~~~~~g~f~~~~~~~y~~y~~  486 (505)
                      .||.++.|.+  ++.|++++|||||+||++++..  +.++|+|||+||+++|++||+|+++.++|+||++|||+||+|++
T Consensus       350 ~s~~~~~~~~--~~~s~~~~TAwAl~aL~~ag~~--~~~~v~rgv~~L~~~Q~~~G~W~~~~~~g~f~~~~~l~Y~~Y~~  425 (448)
T d1w6ka1         350 ESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRN  425 (448)
T ss_dssp             HHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHH
T ss_pred             ccccCcccCC--CCCCcHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHccCCCCCCCCCceeeeecccceeecCCcch
Confidence            9998888874  6789999999999999999976  35679999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhc
Q 010631          487 IFPIWALGEYRCRVLEAH  504 (505)
Q Consensus       487 ~fpl~AL~~y~~~~~~~~  504 (505)
                      +|||||||||++++..++
T Consensus       426 ~fpl~AL~ry~~~~~~~~  443 (448)
T d1w6ka1         426 IFPIWALGRFSQLYPERA  443 (448)
T ss_dssp             HHHHHHHHHHHHHCTTSG
T ss_pred             HHHHHHHHHHHHhCCccc
Confidence            999999999999987764
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure